CMCompare: Discriminatory Power of RNA Family Models

originally by Christian Hoener zu Siederdissen, Ivo L Hofacker (2010)

This page currently hosts the legacy version of CMCompare as a companion page for a book chapter (in progress, Eggenhofer, Hoener zu Siederdissen, 2019). Stay tuned for an update soon(ish).

Legacy binary, Linux 64 bit

Download this file: CMCompare Legacy.

wget http://www.bioinf.uni-leipzig.de/Software/cmcompare/cmcompare-legacy

NixOS overlay for the legacy version

For users of NixOS, there is a bioinformatics overlay. Once the overlay is in place, CMCompare is readily available.

Overlay download and installation

cd ./config/nixpkgs/overlays
git clone https://github.com/choener/overlay-bioinformatics

Using CMCompare

Temporarily:

nix-shell -p cmcompare-legacy-bin

Installation:

nix-env -iA nixos.cmcompare-legacy-bin

Source version on hackage

For the brave Haskell users, CMCompare is available via cabal install. We currently suggest the binary package for the legacy version.

cabal install CMCompare

Additional material for the book chapter Evolutionary Structure Conservation and Covariance Scores

CMCompare sample output