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Map of Hits

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Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.1.chr3L	653	708	ATENSPM11	2756	2811	c	0.8000	0.80	241
aga.U11.2.chrU	607	643	CER11-LTR_CE	246	278	c	0.7652	0.77	82
aga.U11.2.chrU	644	751	BURDOCK_I	5299	5405	c	0.7664	0.77	283
aga.U11.3.chrM	10	171	TAG3N1	507	667	d	0.7362	0.74	333
aga.U11.3.chrM	172	229	ATHAT10	3025	3082	d	0.7376	0.74	63
aga.U11.3.chrM	910	991	GYPSY47-I_AG	524	608	c	0.7711	0.77	271
aga.U11.3.chrM	992	1055	ATREP7	757	823	c	0.7045	0.71	127
aga.U11.3.chrM	1183	1413	SKIPPER	890	1118	c	0.7600	0.76	384
aga.U11.3.chrM	1414	1453	ENSPM_OS	4390	4426	c	0.7197	0.72	56
aga.U11.3.chrM	1454	1560	ATHATN5	249	369	c	0.7368	0.76	249
bta.U11.1.SCAFFOLD255372	6	118	BOVTA	96	208	d	0.8509	0.86	710
bta.U11.1.SCAFFOLD255372	1775	1862	CHRL	1	96	d	0.7079	0.71	269
bta.U11.1.SCAFFOLD255372	1971	2168	BOVTA	7	208	d	0.8806	0.89	1344
bta.U11.2.SCAFFOLD291927	74	286	BOV2	349	560	d	0.8920	0.89	1634
bta.U11.2.SCAFFOLD291927	385	992	L1_BT	556	1160	c	0.8993	0.90	4335
bta.U11.2.SCAFFOLD291927	1443	1643	BOV2	361	560	c	0.8657	0.87	1434
bta.U11.3.SCAFFOLD275400	360	412	ATCOPIA38A_I	261	312	d	0.7925	0.79	243
bta.U11.3.SCAFFOLD275400	531	568	OOREP1	267	300	d	0.8222	0.82	184
bta.U11.3.SCAFFOLD275400	573	854	BOV2	270	551	c	0.8057	0.81	1690
bta.U11.3.SCAFFOLD275400	1566	1788	MIR	16	257	d	0.6522	0.67	460
bta.U11.3.SCAFFOLD275400	1833	1979	BOVTA	64	208	c	0.8435	0.85	950
bta.U11.4.SCAFFOLD306532	831	1233	L1MC5	1731	2138	c	0.6446	0.64	629
bta.U11.4.SCAFFOLD306532	1332	1537	BTALUL1	2	205	d	0.7913	0.79	1142
bta.U11.5.SCAFFOLD275400	318	370	ATCOPIA38A_I	261	312	d	0.7925	0.79	243
bta.U11.5.SCAFFOLD275400	489	526	OOREP1	267	300	d	0.8222	0.82	184
bta.U11.5.SCAFFOLD275400	531	812	BOV2	270	551	c	0.8057	0.81	1690
bta.U11.5.SCAFFOLD275400	1524	1746	MIR	16	257	d	0.6522	0.67	460
bta.U11.5.SCAFFOLD275400	1791	1937	BOVTA	64	208	c	0.8435	0.85	950
cfa.U11.1.chr2	1	131	SINEC1_CF	1	131	c	0.9313	0.93	1105
cfa.U11.1.chr2	157	314	SINEC1D_CF	1	166	d	0.8165	0.82	825
cfa.U11.1.chr2	1743	1944	SINEC2A1_CF	1	196	d	0.8743	0.87	1099
cfa.U11.1.chr2	2074	2200	SINEC1C2_CF	1	118	d	0.8417	0.84	755
cfa.U11.2.chr30	398	574	L1ME4A	259	464	d	0.7088	0.71	336
cfa.U11.2.chr30	656	755	SINEC1D_CF	1	97	c	0.7576	0.76	454
cfa.U11.2.chr30	1112	1281	L1MA9	880	1048	d	0.7160	0.72	522
cfa.U11.2.chr30	1424	1602	SINEC1D_CF	1	195	c	0.7637	0.76	638
cfa.U11.2.chr30	1633	1789	SINEC1C1_CF	1	157	c	0.9299	0.93	1305
cfa.U11.2.chr30	1890	1956	SINEC1D_CF	2	79	c	0.7826	0.78	278
cfa.U11.2.chr30	2060	2122	ATREP10D	129	191	c	0.8281	0.83	250
cfa.U11.3.chrX	28	960	L1_Fc_orf2	2172	3122	d	0.7899	0.79	5022
cfa.U11.3.chrX	1134	1320	L1_Felid	409	602	d	0.8316	0.83	1095
cfa.U11.3.chrX	1366	1537	SINEC1A_CF	1	168	d	0.9408	0.94	1435
cfa.U11.3.chrX	1548	1787	L1_Felid	690	930	d	0.7273	0.73	863
cfa.U11.3.chrX	1893	1954	TOM_I	5499	5563	d	0.7778	0.78	242
cfa.U11.4.chr37	4	116	MLT1I	130	236	d	0.6972	0.70	285
cfa.U11.4.chr37	206	330	MLT1I	281	409	d	0.7063	0.71	435
cfa.U11.4.chr37	640	702	ROVER_DM	3616	3679	c	0.7656	0.77	250
cfa.U11.4.chr37	1323	1371	MEGY-LTR_MT	479	530	d	0.8200	0.82	271
cfa.U11.4.chr37	1509	1602	MIR3	38	149	d	0.7143	0.71	267
cfa.U11.4.chr37	1818	1879	MER5C	7	76	d	0.7969	0.80	291
cfa.U11.4.chr37	1926	2003	CHARLIE10	1372	1449	c	0.7595	0.76	382
cfa.U11.5.chr17	1276	1705	L1M3A_5	66	526	c	0.6267	0.63	499
cfa.U11.5.chr17	1776	1821	ATCOPIA55_I	4224	4267	d	0.8222	0.82	244
cfa.U11.7.chr22	316	1300	L1ME_ORF2	1722	2721	c	0.6639	0.67	1122
cfa.U11.7.chr22	1837	1996	SINEC1C1_CF	1	159	d	0.8875	0.89	1192
cfa.U11.7.chr22	2035	2200	SINEC1D_CF	2	164	d	0.7019	0.70	411
cfa.U11.8.chr8	414	506	MIR3	58	152	d	0.7128	0.71	324
cfa.U11.8.chr8	1330	1527	SINEC1D_CF	2	190	d	0.8333	0.83	1159
cfa.U11.8.chr8	1542	1703	MIR	18	182	c	0.6522	0.66	341
csa.U11.1.paired_scaffold_106	2058	2149	L1-99ext_Cis	421	516	d	0.7849	0.78	450
dan.U11.1.2448814	885	957	ISFUN1	74	146	d	0.8919	0.89	480
dps.U11.2.Contig6654_Contig5965	72	170	CEREBA_HV_I	1460	1552	d	0.7396	0.74	297
dps.U11.2.Contig6654_Contig5965	192	251	Copia1-I_CR	1326	1381	c	0.7544	0.75	237
dps.U11.2.Contig6654_Contig5965	1390	1450	TE2-5_CR	57	114	d	0.6949	0.69	229
dps.U11.2.Contig6654_Contig5965	2157	2199	OSHOOTER	241	284	d	0.7955	0.80	233
dps.U11.4.Contig1828_Contig8101	1029	1074	MDR2	5950	5996	c	0.7872	0.79	225
dps.U11.4.Contig1828_Contig8101	1526	1605	L1P_MA2	4469	4549	d	0.7500	0.75	255
dps.U11.5.Contig2645_Contig5905	520	1026	ROO_I	4379	4888	d	0.6502	0.65	509
dps.U11.5.Contig2645_Contig5905	1035	1167	ROO_I	5029	5162	d	0.7612	0.76	555
dps.U11.5.Contig2645_Contig5905	1174	2045	ROO_I	5216	6127	d	0.7070	0.71	2488
dps.U11.5.Contig2645_Contig5905	2062	2200	ROO_I	6639	6777	d	0.6978	0.70	450
dps.U11.6.Contig3838_Contig6523	303	466	GRANDE1_ZD	11553	11714	d	0.6937	0.69	317
dps.U11.6.Contig3838_Contig6523	1147	1374	L1ME_ORF2	632	879	c	0.6923	0.70	270
dps.U11.6.Contig3838_Contig6523	1375	1409	HELITRONY1A	1163	1197	c	0.7097	0.71	96
dps.U11.6.Contig3838_Contig6523	1724	1777	L1-3_CR	267	323	c	0.7455	0.75	241
dps.U11.6.Contig3838_Contig6523	1884	1934	AGM1	394	457	c	0.8269	0.83	240
dps.U11.7.Contig5305_Contig6323	2	159	WORF_DMi	4015	4174	d	0.8625	0.86	953
dps.U11.7.Contig5305_Contig6323	160	345	BILBO	3099	3297	d	0.7708	0.77	773
dps.U11.7.Contig5305_Contig6323	1996	2156	TransibN1_DP	1034	1194	c	0.9255	0.93	1125
dre.U11.1.chrUn	3	123	TOL2_OL	3907	4026	d	0.6967	0.70	310
dre.U11.1.chrUn	1260	1521	TDR18	37	311	c	0.9057	0.91	1855
dre.U11.1.chrUn	1563	1692	TDR18	50	198	d	0.8195	0.82	547
dre.U11.1.chrUn	1835	1991	HATN17_DR	334	491	c	0.8344	0.83	895
dre.U11.1.chrUn	1992	2129	TDR18	423	572	d	0.7676	0.77	385
dre.U11.2.chr19	108	304	DNAX-1_DR	12	214	c	0.8191	0.82	1094
dre.U11.2.chr19	733	836	DNA-2-3_DR	1316	1391	c	0.8718	0.87	278
dre.U11.2.chr19	1275	1330	ARNOLD4	2101	2158	d	0.7544	0.75	233
dre.U11.2.chr19	1548	1630	REX1_FURC	3246	3324	d	0.7470	0.75	232
dre.U11.2.chr19	1764	1906	ASAT_CY	67	211	c	0.6972	0.70	327
dre.U11.2.chr19	1954	2101	HE1_DR1	243	392	c	0.8543	0.85	962
dre.U11.3.chr1	85	145	CR1-1_DR	4916	4975	d	0.7869	0.79	289
dre.U11.3.chr1	489	710	HE1_DR1	137	386	c	0.8678	0.87	1312
dre.U11.3.chr1	1303	1646	DANA	1	394	c	0.8175	0.81	2412
dre.U11.4.chr25	783	1118	HE1_DR1	10	386	d	0.8446	0.84	1920
dre.U11.4.chr25	1119	1150	TDR9	74	106	d	0.7830	0.79	133
dre.U11.4.chr25	1157	1514	HE1_DR1	2	375	d	0.8524	0.86	2166
dre.U11.4.chr25	1515	1539	TDR9	65	90	d	0.8444	0.86	153
dre.U11.4.chr25	1727	1874	TDR18	397	572	c	0.8824	0.88	855
dre.U11.4.chr25	1885	2200	TDR18	7	323	c	0.9299	0.93	2402
dvi.U11.1.scaffold_9	1871	1914	GYPSY2-I_MT	1325	1369	c	0.7095	0.71	113
dvi.U11.1.scaffold_9	1915	2058	GYPSY2-I_MT	1231	1369	c	0.7394	0.74	396
dvi.U11.1.scaffold_9	2059	2146	ENSPM3_OS	10143	10230	c	0.6604	0.66	192
dya.U11.2.chrU	15	143	DNAREP1_DM	452	594	c	0.9308	0.93	935
dya.U11.2.chrU	145	245	DNAREP1_DM	161	284	c	0.8558	0.86	452
dya.U11.2.chrU	505	601	DNAREP1_DM	161	278	c	0.7864	0.79	272
dya.U11.2.chrU	603	669	DNAREP1_DM	20	86	c	0.7941	0.79	344
dya.U11.2.chrU	956	999	QUASIMODO_I	3891	3942	c	0.8333	0.83	228
dya.U11.2.chrU	1000	1381	TV1I	3382	3763	c	0.7143	0.71	1026
dya.U11.2.chrU	1387	1820	DNAREP1_DM	161	594	c	0.9267	0.93	3048
dya.U11.2.chrU	1836	1904	DNAREP1_DM	3	72	c	0.9028	0.90	527
dya.U11.2.chrU	1905	2199	QUASIMODO_I	3159	3459	c	0.7230	0.72	900
fru.U11.3.scaffold_1626	2054	2088	L1C_OC	4232	4266	d	0.8571	0.86	238
fru.U11.6.scaffold_1147	1737	1817	HATN11_DR	222	307	d	0.7470	0.75	273
gga.U11.1.chr23	18	199	CR1_GG	4122	4314	c	0.7258	0.73	652
gga.U11.1.chr23	461	627	MERMITEJ	507	670	c	0.7048	0.70	381
gga.U11.1.chr23	628	759	HRES1	666	792	d	0.6809	0.68	127
gga.U11.1.chr23	1591	1671	MER52A	45	123	d	0.7436	0.74	237
gga.U11.1.chr23	2106	2179	TREP102_LTR	722	791	d	0.7397	0.74	228
gga.U11.2.chr4	1162	2200	CR1_F	3963	4963	d	0.6657	0.67	3418
gga.U11.3.chr21	346	373	L1-4_DR	2529	2557	d	0.7111	0.71	80
gga.U11.3.chr21	374	469	HERV35I	206	302	c	0.6458	0.65	280
gga.U11.3.chr21	470	540	TCN2-LTR	673	747	c	0.7069	0.71	148
gga.U11.3.chr21	2068	2111	MIR3	153	195	c	0.8409	0.84	280
gga.U11.3.chr21	2114	2196	CR1_B	3759	3845	d	0.6824	0.68	277
gga.U11.4.chr11_random	2	69	LTR27	2	82	c	0.7857	0.79	229
gga.U11.4.chr11_random	951	1015	RETROSAT2_I	2553	2623	c	0.7121	0.71	230
gga.U11.4.chr11_random	2031	2200	CR1-Y3	1009	1182	d	0.8779	0.88	1213
gga.U11.8.chr27_random	1323	1385	SZ-10_I	1122	1187	d	0.7231	0.72	233
gga.U11.8.chr27_random	1930	2033	ZMCOPIA1_I	138	234	c	0.7172	0.72	250
gga.U11.9.chr13_random	143	1020	CR1-Y3	330	1202	d	0.8853	0.89	6218
gga.U11.9.chr13_random	1680	2180	CR1_GG	3036	3536	d	0.9261	0.93	4109
gnl|ti|307976921	42	75	ATENSPM3	5941	5974	c	0.8824	0.88	231
gnl|ti|307976921	380	751	piggyBac-N11_SP	4	395	c	0.8587	0.86	1917
hsa.U11.1.chr1	2	287	AluY	10	295	d	0.9380	0.94	2029
hsa.U11.1.chr1	715	765	OSTE21	307	357	c	0.8269	0.83	258
hsa.U11.1.chr1	1192	1258	Gypsy-20-LTR_DR	118	193	d	0.7647	0.76	229
hsa.U11.1.chr1	1277	1426	AluJo	7	156	d	0.6871	0.69	314
hsa.U11.1.chr1	1502	1687	AluSc	1	191	c	0.8883	0.89	1124
hsa.U11.1.chr1	1788	2092	AluSp	1	304	d	0.9193	0.92	1933
hsa.U11.1.chr1	2093	2187	L1ME_ORF2	2881	2983	d	0.7810	0.81	473
hsa.U11.2.chr10	1	286	AluSz	1	286	c	0.8622	0.86	1806
hsa.U11.2.chr10	288	364	MER30	1	84	c	0.9241	0.92	567
hsa.U11.2.chr10	580	889	AluSx	1	311	c	0.9223	0.92	2003
hsa.U11.2.chr10	1163	1457	AluY	1	297	c	0.8972	0.90	1927
hsa.U11.2.chr10	1463	1761	AluSz	2	305	c	0.8429	0.84	1634
hsa.U11.2.chr10	1810	1935	GOLEM_B	950	1082	c	0.6867	0.69	345
hsa.U11.2.chr10	1936	2127	AluJb	113	303	d	0.7514	0.75	636
hsa.U11.2.chr10	2128	2195	AluS	144	203	d	0.9062	0.91	466
hsa.U11.3.chr11	28	99	L2B	277	354	c	0.6025	0.61	71
hsa.U11.3.chr11	100	364	L2A	2851	3139	c	0.6434	0.65	537
hsa.U11.3.chr11	388	487	L2A	2672	2773	c	0.7100	0.71	297
hsa.U11.3.chr11	609	1549	L1PA16	36	909	d	0.8841	0.88	6295
hsa.U11.3.chr11	1713	1831	MLT1B	1	118	d	0.8739	0.87	779
hsa.U11.3.chr11	1965	2116	MLT1J	170	317	d	0.6933	0.70	547
hsa.U11.3.chr11	2159	2200	ALU	1	42	d	0.8333	0.83	225
hsa.U11.4.chr8	1	181	AluSp	122	302	d	0.8773	0.88	1037
hsa.U11.4.chr8	182	403	CHARLIE5	2374	2612	d	0.7773	0.78	1046
hsa.U11.4.chr8	497	579	MER117	29	117	d	0.6824	0.71	243
hsa.U11.4.chr8	1196	1384	GOLEM_B	928	1114	c	0.6667	0.67	540
hsa.U11.4.chr8	1385	1509	AluSz	1	125	d	0.8240	0.82	716
hsa.U11.4.chr8	1696	1777	L2A	3226	3309	d	0.7500	0.75	346
hsa.U11.4.chr8	1896	1959	HERVS71	1562	1630	c	0.7612	0.76	252
hsa.U11.5.chr8	441	645	L1P_MA2	6433	6638	d	0.6986	0.71	682
hsa.U11.5.chr8	646	1002	L1MB4	5	357	d	0.7837	0.78	1857
hsa.U11.5.chr8	1146	1426	L1MB3	340	621	d	0.8085	0.81	1586
hsa.U11.5.chr8	1429	1598	LTR48	617	782	c	0.7500	0.75	600
hsa.U11.5.chr8	1687	1736	MIR3	155	205	c	0.7451	0.75	237
hsa.U11.6.chr17	1772	1864	HERV30I	1865	1966	c	0.7245	0.72	253
hsa.U11.6.chr17	2103	2200	AluS	205	301	c	0.8875	0.89	548
hsa.U11.7.chr14	1113	1509	MSTA	1	428	c	0.8412	0.84	2389
hsa.U11.7.chr14	1552	1579	CRE2	187	214	d	0.9643	0.96	230
hsa.U11.8.chr21	302	421	MIR3	59	180	c	0.6721	0.67	295
hsa.U11.8.chr21	715	1334	MER31I	3330	3894	c	0.7443	0.74	2260
hsa.U11.8.chr21	1335	1642	AluYf2	1	309	c	0.9789	0.98	2239
hsa.U11.8.chr21	1735	1848	MER31I	3181	3288	c	0.7523	0.75	453
hsa.U11.9.chr5_random	1	269	L1PREC1	2145	2413	d	0.9145	0.91	2088
hsa.U11.9.chr5_random	278	1988	L1PA7_5	2	1727	d	0.9045	0.91	13325
hsa.U11.9.chr5_random	1989	2200	L1HS	1290	1493	d	0.8067	0.81	1082
lcl|Contig62_Contig4544:78777-80976	222	327	TART	697	799	c	0.7143	0.71	262
lcl|Contig62_Contig4544:78777-80976	847	883	ZAM_I	615	651	d	0.8108	0.81	234
lcl|Contig62_Contig4544:78777-80976	1225	1271	SC-4	1990	2035	c	0.8298	0.83	239
lcl|Contig62_Contig4544:78777-80976	1478	1534	ATHATN3	492	552	d	0.7458	0.75	228
lcl|chr15:51459567-51461766	31	152	RMER17B	322	446	d	0.6860	0.69	265
lcl|chr15:51459567-51461766	327	409	RMER17B	338	435	d	0.7529	0.75	280
lcl|chr15:51459567-51461766	1164	1249	VANDAL17	5909	5999	d	0.7191	0.72	234
lcl|chr15:51459567-51461766	1592	2200	LX	439	1054	c	0.8306	0.85	3958
lcl|chr2:31329164-31331363	1140	1202	SVA	122	179	d	0.6480	0.65	90
lcl|chr2:31329164-31331363	1222	1337	B1	20	133	c	0.8448	0.84	713
lcl|chr2:31329164-31331363	1338	1379	RSINE2	70	111	c	0.7073	0.71	89
lcl|chr2:31329164-31331363	1380	1442	BC1	6	70	c	0.7231	0.72	231
lcl|chr2:31329164-31331363	1815	1867	L1MA4A	721	772	d	0.7547	0.75	238
lcl|chr3_random:411470-413669	1549	1680	Sat-CR1_GG	607	747	d	0.7868	0.79	619
mdo.U11.3.scaffold_13440	420	651	MIR	21	252	d	0.6930	0.70	601
mdo.U11.3.scaffold_13440	652	687	CANDYSTRIPE1	12940	12976	c	0.7544	0.75	153
mdo.U11.3.scaffold_13440	893	1008	L2A	3172	3294	c	0.6923	0.69	354
mmu.U11.1.chr4	21	191	AluJ	3	195	c	0.6875	0.69	407
mmu.U11.1.chr4	229	363	B1	1	135	c	0.9407	0.94	1168
mmu.U11.1.chr4	540	573	B3	47	81	d	0.8286	0.83	228
mmu.U11.1.chr4	1298	1430	B1	3	135	d	0.8722	0.87	937
mmu.U11.1.chr4	1577	1763	B2	1	194	d	0.9153	0.92	1410
mmu.U11.1.chr4	1775	1867	SINEB2_MU	1	94	c	0.7660	0.77	473
mmu.U11.1.chr4	2022	2051	MEGY-LTR_MT	467	497	d	0.7959	0.80	156
mmu.U11.1.chr4	2052	2191	B2	55	208	c	0.9091	0.91	959
mmu.U11.2.chrX	334	464	B1F	1	148	d	0.6642	0.66	276
mmu.U11.2.chrX	536	570	L1-10_DR	1485	1519	d	0.7818	0.78	175
mmu.U11.2.chrX	571	605	ATHILA_I	6713	6747	c	1.0000	1.00	317
mmu.U11.2.chrX	614	746	B1	2	134	c	0.9474	0.95	1176
mmu.U11.2.chrX	750	820	MER3	1	71	c	0.7183	0.72	332
mmu.U11.2.chrX	1176	1250	L1ME3	508	584	d	0.7237	0.72	264
mmu.U11.2.chrX	1441	1570	B1	1	134	c	0.9542	0.95	1133
mmu.U11.2.chrX	1579	1910	MSTD	60	396	d	0.6687	0.67	849
mmu.U11.2.chrX	1951	2200	RLTR9A	96	363	c	0.8196	0.82	1307
mmu.U11.3.chr18	2	36	MDR2	5679	5714	d	0.6842	0.68	136
mmu.U11.3.chr18	52	193	CR1-9_SP	2134	2278	c	0.7517	0.75	582
mmu.U11.3.chr18	194	321	CR1-9_SP	2134	2267	c	0.7483	0.75	517
mmu.U11.3.chr18	322	386	CLAUDIA1_TM	2315	2379	d	0.8506	0.85	382
mmu.U11.3.chr18	622	728	B3	6	112	d	0.6916	0.69	425
mmu.U11.3.chr18	732	1005	L1_MM	6105	6383	d	0.9094	0.91	2049
mmu.U11.3.chr18	1722	1904	LX	853	1054	c	0.8298	0.86	987
mmu.U11.3.chr18	1905	2087	LX	671	853	d	0.7978	0.82	1099
mmu.U11.4.chr14	1	59	B1	10	77	c	0.9180	0.92	413
mmu.U11.4.chr14	212	326	ZMCOPIA1_I	139	254	c	0.6783	0.68	229
mmu.U11.4.chr14	1243	1343	ERVB1_1-I_RN	5446	5551	d	0.6893	0.69	335
mmu.U11.4.chr14	1936	2030	AluJo	8	126	d	0.6842	0.68	0
mmu.U11.4.chr14	2031	2139	B1F	3	112	d	0.7182	0.72	431
mmu.U11.4.chr14	2153	2201	SINEB2_MU	4	52	d	0.8163	0.82	292
mmu.U11.5.chrX	128	213	MLT1A1	302	391	d	0.6854	0.69	227
mmu.U11.5.chrX	387	984	L1_MM	5053	5674	d	0.8609	0.86	3907
mmu.U11.5.chrX	1146	1226	TDR7	252	333	c	0.7473	0.76	273
mmu.U11.5.chrX	1227	2006	LX	274	1054	d	0.8629	0.88	5222
mmu.U11.5.chrX	2051	2092	L1_MM	6009	6050	c	0.9762	0.98	372
mmu.U11.5.chrX	2115	2199	L1MA9	23	117	c	0.7442	0.74	286
mmu.U11.6.chr11	2	93	B1F	21	142	d	0.7835	0.78	279
mmu.U11.7.chr15	157	181	CERV2_INT	1007	1035	d	0.7403	0.74	91
mmu.U11.7.chr15	182	233	BGLII	173	230	c	0.8113	0.81	263
mmu.U11.7.chr15	1850	2114	LX9	571	846	c	0.6531	0.66	694
mmu.U11.8.chr12	1	837	L1_MM	5539	6389	d	0.8045	0.80	4370
mmu.U11.8.chr12	1017	1079	RLTR15B_MM	5	67	d	0.6984	0.71	244
mmu.U11.8.chr12	1551	1751	L1_MM	6186	6385	d	0.7900	0.79	856
mmu.U11.8.chr12	1989	2043	CUMULE	2032	2088	d	0.7500	0.75	232
mmu.U11.9.chrUn_random	1	809	LX	155	1054	d	0.7907	0.80	4934
mmu.U11.9.chrUn_random	1017	1079	RLTR15B_MM	5	67	d	0.7143	0.73	258
mmu.U11.9.chrUn_random	1547	1727	L1_MM	6186	6368	d	0.7717	0.77	776
mmu.U11.9.chrUn_random	1984	2038	CUMULE	2032	2088	d	0.7857	0.79	270
ptr.U11.1.chr1	5	81	AluJo	1	101	c	0.8333	0.83	316
ptr.U11.1.chr1	83	109	MEN	99	126	d	0.7113	0.71	115
ptr.U11.1.chr1	110	402	AluY	1	294	d	0.9468	0.95	2151
ptr.U11.1.chr1	827	877	OSTE21	307	357	c	0.8269	0.83	258
ptr.U11.1.chr1	1878	2180	AluSz	3	307	d	0.8577	0.86	1656
ptr.U11.2.chr7	1	180	AluSp	122	301	d	0.8712	0.87	1015
ptr.U11.2.chr7	181	403	CHARLIE5	2374	2612	d	0.7835	0.78	1069
ptr.U11.2.chr7	497	579	MER117	29	117	d	0.6824	0.71	243
ptr.U11.2.chr7	1192	1385	GOLEM_B	928	1118	c	0.6701	0.67	529
ptr.U11.2.chr7	1386	1510	AluJ	1	125	d	0.8240	0.82	732
ptr.U11.2.chr7	1697	1778	L2A	3226	3309	d	0.7500	0.75	346
ptr.U11.2.chr7	1897	1960	HERVS71	1562	1630	c	0.7612	0.76	252
ptr.U11.3.chr8	2	298	AluSz	1	297	c	0.8657	0.87	1817
ptr.U11.3.chr8	300	376	MER30	1	84	c	0.9241	0.92	567
ptr.U11.3.chr8	583	889	AluSp	1	307	c	0.8908	0.89	1851
ptr.U11.3.chr8	1160	1459	AluY	1	302	c	0.8936	0.89	1916
ptr.U11.3.chr8	1465	1759	AluSz	2	301	c	0.8536	0.85	1672
ptr.U11.3.chr8	1808	1956	GOLEM_B	929	1082	c	0.6800	0.69	403
ptr.U11.3.chr8	1958	2199	AluJo	1	213	d	0.7617	0.76	718
ptr.U11.4.chr9	24	95	L2B	277	354	c	0.6025	0.61	68
ptr.U11.4.chr9	96	360	L2A	2851	3139	c	0.6434	0.65	537
ptr.U11.4.chr9	384	483	L2A	2672	2773	c	0.7100	0.71	297
ptr.U11.4.chr9	609	1537	L1PB4	36	900	d	0.8235	0.82	5123
ptr.U11.4.chr9	1715	1833	MLT1B	1	118	d	0.8908	0.89	806
ptr.U11.4.chr9	1966	2117	MLT1J	170	317	d	0.6867	0.69	530
ptr.U11.4.chr9	2160	2200	ALU	1	41	d	0.8293	0.83	217
ptr.U11.5.chr19_random	1771	1839	ERVB7_1-I_MM	2367	2434	c	0.7571	0.76	233
ptr.U11.5.chr19_random	2098	2199	AluS	201	301	c	0.8810	0.88	572
ptr.U11.6.chr15	1114	1513	MSTA	1	428	c	0.8247	0.82	2275
ptr.U11.6.chr15	1535	1596	L1MC3	1726	1792	d	0.7500	0.75	226
ptr.U11.7.chr22	301	420	MIR3	59	180	c	0.6748	0.67	305
ptr.U11.7.chr22	715	1334	MER31I	3330	3894	c	0.7365	0.73	2160
ptr.U11.7.chr22	1335	1637	AluYf2	1	305	c	0.9859	0.99	2255
ptr.U11.7.chr22	1730	1843	MER31I	3181	3288	c	0.7523	0.75	453
ptr.U11.9.chr12_random	4	723	L1MC2	1	758	c	0.8422	0.84	4091
ptr.U11.9.chr12_random	724	995	L1ME_ORF2	2859	3144	c	0.7700	0.78	1318
ptr.U11.9.chr12_random	996	1111	AluJo	156	282	c	0.8393	0.84	590
ptr.U11.9.chr12_random	1112	1504	L1ME_ORF2	2245	2644	c	0.7419	0.75	1647
ptr.U11.9.chr12_random	1829	1912	L2A	2978	3061	d	0.7294	0.74	369
ptr.U11.9.chr12_random	1967	2118	MER30	1	143	d	0.8681	0.87	946
ptr.U11.9.chr12_random	2119	2200	AluSx	1	82	d	0.8537	0.85	505
rno.U11.1.chr9	14	368	MTD	43	404	d	0.6789	0.70	828
rno.U11.1.chr9	1912	2196	MLT1F2	61	356	c	0.6167	0.62	354
rno.U11.2.chr4	2	1974	L1_RN	4600	6384	d	0.9265	0.92	15037
rno.U11.2.chr4	1977	2058	UVIR_DV	473	564	c	0.7789	0.79	301
rno.U11.2.chr4	2059	2200	LX	515	656	d	0.8028	0.81	790
rno.U11.3.chr10	396	513	B1	9	125	d	0.7034	0.70	480
rno.U11.3.chr10	683	744	B1	70	134	d	0.7656	0.77	268
rno.U11.3.chr10	762	885	B2	1	125	d	0.8320	0.83	773
rno.U11.3.chr10	927	969	ERVB5_4-I_RN	3422	3465	c	0.9545	0.95	368
rno.U11.3.chr10	1233	1349	B1F	21	151	d	0.7417	0.74	389
rno.U11.3.chr10	1398	1472	GYPSY39-I_AG	4838	4928	c	0.7654	0.77	245
rno.U11.3.chr10	1487	1621	B1	1	134	c	0.8148	0.81	863
rno.U11.3.chr10	1657	1799	B3A	60	198	c	0.6934	0.69	370
rno.U11.3.chr10	1823	1952	ERVB5_4-I_RN	3418	3526	c	0.9369	0.94	772
rno.U11.3.chr10	2140	2190	MUSID3	3	52	d	0.7647	0.76	264
rno.U11.4.chrX	28	88	MUDR	564	619	d	0.7966	0.80	258
rno.U11.4.chrX	1563	1611	GYPSY13-LTR_AG	154	204	d	0.8000	0.80	253
rno.U11.4.chrX	1779	1872	HELITRON8_OS	7710	7808	c	0.7083	0.71	250
rno.U11.4.chrX	2040	2118	DNA-2-3_DR	1322	1411	c	0.8415	0.84	378
rno.U11.4.chrX	2136	2176	HATN11_DR	218	258	c	0.8571	0.86	238
rno.U11.5.chr1	150	272	SINEB1_MU	4	132	c	0.7273	0.73	366
rno.U11.5.chr1	876	920	L1-3_DR	2128	2171	c	0.8000	0.80	231
rno.U11.5.chr1	1151	1195	SZ-64	5208	5249	d	0.6991	0.70	95
rno.U11.5.chr1	1204	1308	MDR2	5685	5789	c	0.7170	0.72	399
rno.U11.5.chr1	1309	1364	TIGGER2	2340	2393	d	0.6598	0.66	160
rno.U11.5.chr1	2058	2179	B1	11	135	c	0.7724	0.77	679
rno.U11.6.chr6	296	409	MIR	9	132	c	0.6752	0.68	283
rno.U11.6.chr6	437	521	HATN11_DR	222	321	c	0.7802	0.78	312
rno.U11.6.chr6	522	562	HATN11_DR	237	282	c	0.7282	0.73	125
rno.U11.6.chr6	571	611	HARBINGER1_DR	2785	2826	c	0.9048	0.90	296
rno.U11.6.chr6	612	880	RSINE2A	2	289	c	0.6477	0.65	234
rno.U11.6.chr6	910	953	SINEB1_MU	34	78	c	0.8000	0.80	237
rno.U11.6.chr6	1208	1282	B1F	12	91	d	0.7922	0.79	397
rno.U11.6.chr6	1577	1682	ERVB5_4-I_RN	3421	3526	d	0.9057	0.91	842
rno.U11.6.chr6	1694	1827	B1	1	134	d	0.7926	0.79	762
rno.U11.7.chr16	148	291	URR1	1	145	c	0.8690	0.87	986
rno.U11.7.chr16	1442	1560	SZ-67LTR	397	498	c	0.7570	0.76	230
rno.U11.7.chr16	1684	1733	VANDAL1N1	334	381	d	0.8367	0.84	227
rno.U11.7.chr16	1850	1950	RMER12	792	885	d	0.7216	0.72	228
rno.U11.8.chr10	43	98	AluJo	82	137	d	0.8036	0.80	215
rno.U11.9.chr17	111	298	RSINE1	4	177	d	0.6798	0.68	399
rno.U11.9.chr17	328	660	ORR1A	11	325	c	0.8540	0.86	1910
rno.U11.9.chr17	792	873	CANDYSTRIPE1	4641	4712	d	0.7162	0.72	254
rno.U11.9.chr17	874	930	MAX_I	514	568	d	0.7083	0.71	112
rno.U11.9.chr17	1202	1228	CR1-5_SP	4148	4174	d	0.9630	0.96	236
rno.U11.9.chr17	1428	1547	ORR1D	32	141	c	0.7054	0.71	323
spu.U11.1.gnl|ti|330798991	799	904	MDR2	5680	5792	c	0.6636	0.66	269
spu.U11.1.gnl|ti|330798991	1019	1136	GYCUME1_LTR	544	660	d	0.7328	0.73	351
spu.U11.1.gnl|ti|330798991	1137	1208	SZ-64	5241	5316	d	0.6824	0.68	212
spu.U11.2.gnl|ti|252663728	485	590	MDR2	5680	5792	c	0.6636	0.66	269
spu.U11.2.gnl|ti|252663728	707	835	HERVIP10FH	741	884	c	0.6889	0.69	316
spu.U11.2.gnl|ti|252663728	836	870	ATMU1	4273	4311	d	0.7054	0.71	80
spu.U11.5.gnl|ti|257943862	658	1029	piggyBac-N11_SP	4	395	c	0.8587	0.86	1917
spu.U11.7.gnl|ti|299077911	128	179	RMER17B	403	449	c	0.8333	0.83	247
spu.U11.7.gnl|ti|299077911	351	423	HERVIP10FH	791	860	d	0.8056	0.81	333
spu.U11.7.gnl|ti|299077911	618	654	ATENSPM3	5941	5977	c	0.8649	0.86	241
spu.U11.7.gnl|ti|299077911	959	1073	piggyBac-N11_SP	288	395	c	0.8818	0.88	682
spu.U11.8.gnl|ti|299077986	65	161	COPIA2-I_LC	5274	5375	c	0.7374	0.74	250
spu.U11.8.gnl|ti|299077986	336	372	ATENSPM3	5941	5977	c	0.8649	0.86	241
spu.U11.8.gnl|ti|299077986	677	1038	piggyBac-N11_SP	13	395	c	0.8603	0.86	1878
tni.U11.1.chr21	1765	2142	MERMITEA	663	1005	c	0.6854	0.69	299
tni.U11.3.chr2	591	624	HERV15I	560	593	d	0.8529	0.85	228

Masked Sequence

>aga.U11.1.chr3L
AGTATCCTAAATTGAGCTTAATAACGCCGCCCATCGATAGCGTGTTTGATATAAAACACACGGAACACGG
TTTTCATTGCTGTGCCTTACATTATCAAACCGCGTGGAGGAACGAATCGCGTGCAATGGAGTGTATAATT
TAGAGCAAATTTTCACTGGCAAATGCTTATCGTTCAGTGCACCCTGCGCTGTAGGTAAACTTTCAAACGT
GGTTCACCCAGCACGCATTTTTACGCTGCAAGTATATTTAGACTTTTCTATCCAGGGGATGTAGTCGTCT
AGAATAAGAGGAATGTTTAAATAGAACAACATTTAATCGTATTTTTAGCATTCAGTTTCAAACATATTCT
AACTGGTTTTTGGTGTTCTGAAGAAAAGAGCTTGACCTGCATATAGCTAAGCCGATGATACAATCGTTTA
ATATACTCATTGTGGAATAAGCAGGACTTTAAAAGAACGTCGAAGCCAGCAGCGTTTTTTTAATAATCTG
TGGCATGCTGTTGTAAAATAGCGCTTGCTTGCTTAGCTAAATTTGTAGCTAAAATATATATTATCCCAAA
TATTGGAATTATTTTGGCTACTTTTAAATGAACCAAATCTGGTTCTTAAATTTCATTTAAAATGTATCCC
CAAAATTACACTAAAATATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAATAAACTTTAAATTAAAATTCAATTTAAATTTTAATAATATAGCCTTCTTTCTGAAGAATT
GTGTATGAAAATGTTAAATCTGCATCTATTAGAAGATAATTAGCCCGCCGCATAGTCGTCACTCGGGAGC
ATCATCTAACGCTGAAGCGCCCGCCAATGTCTTCGTACATAAATAGATGTTATGCATCGCTAGCGCAGCA
TGTTGCGCGTTAGTATGGTAAGGGTTGTGCGTCGTGCGTGCGGGTTCAATAAAAGGGTGCTTGCTTTTCT
ACGCTTTTGTATGGCACATCTGTGCGGCGCCGAGCTCGGTTGAGTCCGGCCAGGTGTCCCTACCGGTGGG
GTATGGCTATCAAGACATATCCAGCACGTAATTTTTGACCCCGGAAGGCAGTTGACTCGCAACTCTGCGT
CGACGCCTTCGACTCTCTTGCACACGAAATGCTGGCTGCTGTGTCCTTCCCCCTGTGTGTGTTACCACCT
CTCAGCCCTTCATGGTTCTACTACTCTGCTCCGTACTCCTCTCTCATCCATTGTGTCAGATCACATTGCT
ACCGAAAATTGGCAACAACAACACCGCTTACGTTCGAAATATCCTATTCTATTCCTCTTATTTTCTTGTT
TTTTTTTTCTTTCTCCAAACTATAGGAATCAAGGGTGGTTCTTCCTCGGCCAAAAGCTCACCCCACTCTA
CGCCCACCAAAAAAGTTCGATCTCAGCAGCAAGGGAGCAGTATCCCGCTAGGTACAGCCGGCAAGTCAGT
CCGCGAACATGTTGAGTAAATAGGGTTCGAGGTACAAAACTAAGCGCGCACTGCTCGCAATAGGGAATAG
CTTTCCTTACACCACTTTCACGTTTTCCGTTTAACCAGCAGTTACACTAGTTCGTTCGTACGCTGCATGC
TTGCTGCAGCATGCGAACCATTTTTAATACCTCCTTTCCGAATCCTACTTGCTTGTTAATCCATTTCTAA
AAGAATTGCAATACGTAGGAAGGAAGACGTAGACTGTAAGATGTGTGTACCATCTTTCTTTCGGGTTTTG
TTTTTAAACATACACACAACTGTTCGAAACCAAATAGAGCTTGGCACAGGGAAGTAGAAGAATCCATACA
GACGCTCGCAGGAGCTCGGCTGGAGTTGGCACTCCTTAGCGCTTGAGCCAAACCAACAGCCAGCGCCCGA
AATACTCTTACCATGCTCTGCTTAGTATGTTAGCTTTCGTTTGTTTTAGGTTAATGTGCCTGTTTTTTTG
TTTGTTTGTTTAGCTAGTTATGTTTGAAAATTATGAAAAAATGCTTCCCTGCCCTGCTACTGCTGCGTAT
TTCGTGCGTATGTCTGCTCCCCGCAAGGGGTAAACGGTGTAACACTGTTTACCTGTTGCTTGTTTTTAGG
CGTAGTTAACAATCTATCAGTGCACACTATCGACAAATCTTACCGTATTCTATCGTTTTCTCTATCACCC
GCTGTTGAGATATATGCTATTAGACAAACA
>aga.U11.2.chrU
CACGGTTTTCATTGCTGTGCCTTACATTATCAAACCGCGCGGAGGAACGAATCGCGTGCAATGGAGTGTA
TAATTTAGGGCAAATTTTCACTGGCAAATGCTGCTTATCGTTCAGTGCACCCTGCGCTGTAGGTAAACTT
TCAAACGTGGTTCACCCAGCACGCATTTTTACGCTGCAAGTATATTTAGACATTTCTATCCAGGGGATGA
AGCCGTCTAGAATAAGGGGAATGTTTAAATAGAACAACATTTAATCGTATTTTTAGCATTCAGTTTCAAA
CATATTCTAACTGGTTTTTGGTGTTTTGAAGAGAAGAGCTTGAGCTGCATATAGCTATCGTTTCTCGTTT
CGTTTATAATCGTTAATTATAACGTTAATTATTTCTCGTTTATAAGCGATAATCGTTTATTGTACTCATT
GTGGAATAAGCAGGACTTAAAAAGAATGTCGAAGCCAGCAGCGTCTCTTTTAAATAATCTTTGGCATGCT
GCAGTAAAAATAGCGCTTGCTTGCTTAGCTAAATGTGTAGCTAAAATATATATTATCCCAAATAGGAAAT
ATTTTGGATATTTTCAAATGAACCAAATCTGGTTCTTAAATTTCATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATTATCTATAAAGTTG
TTAAATGTAAATGTTAAATCTGCATCTCTAAGAAGATAATAAGCCCGCCGCGTAGTCGTCACTCGGGAGC
ATCATCTAACGCTGAAGCGCCCGCCAATGCCTGCGTACATAAATAGATGTTATGCATCGCTAGCGCAGCA
TGTTGCGCGTTAGTATGGTAAGGGTTGTGTGTCGTGCGTGCGGGTTCAATAAAAGGGTGCTTGCTTTTCT
ACGCTTTTGTATGGCACATCTGTGCGGCGCCGAGCTCGGTTGAGTCCGGCCAGGTGTCCGTACCGGTGGG
GTATGGCTATCAAGACATATCCAGCACGTAATTTTTGACCCCGGAAGGCAGTTGACTCGCTCCTCTGCGT
CGACGCCTTCGACTCTCTTGCACACGAAATGCTGACTGATGTGTGTGTCCTTCCTCCTGTGTGTGTTACC
AGCCCTTCATGGTTCTACCACTCTGCTCCGTACTCCTCTCATCCATTGTGTCAGATCACATTGCTACCGA
AAATTGGCAACAACAACACCGCTTACGTTCGAAATATCCTATTCTATTCCTCTTATTTTCTTGTTTTTTT
TTTCTTTCTCCAAACTATAGGAATCAAGGGTGGTTCTTCCTCGGCCAAAAGCTCACCCCACTCTACGCCC
ACCAAAAAAGTTCGATCTCAGCAGCAAGGGAGCAGTATCCCGCTAGGTACAGCCGGCAAGTCAGTCCGCG
AACATGTTGAGTAAATAGGGGTCGAGGTGCAAAACTAAGCACGCACTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>aga.U11.3.chrM
TTTTTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGTAAAATTTGTGCCAGCTACTGCGGTTATACAAATGATGCAAATAAAAAT
TTTTAGTATTAGTTAAATTGTTTATAATTATTTAATTTATATATAAATTTATTAGGTGAAATTTTTAAAT
TTATTTATTATTAAAATGTAGATTAATTTAAGCTATAAAAATTTTATAATAAACTAGGATTAGATACCCT
ATTATTAAAATTAAATATATAAGAATACTTAAGTAGTATTAGTTATATTCTTAAAATTTAAAGAATTTGG
CGGTGTTTTAGTCTATTTAGAGGAATCTGTTCTGTAATTGATAATCCACGTTGGACCTCACTTAATTTTG
TTTTCAATTTGTATATCGCCGTCATCAGAATATATTATAAGATTAATAATTTTCTTGATATTTCATTAAA
TAATATGTCAGGTCAAGGTGCAGTTTATGGTTAAGTAGAAATGGATTACAATAAATATATTTATACGGAT
AATTTTTTGAAATAAAAATTTGAAGGTGGATTTAATAGTAATATAAAATAGATTATTTATATGATTATAG
CTCTAAAACATGCACACATCGCCCGTCGCTCTCATTTTTAAAATGAGATAAGTCGTAACATAGTAGATGT
ACTGGAAAGTGTATCTAGAATGACAATTTAAAGCTTAATTAGTAAAGTATTTCATTTACATTGAAAAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAAAAGAATATTGAAATAATTTGAAAAATTTTTAATTTTTAAGAAAATTTAATTTATTGTACCTT
GTGTATCAGGGTTTATTAAATAATAAATTATTATAATAATTTTTCTCGAATTTTAAAGATTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAATTTGATAGGTTTTAATGAAGAATTCGGCAAATTAAATATATTCACCTG
TTTAACAAAAACATGTCTTTTTGTATTTTATTTAAAGTCTAGCCTGCCCACTGAGTTTTAAAGGGCCGCG
GTATTTTGACCGTGCGAAGGTAGCATAATCAATAGTCTTTTAATTGAAGGCTGGTATGAATGGTTGAATG
AGATATATACTGTTTTTTTAAAATTTATATAGAACTTTATTTTTTAGTTAAAAAGCTAAAATTTAATTAA
AAGACGAGAAGACCCTATAGATCTTTATTTTTATAAATTATAAATTATAAAGAATTTTAAAATTTATATT
TTAAATAAAATTTTACTGGGGTGGTATTAAAATTAAATAAACTTTTATTATTTATTTACATTGATTTATG
AATAAAAGATCCTGTTTTATGGATTAAAAATTTAAGTTACCTTAGGGATAACAGCGTAATTTTTTTAGAG
AGTTCATATCGATAAAAAAGATTGCGACCTCGATGTTGGATTAAGAGTTATTTTTAGGTGTAGAAGTTTA
AAGTTTAGGTCTGTTCGACCTTTGAATTCTTACATGATCTGAGTTCAAACCGGCGTAAGCCAGGTTGGTT
TCTATCTTTAATAAATTATTATATTGTAGT
>bta.U11.1.SCAFFOLD255372
AGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTAACTTTAAGAAATGTCA
GAGAAACTACAGAAAGCCAGGACTATATTTTTAAAATAGTCTTAATTGCACAAGTAACAAAATATATAAT
AAAATAATCGTTATGGGTTTTTAACAAAACATAAGTAAATCTAAAGTTTTGTGTGTCTGTACCCAGACTC
CTTTCCAGCATTAATCATTAATATGTATTAATACAAATATGTAGCCATAAAAAATAAAGCACTGGGTTTT
GTATGCACACATGTGCTTTTTATTACGTCAGTGATATCATGCGGTACCCTATTCAACACATTTTTCACTC
AGTTTTTAAATATTTGTTGATAAAGCACAGTATTTTTTGTTTGTTTTCTTACGTTAATGGTATCACGTTG
TACCTTATTCTACTGCTTTTATCAATCTGTGTATTTTGATGTCCAATTAACTCCTTGGAAGTGCAGCAGA
TGGCATTCCACTATAAACCCACCACATTCTGCTGTTCGTTGCTGTATAGGTGAAGGTTAAATTGCTCCCA
GTCTTTTGATCTTACAGTGATCCGACCCCTCCAGTGCTCGTGTGGCCGCTTCGGGGTGAACGCCTAGGAG
TAGCACAAGTTGTGCATTTTCAATTTTAATAGGGTGAGATTTGAGTCTTCCCCAGATAGGTACGTGTATC
TACCGGAAAGTCAGTCTCGCAGCGCAGCTCCCGCGCAGTGGAGAATCGCGCTCCTTCCTACAAACCCCTC
CCCTACGCTTCCCTGAGCACCCGCAGGCACCTTCCCAGCAAGCACCGCGCATATTTGCATACGACTCAAG
CCTCTGCTTTTATTTTAAATAAAAATCCAAAGACAGATGATAGAGTCTCCTTATGAAGACTTCTCTCCCT
TTCAGAAGGGTCTGCCGTTACATCTTCAACTTTGGGAACTCTGAATGGAAAACTGCATCGACTTTATTTT
CACCTTTACCATAAAAGGGATTTGCCGACACTGCCACCCTGCTTTGGAAGCCGGAAAAGCAAAAAGGGCT
TCTGTCGTGAGTGGCACACGTAGGGCAGCTCGTTTGCTCTACGTGCGGAATCGACATCAAGAGATTTCGG
AAGCATAATTTTTGGTAATAGGGCAGCTGGTGATCGTTGGTCCTGGCGCCCCCGCTTATGATGGTTATAA
AACAGAACTTGAAGTTAGTCCTTGTATTATTTCCTGGTATGAGCGGTTTTTCTCTTTTTTGTGTGTGGAT
GTTTTGAAACTCGGTTTTTGAAAACTTTAAATTTTTAAACAGAAAGATATGTGGAGTGAAGCAGTTTTGA
TTACCATTTTTTCCCTTTCGTGAGTTAGGAAGAGTAAATAGCGTGTTGGAATTTTTTTCCGCTAGACCAC
GCAGCCATAAGAGATGTTCACACTTTTCTTGGTTGGTTGCTTACCAGGGTAACGGAATCATAATACAAAG
CTAATTTTGTAAAAATTTCTTACTATATGTATACATTATCGGTTTCTAAGTTTGTGTTTATATTCTTCCT
GTAATTTATGCCCTTTGAAAAGAATCACTACTTTAAAACACCAGGTAAGTAGCACTCTTACTGTTGATAA
CGTTTTCGCAGAGCAGTTCATTAAGAGACACAAAAATGTAAAACCTTCAAAAAATTCATCTCATATGTTA
AATTATGTTTAAGAGGACATTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTGCGACCGAAAAAAAGAGAGCGAG
GTTTTGCTACAAGGATTCATTCCATTCGTTCTAACAACAAATTTGTAAGTGTTCTGCAATACAGGATGGT
CCCTCCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
AGCGCACTCCAAATCAGCGCACAGGTGGG
>bta.U11.2.SCAFFOLD291927
TATTCCAAAACAATGACACCATCTGAAAAGCAAACCTCTTTCTTTTGTTCTTAAAGAAATTACACCTAGT
CTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCTGTGTTCCCCAGAAGCTAGACATGGTGCAGCAAGAGAAGAATGGTCCTAATGAAAACACACAG
TTAAACTTACCTTATTTTTTTAAATTTAAATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTAAACCCACCTTAAAAAGGGTTTCTGTCACAAGAGGCACACGTAGGACAGCTCTTGTT
CTTTGCAGAATCAACATCAAGAGATTTTGGAAGTATAATTTTTTGGTTCTTGGGTAGCTGGTGATTGTTG
GTCCTGGCACCCTTTAAAAAAAAAAAAAAGCAAAACCAAACTTGGTAGAAATCAAGCTGGGGTTTCTATG
TTTGTTACTGAAGGGGAAGGAACTTTCTTTCCAGTGAGCTGAGAGGGTTATGTTTGGGTATCACCAGAGG
TTCTAAATTCCCATCCTGAGGGGACAGCTCCCAACTTTGGAGCAAGGGAGGCCCTGAGGTCCTGGAGGTG
ATAGGTGACCCCATCCTCGGATGGGGTGCAGGAGCTGTGTGGTCTGCAGCCTCAGTGAGCATTAGAGTAA
TGGACACTAAAGGGACAGTAAAACCCCGGTGGTTCAGTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTCTGTCTTTTGGTGTCCTTACATTTCTGTCTCC
TACTGATTAAATGAATGAAACTTCAAGCTCTAAGAGGAAAGGGGAGGTAGCCACTGGCTAGGAAGTTCAA
AACCACACTTTATGACCAAGGAACATAGATACTTTGAGTAGTCATCTTTTTTTTCAATCACTCTGAACTC
TATTCTGCTTTACAGATAAGAGGAAACCAAGGCTAAGAGAGGAAAGTAATGGCTCAGACGCACGAGGAAA
CACAGAAGTATAATTTGCAGACCCTGCCGTGTCATGTGGGTTTTCTAAGGACTGCCCAGGAACCCCTCCT
GTCCCCACTCCTCATCCACTCTCATCCCCAAGCACTTTTGTGACAATGAGTAGTGACTCCTTTCTCCATC
CCAAGTGGTTATCTTAACACTGAAGCCTTTAATTCTTCCTCTCGGGAACATGGATTTCTTCTATAACGTG
TAGCAAAGATGATCAAGCCAGACAACAGGAACATTGGCGGCTCAGATGCTCATCCCCAGTGGGAGACCAA
ACATACACATAACCAGGAAAAACTATACAC
>bta.U11.3.SCAFFOLD275400
CAAGGAAGAGATTGGATGCAGCACAACTCTCCTTAGGTTGATAAGGTCCGGAGTATCTTTCACTCTTTTT
CAGAGAGCGACCCAGATGAACCAGATTTCATCTCCAATGATGAGGAGGCCCCAGTCAACTCTGAATCCAG
AGAATTCTTGTAGAGTTTGTGCTCTTCCCCTTTGTGGGGACTTCCTACGTCATTCTGGAGGCCACGGAGA
GAATAGACATGGTGCCTTCTGCTGGAGCTAATAGGTGTGTGACCATCATCACTGGATCCTCGCGCTAGAC
TTTGCTGATAGATTTCCCTCAAAATGTTCCATCTCATCACGAGATCTCCTCAGCCAGGTATGTGCTCATC
CCCGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTGGG
CTCTAGACCATGGACACTTGTGGAACTGCCATCTAGCTTACCAAACTTAGAAGCATAGTGGCTTATTCAA
ATAGATGCTCTTCAAGTTTTTAAACCGTAAGTGCCCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACCTGCTCCAGTATTGCTTAATTTCTGGCCCTGGGGTCTCCACCCCTCAACACACA
CACTAGTCTTCTCTAAGGACTCCTTTGCTCATGCTTACAGGAAACTCCCACCCCTTTAACATTAAAAAGG
ACAAAAAAAAAAAAAAAAAAAAAAAGGGCTTCTGTCGTGAGTGGCACACATAGGGCAGCTCGTTTGCTCT
ACGTGTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGATTTC
GGAAGCATAATTTTTGCTAATACTTCAGCTGGTGATCGTTGGTCCTGGCGCCCTCCCCCCCCCCCAAAAA
AAAAAGGACATCATTCATGTTCACTTACCAGAGAAATACTCTCTTTACTATTTCAATTTTTCAATGGTCT
CTCCACACACTTGTGGCCCAGTTGAGGAATGGATTATAGAATATGACCCTCCTATGTTAGAGAGCCCAAG
GGGAAAAACCCCAGCTAAACTGAGTTCAGAATTACAGAAATTTTACTGGCCTAGATGATAGCCCAGTCCC
AGCCATGAAGCTAAAGCCAATTGTGTGTTTTAAATGCAACGACCTATTGTTTAATTAAAAAGTTCATTTT
CTATAAACAACACTTGATAGAAATCTCCTCATTATCATTACTACCCTGAGATATAAAGATTCTATTATTT
TATCCTTACCAAAAATAAAAGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTATCCTTATCATCATCATCTCTATCATA
TTAATCATTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCAGGCAGGTTCATTACTATTATCATAAATTATACATAACCTTAATATTCT
ATGTATAAGAACACACATTAAAGATATTCTTAATCATTGATATTTTAGGTCCTTATGTTTACTACTTAAG
AGATGCATCACTATATTTTAAATGATTTGGAGAACAACTCTGGCATTTGTCTTTATTTTTCTTACTTTTC
AATAAATTGAAAAAAATACATCAATGAAAG
>bta.U11.4.SCAFFOLD306532
GAACCATCATCATTACTTTTCTTGTTTAACTGCTTCTCCTTTGTCTTTTCATTTTCTCACTCCTCTAATT
AATAACTGCCTGTGTTTGCTCTCTGGAACACAGAGAAGGCCTTGGAGACCAAAGCTTTTATCTAAAAACA
AGAAAGAGGAGACAAGAAGGAGCTTTTGTACCTGGAAGGACTCCGCAGGGTCCTGCTCCTCTTCATCATT
AAGCCACTTGCTTGTCTTGCATTATAAATATTTAATAAGAAGATAATCAAATTATAGTTTTGCAAGAATC
TCTTGCTAGGATGCTATTAGGAAAAATAATGGTTTTTGAATATTTAAAAAATAGATATTAAGAAAGGGGT
CTTCTCTTACGAGTGCTGCATATAGGGCAGTTCGTTCTTCCTGAGGAATCAATATCAAGAAATTTTGGAA
GCATAATTTTTTTGTACTTAGGCAGCTGGTAATCATTGGTCCTGGTACCCCACCTCTCCCACAAAAAAAA
AAAATAGGTATAATGCTACTGCTGAAGCAATATTTTTTAAAGATAAAAATTTATCAGTCAGTAATGTTGT
TTCTTTCCTCTCCTTCATTCTTCTGCTTTTCTTCTTTCCTTTGTTATTTTCACCCATTACTTCCCTTTTG
TGTTTATATTATTTATTTTAGAGCTGTGTAACTTTAGAGGATGATCACTGCATTTTCATAGTCCAAACAT
TTTTGGGAAAAAGTTGTCATTTCAGAAAAGTAAGCTGTCACAATATTAATTTAATTTTACTTTTTTTCAT
TTTTTTAGAAAATGTAGCATTATCAAAATTAAACATATTTTTAGAAATATTTTTAAAGATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATTTTCCCATTGGCTGTTTCTGAG
GGGTTAGGAAAGAATCCATTATTTATTCTGTAGAATTCTCACATTTTGCATCTGGTTAATGAGTCCTCTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
>bta.U11.5.SCAFFOLD275400
AAGGTCCGGAGTATCTTTCACTCTTTTTCAGAGAGCGACCCAGATGAACCAGATTTCATCTCCAATGATG
AGGAGGCCCCAGTCAACTCTGAATCCAGAGAATTCTTGTAGAGTTTGTGCTCTTCCCCTTTGTGGGGACT
TCCTACGTCATTCTGGAGGCCACGGAGAGAATAGACATGGTGCCTTCTGCTGGAGCTAATAGGTGTGTGA
CCATCATCACTGGATCCTCGCGCTAGACTTTGCTGATAGATTTCCCTCAAAATGTTCCATCTCATCACGA
GATCTCCTCAGCCAGGTATGTGCTCATCCCCGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCACTGGGCTCTAGACCATGGACACTTGTGGAACTGCCATCTAGCTTACC
AAACTTAGAAGCATAGTGGCTTATTCAAATAGATGCTCTTCAAGTTTTTAAACCGTAAGTGCCCCCCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTGCTCCAGTATTGCTTAATTTCTGG
CCCTGGGGTCTCCACCCCTCAACACACACACTAGTCTTCTCTAAGGACTCCTTTGCTCATGCTTACAGGA
AACTCCCACCCCTTTAACATTAAAAAGGACAAAAAAAAAAAAAAAAAAAAAAAGGGCTTCTGTCGTGAGT
GGCACACATAGGGCAGCTCGTTTGCTCTACGTGTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAGAGATTTCGGAAGCATAATTTTTGCTAATACTTCAGCTGGTGATCGTTGG
TCCTGGCGCCCTCCCCCCCCCCCAAAAAAAAAAGGACATCATTCATGTTCACTTACCAGAGAAATACTCT
CTTTACTATTTCAATTTTTCAATGGTCTCTCCACACACTTGTGGCCCAGTTGAGGAATGGATTATAGAAT
ATGACCCTCCTATGTTAGAGAGCCCAAGGGGAAAAACCCCAGCTAAACTGAGTTCAGAATTACAGAAATT
TTACTGGCCTAGATGATAGCCCAGTCCCAGCCATGAAGCTAAAGCCAATTGTGTGTTTTAAATGCAACGA
CCTATTGTTTAATTAAAAAGTTCATTTTCTATAAACAACACTTGATAGAAATCTCCTCATTATCATTACT
ACCCTGAGATATAAAGATTCTATTATTTTATCCTTACCAAAAATAAAAGCTTGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAT
TATCCTTATCATCATCATCTCTATCATATTAATCATTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGGCAGGTTCATTACTATTAT
CATAAATTATACATAACCTTAATATTCTATGTATAAGAACACACATTAAAGATATTCTTAATCATTGATA
TTTTAGGTCCTTATGTTTACTACTTAAGAGATGCATCACTATATTTTAAATGATTTGGAGAACAACTCTG
GCATTTGTCTTTATTTTTCTTACTTTTCAATAAATTGAAAAAAATACATCAATGAAAGCATCAAGGCACA
AAAATTGTGTTCAGTGTTTTATATTAATA
>cfa.U11.1.chr2
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTTTGC
TTTTTAAAATAATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTTAAAGGTTAAAGTATGTGGCATTA
GAAAATATACAGCACTGTTTTATGTAATATGCTCTTTATTAATGATATGTGAGCCTATTCAACCACTTTT
ATATCTGTTGATAAAGATCTACTTTAACCAATCCAAATTTAGCATTGCTTTTGTTCCCCTTCACCTTAAT
GGTCATCACGCTGTACCTGATTCTGCAACTCAGTACTCAGTGGTGTTTGGTGTCTAATTCACTTCTTGGC
AGCGCAGCAGATACCATTCATTCCACTTGAAGAACACACTACGTTCTGCTAATCCATTGGTCTTTCTCTC
CCTGTGTCTCCAATGTTTCTATGGTGGGGCCGCTGCAGGGTAGATAGATGGCTAGGGGTGGCCCAAGTTT
GTGCATTTTCAATTTTAATAGGATGGGATTCATGTCTTCCCCAGATAGGTACCCACGGCGCCAAGAAGCG
GGTATCGTGCGCAGCGTACAACAGGTGCGAGCCGGCGTGCACTGCAGCTGGCGACAGCCTCCGGGCTCGC
CGACTCCCTCCGCGCTCGCCAGCTCCTTCCCAGCAAGCACCGCGCACATTTGCATATCAGTTACGTCCTT
GCCTTTACTTGCATATAAAAAATCGAAAGGACAAATCACAAAAGTCTCCCTGTGAAGATTGCCCTACGGC
TCAGCATGTCTTGCAGTTCCCCACTTCAACCTGAGGAAGAGGAATTAGGAAATTGCTTGCACTTTGTTTT
CACCTTTATCGAAAGAGGGTTTCGCCAGCACTGCCACCCTGTTTATGGGCCCGGCAAGGCAAAAAGGGCT
TCTGTCGTGAGTGGCACACGTAGGGCAGCTCCATTGCTCTTCGTGCGGAATCGACATCAAGAGATTTCGG
AAGCATAATTTTTTGGTACCTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCCTGTCAGAAGTTAACTAA
TGTAAGAACTTTTGCGTTGTTCTGATGCTTACGCCTAAGAAGTTATAGGGAGTAACTGAAATCTCCAACG
TGTAAAAAGCTCGACAACGTGCTGGTTAGATTAGCTAAGTCAACTATTTACGAGAAGCATCAAAGGACTG
TGGTTACACACTGTGGTTTTTCACAGTAAAGCGGGTGATGGCTGACGTAGGAAAAGCGGCTGTTTTTCCA
TTTCACAGGTTAGGGAATGGAGGTTTGAGCAAAGTAAAGTTACATGTTTATTCAAGGGCACTCTGGAGTC
CAGAGGGACTATCCAGACTAAGTGTCTGCTTGCAGGGGTGATTGAATCAGCAAACATAACTGATTTTATA
AAAATTCTTCCCCTCAACCAGGCGTATACATCCCTTTCTAAAGCTGTGTTAAAAAAATAAATAAATAAAA
ATAAAATGAAGCTGTGTTAATGTTCTTTCGATAGCTTTTGGCCTTTAAAAACAGAAGCAATANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAAGCAATAGTTT
AAAGTATCAGTTTAGCACTTTCTTACTGCTGGCTACCAACAACCTTTCTGGATAACTATTCAACAAAGAG
GTAAGAATCTAAAACCTTCAAAAAAAAAAAAAAAAATCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>cfa.U11.2.chr30
CCACACTTAGAAGAGTCTCACCTGCTCTGGGATTATCTGGATTTTTGTCTGGGTGGCAGGAGAGGGCCTT
CTGTCTATATGCCTTCTTCACCTGGAAGAGTCAGAAGATGTGGTTATTCACTCTCTCACCCCAGGACAGA
CAGGAAAATCTCACTGAAGCAATAAAGGGAATCCAAGTGTACTCCCCCTCACTAAAAGAAAGGCTGTTGT
TTCCCATACTGAAACAGTCACCTCACAAACTCTGAGGAGATTTGCAGTGGAGGAGGCAAAAGCCAGAGAG
GGAGCTAACTGCTGTCCTGCAGCAGAGGAGCTGGGTCTCCTTCCTGCTGAGCACCAGTGTCAACAGAAAG
GATGTAAAAGGGCTCTGGGCAGGGTCAGATTTCTTTACAGCCACCTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTCTAAAAGTTTGTGGTTTTTTTGGTGTGTGTTTGTGGTTTTTTTTTTTTTAAGG
GATCTCCCACCCAGCATGGAACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGATTTTATTTTT
AAGTAATCTCTCCACTGAATGTGGTGCTCAAACCTATAACCACAAGATCAAGAATCACATGCTCCAGCCT
TGTACTGAGCCAGCCATGGTTACCCCTGCAGCAATGTTTATATCAGCTCCCATGGGAACCACTCAAAATC
TCCATCAACAGGGACACCCATTAAAAAATACTATGATATAAAAAAAAAAAATACTATGATAAATTTTAAA
AAGGAATTTAAAAAAATTTTAAAAAGGGCTTCTGTCGTGAGTGGCACATGTAGGGCAGCTCCATTGCTCT
TTGTGCAGAATCAACATCAAAAATACTATGATAAACAGAGGTCTATACGTGTTGACTAGAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTAAAAGATCTTCAAGGTACATGAAGCATGAAAAAAACAAGACTTAGATC
ACTATATATAATATGATCACTTCAGGATTTAAAATAAATACAAATACTATAAATAGAAATACTTGGACAT
GTGCATAGCCTTTGTTTTCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTT
TTTCTTTTTTAAGATTTTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAATTTTTTTCTTATCATAAGGAACCT
AAGAGTGATTTCCTTTGGAGAGAGGCTTAGGATGGATGGGAGGGAAACACTTCTCTCTACACCCAAGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTT
ACTTATTATATACTTTTCTGTAGTTCAAATTTTCAAACCTTAAACAGATCTTATTTTATTATCATTTTTT
ATTGCCAACAGGGGTTATCTTGGTGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAGAATAAAAAAACATAGCCACCAAAATTCTCTATCATATATTGCCCA
CTCAGCTGTTTTAAGGACAAGGGAGAGCAC
>cfa.U11.3.chrX
TTATATATTTTGGATGCTAACCCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGTACTTCTATCTTTGA
AACAGTCAAGAAGTATAAAGGACTTCTCTTGTGAGTGGCATGTGTAGGACAGTTCCATATCTCTTCTTGC
AGAATTGACATCAAGAGATTTTAGAAGCATGATTTTTGTACCTGGGCAGCTGGTGATTGTTGGTCTCAGT
GCCTCCCCCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAGATGA
AAATATGGGGAGGGGGAAAAAGAAAAAAAGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
TATCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAACAGAAAAAAAGTCAAGTAGCCAACTTC
CATTAATCAATTAATTGATTAACTAATTAAAGTGTTTAGTTTTTTATTACTCTTCTGCTAGGGACTGTGC
TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGG
AGGTATCTAGGAACAGAATCTAACTACGGAAACAGTGCCAGGTTTGTTTCTTAAAGGGAATATTTGATCT
GATTCCTGAAAAATGCATAGAATTTGATTATCCAGTTGAAATAAGAGAGAGGTGAGTAGGGAGAGTAATA
TGTGTAAAAGCACAAAATCAGGATAGAATATAAAGAGTTTAGCAAGTGGCATGGCATTCAAGATGACCAG
AGAGTAGAGTATGGAATGGAGAGATTAGGT
>cfa.U11.4.chr37
CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAATGCCACGATGGTGGAGCC
TTTAATAATCCAAGATGGCAAAAATCAGGACAATGGTGAGCCTGCACCTCTAAACAGCAGTACAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGCTAACACAAAGTAAT
TTGGAGTTAAGTTGTTCCAAAAACCATTTCATGTTCAAAGCTCTTATTTTCTAAAAGCATTTTCTAAAAT
TTAAAGACATGACCTGAAACAACTTTTCTTTGGCAGTAATCATGTAAAAATACCAAAAGAGCTTAAGAAT
AGTCACTCTTCACTATATTTGATAGCTATTCTGGAAACTAAATACATAATTCTTTGTTCCATTTGATTGA
ATTTTGGATTAAACTGCAGCTTTCCCATCACCTTGAAAAGCATGTTGGTTCAGAACCTACATAATATTCA
AATGCTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTGGTTTTTAAAAGCAGAAGTGGCCTGGTGTGTCACTTTAATCTGGACATCCCTCCTTGTGGATTC
ATCCAATAGATAAGTGCTATAGCTCCAGACTACCAGGAAAATGATTATTATTAACAGTAGCCAAAATAGG
ACAGTTTGCAATCAGCAGGATCTTGCAATAAGCCTAGGCACCTTGCCGAGAGAGCTTGATACACATTATC
TTATTTCTCATGACACTGGTACTTTTTTCGTCTTTGTTTTTCGTTTTTTGAAAGATGAGGAAATTGTGGT
TTAAAAAGATTACAAAATTCAAAAAAGGTTTCTGTCATGAGTGGCACACATAGGGCAGCTCTGCTGCTCT
TCATATGGGATCGATACCAAAAAGATTACATAATTCACTCAAGCTACTAAATGTATTTGAATTCACCAGT
CTGTCTCATTGCAGAACCGGTGTTCTTAACCGCTGATAACCCCAGAATTTCTCAAAGTGTGCTGTGGGTG
ATGATCTTGATGGTGAACAGTCGAAAGTTGTTTTTTTTTCACAGTTAATATATATTAGAAAGAAATACAA
CTGACACCTTCCCAAACTTTACTGCTTAAAGTCTGGGTAGATAACTTGATTTCCTTTCTTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACCAGATGGTTTAAAGAAAATTTTAA
TAGTATAGGTAATAATCCCATACTGGAAAAATCAAGAAGGTACTGAGTCAATAATTAAAGCCTGGAAAAC
ACTGGACTACATTTTTCAACCCAAGCAGGAGAAATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTATT
TAAACTTTGGATTTTAAACCTCTGAAATACGTAATACGAATGTATTGGTTAACTATTGTGATCCTACTTT
TATTTTACCATTCAAAGGCAAAGAAATATGAAAAAACCCTAGTACATGAGCCATTATATATTTTAAGATT
GAGTCAAATACAGTTGCTCTGACATTCCTCTTTGAAGATATAATCAACTTGTAGACACTGAAAGGGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGAGCCAGA
ATATGAAATAGCTACAACAGTAACCCCATTCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGATCCACCGTGGACCAGCACTC
TGAGTGGCACTGGTGTACAGAACAGTATATACTTCTAATTTTCATAATGTGCATTTTCCTAGCTCTGTGC
ATCTTCCTAGCTCTCTTATTTCCAATGAGAAATGGCAAAGTAAATCTTTCGAGGTCTTTTTCTTTTGAAT
ATCCAGAGAGCAAAGCACAAGACCAAAGGC
>cfa.U11.5.chr17
GTGTCTTAACTCATTGCACTGGTATTTGTGTATTTGAGTGAAGGGACTCCTCTTCTACAGGTTTGCTTTA
GAAGAGACATTTCTTCACCCGATGCTCAGTTTGGCTTTCTGGTATGTCCACTTGTAATGTCTTGGGCAGG
TGGGTCCTGCTATTGTGGTCTATTTTTGAGAGGATCTGTTCAAACTCTAAGGACAGAGATTGGGGGTTAA
AACACTGCCTGAGAACAGTTGGATAAGACTGCTGGCTTTGTTTCCTACCCAAGTGAAGCTATAGGATGTT
TGTCTGGATTTTCTGGTCAGGCTTACTAGACAGTCAGGACTGAGTACTATATTCAGTACTAGACAAAGCT
ATGAATTAACTTCCCTGTCTTGGCAGGACAGCAGGACAGAACCCAGGACCCAGACATCTGGTGTGGGAAC
CAGAATCAGGCCAGAGTGTGCATTGAATTCCCTGGTTAAAGTCACCTGTTTTGCTCTGCAGATGGGGAAG
CCATGCTCTGTGCTCTGTTCAACTGCTACTGTATATAGGGCTTTTGAATGGTCTGTGTTGCTTCCAGTGG
ACTTTGTTTGGTTAAGTTCCCTGGTCAGATAAACTGAAGGCTGTATTCAGGAATGAATGGGACTATGAAT
TAGATTTCCTGCCCAGACATAGTGAAAGATGCAGCTCTAAAGACAATAAAATTATTTGTTGTCTTAACTC
AAGCCAACCCACCCCACCAAGTTCCATGACCAAATAAGAACATTGGCTTTGTTTGGCAAACTTTTGGCTT
TGCCTTGCTGTCTCTTGGCTTGAGTACTAACTGACCTCTGTAGTTTCTAGGTATTGTCTCCAGCCCTTCT
GGTCAGATGGGGGCTGGAAGATATTTTCCACAGAATGTGGGGCTATATCTCAGCTCCCTTGCCTGGGTGG
AAGGGAAAGGTCCACCTCAGGTTATTTCCAATTTACCAAACAGGCTTTTTGGTTGGAAGGGGCTGGAAGC
CACCCTCAGGATTGTCTGTGTATTAATTCCTCTGCTGTGTGTAGCACAGGAACATCCATACTTGATACTA
GCTTTGTTCTGGGGGCAATCAGCTTTCTGCTGTACTTCCAGGAATTGTCTTTAGTCCTTTTCTGGTCAGA
TGAGTCTGGAAGACATTCTCCACAGTGGGTGGTGATGTGATTCAACTCCTCACCTGGGCGTAGACAAACC
AGGCTCTATGCCAGAGAACTCCTGTGTCTGAATCAGGTAGATCTGCACCCACTGAGTTTCCTGGTCAGAG
AGGGTTCCTGATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGTTTTTTGTTTTTTTTTTGTGAGGGGAGCAATATCAAAA
ACAACTTGTCACTATCTTTGTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTCAGTAATGTTTTATAGTGTACTTTTTCCTGTACACTTAGGTCATCTCCCATATATCCTATACATTT
TTATTTATTTGTGTGAAAAAAAAGGAGGTATGCCCTCCTTTCAGTAGCCCTGATATTCATCACTATATGC
ATAATACTGGATCCTATGCTATTGATAGTAAAAGACATGTTGATTCATTGCTTCTGTCTACAAAGAACTC
ATGACTAAATTGGGAAGGAAATCTTGCTAAAAATGTTCACAATAGCACCCAATAATATTGTGATTGCTCC
AAGGAAAAATTGTGGAATACAGTTGTATATAATAATATAAGGATCAAATTTTATCCATATTACATTTAGT
ATAAAATAAAGATTGGTGAAAGATTTGAAT
>cfa.U11.6.chr37
AATTTTATTTTTACCTGCTTTTCAAAGGAGGTTCTAGGCTATTTTAGACTCTATGAAAAGCAATATTCTT
CTCCAGAGAGAACATGGATAATATCTTGTGGTCTGAGAAAACATTCTGGTATCTATGAAAGCATGAAAGT
TTGGGGTACAGTATAGTATTCTGAAAAGATCTTTGGTGTATTTTGGAGACCTTGCTTCCTATACTAATTT
TACTTCCGGATAGCTTTGTGGTTTGATTAGATGCCTTGTGGTTTGATTAGATTTTTGGTCCTCAGTTTCC
TCATCTCTAAAATAACAGGAATATTCTGTAAGTAAATTCCTATCTAGTTCTTAAATTTGATGGGTTCTTT
GATCAGCAAGCACAATTATTAGTCATCTAGTTTTAATCTTGGTAAGCTACAGGGGCATATACAATTACCT
TGAACTCAGAGATGGATGCATTTTGTTCAAGTAAAAGTGGGTCACTTAATAATGGAGTTGGAGACAGTGT
TTATCTTCCTCCCATGGGTTTGATGCTATGGTTAAGCAGGGTAGAAATACTACCTGCTACTTCNGAGAGC
AGAGATCTGTCTTCTGTTTCTCCCATCTCTCGGGGAACCCAGAAGACATGAGAGACACTCAATAATAAAC
ATTTTTAAATGAGTGAATAAAAACCTTTTTTTCTGGGCACAACTCCATGGAATCTTTCTGACTTTCAGAA
ACAAACCTTGGATTTGCACTATGATAATAAATATGCGTAGAGTTGGATTTGTGGTATGACGTTCACAGAC
CATTTCTACCCAACCCTCAACACACTCTTGATAATCATGATATACTTGCTTTGATTATTAGTTTGTGAAC
TATGGATTCTTGATTTTAATTTATGAATCTGTATGATAAAATTAGCATAGACAAAATTATTGAATGTGAA
TTTTAAAAACTATTCCTTCTTAACTGAAAGCTTAAGGCAATCAAATTTCAAGTGTGAATATTCAGATTTT
TGGAGTGTGGAATTAGTCAGCTATTATTGGTTACTTGGTTTACCCATTGTCAGCTGCCAGAAAGTTCTTA
CTGTCTGCCAGTGTTCTAGGCCTTTTTCATGGATGCATAATTTTTAAGAAGGAGTCATTTTGTGGAGAAT
TCATGATAATGTGAAATTTTCTATTGGATACAATGCAAAGGTTTTAACTCAATCTGGTTTTTGGCTTCCT
TTTAATTAATCAGCATTATTTAGAATTTCTGGAATAGATATTTGTGACCAGTGATCTACAACAATAATAT
ACTGGATTGAGAAATAAGAGATCTGGTAAAAGCTAAATAAATAAGTTTAAATACATTTGATTTTATTTAA
ATGAATTTGGTGATTGTTTATGGCCAGGAGTGAGACTTTTGAGGTTCTCAGAGTTAAGAAACTTTAAGTT
GAAAAAATAAGTACACTGTGAAATCAAAGTTCAGCTAGTAAATGATTTATTTAATCAATCCATTTGTATA
CATCATCCATCCTTAACATTTCTGACGGTTGTACATTATAACTACGTGGCTGAATATAATGCCTAATAAT
TTGCCGATTGCTTTGTTGGTCCTGACATATCTCTCCATTTATAATGAAGAGTCTCTTGTGAATAAGCATT
GTAACCTTCACAAGCTCTTGAGAAGGCCAAGTTGAAGTAAAAAACAAAGCCCTATAAAACCACCTCACTA
TAAATTGGTTTTAATCTGAATGCTGTTTTCCTTGGAATATATGAAATGTTTTGTTTTGGACCTCATGTAG
CGTTCTTCTTACACTCTGAAATGAAGGATTTTATTGGGCTGTATTATTTGTTCAAGTGTTTTTATAGCTA
AATAGTAAGGACACGAAGGGGTTAGAGAGATTAATAATGCAAGGAATGCACATTGCCAACAGAATAACAT
CAATTTCTTTTAATATTGCAAAGTTCATTAATAAAAGACTAGATCATAATTTTAAAAGCTGTGGTGATGT
CCATCATACAAGGACAATGTGAGGGTTAGTTGGGTTTTCTACACAGTTCTTCCACACAGTTCTCAATGCC
ACTCTTAACTGTATCAAGCACTTATCCTTCTCAAGGATAAATTGATTTTCCACGTAGAAGGGTCTCTAAC
TTTCCTTGGATAAGAAAATACAGAGGTGGAATTATAGGCTTTTTGTAGATGGAAAATTTGAAAAAAATAA
TCCTTTCCTTTCAAAAATGTACTTTCAACA
>cfa.U11.7.chr22
TGTGTGGTTGTGTTGAGACCCTGTGCCTGCGTTCTCAGCAACAGGAATATGGAGAGGGGGGAGTGATGTG
CCACAGTTAAGAGCAGGTGGGAGTCTTTACGTGCTATGTATTCTCACCCTGGGGCTAGAAGCAGAGAATC
AAGGGAGTTACAGTAGGGAAGTAGTTCAGATCTCCAAGGTGGAGGAGAGGACCAGGGAGAGATGGATAGC
TTCATCAATTGGTGAGAAGATTGAGAAACTTTTGTTGTGGCAAATAAAGCTATTTCAGGATGCATTAGTT
ATACAGGCCAATCAAGGATTACCCTTACTCATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAAGTTGACACCTGGTTTAATTTGTTT
TCTCACCTTTGCTTTGTCATATTTCTTCCCACCTTGTAATGCTCGCTAGGGAATAAATAATAATTGCTTA
GCAATTCTTGCAAAGCCAAGGCAATAGATTAGTGTGAATCAACATGGATTGACTTTATTTTTACATACCA
CCTAATCAGAAAGAAAAGATTTTCTTAATAACATTTCTCATATTGCAGTTCTCCATCCATTTGTGCAGAT
GAGGGAGATTTGGATAAATAGAGAATGGAAGCAGTGAGGTGAGGAATTGCAGATATATGTGGTATCTGTT
AACAGCCATGGCATTCTCAAATTTCTACTCTACCTCTAAGGAACAATTTTATTTACATTAAAATTAAGCT
ATATTGGTGGCATTTACCAGAGGGAGCTCATTTTTTAACTTAAAGAAGTTTTTCTTTTATTTTTAGACAA
ATATTGTCTTTGAAATGTGGGCTAAATAAATATATTTTTTAATCACAAAGAAAATGTTTTGTTCTTTATT
TAAAACTGATCTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAATCTTAAAAAAAGTAAAACTAATCTTAGA
CTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>cfa.U11.8.chr8
AGACAGCTTAATCCCTCTCCCATCCTGAAAGCTACGTCTTGGCCAGCACCCCCAGGCCCTGAAATCTCCA
AGCAACTGTAACCATGGCCACAACCTTGCATATCAGGTGTTCTATCCATTACATTCAGGTGATGTGCTTT
CCACTTCATTCCCAGAACATCTCCTAGGCAAGTTGGAGACTATCTGGCCCAAGATGATGCCCTTCGTTAT
GATGCTGTAACTTGTTGCTGGGCCCCAGGTGCCCTGAAGGATTATAGGAGCGAATAGAATTTGGCGATGT
CATCAGAGAGGTTGGCTGAGTTCTTGGGGTGCGGGTGCCCAGCTTGTCAGTAGCAGCTTGGTTTCCATCA
GCTGATGAATCAAGTTTGCAGAGTGTCCACCATGTCCTTTGGACATCTGAACTGGGCACACTGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGAAGAGCCCATACAACCCAGTTCCCATGGGGAGCTCCCTCCCCCCCATCCCAG
CCTTTGGTGAGATGCTTGCTCTTTGCAAAGACCCAATTTCTTCACCATTAGAATGCTGCCACCAGGCTTC
AGGGGATGACCCACTTACAGCCAATTGCTTCCTTCTGGGTCGTTCTGATGGATTAAATGAAGAACCATTT
AAAAGCACAGCCCAAAGAGCCAGAGGGAGAGGCTGCAGAGGGGCGATGCAGATGGAGTGCCACGTACACG
TGAGGCAGCCCTGCACCATAGTCAGGAAGAGCTCCGGGTGCACCAGGGTGGCCCCACCACCAATCAGATG
GCCCGACCTACCTTGCAGTTGTGCTCACCTAACTAGGCCAATCACAAAGTGAGCCCTCCGTAAGATGTGG
CAATTACAGGACCTGGGGGCTATGTGTGCCACATGCTGCTCATCTACCCTGACCTCTCCAACCTTTCCCA
TTTCACTGCAGGTTTGCAATATCCAGGGCTTCTGCTGTGCTTAGAATCCTTTTTTTATTTCTGAGTGCAC
TTGTGACAGACGAGGCATTTGCAGGGAGAGTCTCTGAGTTTTATTTCCAGCACACCCCTGGGTTCCTGTT
GGACGTGGCTGGGCTGTTTTTAACCAGGTAACAATCTGACCAAAGGACTTCTCAGTCCAACAAATGCTTG
TGATGGCTTTTCAGTGTTTCAGGCACCAGCTTCCACGCTACAACACAGAGATGAATAAGAAATGGTATCT
TACCCTCGGTCAGTAAATTATCATAGACCGAAGTCATATCAGGTGCCAGAGGTTTTAAGAATATTATTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTATTATTCT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTACCCTGAGCTACCTTTCTGCTAGGGAGCCAGGGTTGAGTAGAGAC
AAAGATGTAAAGCTTTACATACTATCCAGACAACGAAAACCCCTACGCTAAGTTAAGGCCAAGGAAGCCA
GATGCCATCACTGAAGTCTGACCAAGAAGGTGCAAGCCATTCACGCTGACCAAAGAGGAGGCAGGATGGA
GTCCCTGCCCCAGGCTGCATGCTGTGTGCTCCTGATTTGCCAACTCCCTGGCAGATGCAAGAGACTATCG
TGGCTAGAGGGATCAGTACCCATGCCTCCCTTTCTCTCCATTTTTATGGGGAGGGACAAAGAAGTGCTGG
GCTAAACAGATTTAACACTTGGCCCTCCTCCAACAAAACTCTGCTAAGAAAGATAAAAAGCTGCTCTCCA
TCCCACACTCCTTGTCTTGGAGCAGGGAAGAAATCAAAGCCCTTCTGACAACAATAGAGACCAAAATTTG
CAAGGGCAAGACAGATCCTCTGCTAATAAA
>csa.U11.1.paired_scaffold_106
TTTACAAGTCTTACTATTTTAGATTTTCTGTATCCAGCTGGCGAAGTAACCATGGCACCAAACATAGAAA
CAAAATATTACTATAAAAAACTTTTAGTCCCCGGAAATTGAAATAATACATTAACATTTTTGATAATTTT
TAATATAGTAGAACTTACCTTCGCTTGTTTCTTGTGTTATATCGTCTTTAAAAGCGACATTTTCCGATGT
TTCAGATCGCGCGTCCAAACAATGATCAAGTTCTATGATTTCTTGAATATCTGTCGCTACGTCTTTATCC
ACCAAACCGGAATCATACAAAAGTTGCAGTCTTTTCAATCTTGCCAATCCTTGAACTTGAAGACATTCTT
TATCTGATTGTGCATCTGACCTTACAATAGATGTTTCACGCTGTCTTCTGATAACGTGAGGCTCGTAATA
TGCTGACACGGAGCGTTTTTCATTTGAAAGACTGTGTTTCTTAGAGGTATTCCATTGTATGGGGGCGGTG
AATGGCCTTGAAGCCAATGGTTTCTTTTCTCGTTTCAGATTTTCGACGTATTTTACATTATGTTGCAAGT
TTTCACGCACTTTGGGTGTAGCCAATCTTCTAATCGTTTCCTCATTGATTGAAGATTTTCGTCTTCTTAA
TTTTCCTATTTGTAACGTTCCAAAGAATTCTGCCATAATAAATTATCTATTAGTAGGCATCATATGAAAA
TCGATGAACACCCAATAGTAACTATAAAACATATACCGCGCAAACACGTTTGATAATTATTGCTGAAGAG
CACTTATAAAGCTTTTATGTCCTGAGTATAGTCTAATGGTACAGAGGCGCAAAACATCAAACTTACAAAA
ATCATAAAATTAGACTACTTTACTAAAGTACTTAAAGTACGACTATTAAGTGAACTTGACTAATTTAAAA
AATCCAGGAAATTTTCATAATTGGGTTAACTTACCACAAACTCTAAATTATTTTTTTAATTCAAATACAA
ACATCCATTTTTGTAAACTAAAAGGGCTTCCGTCGTGACTGGCGCATGTATTGGGCTTTAACTAGTTCGG
TATGTGTGGAATCGCAATCAATAGATTCCGGAAGCACAATTTTTACAACATAGTGGATGTTGGTTGCCGC
TTGCACCGACGCCCGTACACTTTTTAATATGCATCTACATTATCACCGTTGATAAAACGATAGTAAGGGT
TTGGATTTAGAACCGCGAAAACAAAGCCACAGTTACTATGAAGATATATGAAGATCGAACTACTGAAGAT
TTTATTTTAAAAGTGCAATTATACTCCAAATCAACTGATTGATACTAAAAGTAGTAGGAACAAATAACTA
TACATTATAGGTATATAACAATTTATGTGTTACTCCGGGCAATGATTATCTTTTTATAATCATTGCTCCG
GGCGAGTGTGGAATTTAGGCCAGCCACTTGCGTTCAACACAGCGGATTCTACTACAGGTTGTGCACAAAT
TGTAAGCATATGATTCGCAGTTAACATTGAATTGGTGACACGAATTATATGAAGCCAACCGTGATAATTC
CTTAAACATACGTATTCCCAACAAGTTATTCTACGATAAACTGTATAACCTAAATTCGATATAGGTTAAC
CTCTGAAAACACCTATTGGAACTGTTGGAAACTTATCGGATTGCAAGGTTAATTTTGTCGGTTTGTTACA
GAAGCAGAACCTGGATCTCTTGTTGCGTTTCAAGTCTGTGATGGGAGTTAAAATCTTTTGGGTGTTTGTG
TCACCAACAAGTTATTCATTCCACAATCGTTAGCTTACCTAATGGATCGTCAGAAATTACAATGCCGAAT
TTTAACCATTTAAAACGAGATAACGAAATTTGGTCTTTTAAAATAAAAAATCTCTAAAACAATGTTGTCG
AAACGTCTAAAGTTTGGTTTCTTTGGAAAGCTATATGATATATATTTTAAAAAGTGCCAAAATAAACATA
CCTTTGCATTAGAAAATATTAAGTTCTTAAATTTTAGGACATTTTGGTTTAATTTTCAGGTGAACCTCCC
ACAACATGTGTTTTTCCTTATGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAGGGACATTGTCTATC
GTATTAATGGGTTCTTCCAAATTGAAGGAA
>dan.U11.1.2448814
ACATTTATTCTTTTTTTTAAATGGGGATTTAAAAAATAATTGAGATTGATTGATATATACACCTTTGTAG
AGTCATATTATTGTCAATCGCAGTCTACGCGCGATTCCTTGATAGCTTAGAGGCTTGCATGTTGGTCTAT
TAAACAAAAGCACGGAGGTTCGAATCCCAGTCCAGGCGAAAGTAAGTAAAAATAATACAATGTAGTTTAT
GATATTTGTAAAATGTTTCTTAACATTTAAACTCGTTTACGATTTGCGAAAACAAATTAATACATAAAAA
CATTGGTGTGGTGGGTTTCTAAAAATAGACAATGATTTTTTTTCAAAATGTCTTTCCAGGGATTTTTTTG
CAAAAAATGACCAAGGAGTTCTTTGATGAGTTCTTTGCAAAGAATACCAAATACCTTCCCTAGGATTTCT
TTGCAGGTATTCCTGGGGAAATTCCCTAACCAGTTAGGGAGAAAATTCCCCAGGTCACCGATGCATAGGA
CATCCCATACAAAAATTCCTTAACGAATTTCATATACCAGCACTGGGGAATTCCTAATGCATGGTGAGCA
GGTAATGGAGAGTTCCACAAGGAACTCCTCAACACTGGAACTGCAGGGAAAGTTACCAATCAAATACACA
CACATGTATAAGTAAATGCAAGCTTCACAGGAGGCTGGACATAATTGGTAGCTGCACTTACAGGACTATA
TCTTGAGTTAACGAATTTTGCCAGATATGAGCGATATATCAAAAGTTGCGTCATCTCAAAAGCTATCTCC
ACGTGCAATATAAAAAGAATCAAATGAGCCAATTTTGAAAAATAATTTTTTTTCTTAAACATTTTCTTTA
TTTTCAGTGTATTTTTATACCCTTGCAGAGGGTATATAGTCCGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTACGCAAACTAGTCTCTCAG
TTTTATACGATCTGCTATATATCAAATTATATAAGATGCGTGCTCGGGTGGTAAAAAAGGGTGCTCGTCT
TCGCGCGTTCGATCGCTGAACAAAAGTGCAGACGCATTGCGCCGCAGGACCATCTCATTTTTTGGTGTGC
GTCTAATTGCCGCCTTCGATGGTTCCTTGCGTGCCCAGTGGGGTATGGCTTTGCATATCCAGTGCATAAT
TTTTGTAATGGGGCTGGCGGCTGCACCTCGAACCGTTCGCACTGGATAGCCTTGTGGTGGACCCTTAGGG
TTCGACACGAGTGCGTGCCAGTGGTTTTGTGCGCTGAGCCCCGCCTAAATAATAAATTTGATTCCTTCTC
GCCTCTTACGTAGGAAGGTCCTTTATCCTTATTCCGTGGCGCCACCTAGCGGACTGCGACTCAACTGCAA
GGGTATATAAACTTCGACTCCGCCCGAAGTTAGCTTTTCTTTCTTGTTTTAATTTACAAAGTTTTTGGAA
GTGTGAAGGTTAGTTTAAAAATTTTTATTAAAAATTTGTCAAAAATTTCACAATTTTTTTGTAGTTAGCC
CAAAAATCCAAAATTGTAATTCAAAAATACTCTATCTGGGAACTAAAAGGTCTCCTTCAGCCCTAATTTA
GTGATTCAAATTTTTTTTTACTTTCACATTAATATCTCCCAAACCAAACGGCTTTTGGAAAATGCTTGAA
CCAAATTATCTAATTAAAACAATATCTTTCGATTGGTATATAATTCAATCAGATCGGATGCATACAGAAA
ATTTTTAACTCTTTGGCTAAATATAGAGACTTCTCGCGCACGCCAAGAATATCGAAAAAATATATCTCGA
ATAGCAATATTTCATCGATTGCCTTCGACAGTGATAAAGCAATTTTATTTGTTTGATTTCATTGAGAAAT
TGAGAAATTGAGAAATTGAGAAAAAAAAACAAGAAAGGACGACTATTGTCAAATTTCCCGATACCCCATA
CTTATTTTTGCCACCCAAACATTAAATTACCTTTCAATGTATAAACCAAAAAATGTTTTTTGCATATTTT
TGTATGTTTTGGAATAAACCACCCAAATTATACAGTGGGGACAGTACCACTCTAAGCTGCGAAGTGTAAA
GACGTGTGACTAACTACCAGTAGGCAAAAAGAAAAAACCAATCCTCATCAGTAAAAAAAACCAACAACTA
AGCCAGTAATATATAAAAACAAAAAACACA
>dan.U11.2.2448841
GCAGTTGCAATCAAGACACCTGATGGGGAAGTTCCAAAATCTAATTGTATTCATTGAGTTTATTTAGCAC
TGTCCATCGGGGGACTCGGTTAGGATGTGCTTATAGCCATTGCTTCCCAGATACATGTGCTCCCGCTGGA
AATGGTAAGGTATCTGAAAAGTTTGTGTTAAGTTTGTTGTAAGGATGCAAAAGGATCTAAGACTTACTGC
CCCTGGAGCTGGGCACGGAATGGCCACTGTAGCGATTTCCCGGAGCTTGTTCATGGTTCTCAAACTCTGA
TAAAAACTGTGCATCACATACCACTTGCAGTAATCCATACAAATTAAGCTATAGCAGACGATAACTGGGG
AAAAGATAATTAAATTAAATAAATGTTGAAATAGGAACCGCAATAACTTACAGTAGGGCACTTGTCCGCC
CAACAACTGGACAATTTTCATGTCTCTTAGCATGAAAACCAAAACTCCCAGGGCCACCATCAGAAGGAAC
TCAACCACCAGCCATGGAATTATTAGGCCAGGACGATTTTTGTAAACTCCAAAGAACAGGGCTATGCAAC
TGAGGGCATAAGTCCCGGAGACACCAGCCAGGAAATAGAGAACATTTTCAGTGGCATCTGCCAGTTGGGC
GGCAGTTTGGAGGACCAAGTCGTTGTGGAACGGGGACATGTTGTAGAAGCCATTGTCCTTCTGGTCCAGA
ATGTCCAGTTCCAGAACATGGCACATCTGCTCGGCATGAGCCAGGCCCAAAAGCACCAGGAACAGAGCAC
AAAGGGAGATCAACTAGAGAAAGAGAAGATATTTCAATTATTTTTAATGTTCTAAAATAAATAAAAACTT
AAAAGCATGTCAACTTTATTAAAAAATGTGTTTGCGAAAACCAGAACATCAATATGTACATGCTACTTAT
ATATGTATGATCTGCAAAAGCTGCCACATCTTAGGGGTTGTAGAATTCCCAACCGGTTTTAGCTTTGCTT
GCCACGACTTTGTCCACAAACTTGGCAAATGTGTTAAAAGGGTGCTCGTCTTGGCGCGTTCGATCGCTGA
ACAAAAGTGCAGACGCATTGCGCCGCAGGACCATCTCATTTTCTGGTGTGCGTCTAATTGCCGCCTTCGA
TGGTTCCTTGCGTGCCCAGTGGGGTATGGCTTTGCATATCCAGTGCATAATTTTTGTAATGGGGCTGGCG
GCTGCACCTCGAACCATTCGCACTGGATAGCCTGTGGTGGGCCCTTAGGGTTCGGCATGAGTGCGTGCCA
GTGGGTTTTGTGCGCTGAGCCCCGCCTAAATAATAAATTTTGATTCCTTCTCGCCTCTTACGTAAGAATG
TCCTTTATCCTTGTTCCGTCTCATAACCAAAATTACTTACCAACTGATAGATGCTGGTCAACAGCGCTGT
GGTGCGTAGATTCCTTGGCGAAATTGGGGACATCAAGGACTCCCAGATCCGGCGGCAGCAGCACTTCCAC
TTGCACCCGATCCCGGATGCCGAGCCGACCGTGGGCAGCAGCATTTTCACGGATTTTCTTCTGGCTTTTC
CTCCTCAAATCAATTTATGGATTTTTCCCGTTGTGCAGCTTAGAGTACGAAATGCGACGCAACTGTTCCG
CGGACTCGGTTGTCATGCAATTGACTTGAAAACATTAAAAGTGGGTGTGCGGCGGTGACCTCGAAAAGGG
GTGGGTGTGGTGTGTCGGGTTAACTTGTGGCACCCACGCGACCCAAACTTTCCTGGAAAGCTTTCACCGA
GGGTTTGATCCAAACTGCACTGCAGAACTAACCAAAAGATTACCAGCAACTACGGAAATTGAGTGCCAAG
GTCTGACCAAATGTTTTGACTTTTGGCCCAAAAGCTTTTTGGCTTGGATTGTTGTTTACTTATTTTTGGG
AGAAAAGGTCTATTAACTTAGTCAGGGTGCTTGATAATCTCAAAAATATTTCAAGGGAAATATTTACTAT
AATATTTTTGAAGTGAGGACTAAACCTTACTATAAATGTCTTCTATGCTACGTTTATTTTTTAAATAAAT
CCATGTAAATTATTTTAATCCTAGAGGACTCATAGAGTATTCCTGAATCGTTGATGTTACAGTATAAAAG
CCATTTATTTGGGGTTGTTTTCCACTTTAGACCGCGCAGATGTTTATCGAGCTTTTCTTTTGGCGAAAGC
TTTTCAAGGAGTTGCCACTTATTTCCAAAT
>dre.U11.1.chrUn
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTTGTCAAACTGT
AGTGATTTATTGATCCACTGTCACTCTATGTGGGCTTCTGATGTTGCAGAATATCACAGCTATCAGTCAA
TCAGATCCGAGAACCAAACAGAACAGTTATATATATTTAGATATATATTCTCATTACTGTTCAAATTCTC
ATTACTGTCAAGCACTTAACCTACTACTTCTGTAAAGATTCTGAAGTGTGTAATGTACATACAAGAGACA
CTACTGCCCATGGGGCCATAGAACCTCTGTGGATAGCATCTGTAAAGTGGAGCAACTGAAAAACATTCAG
ACTCCTTTCTTTAAATTGTCTTTTTAAAATAATAAGTTGTGGTACTCATACAGTAGATGCACAATGTTAT
AGGTTGACTTTGTTTGAAGCAATTATCTGTTGCAGACCAAAAAAAATCATTAAATTTTATAATTTAATTA
GCTAATTGATATAACAGACAATATTTTACATTTTTTATCAACTAGTGTTTATAATTATGCGTGTAGTGGG
AAATACATTCGTTTTTTTGTCATTCTAACGTTGTTTCTAGTTTGCTAACCAATCAGACGACACGATTGAA
GCATCCGCGTATTATCATTGCACGAAATGCCTGTCACTCATTAACGTTACCGCCTCCTTCCCATGATGCT
TCATCGTAAGATATCTTTATACCTTTTTTACATGTGTGTTTTGGCCGGATTTAGCATATTATCATAAAAT
ATATACATTTTAGATTTTCAAAATTAATTATACATTGAAGAATTAATGAAGAGCAAGAATTTATTGTTGT
TTTTATTTACCCCAGCAATGCTCGAGGTTACCCTCTCTGTGACGCTCAAGTCTCTGAATATGGTCTTCAA
CCTGTGCTTTCATTAAGTTTAAAAAGGGCATCTGCTGTGAGTAGCATAGCTGTGGAAGGGGATCTCTGAC
ACAGTTACGGAATCGCTATCAAGAGATTTCGGATGCATAATTTTTAAGAAACGGGGCTGCTAATGATCGT
AGGTCTTGGCGCCCCAAATCAACAACGTTAAAAAGAAAACATAAAGAGATAGAGTTGAATGAAATAAGCC
CATCTAGCTTCTTTCAGTTCAGAGATTGGACGAGCTGTCTTTCATCAAACTGATAATATTCTCAAACATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGACCTCAACTGTATGT
TCTCCAGTTAAATTATAATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATAATTAGGTTGACTAGGTTAGCAATGGTTTATCTGTATAAACATTGATTTGTTCTTT
TTTTTTGTTGTTTTTTTTTGGTTTGGTCAATGGTTTATGTTGAAAATAAAATATTGCTCAAGGAGCTAAT
AATATTGACTGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAGCTAACTCTAACAGATTATATAAAATTTCATCTTTA
GGAATTTATTACCTACGCTTACTGCGTAGC
>dre.U11.2.chr19
TTTAACTGCTAGCATTAATCGGTCACAAACGCACCCTTTCGGTTAACGGTTAATCAATTATTTTGAGCAT
CCCTAATACATACATACATACATATATATATAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGCAAGGCTAAGGCAAGAAGTACTACTTCGTCTTTAAAAAAGGGGA
GGAGACCGACAGAAACTCAGAGTCAAGAGAATAAAACTTGCTCTTGACCAGGTTAGGTTCACAGAGCAAG
TTACCATGGTAACTGACTCTGGGTCAAACTTACCTCTCATTCAGAAACAGGCTTGACTTAACTTGCTTTC
TCGAGTTCGATAAACCTGCCATTTTGAAACGGAAAACCCAGAGTTTTCACTTAACCTTGTTTCTGAATTT
GGCCCCATGTTGTCCAACAGCAGCAATATTTTTCAAACAGTAGAGTGTCCTCTGCTTGCCACTGTATGTG
GGTGGAGTAATACACAAGAGTGAAGAGGCCCGGTGAGTGCTGTTATTTGCAGAATATCACACGGCCATCA
GCCAATTAGATTCAAGAAACAGACAGAACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGC
AAACTTTTATGTGCTCCTGCAATTGGTCTGACACTGGCCTGATCAACCTGCTACAGTACTACTGTTTTGG
ATAATCTGTTGTCCATTGTTGTCATTGATATACCATTGTTGAGGTAACTTGACACATTCAGTGGGCCTTA
GTTGTACAGTGTGAAAGGTTAAAAAGAGCATCTGCTGTGAATAGCGTAGCTGCGGAAGGGATTCTTTGAC
ACAGTTGCGGAATCGCTATCAAGAGACAAGATGCACAATTTTTATAATCTGAGGCTACCAATGATCTGTT
ATCTTGGTGCCTCAATATATTACTGTTACTAAAGACATAGAATTTATATAAAATAAATGTCAATAACTGA
AATGATCTGTTTGTGAAGCTTCAAAGGTATAATCACATTATACAGTTTATATGACTCATATTTTTTAAAA
AATCTTCTATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTTGATGTTTAACAAACATTTACATTCTTTTTTTTCTTATTATTACTATTATTAAGCATTATTATTAAAT
TGTTTTAAAAGCGTGGGATAAATAATGTTTTTTTTTTACTGATGATTAATGTATTAAAGGAATAAATATT
GTAAATAGGTAATTGTAATATTTCTAAAAAAAATGTTCATCATTACACAATGTATTCTAATTTGTAATAG
ACATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTGCTTAATATTTGTTATGAAAAAACAGTATACAGTACATTATTACAATC
AAGCAACTTGTTACAAGTATTTGTATTAAAAAAAATAATCAAAGAATCCTCAAAAAAATGTAACAGTATG
CAGAACGGTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCAACCTTGGTGAGGTGAATATAATAGAATAAATCACAAACCTAATATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAGATAAAATATGTAACAATATTTCACACTAGTGTATACAGTATATTAGTAATACACAACATTACGTTT
TGAGGTAGAATAAATGTATAATTGGTAAGC
>dre.U11.3.chr1
TGTTCAGTTTATTCAGATCAGTGTAATTCAAATGTTATTGTTGAACAACATTTTTATATTGTTGTTGACA
ATAGTTGTAGTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNACTGAAATTTATTTGTTTGTGAAAACACAAATATAATCCTCAATTTCACCATTTCGCTCCGATAT
AGTTTAATATGCAGTGATGTGACAAAGACAGCACATTGCATATTAAAAATGTAAAAACAGAAAGTCTCTC
GAGACTTGAGTATTGAACATAGTGGATGGATAAATGATTGTGTCACAAATCAACAATCTGATCTCCGTGC
TGTGCCCTGTCTGTGTTTGCTTCTGTCAGCCTGCATTCTGATAGAATATTGTTCTGTTTCACATGTAAAT
CTCCGTCTTGTATGCACATCTTTTCTCAGGGTTCTCCCCAGGGGAAGTGCTGATTATAAATTTTCAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTACCCATTGCGCCACCGCTCTGCCCCCTGGATATAATTCAAGACAATTGTGACTTCAGGA
CTTTTCTTACTTATGTATTGAAACTTTAAGAGCAAAACATTTATCCAAATGATAAGGGTAATTTGCCTAT
AAATTGCAGTTATATTAAACAAAGTAGGCTCACCTTCATGATGGCATTATTACATCCTATAGCTAGAAAA
GTAGCAGATAACATAACTCTTTAAGGATTATTGTTGTGATTGTGCTTTTTCAAATTAAGAACACCTGTAA
TCACAATAAATATTTAATCTGCTATGGGCTTCTGCTGTGCTTAGCAAAGATACAAACTAGAACACAGTCT
AAAAGCCATTTGTCATCATGACACCTTTTTCCCCATATCATGACACCCTATCGAACTGGTCCTTTGAGAA
GAAAATGAAGGGCTTATGTCCTTTGAGAACTGATCGGATTATTGGAAGATGGGCGTTGCTAACTAAATGA
AGGAAGATTGACCAATGGGTGAAGGCATACGACACACGCCCTGATAGCCTGAATTTATACAAAAGGAAGA
AGTGCTCAAAAACACCATTTACAACAAGCATTCATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACAAGCACTACTATCTAAATTTAAAAACC
AGAGGAGCAAATTTAAATTTCATGGTGACTTCTTGTTAAACTGTACACTTAGCTCACTGTATTGTCTCTG
TAGACCTGAAAAAAAAGATTATTCTGCTTACATTTTAATTTTTTNTTCAGAACAAGTAATGTTTTCTACG
TTTTCATATATATCCAAAAAACAATGGGTCACATTCATTAACCATGCATATACACAAGATTGTGTAAATT
GTGTGTATAGATGTTTTCATGAAAAAAAATAATGATTCATCAAAACTTACATAAAATATTCTAGAACAAC
TTATACTACACACAATTCTCATGTTGGCCCAAGGCCATATAAAGAACCCAACATATAATTAGATATGATA
GAAAGTAACTAGACATTAAAATGGATATATAGACCTATATATGATTAGAGGTGCAAACAACAATCTCCTG
CTCTATCAAAAGATGAGTATTGTTTCACCTTGTGTTTGGCCAACTGTGACTGCTTCCCAGAACAGTGGAC
TGATATGCTTCCTGAGAGTGATGAATGGCG
>dre.U11.4.chr25
TCCTCTGCCACAAGAACAATGAGTGAGGCTTTAAGAAGCAGAACAAAAGAAAATTTTTGTTTTTGTCGCT
TGATTGATATGTTTAAGAGAACTGTGCTTGCCATTGTGTTTTTGTTTGTTATTATGAAGGAAAACATAAA
AAGCTTAAAAAGATGCAAAAGCAATAATTGCAGTGATACTGAGAGACAATTTTATAACATGAAGCCCATA
TGGTTCCATTATTTGGACAAACATTGACCAATCTAATAAATTATTCAAAGTTAAATTATTCAGTTTAAGT
AAAAAAAATGAGCTTAGACAGCCGCTGATGATATTTAAATACTTATTATTATTTAAATTTTTTTAATTTA
TTTAATATTTGCATTTTAAGCTATTATTTTGGATGATAAATTAAGTGCATGACTAATTTTTGTTTCTGAA
AGAAAGAATAAACATACTCTAGGTGTAGTATAAAATTGCTCAACGCCAACCTCAATTTTCAGTTGCTGAA
TATGAACAATATCTACAGCGGAAGCACAGAATGTAAAACAGTGGTTAGATCAGCAAAGCGTTACCATTTA
AACCCTTTCACAAGTATTAAATACTCCTGCTGACCCACCAGTGTGAGTTTTAGAGTGTGACCATTAATAA
AAGGCAGAGCTTTAAAGTTTACATAGTGACACATTAGTTTTATTACATGACACACCACAGCCTAAAGGTC
TCATTTATATACTAAATGGGCAGAAATTGAACCTCTCTAAATCATCATGAGCCATTTTTTATTAATAAAT
ATAGTAAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TCAGACCCCTGGTGATTTAAGCATATATTGTTTTTTGTTATTTTTTCCATTTTTGTTTGCAAATATTGAC
ATGTTTTATTTATTATATTGTGAAATATTTGATATTTTGATTGTCAGATATGTGTAACAACATAAGGATG
GAGGCTGACATATTTACAACATGCTAATTCCTCATCTTCTTCAGACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAAAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>dme.U11.1.chr3L
AATCAAGACACCTGATGGGAAGTTCCAAAAATATCCAATCTTTCAGTACATGTTTAACACTGTCCATCGG
GAGACTCGGTTAGAATGTGCTTATATCCATTGCTGCCCAGATACATGTGCTCGCGTTGGAAACGATAGGG
TATCTAATGTATAAGAAAGTTACTATTAAAGTTTTCAAAATATTGATACCAACTTACGGCTCCTGGAGCT
GGACATGGTATGGCCACAGTGGCAATCTCTCGAAGCTTATTCATGGTGCGTAGACTCTGGTAGAAGCTAT
GCATCACATACCACTTGCAGTAATCCATGCAGATCAAGATGTAGCAAATGATAACTGAAATATAAGATAA
TTCGTTATTATTTACTTCAAAATTTAAGCCTAAAAATCCAAACTTACAGTAGGGCACTTGACCACCCAGC
AATTGCACGATTTTTGTATCCCTCAGCATGAAGACCAGTGCCCCCAAACCAATCATTAATAGGAACTCCA
CAACCAGCCAGGGTATGATTAGGCCCGGCCGATTTTTGAAGACTCCGAAAAACAGGAATATGGCACTCAG
GGCGTAGGTACCCGCGATACCAGCCATCACGTAGAGCAGATTCTCCGTGGCGACGGCCAATTGGGCAGCG
GTTTGCAGGCGAAGATCGTTGTGAAAGGGCGACATGTTGTAGAAACCATTGTCCTTCTGGTCCAAGATGT
CCAGCTCCAGCACCTCGCACATCTGTTCGGCATGCGCCAGTCCCAGGAGAACCAGGAAAAGGGCGCAGTG
GGAGATTAACTGGGGAATATAGAAAAGCGACTGTTTAGGATCTCACTTAACAAAAAGTGTTTGCGAAAAC
CGGAACAACCCAGCGATCTGCTGAAGCTACCACCCTTATTTTTCACCAAACTGAACGAAGCCAGAAAGCT
GCTTCTACAATTCCCAACTGGTTCTAGGAGCTTTCGCAACAACTCCCAATATATTTCAGGAGAAGAGCTT
TAAAAAGGGTGCTCGTCCTGGCACGTTTCCGATCACGAAACTCAAGTGCGGACGCATTGCGCCGCAGGAG
CGTCTCCTTCGCTCCGCCCCTGGACTTCTCCGGGGATAGGCGGGGGCGAGCGTTCCATTGCCGCCTTCGA
CGCCTCCTTGCGCGCCCAGTGGGGTATGGCTTTGCATATCCAGTGCGTAATTTTTGTATTTGGGGCCGCG
GCTGCACATTGTGGATTGCTCGGGGATTCCCGGATCTCCCTGCGTGCCAGTGCGCTGCGCCCCGCCTGAG
ATATCCATTCTCCAGTCTCTTATATAATCCGCTACTATATATACATGTATGTTTGAACTTACCAACTGGT
AGATGCTCGTCAAGAGCGCCGTGGTCCTGAGGTTCTTGGGCGATACGGGCGCCATCAGCATTTCCCAGCT
GCGGCGACAGCAGTTTTTCCATTTGCATCCTGCGGCGGATTGGCCGCTGACCGTTGGCAGCAGCATTTCA
CTTTAGTTTTCCGAGTTTTACTTAATCAATTTATGGATTTTTCCCGCTTATTCAGCTAATCAAGGAGCGA
CGCAACTGTTCCGCGGCTGTTTCGTCATGCAATTGAACTTGGAGACCTCGCGAAAAGGTGGAGGGGCAAC
ACCCACGCGACCCAAACTTTTCCGGAGCTTTTTCCTGTGGTTTGGGGCGTAAACTGCACTAGCGAATTAA
TCAAAAAAACTATATGGATAAAACAACGTTGAGTGCCAAGGTCCGCAAAATGTTTTGACTCGGCGAAAAG
CTTTTACGACTGTGTTTTGTTTCATACTCTGCCGTTGAGTTTTTTGGCTATCTAAAGCGTGTGGTTTATA
CAATATATGTACATGTAAGGATAATTCAAAAATCAAAGTATTCTTAGACTAACCAAATATTTTTTTTAAA
TTTATGGCTTAATAGCTTTATATTCAGTAATGACTTTCAATTGGTGACCCCGACCAAACGTTGATTAAAA
TAGCCAAGCTAGCTTGTGAATCTCCTTTTTTAAAGTTGTATATCGTTTTCTTAGTAAAATATTACAATCA
TTAATTATGATTTAGAGTATCTAAACGTTCTCCAATAAATAAAGCCTTGGCGAACAATTTTGGGGGTTGT
TTTCCTCTTGAAACCGCGCAGATGTTTATCGTCCCATTCACAGAGCTTTCTTTTGACTTTTCGAAGCTTC
CGCCAGAGTTGCCACCGTCTTGCGGGGCGC
>dmo.U11.1.contig_1277
CAATATATGCTTATAGCCATTGCTGCCCAAATACATATGCTCTCTGCGGAACTGATAGGGTACCTAAAAG
GTAAGTTGATTAGCTTTTTTTTATGGGGAATACATTTGTAGTGTAAACTCACAGCGCCTGGGGCTGGACA
GGGTATAGCCACAGTTGCGATCTCTCGCAGTTTGTTCATTGTGCGTAGACTCTGATAGAAGCTATGCATG
ATGTACCACTTAAGACCATCCATCAAGAGCATAGTATAGCAGATGATTACTAGAATGGGAACGAATATTA
GCTCAGAAATCGGAAAGTTAAAGTTTATCTAATTTACTTACAATAGGCGCACTGTCCGCCAAATAGCATG
GGCAACTTCGTATCCTTCAGCATGAATATAATGACAGCCACTGCAATGGCGCCCAGAAATTCAATTACCA
GCCAGGGTATTATCAGGCCGGGCTTATTCTTGAACACGCCAAAGAATAGGGCTATGGCACTCAAAGCATA
AACGCTGGCAATGCCGGATAGTACATAGAGTGCATTTTCGGTAGCATCCGCCAGTTGAGCAGCCGTCTTC
AAGCGCATATCGTTGTGAATGCTGTAGAATCCGCTATCCTTCTGATCCAATATATCCATGTCGAGCAGAT
TACGCATTTGCTCCGCATGCGCCAGACAGAGAAGCACAACAAATAATATCGAGTGCGCAATGAGCTGGAA
AGAGAAGTAGAGGAGGAGAGTAAGTAAATTAACGATATGCAAGTGCTATAAATAGACCGACTGAGCAAGC
ACTAGAGTAGAACAGAGACGGAACGAGGCTGGAGTGTCAAATGATAACGGCATTTAAATGCTTTCAAAAG
GATTGCAGTCGTAGTCAACTCTGTTGATCTTTGCAGTGTTGCCAAATTTCTATTTACTGCGAATCGAATG
TGTCAGCAAAGCGAATGCGCCAAAAATTCTCAACCGGTTTTAGCATTAAGCGTAGCTATATGCAGCTCAT
TTTCGGAGTTGGGTTATTAAAAAGGGTGCTCGTCTTTGGCGCTTTCCGTATTTTACGAGAAACAGTGCGG
ACGCATTGTGCCGTTTGCCCATTCCTACGCTCTTCGTGGGCGGGGGCGCGCGTCGAATTGCCGTCTTCGA
TGGGTGCAAACGCGCATAGTGGGGTATGGCTTTGCATATCCAGTGCGTAATTTTTGTGTTAGGGGCATAG
GTAGCTGTACGTTTGGGACGGCCGGATAGCGGAGTTCTCTGCGTGCCGGCAGTCCGTACGCTGTGCCCCA
CATTATTAAATGCATTATATAAGAGTGAAAGAGAGAGAGGGAGAGGAGACAAAGGAGTAGAGTGTTGGCG
TTTATCTCTAAGCTTACCAGCTGGTAGATGCTCGTCAGCAGCGCTGTGGTGCGCAGATTGCGCGGGGAGA
CGGGCGACATCAGCATGTCCCAGGTCTGGCGCCAACTCCACTTGACACCCGTTCGCATCGTGGGCAGCAG
CATGATTTTCCAGAGTATTTCCTTGAGTTAATTTCTATTGTTTACACCGTGGCACAATCAATTTATGGAT
TTTTTCCCTTAGCGACTCTTAACTTTAGCTGCTGCTGCTGCTTGCGACTCGCGACTGTGTTTCGTCATCC
AAATGGAAGAAGCTTCAGAAGGGTTGGGGTAGTTTGGGGCGCGTTATTAACACATGCACGCTAGATATTT
CGTGCCCTAAACTTGATAAAAGCTCTTGCGGTGCCGCACAAGAAAATGGCACCAAGGTCTGTTATGATTC
TTGAAAAGCTTTTAACAGTTGTTTGTTTTCCCGACACAGCTGTAGGCTCTAACAGGGAGGGGCACCTAGA
GCTACTTGATTTTTTAGACAACTGTAACTACTTTAGTTAAGCATTGTACTATATAAATTCTATATTTAAT
AGAAATATTTTTGTTTGTTTTTTTCAAAAAATCTAACAAAAAGCCTTCTTTGACTACCCTAGAAAGCATT
ACAGCACTTCAAGGGCTGTTTTTTTGGTGTGCTTGAAAACACGCAGATGTTTATCACGTGAGCTTTTTGG
ATGGAAGCTTTTTTGTCGCTGGCAGCGTTGCCAGATGTGCGTGCGGCGGCCTATGAGAAAATAAAGCAAT
TAAAAAGCGTTTGGTGCACCGCAACGGCCCGTTTGCTATGATAAATTTTACATTTTAAAAGTCAATTTAC
ACTGAACTATAAAAATGTAACATAAATTTT
>lcl|Contig62_Contig4544:78777-80976
CTGGCTCTCTCGGCGGTTCCTCCCCCGGCCACCAGCTGCATTGATCCTTTTGGGCCTAAACAGAGGCCTG
CTCGTTTTAATGAAAGAAAGAAATGCGAACCGAACCCGCCGCCTGATCTGCTCTCGATCTGAATTCCCTT
CCATGGCATGGCACTTGCCTTTCATCCTTTCATCCAATCCATTCCACAGCCACATTTGCTGCCACCTTTG
CTGCCCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCTCATTCTCCTTCTCCTTG
GACTCTCATCTCTTGATCTCTTGACATTTATATTGATTTAAACTGGTTTCATTTTGGGATTAGAATGTTT
GATGTATTGTTCGGGGCTCGTGATTAATATACTACTTTCCACATTGATATTTCCATTCATTTCGATGGGA
GGAAGCGAAAACATTTTTTCATTTATGGGGAGAACCAAGCAAAAGTTATTTAAAATCTTGGAAATTGTTA
ATGAATGTCTAGATTCTTGGAAATAACTATCCAACTATTAGCTAAACATATCTTTCAGATGTTATGGAAG
GAATATCTTAGATTTGAAATGCTGAAATACCCTTTGATTCTCTATATAGATACAAATAGAATCCTAGAAG
AGGAAACTTCAGAGAATTGTGGCACGGATTGTGGTATGTCCATGGAATGTGCAACATTTTCTTTTTAATC
TGAAGCGCACTCTATTTTTGTTCCTTGAGTGGATGGATGTCGTAAAGTCCATGTGGACGGATTATTTGCT
TTCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTGTAATATAAACCCTACCAATC
TCTCCCTTTCTCACTCTCTCCTGCGTTTTGCGAAGAGGATTTTGATGGAGCCGTTTGCCGTTGCCGTTGC
TGTTGCCTGGTTACGATTGCTGGCAGCTTAATCAGGCTATTTATGCCACGCCCACACTTGTGGAGAGGGG
GTCCCGAGGCCCATATACACCACCCACTCGCACACACATACGCCTCCTACATGCCCCTCCTGGAGGCCGG
CAGGCCGCTGCCTGTGGAAGACAAAAAAAAGACAACGGCTCACAGGGGCTAATGAAATTTACTGGCCCAC
GGATAGAAGAGTAGAATAGAGTAGAGTAGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGCCTAATGAATGTGCCACTGCCAGTTGCAAGGCAATAAAAAATCAGCCAAACGAATTGT
CGTTAATCAGCCAGCAGCACGGCACCTACAAAAAAACACACACAAAAAAATACAACAAAAAAGAAAAAAA
AAAAAGAAAAAAAGAACCACGCAGCACGAAGCACATAAAATGAAATGAAATCCAAGCAAAGTTTCCTTCT
CCTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGC
CCAGCAGCACAGCAGTGGATGCCACAAGCTGTCCCTGCCACTGCCACTGGCACTGCCACATCTCCCCGCC
CACACATAGACACCCCCCGCAACCCTGCCCCCTCCCCCGCACATCCACATCCACACGATCCACACACAAA
GCAATCAAAACTGTCGCCTATGAAAAATGTTCGGGGCAAATGGCGGCGAACTTTTCGAAAAAAATACTGC
AAAAAAAAACACAACAAAAATACCACAAATCTATATATGTATGTAGGTACGTGTGCTATATATTTGTTCG
TGTGCGAGTGCAATCTTTGTTTGAGAATTTTCATTTTCCAATCATTTGTTTTGGGAGCATGTTTTTGGTA
TACCCTGTACCGAGGGCATGCAGATTATATAGGCCATCTCTGGATGATGTTTGGCTGCAGAGGAACCTGT
TAAATAAATCAGATATGTACTATGTATATTGCAACTGAGAGATAGATGAAGAAGGGCCTTCTTTATGGCA
GAAATTACCCATAGAAACAGATTACTATAATATATCGTAGAGCCCGGAGCACTTCATAGAAGAGTATCTA
CATGTGCACTTCTTTATCGTTCTGTTGTCACTTTTAAAGCTATACTCTGGCTTAAAAGTACACTGAAAAA
TGTATATGATATGAATCGATATCAGGACTG
>dps.U11.1.Contig5946_Contig6670
AATTTATAATACAACTTCCCAGACACCTGATAGGGAAGTTTGAGAACTTGTTTAACGCTCGTTTAGTTGG
ATCCATTAGCCAGGAGTTTCGATTGATACGTGGATCTAACACTGTCCATCTGGTGATTCGGTGAGTATAT
GCTTATAGCCATTGCTGCCCAAATACATGTGCTCGCGACGGAAGTGATAGGGAATCTGTCAAGCAAAACA
ATGTGCATTATTTCCAGCTGCAATATTAGGTGAATGTGCGGACTTACGGCTCCTGGAGCTGGACAGGGAA
TGGCCACTGTGGCAATCTCCCTCAGCTTGTTCATGGTGCGCAAACTCTGATAGAAGCTGTGCATCGAATA
CCACTTGATGCAGTCCATGCTGAGCAAAGTATAGCAGATGATAACTACATAAGAGATATCAAAGGATCGG
TGTCAGTGTCAGTGTTATTCATCGATGAGGCCTACAATAACTCACAGTAGGGCACATTTCCGCAAAAGAT
CATTGTAAGCTTCGTATCCCTCAGCATGAAGATTAGCACACCGATGCCCACGATGCACAGGAACTCTGCG
ACCAGCCAAGGTATGATCAAGCCCGGTCGGCTCTTGTAGACTCCAAAGAACAGGGAGATGGCGCACAGGG
CATAGGCTGAAGAGACACCAACCATCACGTACAGGAAATTCTCCATGGCATCGGACAGCTGGGCCGCCGA
CCGGAGTCTCAGATCGTTGTGAAAGGGTGCCATAGTGTAGAACCCACTATCCTTCTGATCCAGTATGTCC
AATTCAAGCAACCGATGGATCTGCTCCGCATGGGCCAGGCAGAGCAGCATGAAGAACAAAATACAATGGG
CAACCAGCTAAGTAAGAGAGAGAGAGAGAGACAGGGAGAGGGTGAAATATTAGAAAAGCTTAAAAAGCAG
CGATCTCTTTGTGCTTTATGTGCGCTTTAGAATTCCCAACTAGTTTTAGCCGCGCCTTCTTCGACCTCCC
GCTAAACTGCCTCTTGCTTCAAAAAGGGTATCCGAGTCAGGTGTTCGCAACGAAAGCGCGCCGAGTCGCA
CTGCGCCTTTGGGACCATCTAGCATCCTTCGGGGAGCGGGGGTCGAGTTTCCAATCTGCTCACCCTTCGA
TGGATCCCTATGTGCCCAGTGGGGTATGGCTTTGCATATCCGAGGCTCAATTTTTGAATGTGGGGCTTGA
CAGCTGCACCTCGTATGGTCCGAATGGTACGGACCTGTGCGCTGCGCCCCGCCTGATTAATACATTTGTT
ATATAAAGGAGTGATATATCAGCTCCTTATTTTGTCCCATATCCATATCCTAGTTAGCACTCACTTCCCG
CTTCCTTCACTCACCAATTGAAATATGCTGGTGAGCATGGCCGTTGTCCTTAGATTCTTTGGTGTTAGTG
GTGCCATCAGGAAGTCCCAGAAGCGACGGCAACAGCATTGCAATTTTCCAGTGGAGAGCAGCATTTTCCT
GGATTTTCCTTAACGTTTCTCAATCAATTTATGGATTTTTCTTTTGCACAAAATGCGTCGCAACTGCTCC
GCGGATGTTTCGTCATGCAATTGAGGTCTGGATTGTGTCTCGCGTTCGCGGAAGGGAAGGTTAAATTGGG
CCAGTAAGCACCCACGCAACCAAAAGCTTTCCTCCAAGTGCCGTGCTTGTGGGGTCAAATTGCACTAGAA
AAAACACGACCGACGCTGGGTGCCAAGGTTCTCTAACGGTGGTTTCGGGTTCATGCACTTTTCTGGGAAG
TTTGAGCTTTTGCGCGTGGACTCTACCCATATCGAAGCCATAAGGGTGCACAAGCTTCGGCGTGGATTCT
ATTCTATGTTCCAACCTTGTTGTTGAGCATTTTTTGGGGTTGATTTTTATCGCGCGATTTGAAGAGCTTT
TGTCGTCGCCAAAGCTTCCGCCAGAGTTGCCACACCGCGGCACTAAGAAAGCAATTAAACTTTGCCGCTT
CTCCCTCCCCCTTTTGCGACCAGACCATCCAGCCAGCCAGCCAGCCACTGTCCGTTGCTATGATAAATTT
TTGCATTTTAAAAGTCAATTTACACTGAACTATAAAAATGTAACATAAATTTTGCCAAAGCAGCTCATAA
AACTCCCGTCATGGAGCTGGGGCAGAGTCTTCGGCAAGAGTCGGCAAGCGAAGGGAATCAAAGTCGTGTC
GTTGCCACTGGGCAACCATCCTCATCCTCA
>dps.U11.2.Contig6654_Contig5965
CTTAAAGTATGCTCCACTTCCACTCCCATTCGACTCACCTTTAAGCCTTCGGCAAATGCCTGCCGCTGTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGGGTGGCACTGGGACACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACGTCATATGAGTCCTTGTCCGTAATC
TCCTCCTTAATTATCGCCTTTCCATCGAGCGCCATCTGGAAATAGTCCAGCAAATTAGTTAAGAAATACA
TATATGTATAAGCAGCAGGGCGGAAGAGAGGCAGGGACTGGGAGGACGAAGACGAGGACGAGGACCCGCC
CACGACCACGGCCCGCGACAGACAGACTGCACGGGTTCCCACCAGCGACGGCGATAGACAAAAACATCAA
GTGACAAAGTTCTCACATTATGTTTTCAACTTATTTGATTTCAATTTGATTAAATGGTTGTCTGACATGC
AAATTGGGTGTGCCCGCACACAGCTACAGAGTCCTTGGACTCCTGGCCAAATGGGGAACCTCAAGCAGCT
GTCGCACTAATGTGCCTAAACGGGTTCTCTTAAACAAAAACAAAAAAAAAACACATTTAAAATTAATGCA
AAACACAGTGCAACTTCTTCCATATAGAGGGTCTTAAAATATAGAAGCCAGTACATATGTACATATATTC
CTAGGAATTATTCAAGAATACTCGGGGTATTCTTTCTTTGATTATTTTTCAACAACTGGGAATTTCGGAA
ATTTAAATTCTTCGAATATTTTCAAATTTTCCCGACCGACCGACCATCCATCCAGCCAACAACTGGGCAC
AGGCCACACGCTGTGGACACCTGTTCCGTAATTGAGTTGGAGAACTTTTGCCCCGCAGACTCTGCAGCGC
CTTCGACTCAATGAATTTCCACGAGGAATTCTCGGCTATTTTTGCCGGAGGGCAACTCGATTGCTCTATT
GGGTGGTGGCCTTGCTAATTGACTCAACAAATGCAGTTCCTGTTTATTGGCAGTGGCAAGCAACCCTTCG
CCTGTGCAACCCACCAATTAGGACCCCTGCCCCCTCCCGCCTGGCCGTATCCACGCCACCCCGTATCCCC
CGCCGCCCGGACACAGCATGTTCATGTCCAGAGCGAAACATTTTTCTGTTGATTTTTATCACTAAAATAT
GTAAATACCTCTGCGGACTGTGGGAGTTTGTGCAGCTTTGCGAGGCAAGCCCCTGCATAAACAAGAGGGT
GGTAAGGTGGGAGGTAAAAACAACAAGAAACTGAACAGAAGGCTGTGTGTATGAAGGTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGCTCGGAAACCTGTTC
ATTTTCATTCATGTTTTCGATCAATCTTTGCGGCCTTTTATTTCGCTTGAGGTGTAAGAATCGGTGGAAG
CATCATCGTGTGTTTAAAGTCCATCGTCGCCGCACTGGCTAACATGTACGTATCCGAACAATTAGTGCCC
CCCACAGACCCCTCCTGCACTCCCTGCAGCCCCCCTAACAGCTGGAGCAGCTGTTTGGCATCAGAGCAGA
AATTACACACACACAGCAAATGCTGGCTGCTAATGAAATGAAATTCTATTGAAAACAAACACTTGACACG
GCGGCAGCTGCCGTTTTGCCAAATGACGACGAGAGATGGCCCACAGATCGGTCCCCCGTCCCCCGTCCCA
CGTGCCCCGTCCCCCATGCCCCGTGCCCCGTGCCCATCCTCTTCAGCATATGGTAGACATAACACTTGTC
AACTGTTTTTCCGAGCTCTTTCCGAATGAAGTTTGCAAAAATACCAACAAAAGACAATGCGTACGAGTGT
GTGTGCACACATACAGGGCGGCTGATTAGATGAGGGGCAAACAACAAGTGTTTTCAGGTGAGAGGGGAGG
TGCCACAGGCAGAGGCCAAGGAACCCAGCGTTGCCGCTGAGTCACTTAATAGCCCCAACGTTGCCTGCCA
ACAGCTGCTGCCTCTGCCAGTGCCTCCTGTTCTGCCAACGCCTCTGTTCTGTTCTGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
>dps.U11.3.Contig6009_Contig6090
ATTTGACCATTGTCTGCCACCGGCTTCTTCTCCCCCACTGTCGACCTGGAGCATTGCTCATCCAAGAACT
CATAATCCTCGAAATTGAGGCCTGCTCTCTCCATTGCAGATTTTAGCCGTAGCTGAAGTTCGGCTTTTAA
GCCGCTTGTCGGTAAACCCCGCTCAGCTAATTCCTTCATCAATTGTTCTGCTTTTAGCTCTCCTTATTTA
ACCACTCTCAAAATTGACACTTCTGACACTAGTAGTTACAGTATACAGTTCGTATTTTCAAGGTTGTGAA
TATGAAAACAGAGGGTATTCTAACTATGCAGAGATTTTTTAGCCAAGACTGACTATTTTCAATATAACAT
GACAACAATAGCCAGTCTACTAAATCTCCATTCGTTACAATATAAATAAATTAAAACATATGTTAAGTAG
GTATTTAGCCAGCGCGCATTGTGGTTGCACGGTTGTTTCTTGCATACATTTTCTGACCGATTTTTTTTTA
CAGTTTAATGCTGCTCCCACGAATTTTTCCGTTTTATTTATACTTTTTCCACGTTCACTGGTATAGAACG
AATAACACTATATTTTTGATATAATGACTAAACCTTGCACTCGGAAACGGTGTTTCGTGCCTCGTGTTCC
GCACGTGACGACAGTTGCCGTTAGCTAGTATTGTGAATAATAATAATACATTTCGAACGATAAGCTGAAA
AAACACGTCTGGTTGATACGGTAGCTGATATTCAACTAGTTTATTTATTTGTTTAGTTAGCATACGTACA
CTGCCGATCAATAGAATAGACTCAATGAATTTTTTATAGGAAATTAATTCATTTTAAAAATCAAGATACG
AATGAATTTGGGAAAAATATATTTTTTAAATATTCAAGATTCTATTCTTTAAAAAAAAACATTGTTGTTA
TAATTCAAAAGGAATACACTCAAGGGCTTAAAATTAATATAAATGAAAAAGGTTTTCAGAATCTTAATGT
TAAATTATATTTTTATAATAAAGTCTGATATGATATGATAAAGTCTGTTTAATAATGGGTGTAGCCAGCC
TTATTAGAAATGACTTCGAAAATTCGTTTTGGCCTTGAATTATTCAGGGACTCCAAATAGTCCAGGGATA
TTTCGCTCCATGCGTTTTTGATGGCATGTTTCAATGATGCAACATCTTCAAATTGTTTTTCGGATTCATA
CACTTTACGCGAAAGCCATCCCGGTTCGGTACCATTCGGTTTTCCATGTCATATGATCCCGAGCAAAAAG
AGAGCGACCTTTTTTACGAACGTCAGTAAGTGGTGCTTTTTTTTGTATTTGTAAAGTATTTTAGCTTTTT
TCCCCGTTGTTAGAGCTTTACCACGATCCGTTCTATGTTAAAATAATTGAAAAGTGCAAGAGGTATTTAA
ATGCAACTTTTACCGTGTACAGCTTACAGCCTTTGAGTCTATTCTAATGATCGCCTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>dps.U11.4.Contig1828_Contig8101
CATATTTTTTTGATCGAATATATGTACCTCTAAGATACCCAATAAAAATTATAAATACATTTTTTCAAAT
CTGTAGAGGTATCTGAAGATTTCACCTTTTTAAAATGACTATGAAATTATAGGAGAATTAGATATTGTTA
TTTCAAGTAGAAGCCAGAAGTACAATCAAAGAAGTTCCAGCAAGGGATGTTCCACTGTAATTAGTCCTCC
GATAAAAACAGAAAATCTTCGACTGAGACTCGGAATGCTCTGCTCTCCTGCTCACTCTAGCGGGAGTCTT
GGGATCAAAAGCAAACACTCGGAGTGGCGGAGGAGGCTTAGGAGTTGTCTCCCTCCCTCTCCCTTGTCCG
TGCTCAGGCTGTGACTGCATTGATTTCCACTTTGCCAGGCGGTAGAGCGGCAGATCGGCTGGCTCCACTA
CCGTTGCCGTTATTTATGAATACGAATTAATGTACCGTTAGCATGCACAACAACACTTTGCACCGATTCC
GGGGACCCGGGGGAGGCAGGGGAGGTAGGGAGCCCCGTAGACCCCTCTAGTTCTTGATTCAGGGCCAGGG
ACAGGGCCAGGGCCAGGGCTAGGTCCCCCGAGCAACACTTCACTTTGTTTGGCTAAATGCGGAGCTGTCG
TCCATTTCGGGTGCCATTATTACGACCGTTTCCGCTCAGAGATTTCCGGTGATTATTTCCATGCTGGCCT
GGCCCGAAAGCAAACAGCAGTACGAGCAACGAGCAGCGGCCTGGGCCTGGGCCTAGGTGCTGGGTGCTGG
GTCCCGGGGCGGACCATTTGGTGACGCTTTGCCGCGGCGACACTGTGGACGGGTCGCTTGATTGAATTAA
GCCCCAAATGATCCTGGCCAGAGCTATGCATAATGACACGCAGCTTAATTACGCCCTGCACTGCGTGTGA
CTGTGTGGCTGTGGTTGGTTCTGCCACTGTAGATGGCTGTGCCTGTGGCAGGGGCACCTGGCCCACTTAC
CCTAATTGAAATTGATTGTGATGGAGGTTCTGGGCATACAAACAGCCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGTATGACAGATTGTAACTTGTTTGGAGAATCAAAATTCAACATGA
CAGCCAACGAAACCAATCTATGAAAACGAATTTGAAGGCAGTTCTTGGTCTCGCTCTCGTTCCCGTTCCC
ATTCCCATTCTCATGCAGTTGTTCTTGATGATACTCCCTCCGCGTATCGATTAAAGTTGCGACACAGTGC
CAAAATGTACGTGTATTTTGAGGCAGGGGGCTGGCGGGGCTGAGGCCTGAAACCCTCCTCAAATTTTATC
GTTTTTTGAAATATTAAACTCATGTCAAACAATGCGCCAAAGGCGGCTCAATACACGTGTGTGTGCTGAT
AGGATAAGGGGCGTGGCACAAGCGGGAAGGGAGAGGTAGAGGTAACGACCCAAGAACGAACAAACAATGA
AAGAGAGGCAGAGACAGAGACAGAGACAGAGACACTCAAAAACAGAAGCTAATGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
GGATAGCGAACAGGGAATACACTTTGAACGTTTATTCGATGAAATTTAAGGGTTTTTAATTGGAACAATC
CAAACCCTTCTTCGGAAGAGAATAGTTCTTAGGGAGAGCACGGTCTGAGAACGGATCATTGGTGAGAGTT
CGTGAATTGCTCTTTGGGAAAGGCTTTTGTTTGGATTTTCTGTGTTTTTCCTAGTTAAAATTCGAAATCA
CACATGCTACGAGGAGCCCTAGGGTTCTACGGTTCGGAACATGCAAGTTTGTTATCCTGGCAGGGAGGAT
TATATGCCTTGACTTTAAGGACTATCTGGGACTCTCTCTAGTAGGGTCACAGATCCTGAAATTTATTCCC
AGACAACAGCTCCTTGTGCAGCATTCCGTGTGGTGGCGTTTGTGGAACATGATTTATTGCCTGGCTCCCC
CTCCAGCATTATAGCAAGTCATTCCCGTTTGCGTTTGTTATTTGACGTTTATATAAGAATAAGCTGATTT
TCGACATGGGAAGCTTTGTCCATGATTTTGAATGGAATATTCCATGAAAAGAAATTGGACATTTGATGCA
GCGTTTGATGCAGCGAAGGGACCAACTTTG
>dps.U11.5.Contig2645_Contig5905
GCTTCGCAGAGTCGCCGGTGTTGCCACACCAGCGAACGACTCTAAGATCTCTGTTGCTGAGGGGCTGCGA
TACCGGCTGCCACAGTACTCCCCCTAGAAAAGTTACAAATCTTCAGTTTTGTCTTTTCTTCTCATAAGTC
CGTAATGGGACCTTTGATAGCTGATCGTCAGAAAAGGTAGTCTCGGAATTCGCCATTAATGCTGGCTTGA
GCCTGTCGATTGAAATAGCTGTCTCTTTTCCATTAATGCGGATAGTGAACACCCGGTCTGATGACTTGGA
TACAATCGGGTATGGTCCTATGTACTGCGGCTCCAAGGGTTTTTCTACAGCATCGGTCCGGACAAAGACA
TGAGAACAATTGTGAATATCCTTAAGTAGAAAGAGTTTGCGCTTGTGATGCGAAGCTGGATTTGGCTTCA
CCACCTGCATTCTTCTCCTGAACTGGCCTGCAAAGTCGAGTGGTTCCGACGGCACATCCACTTCGGAAAA
GTATTCGTTGGGAAGACGTAACGTATAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGAAACGTCGGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>dps.U11.6.Contig3838_Contig6523
CACAAATCCCCCGTTGCCAAGGACCCACCTGGCGCCATTCAATAATATTTTTTTGTAATTTCTCTCGTTT
GTGTGTGGCCATCTCTCCCTTTCTCTCTGTCTGACTCTCTTTCTTCTTTCTAATAGCAAAGAGGCTAAGC
TATCGCTTTAATGCTGCCCCATGGCCTGGCCTGGCCCTGCCCGGCCTGGCCCGTGCCCTGCGCTTTCATG
CCACTTGGATTTTATGCTTTGTGCAACGACGTCTAATAGTTGAAAGGTAAATTGCAGAGCATTTTCCTGC
AAGGAAATCGGTGGAAACACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTAATGCGATCAAAGCGATTT
TCGAAAAGGAGGTTTCTCTTTGAATTACTTTCCAGTATGGGGGCCATCGATCTGTGGAGGAGGCGAGGGG
AGGGGAGGGGAGGCTCCCCTCGGATAATGCGCTTATGCCCGTATCGGCAGCTGTCAATGGGCTTGCGGCA
AGTTTTTATTGTCCCCAGAGATCTGTCCCGATAGGGCTTATATATCCTTCTGTCCGTCCGCACAGAAACA
CAGAAACGATGGCGGGGCGGGGCGGGGCAGTGCACACAGATAAATTGCATTGACAGTTTTCTGTACGGAA
TCGGGGCAAATTATGGACGTATAATTCAAATTAATAGCAGCTTATGGCACTCGAATGAACGGTTTGAACG
GTTTGGACGGTTTCAACGGCTTGAACGGTTTTAACGGCCAAAAAGTCAGTCGAGCAGCAAAAGCGAGTGC
CAAGTGCCAAAAGCCACGCCCCATCCAGGGGGCCCCTCCCCCCACAGGCAAGACCGACCCCATGCTGTGG
AGAGAAAAAGAGAAAAAGGAGAGCCAGATTTGGTTTTTGGAAAGGGATAGGAATAGCAATACTATGTGGA
ATACCCCACTCTTGGGGAACTTTTTTTTATGATAATAATTTTTTGGTATTTTAGGAGTGCTTTTTTGCTA
GTATTTTCTGTGCAGTTTTTTGCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAATCAGCACTCGTTTGGGCGTTTAAAAAGTATTTTTTATAGTAAATATTTTTCTTACATT
TTAAGCTGTTTATTTTTGGTGTATTTTGGTATATTTAACCGTTAATTTTTTTGGATTTCTTAAACGAATT
ACTTGAGCACAAAAAACATAATACCCTCTATTTATATAGGGCATTCATAATCCTCGAATTGCAGCGAAAA
TGTTATTCGATTGAGGTCGATATCCTCGGTGGGGCTGGAAAAGCCTTTAGTGCTGTTTGATTTTAAAAAT
TGACATCTGCTGCACACACAACTCGCATTCGTAGAGTCGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAGCGTGGCGTATGCGTAATCTGCATGCAAAAGTCAGTCAT
AAAACGGCCATCAGCTTAAACTGTTTTGCGGCCATAAAGGTTAACAGCAACTACACACACACANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCTCGCAGCCCTCTAGACGGGGA
GCGGATGCGAAAAAAGCGAATCAACTGCTTAAAATTTAAACGAAACAATGAGCTAAACTGTCCGCCCACT
TGCCACTGCCGCACTGCCACACAGCCGCACTGGCACCCACCACCCATCCCCACAGAAGGGGGGGGGCATT
CCAATGCCACACGCAAGTGACGGCCATGAAAGCGTAAAAATGTAAAATTAACACGCAGCTTCTGGTTTTA
GTTTTGTGGCGTTTTGCGGCGTTTTGCAGC
>dps.U11.7.Contig5305_Contig6323
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATA
ATTCTGTTAGGTCAGGGCCAGCCGTGACACAAAAACTTGTCGTTTTATTGGGACACCCACTAGTGGTTTA
CCAGTGGTACTACCAGCCTAGTACGTTTGGTGGCAATATCCGGAGGTCCGGAACGTCTACTTACTGGTGG
GATCGGGATAGACGGGAAAACTAGCGAACCTGCGGACATCACGGACACGGACGCTCCGAGGCAATGAATT
CTGTTACCGAATCTGCATCGCCAGCAGCTGTAGTTGCCCTTGGAGTGGCAAACGAGATCAACTGCTGCAC
ACTTGGAGTATGTGACGGCGCTTCGGCCGGGGTATGCTCGTCGCGCCGGGTTCCACAGAAATTTGTTTGA
TCTCTGGGTGTGGTAGCTGAAAGAGAGTCTCGTGGTGCAAGAATAAGGCGGGGCTTGAGCGGTAATAAAA
GTCTTCTGGTCGGTGTCGGTTAATGCTCTCCGAGGAGAAATAATGTTGCGGAGGGTTAATGCGCTCCGAG
GAGAAGTATGTTGCGGAGGGTTAATGCGCTGCGAGGAGAAATAATGTTGCGGAGGGTGAATGCGCTCCGA
GGAGAAGTATGTTGCGGAGGGTTAATGCGCTCCGAGGAGAAATAATGTTGCGGAGGGTGAATGCGCTCAG
AGGAGAAATAATGTTGCGGAGAGTGAATGCGCTGCCATGTGAAGAAAGGTTGCGGAGGGTTAATGCGCTC
CGAGGAGGGGAAAGGTGGCGGAGGTGTAATGCGCTCCGAGGAGGATCGCTGGGGCTGCTGGTGGCTGCTA
CTGATGCTTACCTCCCCACTGGCTGGAGCCGAACTGATGCTGATCGCTCTGGCGGAGCCCCTTTTATTTC
CGAAAATCAGCTGATCCGTACGGTATGTCCCTAGCGCGTTGTGCTGATGTGTCCCTAACGCGTTTGTACG
GATCGGCTGATAGTGTGCCCGTTGGTGCTTGGGTTATGGTCACACTTGGGGAGGTAAACTGTGGGTGGCT
GTGCTACGGGCCCATTGGTGGTGATCAGCTGTGGTTGGTTTTATGTATCTTTTATTGTTTGTTTATTTAT
ATTTATTTCTTTTATCCTTATGTGGCAGGTCTTCATGTATTTGTCGCTTATGTTCTACTTATCCTACTAA
TACTTATTTTTTAGTCATCATGGCTTGTCTTGGTGTTTCTGGTATACTTAGTCTTCAGGGTTTCTTCTCG
GTGTTTCTAATTGTTGTGGTGTTTGTGGCGGCGGCGGTCTTCCTGGTGCTGGGCGTCACAAGTAGTAGGA
GTGATCCCACGGAGTGATCCTCTTGCGCTTCAGCTATGAGCCATGGCTATGAGCCGATCGTATTGCTTTT
TAAAGATAATGGTCAGCTCCTTAAAGCCCTTCTGCGTCTCTACCATGTTATTCTCAACCGCACGGTATGC
CTTACATCTGTAGTGCAAGCCATTACGATTTAAGATGGCATCACCCACCCGTAAACCCAGAGCATTTTGC
GTGGACTAAGTTGTCGCAGAGCAGAAGGGGATACTCGGCTGATCATAAGTGATCTCTTTCCGACAAGTTT
TTTTGGCAGAGACCACAGTAAAGTCTATTATAGGATGAACAACTCAACGAAATTTTAACAAAACAAAACC
AAAAAATTTCTGAACAAATAGCTATCAGACCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>dps.U11.8.Contig6733_Contig6829
CTGAACACAAATCCAAGGTCAGATTTGCTACATCACGTCAGGCTTTTTTCTTAAACTCAAAACCAATATG
GTCAAAACATATGGAAGCTCATTTGAAAAATTGATCGTATTTGTTTGAAACTCGTCATTCGGTGGCCTTT
GGGTTCGCTGATTACAAATTTGATGTCAGTTGCTTAGAAAATATACAACGTAATGTGACGGCGCTTCGGC
CGGGGTATGCTCGTCGCGCCGGGTTCCACAGAAATTTGTTTGATCTCTGGGTGTGGTAGCTGAAAGAGAG
TCTCGTGGTTCAAGAATAAGGCGGGGCTTGAGCGGTAATAAAAGAGGTGGAGCTATTTTTATTGTTCTTA
AAAAGGTACAAAGTTTGGGTAGGTGCGCGGGTTTTTTTCTTCTGGCTCTTCCTTCGGGGTCGGCTGCCGG
GGTCGTCCTTCGGGTGGGCCGCACGTGGCGGATAGTTGCGTGCGGGTCCACGTAGTCTTCTGGTCGGTGT
CGGTTGAGGGCGCGGAGGTCTAATGCGCTCCGAGGAGAAGAATGTTGCGGAGGGTAAATGCGCTCCGAGG
GGAAATAATGCTGCGGAGGGTAAATGCGCTCCGAGGAGAAATAATGTTGCGGAGGGTAAATGCGCTCCGG
GGAGAAATAAGGTTGCGGAGGGTAAATGCGCTCCAAGTAGAAATAGTGTTGAGGAGGGTAACTACGCTCC
GAGGAGAAATAATGTTGCGTAGGGTAAATGCGCTCCGAGGAGAAATAATGTTGCCGAGGGTAAATGCGCT
CCGAGGAGAAATAATGTTGCGGAGTGTAAATGCGCTCCGGGGAGAAATAAGGTTGCGGAGGGTAAATGCG
CTCCGAGGAGAAATAATGTTGCGGAGGGTAAATGCGCTCCGAGTAGAAATAATGTTGCGGAGGGTAAATG
CGCTCCGAGTAGAAATAATGTTGCGGAGGGTAAATGCGCTCCGAGGAGAAATAATGTTGCGGAGGATAAA
TAATGTTGCGGAGGGTAAATGCGCTCCGAGGAGAAAGAATGTTGCGAAGGGTAAATGCGCTCCGAGGAGA
AATAATGTTGCGGAGGGTAAATGCGCTCCGAGTAGAATAGGAGGATCGCTGGGGCTGCTGGTGGCTGCTA
CTGTTGCTTACCTCTCCACTGGCCGGAGCCGAACTGATGATGATCACTCTGGCGGAGCCCTTTTTATTTC
CGAAAAGCAGCTGATCCATACGGCATGTCCCTAGAGCTTTGTGCTGATGTGTCCCTACCGCGTTTGTACG
GATCGGCTGATAGTGTGCCCGTTAGTGCTTGGGTTATGGCGCACTTGGGGCGGTCAGCTGTGGGTGGGAC
AGTGGTTGGCTGTGCTTCGGGCCCATTGGTGGTGATCAGCTGTGGTTGGTTTTATGTATCTTCATTGTTT
GTTTATTTCTACTTATTTCTTTTGTCCTTATGTGGCAAGTCTTCATGTATTGTCGCTTATGTTCTACTTA
TCCTACTAATACTTATAGTTTAGTCTTCATAGCTTGTCTTGGTATTTCTAGTATAATTAGTCTTCAGGGT
TTCTTCTCGGTGTTTCTAATGTTTTGTTGTGTTTGTGCGCCGGCGCTTGGTCTTCCTGGTGCTGGGCGTC
ACAGTAATAAAAATGGCTTTTTTCAATTACTTGTTTTGAAGAAAAACGACGGCAGAAAGTGAAAAATTAG
AAGAGTTTTTCTAATGAATTAACCGAAAACTTTGGGTGGCTGAAATTTAAATTATTTATTCGGCGGGGCG
AAAAATTGATACGCTTGATCTATTTCAATGTTAGCGAGCAACTATACTTCCTTCACAATTCAAATCTCTT
ACTCTAGCTAACCTACGGTGGCAAAGCGGGGCGAATTCGTCAAGAGCGAGAGAGCGAGCTTTTATTGCGC
TCCCGCTTTGCCCTAGCCTAACTTACACTAGACTTCATAATTAAGATCAATAACTAATAATCGCCGCCAT
GGATGGAAGGTCACGCAACACCGGCCCCGTTGAACGCCTGCATCGGCTTCAACACATTGGGAGCGGCGCT
AATTTGTGTATGGCCCGCCGAAAAACCGCTCCAGTGCTAGTCCTTATTTCGCGTGCGTGGCGATGACCCT
CCCCACGAGCCACTCCTGAGGCGGCAGATTGCCCCGAATCTGCAGCCCCAGGACATATTCGCGGGACCAT
CGCTGCCAAAACGCTTGCCTGACTGACGAG
>dps.U11.9.Contig7902_Contig7295
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTCCTCGAGTTTGGGTATTTGCTAGTTGTTCTAGCCTCTCTCGAATA
TGTATTGGGAGGACTGTTCTCTCCGAAAATTGTAGTAGTTGCTTCTTTTGGGTCTCTAGTCCGTCCAGTT
TCTCCAATCCGAATTCCTCGCAATAGTTCTGTAACTCCAGTTTCGTTGCTTGGTTTATCCATTGTTTTGC
CATCTTGACCTTTGAGATAATGCTTCCACAACCTGCTCGGGCGCCACTGTTACGGCGCTTCGGCAAGGGT
ATGCTCGTCGCGCCGGGTTCCACAGAAATTTGTCTGATCTCTGGGTGTGGTAGCTGAAAGAGAGTCTCGT
GTTTCAAGAATAAGGCGGGGCTTGAGCGGTAATAAAAGAGATGGAGTTATTTTTATTGCTCTTAAAAAGG
TACAAAGTTTGGTAGGTGCGCCGGTTTTTTTCTTCTGCCTCTTCCTTCGGGGTCGGTTGCCGGGGTCGTC
CTTCGGGTGGGCCGCACGTGGCGGATGGTTGCGTGCGGGCCCTGGTAGTCTTCTGGTCGGTGTCGGTTGA
GGGCGCGGAGGTCTAATGCGCTCCGAGGAGAAATAATGTTGCGGAGGGTAAATTCGCTCCGAGGAGAAAT
AATGTTGCGGAGGTCTAATGCGCTCCGAGGAGAAATAATGTTGCGGAGGGTTAATGCGCTGCGAGGAGAA
AGAATGTTGCGGAGGGTTAATGTGCTCCGAGGAGAAATAATGTTGCGGAGGGTAAATGCGCTCCGAGGAG
AAATAATGTTGCGGAGGGAAATGCGCTCCGAGGAGAATAGGAGGATCGCTGGGGCTGCTGGTGGCTGCTA
CTGATGCTTACCTCTCCACTGGCCGGAGCCCTACGGCATGTCCCAGCGCGTTCTGATGATGTGTCCCTAC
CGCGTTTGTACGGATCGGCTGATAGTGTGTCCGTTAGTGCTTGGGTTATGGTCACACTTGGGGCGGTCAG
CTGTGGGTGTGACCGTGGGTGGCTGTGCTACGGGCCCATTGGTGGTGATCAGCTGTGTTTGGTTTTATGT
ATCTTCATTGTTTGTTTATTTATACTTATTTCTTTTGTCCTTGTGTAGCAGGTCTTCATGTATTGTCGCT
TATGTTCTACTTATCCTACTAATACTTATAGTTTAGTCTTCATGGCTTGTCTTGGTGTTTCTAGTATAAT
TAGTCTTCAGGCTTTCTTCTCGGTGTTTCTAATGTTTTGTTGTGTTTGTGGCGCCGGCGCTTGGTCTTGC
TGGTGCTGGGCGTCATACTCCCCTCTCCTTTCCCAGTGTGGCGTTTTCGGTTGTCTTTCCTTGGGGCGCT
CGGAACCAGGTGCCGATGCGGACATCTCCCGTTCGGCCGATCTTGACCCAGCACACCTCCTGTTCCTCGT
TCCATAGTTTGAACCGTCTTTGCGTGTGTTTCGGGCGGTCTTCGAATTTCTCTTCGAATTTCTCTTTGAT
TTTTTTTATTGATGCGTCCGATAGCTCGATGCTATGCGGAATGTTCCATTCCCTCGGGATGCTACCCCTC
TGGCTGGGCTTGCATGGTTCCGGTTCTGGTGTTTGCCACTCGGGGTTTAGGTCCAGCACG
>dvi.U11.1.scaffold_9
TTGGGGATTGGGAGGGTATGATGAATTCGTCGAAGCGTTTTATAGTGACTGCCGTATTTAACCCTGGCCA
TCCGGGGACTCAGTCAGAATATGTTTGTAGCCGTTGCTGCCCAAATACATGTGCTCCTTGCGGAACTGAT
AGGGTACCTGCGAAGAAAGCTGCTTGGAATAAGTTTCATATATTATAATCTGGGTTGAGCGTTAATACTT
ACAGCGCCCGGGGCAGGGCAGGGTATAGCAACTGTTGCAATCTCTCGCAATTTGTTCATTGTGCGTAGAC
TTTGATAGAAGCTGTGCATTACATACCACTTGATGCCATCTATGCAGATCAGCGTATAACAGATGATAAC
TAAATTAAAAAAAAATAAATAAACAAACAGTTCTTAACTCTAAACATAACCTCCAAAAATGTGCATGATA
TACTCACAATAGGAGTCCTGCCCGCCAAATATCATGGTCAATTTGGTATCCTTTAGCATAAATACAAAAA
CGGCAAGGGCAATCAGACCCAGAAACTCGAACACCAGCCAGGGTATAATTAGACCAGGTTTATTCTTGAA
CACGCCAAAGAACAAGGATACGGTGCTCAGGGCATAAGCGATGGTAATTCCTGCCAATACATAGAGTGCA
TTTTCGGTAGCATCCGCCAGTTGAGCCGCGGTTTTGAGGCGCATATCATTGTGAAATGGTGACATGTTGT
AGAATCCGCTGTCCTTCTGATCCAGAATATCCAAATCGAGCAGATGACGCATTTGCTCCGCATGCGATAG
ACAGAGCATCACCATGAAAAGTATAGCATGAGCAATGAGCTGCGGAAAATAGGAAAATAATAGAGTATAG
AAATATTTGAATTCCTCTTTGAATATGCTCAAATAAAACTCTGCTGATCTTGCAGGGCTGTCAAATTTCT
CTGGACACATATTTCAGCAGTTGCGCCAATAATTCACAACCGGTTTTAGCACTGTGCAGATGAATATGCG
TCTCGTGTCAGGTCTCAATTAAAAAGGGCGCTCGTCTTAGCACGTTCCAATGTTAGGAGCTTGATTGCAG
ACGCATTGCGCCGTTGGCTCATCCATACGCTCTTCGTGGGTGGGGGCGTGCGCTACATTGCCGCCTTTGA
TGGGTTCTGGCGTGCTCAGTGGGGTATGGCTTTGCATATCCAGTGCGTAATTTTTGTATTTAGGGGCAGG
CGGCTGCACTTTGGTGACAACCGAATTGCGGATTTGTCTGCGTGTCGGTGGTCCGTGCGCTGCGCCCCCA
TTTATTGATCTATCAGACTGCAGCTGCATGCATAAGAGTGGAAGGTGGTGGTGATATGGACTTACCATCT
GGTAGATGCTAGTCAGCAGAGCTGTGGTGCGCAAGTTGCGAGGTGATATTGGTGACATTAACAAATCCCA
GAGCTGGCGACAGCTCCAGATGCCACCTGTTTTGACCTTGGGCAGCAGCATTTTCCGGAGTTTTTTCCAA
GCTTCTTCTGCTTCTTCAATCAATTTATGGATTTTTCCGTTGGCTCTCAACTTTAGCTGCTGGCGGTAGC
GAACTGTTTCGTCATCCAATTGGCAATGAAGCTTCGAGGGTGGGTCTTCATTTACGGCTCCCACGTAAAA
GCTTTCGTGCTGCTGCACGGCGAAGCCAACGCTAGTATTGGAAATTGTTCCAAGGTTTGTTATGATACTC
AAAAAGCTTTTACTTGTTTGTGTTCTATGAAAACTATCTATACCCTTTCGTTTATGAGGTCTATTAGATA
TAGTGAATGATTTGGTTGATAAATTTAGTTTCTTTTTGTACATATAATATCTATGCATGTTTGGTTTGCA
TATATGCAAACATGCAGGCATGCGTACATGTCGGGGAAGCACATATGTGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCTCCACCTTCGACTGCTCC
ACCGCCGCACGCTGCTCCTCCACCGGCCGT
>dya.U11.1.chr3L
CGTAGACTCTGGTAGAAGCTATGCATTACATACCACTTGCAGTAGTCCATGCAGATCAAGATGTAGCAGA
TGATAACTGATATATAAGAATATTATAAAGCATACATTTCAAAATGTAAGTCTAAATTCCAAACTTACAG
TAGGGCACTTGACCACCCAGCAATTGCACGATTTTCGTATCCCTCAGCATGAAGACCAGTGCCCCCAAGC
CGATCATCAAGAGGAACTCCACGACCAGCCAGGGAATGATTAGGCCCGGTCGATTCTTGAGGACTCCGAA
AAACAGGGATATGGTACTCAGGGCGTAGGTACCCGCTATTCCGGCCATCACGTAGAGTAGATTCTCCGTG
GCGACGGCCAATTGGGTAGCAGTTTGCAGCCGCAGATCATTGTGGAAGGGCGACATGTTGTAGAAACCAT
TGTCCTTCTGGTCCAGGATGTCCAGCTCCAGGACCTCGCACATCTGCTCGGCATGAGCCAGTCCCAAGAG
CACCAGGAACAGGGCGCAGTGGGAGATCAGCTGAAAAACACATAAAACGAATTTTAAGGATCACGTTTTT
CAATAACATTATAGCTTAAAAAGTTATTATAAAATAGTATATAATAATTACGAATTGGTGTTTGTGAAAA
CCGGAACGAATTCCACCACCATGGAGCTTCAGCTGCTCGAGATGGTCATAGCTGTTCCCTGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTCCTGGCACGTTCCCGATCACGGAACTCAAGTGCAGACGCATTGCGCCGCAGG
AGCGTCTCCTTCGCTCCGCTCCTGGATTTCCAGTGGTGGGCGGGGGCGAGCGTTCCATTGCCGCCTTCGA
CGCCTCCTTGCGCGCCCAGTGGGGTATGGCTTTGCATATCCAGTGCGTAATTTTTTGCTTCTGGGGCCGC
GGCTGCACATTGCGGATTGCTCGGGGATTCCCCGAATCTCCTTGCGTGCCCGTGCGCTGCGCCCCGCCTG
AGATATCCATGTTCTCTAATCTTACATAATGTTTGCCTAGTGATATATATCTTTGAACTTACCAACTGAT
AGATGCTGGTGAGGAGGGCCGTGGTCCTGAGGTTCTTGGGCGATACGGGTGCCATTAGCATCTCCCAGCT
GCGGCGACAGCAGTTCTTCCACTTGCATCCTGCGCCTGATGCACTGCTAACCGTCGGCAGCAGCATTTCA
CTATAGTTTCTCTAGTTTTCCGCAATCAATTTATGGATTTTTCCCGCTTTTCCAGTTAATCAAAAAGCGA
CGCAACTGTTCCGCGGCTGTTTCGTCATGCAATTGGACTCGGAGACGTCGCGAAAAGGTGGAGGGGCAAC
ACCCACGCAACTCAAACTTTTCCGGAGCTTTTCCGCTGGTTTGATGCTTAAACTACACTGGCGAATTTAT
CAAAAAAAAAACTATATGAATAAAACAACGTTGAGTGCCAAGGTCCGCGAAATGTTTTGACTTGGCGGAA
AGCTTTTACGACTGTGTTTTGCTTCATACTCTGTCGTTAAGTTTTATTGATTATCTAATGCGTTTGGTTT
ATACAATACATATATAAAGATAATTCACAAAACAAAATAACTATAGTTAAAAAAAAATATTTTGGATTAT
TAGGCACTAATTCTAAGAGCTTACATTACATAAGTAATCTATCTTTTAATTGGTGACCCGGATTCATTAC
TTCAAGGTGACCCAGGCAAAACGATGACTTGTATATAGCAAGGCAGATATATTTTAAAAGTTTCATTTCG
TTTTCCAAAAATTACAATATTTATAAACATATGACTAAGGGTATCTAAACGTTCTCCAAAAAAACAGCCT
TTTAGCAAACATTTTTTGGGGGTTGTTTTCCTCTTGAAAACGCGCAGATGTTTATCGCCCCATTCACAAA
GCTTTCTTTTGACTTTTCGAAGCTTCCGCC
>dya.U11.2.chrU
TAGTATGTTACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTGAAGACCCTCCTCTGCACTTCCACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCTACCTCATTCATGAGTTTGAGCGTCAC
ATATTATTTGCTGTATTATACTGTAATATATACTTATTTGTTATAAAATTAAATGGAAATAATCAATCTG
ATAAATGTTTATTTTTATTGATTTCTCCTTAATATCAAGTGTAAGAACATTTTAATTAATTGTGTTCAAC
GTACTTCCCCTTCAAATCTTAATCCAGTGAATTTATATACCAACATCAACATTTTCGTCTTTAATATAAC
AAAAACTTTAGCCACAGAAACGCGTGGCCGGGTCAGCTTGCTTATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTGTAGAAGACCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
>lcl|scaffold_3567:1865-4064
AGTCTGGGGTCCACAACTGTCAAGACAGGCTTCAAAGACTTGTGGCCCTTCCTACACCTCGCCCGGCCTG
GCTCTCCTCACTGACTGGCTGGATGGCATTCCTCCATTGCCTGGTGTTTTTTTTGTTGTTTTTTTTGCTT
TTTTGCACCCTGACATTCAGTCTGTGGCTTTCGGACCAAAACCACAGCAGATATTTAGAGTGGAAAACAC
ACAAAACCCACAACGAACCAGAAGACGAACTTGTGAATCGACTATTTTCAGAACCCAAATCAGGTTCCTG
CTGTAAGCGGGAAAATTGGAGTGTGAAGCTGTAGAAACTCCAACGGTTGAAAGGAGCATCGTGCTTGAGT
GGATTTTCTAAAACTCCAAGTCCCAGACTGATTCAGCCGGCAGACCACCTGCACATTCAACCAAATGAGG
TCCAATCGGCATATTCTTAGTAAAATACTGTTTATCCACCATGACTGCTCGCCTGTCTGCCACAGTGGAG
GATGGGTTTCTACTCTCTGTGAGTCGTTACGCTCCTCACTCAAATGCTGCAAATGTTCCACATTAAGAAA
ATTCTTCTTTTTCTTTGTTCTGACCAAATTACATCCATGTCTTTGTGACGTTTTCTGATTATTCACACGT
GTGGCACAGAAGTGGCATCCGAGCACATGGGGTGGCACGTGTGAGGGCAGCTGACTCACCTGTCGGCCAA
ACGTGCTCAGATTTCCCGCCGATTACGAAACGGACGCCGGTCGCCTGCAGAGATGGGTGGCACGCCGTCC
GCGGGACACATCGGGGCGTGCGAACGCGCGTCTGTGTATTTTAACATGTGTGTGCATCCACGTGTGCACG
CTGGAGCAGAAGGGCAAATGAAAGGAAATCACAGTAATGCGATTTGACGTGGCGAGATGAACACGCGGGG
AACTTTTCTGTGGGGAGACGACGAGGCATCGGGCCTGGACCTGATTGTCAGCTCGTTGTAATCCTTCTCA
TACTTCAGGAATTGACAAAAACGACCAACTGCCTCCGTGAGTGGCACACGTACAAATGGCCAAAGACAAG
AAGTGTATTGAACTCAAGTGTACTCTTTAAATCACTTATTAAATATGGCTCCGATGAGGGGTGACGCATC
GCTCCGCGCAACGACGGGTCATCGAGGGGAGCGCAGCGCTCTCATTGGCCACCAGAAGACCCAAAATGAG
TAAAAAAGAAAAGTGGATCATGTGGCTGATCCATTTATATATCAGGATGTGGTGTGGACCGGAACAAGAA
GACCCCATTTGCACTAATAAGCATCATTTGACTTGGAATTGTTTGGAGAGAGCTGGATTGAAGGGGGAAC
TCCTAAAGTTTTCCCACATAATAATCACATTTTAACTTTTCCTCTAATGTTGGAAGAAGCTGTGTTCCAG
CGCTGGAACCCAGCGTTTCTGGTGTGTTTTTGTTTTTCTGCCCTGGTGGTTTTAATGAAAACGGCAGATG
TCAGTTCTACAGGTATAGATTGAACCATTTTATGACTTTCCATAATGTTAAGGGTGGGGGGGTGCTTATA
CATGCTAAACGTGCTGATTTCGATTGTTTTAGCATTGACGACAACACTACAACTTTATATTTCATTATAT
ATCATGTGGCCTCAAGACAGAGAACTCATATATTTGGTCTCAAAACATATTTGCCACTTCAGTCCTGCAT
TAGCAACTAACGACGAGCTGCAAAACAAAAGAAAAACCCACAAGCAAGACTTTAAACTGGTTGTATCTAT
TTCAGGGAAAAGTGAAATGCTAATTAGCCTTGCCAATGACATGTTAGTGGTGTTTGTCATGTCTGGATGG
AGTTTTCCATTTATTCAAAAACAGACAGAAAATGTAAGGTTTCTGGACTCAGACAGGCCGCAGTCAAAAA
ATTGACCCAGGTCAAATCAGGAAGCATCATATATGAAAATGTATCGTTGGATCTTTAGTATTCACCACTC
ATGGGAACCAGACAGGAGCTGGAAGAGGACAACACACCCCCACGAAGCAGCCGGGAATCTGAAAGAAGCA
TCTCAAGAAATTTGAGAGCGTTCAATGAACATTTGAGCAATGCTGATGTCAGCCTTTACGACCTTTGGGC
ATCATAAAACACAGCTTGTGCTGCACTGCTCTCTTTTTTTTTAATTTAATCTCCAGCAGTCAACATGACA
TAACTAACAAATGTAGACATTTCATTAAAA
>fru.U11.1.scaffold_1896
CCGAATTCAGTCAGAAATGGTTTCGTCCGCTTCAAAAAAGCAGCGTTGGTAACAAACCTGCACGCGTCAA
AAATACCCTCCCCCCAACACAAAACAGACGAATAATCTTAGGCAAACGCTGAAAAGCATCGACCTAAAAC
CTTATAAACTTTTAAATAGTCAAACCAAGAAAAAGCGTGTCGGTTTTGCAGGTGTTTACAATACGTCACT
TGGTATAACCCAGTTAGCTAATGAATAAACAAACGGCAGGACAACAGCAGGTTCGCTCCTCCGAACGTTT
CGACGAAACATTAACGTTTATCAAACAATGCGCGTTGATCCTTTGTGGATACGTGTATTTGATGGCTTGT
CATCGCGATTCTTCCCTCCATTAATAGACACTTCTCGACAAATATCTACTCACGCTGCCAGGCGGCTCCT
CAATCACACTCGTTTTCTCAATGACGCGACAGGGTTTAGCGTTTTAAACCATTTTAACATTGCAAGTTGG
TTGAACTAAAGTTTCACAGCAAATCCGTCTACCTGGACGTCAAGGTGGAGGAAATGCATCAGGTGGCTGC
GACAACAGGTTGGACTTCCGGTCACGACAGCAACATTAAAGTGAGCCTCTATTGTAATCTTTACTTTTAT
TTTTTCAAAGCGGGTAATGTTACCAGGGGTGACGGCATACTATAAACACAAAGACACTTTATAGACAGGC
AATAAAATCTGTAATATTCGAAGTTCAACTGTGTGTCTGTTTTGGAATTCGACTTTGATTGGTTACAGTC
GTCATTTACTCCGCCCCCAAGTTACCCGTCAGGCACTTCTCTATTCAAACAGTCGATAAAATGTGTACAA
ACGCGCAGTAGCGCCCATTGTTATCAGCAATAATCGCCTCTCCTGTAACGGAAAATAGCAACATATCGCA
GTGCTGAAGAAATTCAGCGCGATTATTTAAAACTCTGACTGAGGAGGATGTTGTTTTCGGCCAGACCGTG
AGAGGTTCAGGTGCTTCAGTAAAAAGGGCTTCTGCTGTGCTTAGCACAGGCGGAGTGGTGATTATCACGC
CGCCTGCGGAATCGCCATCAAGAGATTTCGGAAGCACAATTTTTATAACTGGGACTGCCGGTGATCACAT
GTCCCGGCGTCCCGAACCTTCATGTTCAATATAACATCATTAAAACTCTTAAAATTCAAGGTCTCCTCAT
AGTGCTGGAGCGCTGTGCGTGAGCTTCAGTACGCATCCTATTCCAGTTACTTAATCTAGTTACACCCCGT
CTGAAAGTCCAAAAGTGACCGGACTGTATAATAATGCAGTATAATGTCGTCTGTATAATAAAAAACTGTT
TTTATAACAACATCCAGACCATTTTCAGCCCGCGGCTCCGCGAGCGCCGCTCAGCAGGAAGTCAGGCCAT
ATGGACGGAAGTGCGCATGCGCTGTAGCTGCTCGCGCGCTAGCGCCGCGTTTCTCTCCATTAAACGGTAA
GTGCGCGCTGTATTTTATGGTTTGTGTTTTTTTTTATTTAAAAAAAAAAACCTTCTTATTTAGAACCACC
AGTTTGTGCCGCTTCTACGACGGTGGTTCCGGCAGGGCGGCTCGGGTAAAGGGAGGAGGAGGAGGGGGGG
TTCAGCCGAGCGATTCGCACAGAATGGAGGGGCAACGCCGTCGCCGCGCCGTTGTTAGCCGTACGTGCCG
CCGCACAGGGAGACGTCATTTTGAGGGGGAGCGGAGAGTTAAAATGCAGAGTTACGAAAGGACGTACGGT
TCAGAGACAAGCGGCGCGCAGCCGTCACACTGTAAACGCGAGGCTTCAGCCGTCTCCGGCAGCGTCGTCG
GCGATATTGTCCAGGTTGCCCCCGCGTCAACCGCACGCCCTGGCGTTAGCTGTAATGGCTTCCGCCGAGC
ACAAGTGTGCGGAGCTGCGAATGTTGAGAGCTGCACGAATCGGGTCGCGAACACACCGCAGAACGGCATA
CTTTAGAATCAGGGTTTAGTCCCCGCACCCGTGAGCGGGGGCTCTTGCCCCGCGCCGTGGGAGCTAACGG
CCGTGCTAACGCTAACTCTGCTTTTGCGTGGAGTTACACGATAAACGTCCAGTTTTGCGTTTAGGTGTTC
GATCTAGAGACCATCGGGACGTTAGCCTGTTAGCTCAGTGGGGCTTCATCGGGATGCTGCTTTAGATGAA
GCTTCCTGATGCTAAAGTGCAGCATCTGTG
>fru.U11.2.chrUn
CCGAATTCAGTCAGAAATGGTTTCGTCCGCTTCAAAAAAGCAGCGTTGGTAACAAACCTGCACGCGTCAA
AAATACCCTCCCCCCAACACAAAACAGACGAATAATCTTAGGCAAACGCTGAAAAGCATCGACCTAAAAC
CTTATAAACTTTTAAATAGTCAAACCAAGAAAAAGCGTGTCGGTTTTGCAGGTGTTTACAATACGTCACT
TGGTATAACCCAGTTAGCTAATGAATAAACAAACGGCAGGACAACAGCAGGTTCGCTCCTCCGAACGTTT
CGACGAAACATTAACGTTTATCAAACAATGCGCGTTGATCCTTTGTGGATACGTGTATTTGATGGCTTGT
CATCGCGATTCTTCCCTCCATTAATAGACACTTCTCGACAAATATCTACTCACGCTGCCAGGCGGCTCCT
CAATCACACTCGTTTTCTCAATGACGCGACAGGGTTTAGCGTTTTAAACCATTTTAACATTGCAAGTTGG
TTGAACTAAAGTTTCACAGCAAATCCGTCTACCTGGACGTCAAGGTGGAGGAAATGCATCAGGTGGCTGC
GACAACAGGTTGGACTTCCGGTCACGACAGCAACATTAAAGTGAGCCTCTATTGTAATCTTTACTTTTAT
TTTTTCAAAGCGGGTAATGTTACCAGGGGTGACGGCATACTATAAACACAAAGACACTTTATAGACAGGC
AATAAAATCTGTAATATTCGAAGTTCAACTGTGTGTCTGTTTTGGAATTCGACTTTGATTGGTTACAGTC
GTCATTTACTCCGCCCCCAAGTTACCCGTCAGGCACTTCTCTATTCAAACAGTCGATAAAATGTGTACAA
ACGCGCAGTAGCGCCCATTGTTATCAGCAATAATCGCCTCTCCTGTAACGGAAAATAGCAACATATCGCA
GTGCTGAAGAAATTCAGCGCGATTATTTAAAACTCTGACTGAGGAGGATGTTGTTTTCGGCCAGACCGTG
AGAGGTTCAGGTGCTTCAGTAAAAAGGGCTTCTGCTGTGCTTAGCACAGGCGGAGTGGTGATTATCACGC
CGCCTGCGGAATCGCCATCAAGAGATTTCGGAAGCACAATTTTTATAACTGGGACTGCCGGTGATCACAT
GTCCCGGCGTCCCGAACCTTCATGTTCAATATAACATCATTAAAACTCTTAAAATTCAAGGTCTCCTCAT
AGTGCTGGAGCGCTGTGCGTGAGCTTCAGTACGCATCCTATTCCAGTTACTTAATCTAGTTACACCCCGT
CTGAAAGTCCAAAAGTGACCGGACTGTATAATAATGCAGTATAATGTCGTCTGTATAATAAAAAACTGTT
TTTATAACAACATCCAGACCATTTTCAGCCCGCGGCTCCGCGAGCGCCGCTCAGCAGGAAGTCAGGCCAT
ATGGACGGAAGTGCGCATGCGCTGTAGCTGCTCGCGCGCTAGCGCCGCGTTTCTCTCCATTAAACGGTAA
GTGCGCGCTGTATTTTATGGTTTGTGTTTTTTTTTATTTAAAAAAAAAAACCTTCTTATTTAGAACCACC
AGTTTGTGCCGCTTCTACGACGGTGGTTCCGGCAGGGCGGCTCGGGTAAAGGGAGGAGGAGGAGGGGGGG
TTCAGCCGAGCGATTCGCACAGAATGGAGGGGCAACGCCGTCGCCGCGCCGTTGTTAGCCGTACGTGCCG
CCGCACAGGGAGACGTCATTTTGAGGGGGAGCGGAGAGTTAAAATGCAGAGTTACGAAAGGACGTACGGT
TCAGAGACAAGCGGCGCGCAGCCGTCACACTGTAAACGCGAGGCTTCAGCCGTCTCCGGCAGCGTCGTCG
GCGATATTGTCCAGGTTGCCCCCGCGTCAACCGCACGCCCTGGCGTTAGCTGTAATGGCTTCCGCCGAGC
ACAAGTGTGCGGAGCTGCGAATGTTGAGAGCTGCACGAATCGGGTCGCGAACACACCGCAGAACGGCATA
CTTTAGAATCAGGGTTTAGTCCCCGCACCCGTGAGCGGGGGCTCTTGCCCCGCGCCGTGGGAGCTAACGG
CCGTGCTAACGCTAACTCTGCTTTTGCGTGGAGTTACACGATAAACGTCCAGTTTTGCGTTTAGGTGTTC
GATCTAGAGACCATCGGGACGTTAGCCTGTTAGCTCAGTGGGGCTTCATCGGGATGCTGCTTTAGATGAA
GCTTCCTGATGCTAAAGTGCAGCATCTGTG
>fru.U11.3.scaffold_1626
CGACGCGCTTTGTTTTACTTTACTGCTGAGTATATGTCACAAAACCGTGACGTGCGCGTCCACATCTCTT
CTATCCCCGGTGCTATTTCGTTGCTGGATCCTGTCACAGGGGCTCCACATGACGTCAGGCACAAATCCGG
GCCGTGGGGTTTTTTTTTGCGCAGTGCTCCGAGCGCCGAGCCGCTTCGTAACGTGACCTTCCTACGCCAA
ATGTGCGAGTTGTGCTGACTGCAGTGCGGAGAGGATGGACAGGCACTGTTGAACACACCCGATAGGAGTA
AACCCATCCAATAACACGAACGGGGGTATTAGCACAAGCTGGACAGATGCCACTCAAACACCGCGGGGGG
ACACTGTGGACGTGATATAAAATCTCAAGTCTAAGTGGAGTAATAAAAATCCTGTCAAGAACGGAACAGA
AACGCAGCAACGACTGAAGCCAGACTCTTGAATAGATCTCTAAATATAAATATATATAATGTTAAATTAC
TTGTAATAAATCATATAGTGTTGTAGTGCCACAAATGTCCGGTGATACTCCGCGCCGACAGGGGGCGCTG
TAGGATCTAACGTGAGGAAAAGCGGGAGCATTTCAACCAATCAGAGGCGGCCGCTAGAGGGCACGCAGCC
CGGGCAAAGGGAAGCGCTGTTGCCGCCATTTCGTGTGAGCTGTAAGCCGTTGAAGTAACGTTGTTTCTTG
GGTCCTTTAAAAATACACCCAGATTTCACGTTTTTAGCCGCAGTTACTCGTCCGTTCGTTATCAGTAGCC
GTTTGGCCCGAGGGTAGCGCGCAACGGTGGTTCTCTTCTCCTCCGTGGTTTCAGACAACGACCAAGATGA
GCTACGGGAGGCCGCCGCCAGACGTGGAGGGGATGACCTCCCTGAAAGTGGACAACCTTACGTATCGAAC
TTCTCCGGAGACTCTACGGCGAGTCTTTGAGAAGTACGGTCGTGTGGGAGATGTGTATATACCCAGGGAT
AGATACACCAAAGAGAGTCGCGGTTTCGCCTTTGTGCGGTTCCTCGACAAGCGCGACGCGGAGGACGCCA
TGGATGCAATGGACGGTGCCTTGCTCGACGGGCGGGAGCTTCGGGTGCAAATGGCTCGCTACGGCCGACC
CCCGGACTCCATGTACAGCCGGAGAAGTGCTCCGCCACGCAGATACGGAGGCTATGGACGCAGAAGCCGA
AGGTAAGGCCGTGGGCGCTGTATAAGCTATAGTGGCTAACGCTAGTTTAGCCAGCGATGGTGGAAGCACA
TGGATGCTAACGGCTGCATGCTAATCACCACGTTTGTTACGTAGTAGGCGGGCACGCTTTTACTCCCCAA
AGTTTGGCTTGTGTTCTGAACGGAACCTCAACTCGGGCCCTTTTCTCTGTCTTTAGCCGCTCCGCCAGCC
CACGACGCCGCAGACGCAGCCGCTCCAGGAGCCGAAGCCGGTCCCGATCCAGGAGCCGTCATCGTTCCAG
CCGTTCCAGGTCCTATTCCAGGTCCAAGTCCAGATCCAAGTCGAGGTCAAAGTCCAGATCAAAGTCCAGG
ACCCCCAGGAGGAGCAAATCGAAGTCCGCTTCCAGGTCTCGGTCCCGTTCCAGGTCCAAGTCCAAGTCCA
AGTCGAGGAGCCGAACCCCCCATTCCAGCAGAGGAGGGTCCAAATCAAGGTCTCGATCCAAGTCCAAGAG
TAGGCCTAAATCCCCAGAAGACAACGGAATAGAGGGTTAAACCATACCTGGATGGTATATCAAGGTTTTT
GTAGGCAGGTGAGTTACATAAATGAATTAATAACTGATCAAACATTAGTTATTGCTGTTCTTTAGCTCTT
ACTCCCAATGAACCGGGTCACAGTGCTTCTCTGTGTATGCTTTGATATTCAAGGCATACACAGATGAACC
TTTTTGGTTGCTGTGGCCAGCAAAATTATAAATGCACATTATAATTGACCAAAATGGGAATAATGATTGT
ATTTGTTAAGTGTGCATGGGAGGGACGTGGTGTTATATTAAGACCTCACTTAAATTTGGAATTCTTTCCT
CTAAGCTGCGGAGTCCTGTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGAGAGCAGT
TAGTGTGTGACCCGCCCATGTGACCTGTCTGTTGCTGTGGGCGATGGCAGTTGCTAAGGAGCAGGTCACC
AAGGCAACGGTGTTTGCCATGGAGCAGGTC
>fru.U11.4.scaffold_2582
GTTGAGCGTGTCTGCGTCTTATTTAAGATGAAAAAGAATCGTTTAAATATGTTAGACTGCTGACATTCAC
CTCTGCTTCCTCCGACTTGTGGGAGCCCAGTTTCTGTCAGTCGCTCGGATTCACGGTCACCGTTGCTGAC
TGAACAGATCTAATCAGACTGAAGTCTCGTCCTCTGACGTCCCTCTGCCGTCTCCTATGACCGTCAGTCC
TGTCGTTCCGTCGGACGCTGGAATTTTCCTTTCCCCGACGTTTGGATTTCCTAAATCAAGGAGGGTGTCG
GCTTTTCTCAGACCCTTAAATCTTTATGGAAAGTTTGGAAAGACGTCTTATCTTAGTGTTTTTAATTATT
TTAGTTCCCGTCCTGTTTAGACACAAAGAAATCTTTTTTTTTTTTTTTTTTGAATGCACAAATCCAGTGT
CACCATTCTTTTTTGGGCTCCAGAAGAAAAAGGCCTCATTTGACGGTGGCACACAGCCCGACACAGTTGA
TAGCATTTGGCATATTGTTTGACTGTTAATTAATCTTAATGCGGCTTCAACAAAGCTGGCTGTAGCGTGA
AAGTGGAGCAGTAGAAAGGCCCAGAATAATGCTGGTAATGTGGAGGCCTCAAGTCCCTGGAGCCCCCGTT
TGACTGGGGAGATGGCCACAGGTTGCACACACACACACACACACACACACAGACACACAGACACACTCTT
CTTCCCCCCTCCTCCTGCTTGTCTCCTTTTATCATATGTTTCCTCCCAGATCTGATGTAGTGGTGGGAGG
GTCAGGGGCAGAGGGTGCACAGGCATTATTAAGCCCACTTGAATTAACAGAACAGCCCCCAGCCTTTCCT
CTAAAGCCTTCAGCTGGGGGAGCTTAATCCCCATGGTCCCCTGTCTCGCCCATTAAACAAACGCCCCTGC
TCTCCCTCCCCCACCTGCAACACACACACACAAACACACACTCGTGTGTGATGGGTGTGTATCAATAGGG
GAACTGTTAAAAACACGTAGAGCACGTTGATGCACACATAAGTGTGCATCTACTGGTGATTACTGTAGTA
CTAGATGCATAGAGGTTCAAAGAAAATCTATGCACACACACACACACACACACATGCAATAGATGCACAC
AAACACTCAACAGCCTCAAGGGTCATACCTGCTTTATGAATCCCTGGAACAAATTGAATGTGGGGCTTGA
CACACGTGGGGCAGCAGATGTCTGGGTCATTAAGGTTAGGCCAGATGATTAGCATGACAAAAGCAGCCCC
CCCTAAAACATCCCGTCTCTGTAGGGGGCCCTGCTTTTGAGTGGGTTAGCTGAGGCCATGGGTCACAGGT
GATGTTGATTTTTGTGAAGGGCCACAGTTGATGATTGTCAAACTGCTTTGTGGTTTGATGAAAGACGCCC
AAACTGCACAGGACTTCCTCCATGAACACACACGCAAAATGCTGACATTGGACTGATAAAGGCATCGGAA
ATGGATTTGAAACACAATTTCAGGCACAAACTTCCACAGAAAACGGTCACAAACGGTGAATTCTGCTAGA
GTGAGGTATTTAGTTGTGATGGTCTAGGGCCGGGGAATGGATTACGTCTATGACGGTCCTCAAAGCACGT
CTATCGAGCTTACAGCAAAAACCTAAATGCATGTTTAGATCCTGTGTTTGCTCATGCATGGAATAGATTC
CCAGAAGAATAACGGTTGAATAGTTATGTGTAGGGACTTGTGTATTTACATGTGCACCTCATGTTTAGAA
GTGCGTGTGCTCGAGCCGTGGTGTGTTGTGCGTTGTGTAGCAGACTGGCTGCATCAGTATTCAGCAGTGG
CTCTCTATAAGAAGTGTGTGGGAGGTGGAAAAGAGGGTTTGCTGGTGGGTTTTGGGCAGCTCAGCCCGTC
CTCTGAGCAGAACGGTGCAATGGGCTGGAACAAAGCAGCACAACAGGGAACTGCTTGATTGGCCTGGCTC
AGCCAGGGTCCTTAGACCTGCCAAAGTGAAAAGCACTGCACCCGTTTACACAAGAGAATTAGCTTTTCTG
TGAGCCCAAGTGGAGGAAAGCCTGGACTAAAACCAATGCTGCCACATCCCCGGCGACCATGTATTCAGAC
AAAGATAGGATTTACTGCAAGGCCATGAAGCTGTTTCTTGTTTGGTGTGTTAAGGCCTTTTCATTCTGGA
GAAACTGCTCCATGGTCCTCAGAACTATTT
>fru.U11.5.scaffold_1753
TGCAGCCATGGGATGGGGACATCTCGTCAGAGACCCTTCTCCTCTTCATGGCCCAATAAAAGGTCCTGTT
CATCTCTCTGAAGGCTTTAATTCCAGTCACCTTGTCCTGACTCTCATCTTTGGTATTTCTCTGCCCTTTT
TCATTAATAATGTGTTTGTTCCTTAATTTTGGTTAGAATTAGTGTCCCGTCTCAGACCGAACAAGTAGGT
CTGACCTCATTTCCTCACGTATTTTGTTCCCTGTGACTTTTTACGTGAGTGCACTCGCCTTGAGTGTGAG
TCCCTGCTTCAGTGCCTTGCTCAAAGCCAACTCTCTGACTTTTTAGCACCAGAACGAAGCCCCAACTCTC
CTTTGGTGTCAACATGTAAAACCAGTGAGTAAGCGGGAGGAGGGAGGGTCAAAGAAAATAGAACCAGCTG
GGAGCAGCAGAACAAAAATGGAAAACGTCCCACTAATAATAATAATTTAATAATCATTTAGGTTGGTTCC
TCATTCAATTGTTTCCTCAAAAACATGACAGTTGCTGGTAGTTGATCTAAACGTCTTGAGTAAAAAGCAT
AAAATGATGAATGGGTTGTTTTTCTGATGCAAAAAAGACCCCGATTAACCTTTTCCATCTGGGCCTTTGA
CTCATAACATCAGTTACATGACAGGAAATAGTTAAAAGAACCAATTTGAACTGGATGTGATTGTGTTCAT
TCCTCCTTTTTGTTTCGGTTAATATAACGATAGTTTATGTGGCCAAACTAGAAACATGTCCACACACTTA
TTTCTCACGCTCAGGCTGTCCCTGTTTCTTTATCTCTTTGGCCTTCCTGACGTGTGTCATGTGCGTGAGG
TGTCATTTGCATTCGCTGATTGGTTTAATTCAACTAATGAGAAATGTAGAAGGAGCCTCCCAATTTGCCT
AAAGCCAAAAGGACAAGGCCTTTAATTCAAATCTTGTTTGTGTGAGACGGGAGCATCCATTTGGCTGATT
CGCAGAAATATGTTCAATTACAAACTCAAGGACATGAACAAAGACAGGAATATGAACCGGCGCTGGCACT
CACTTTGTGTATTCAGCGTTACATGCAAAGTTTGACAGAAGGCCTGGCAACACTATTAAAGGCACACATC
AGACAGCAGCTGTTAGAAGGAGAACTCCAGCTTTTAATCAGAGTCAATGATTATTTATGCCACAAGATAT
TTTGTATTAAAGGAGAGTGAGTGCACATTGTGGATTGCTCCACTAAATGACAGAAAAATCATCTCCATTG
CACAGTCTCTCAAGGAAAAGCACAGATTGGTTTCTGAAGCATATTCATGCAAAGGAACAGCATTTAGGAG
AATAACAAATTTGGAAATCTGGCCTATTTACGAGGGTAGTTCATGACAAGACAGAGAATCTAATGTAAAA
GCTTTTAACTGATCCGTGACACTAAATACACTTGGTTTACCTGTGTATGACTGTTAAGCAGAATAGAGTT
TATTACAATTAAAGTTTTGGGTTTGACGCCATTTCATTCAGGAGAGGAAATACGTGAGCAAAGTGCCAGA
TGAAAACATCTGGGCCTGTGACGTTAACGTGACGCGTCCCACGGACCCGTTCGTTGATCGGAGCGCGTGC
GGTGTGAGGTGTCTGCATTTACCTGAAATCACTGTACGGGTGAATTATCCAAAACCCCGCCGATTTAACC
CGTTCTTGCTCCCGCTCGACCGCCTTCTCGCTCCCAAACATCCTCAGGGAGAACTTGTTGACCCCCGGTT
GCAGCATCGCTCCAAACTGTCTGTGCATGAAGCCAGCCTGATATAATCTCTCGTCGTCCGGGAGAATTTG
ATCGATGCCATCCAACTTTACAAACCCCGGCTGCTGGTCCGGGGAGTCTTTTTGGGTGCCGCCGCCACCG
CCGGCCCCTTGCGCGCCTTGTTCGGGCGGCCCGTCGCCGATGGCACCCAGGGGGCTCTCCTCGCTGGGGG
TGACGTCCCCCTCGGTGATGAGACGCCTCTCCTCCGCCGAGTCCGACTCGTGCACATGCCGACTGGTGAT
GGACGAGAGGCTGCCTCGAAATCTCCGACAATCCCCGTTCGAACTGGTCTTCATCGGTCTCCCTATATCC
GTCTCCATGATCCCAGACTCGCCACTTTTGGTCTCCCCAATGCCTTTGCAGCTCCCAGCAGAGGTCGGCG
ACGGCAGAGGCTTCATCCTGATACTCTTCC
>fru.U11.6.scaffold_1147
ACAGCTAAAACACAAAGACAAGAGTCAGCAGAGTGAGTACCTTCACACACCCGACCTGATTCTTCCTGAT
CCCACTACAACCTCTCTAATAATCTGAATAAAATTAATACCAACAATACAAACAAATTACATAGTGTTCA
GATAAGGAGTCAGTCAGCTGTTTGCTTTCAAATGAAAGCTAAATATAACCTGATGATTGGAAAAACAACA
CGTGAGCTAAATTTACCAAATTGATAATGTCACAGGGTCAATATTGATATCAATACTTACACACCAAACA
CTGAAACCATAGCAGCATTATCAGCCATCTGGATCCCACAGGTCTCTATTCTCAATCATGCATGTGTGGT
AAATGAATAATTCCCAAATGTCATACTCTTCTTGCTATGACACAGAAATGTGGTGAGTATTTTTGTTTGT
TTTTACTGTACTTTCCTATTTGTCCTTGACGCACAGGTGCAGTCGCCAGTTCTCTGGTCAAGCAAAAGCT
CCAGGAGGTGATTCTCAAGAAGCAGAAACAGGCGGCACTTGAAAGAACAAATTCCAACTCTCTGAGCACA
CCTCCTGTTTCATACAGGTGACACAAATATTTATTGGTTCTGTATTATAGGGGCCTAATCTATAGTAAAT
GCATGCAATACCGGTAGTTCAACAGTAGGGAACACTTTTTGACAAAAGCGCGCGGTTGTAATGAGCACAG
AGCTTTGAGTGGTTGCACTTTCTGCTGATAGCATCTTCCTGAGTGGCTAGTTCTCTTGGTTTTTCGCAGC
TAACACTGCATGAGGTCGAGTTCTAATAAACCACATTAAAATATCTTCTTCTTCCTGTCCAGGTTGTGAC
TATTTTTGCGCAACCATCAACCAAAACTGATCTAGTTTATCAGCTTCAGTAAAGATACATTGGTCACATT
CATTTATTTATATATTTCTGCTTTTAGACGATGATCTGGTTTGCGGTGTTATATGAAATGTATGAAATCA
GTTATATCTCTGATGAAGTCTAAGATCTGAAATGCACAGAATAAAAGGCCACCTGCAACTCGATTGCTGT
GCTGTATTTTCACAGAAAGCTGGGCCCAGAACCGAGCCTACCCCCACAGCCTCTAGTCTCACCTACATTA
CAGTCCTCCTCGGAGGGTTCTGAAGGCACACCATTACGCAGAGCAGGTAACATGTGCAGCCAGCGGACTT
GATTCCCTGTAATAAACAGGATAATATGTTTAATATTGCTCGCATAAATTTATCCAGCCAGTTAGGCAAT
GTAATTTGTTTATGTTTGATTTGATACAATGAATGCTTTTATTAGATATTTAGCTATAATAGAACTCTTT
GCATGAGAGAGCATCAAGTGACACTTCTTGTTTAAATATGTTAGCGTCAGAGCCCAATTTGAAGGTGAAA
CATAAGCTGAAGAAACACCTCAACACCCGCAAGAGTCCGCTCACCCGCAAAGAGAGTGCTCCACCTACTG
TCAAACACCGAGTACCTGACACACTGGGTAAACACACACTCAGACCAAATGAATACATTTGTAATGCAGA
TTTTTTTTTTTTAAATATGGTAATCAGCTTTCAGGTATGTGATTAATATGCGTACACTTCTTTTGTCCAC
AGACTCATCTCCCAGCAGCAGTAGCACCCCTGTGTCTGGATGTAGTTCCCCCAACGACAGCCTGCCGAGT
GAGAACGGCCTGCTGCCATCTGCAGGTGTCCTCTCGCACGAGGTTAACACACACCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA
CAATAAATATTCCAATACAAAATCAACTTTTATCATTTTTAAACATCTTAATTTTATAAGCAAGAATAGA
ATCTTATTCTAATTTGGACTCAGCTACCTTTGCTTGACCTTTCTGGAACCTTCTGCCAAAGATCATTGAC
CTTGTGACACATCCTTAAAAAGGACAAAATAACTCAATCTTAACATTTCAAGTAAAAGAGATTCCTTTTT
GGGGCGGGGGACCCGAACACTTTTTGACATTTATGATCTATGAACCGATGGTGCTCAAAATTAATTAAGA
GAAACATAGAGGTAAGCCTGTCAGAAAGGTGATTTTGTGCTTGTGATTGACAAAGGTTAGCATTGTTCTA
TCAAGTAAGCACCAGTTAATTCATGAGTTA
>fru.U11.7.scaffold_143
>fru.U11.8.scaffold_1177
CCTGCTGCAGATACTAGCCATCGCTATCGGGCACAGGCCACGCTGGCATTATTCCATCAAACAAAGACAG
ATCAGATTATTGCAGATATGCAGCATCTGAGCACATTCTGTTCAAAAATGTGTTCAAAAATGTCAACAAT
CAGAATCCCTACTTTACTGTCTAGGGTGTGATATTTTAAGATTTAACAAAAAAAAAAAAGTGCATTCAGC
ATTAACAACCCTTCACACAAAATGGAAGTTTTCATTCAAATTCCACCAGACACACAAAGATACGGGACCA
AACCTCCAACCACAACCACTAACGTTACTAGGAGGTTCCCCAAGGCTCACTTCTTTGGACCAGTCCTGCT
CATTTTGCACGTTAACATAATTTGAACAACACACGAGTCACCTGTTGTAAATGTAGTTGCACCTCATTAA
TTCACTGCTCAGCCATATTTTAAGATATTATTCAGTCAAAACATGCTGTACAAAGCATCTACAGAAACTC
ATTAGCAAGCCTTTAATGAAGAATAGTGTAGTAACAGTCAAAATTATGATTACACCTGGCAGAAACAGTC
AATTAGGCATGAAGTTGTTGAGCAGGCATCACCCTGTGGGGTCATGTTTCTGTCGCCACAAACGTGAGTG
TGAATGACTGAATCTGGAGCGCTGTCAGGTCAAAGTTGACTGTAAGGTGTAAAATAAATACTGTCCACTA
CTATTTACACCTGAAGGTTGATCTGTAGTAAGTAAAGAAATGTTCACTTGATCAAATGTAAAACCCGTAT
CTGACAATGATAACGTGACCGTGAACATAATGTCTCTATTTATCAAATAGAGGAAAATCAAATAGAAGAA
CAAGGTGTTTGAAACATCAGCTTGTTCTTTCCGGCATAAATGACTTGATTATATTTCCAGTCAAACATGA
TCAGCGCGGATGTTATTTTCATGACCATCCGCAATCGCAAACTGATAAATGTTAATCTATTTATGCACTC
AATACGGCAGGGTTGAGCAATAGGATTTTAAGCAAAGCTGGGCACGACTTGATAAAATGCATCACATGCT
GACGACTCTAAAAGGATGGATTTGGTAACACTGATAGCACTATTCGAACGCGGTGATGAGTATCCCCCTA
TCCCCAATCCATCTGTTTGATAAGAGGAGAGATATTAACTATCACTGGCTTTATCAGACAGTTAATAAAG
AGGCGATAGTGTCACACACCTGATATGGAAACAGAACCGAGTGTAATATGTTTGATAAGGATGGGGTCAT
GACACATTTCCCAATTTATGGCTCAGAAGGGCAACTCCTTCACCTCTCTGAGAACACACGGCTAATATCA
ACAATAGATACAGCCGATACTTTTCCTGTGAACTGTTCAAATGTCGGCAGAGGCTCGTGTTTTGATGATA
GGCCAGGATCAAATTCCACCTTATACCACATTCTAGACATAACAAATACACAGTGAGGGCAAGAGACAAG
ATTGCAGGGCAGATTTATGTGGCCACACCCAAGAAATGGAGGAGTAGGACACAACAACAAACACTCTGAT
AAACAGCGTGAGGAGCTGAAAATGCACAAACAGAAGCTAACGTGAGCCAGAGCGGAGGATCCGATTTTAC
CTCCATCTATCTCACCCGCATCGCATCAGCAAAGAAATATACCTTTAGAGGCATGTGACTTTTAAAATCT
GGAAATAAAGATCTTGGAAGGGGCACAATGTGTGCATTTTAGTGACCTCTAGCGGTGGGAGCATAGAGCA
TATTAGCTGAATACATGTTCTCATTCATCTTTCTTTTTTAAAAAGAAAGTCCCTGGGAACCTATTGTGAC
TGGAAGACAACCAAATGGATTTTTCCACAACTGCATCTACAAGTTTCTTTCTATCCAGCCATTGATTGTT
GTCCATTTATCTAGCAGTAAAAAAAACAAAAACTAAATTATAGCTGAGAAGTGATAGTAACTCTGAGGGG
GACCTGAGTCCGTTTTATCCTGCTAAAAGGCAGCCAGTCCCGTAAGGTTATTACACAGTATGTAAAGGAT
TATGTAAATGTTATACACTCGACCTTTAAAATGTACAGATGAAGTCTCTCTAATCCCACTGTGACTTCTG
CTGGACTTCTGACGGCAACGGTTCCGCCATGATTGAAAAGAGTGAAGACAGGTAGCACGGAAACACAGCT
AAGCCGAAGACAGCAAGGCACAGCTTCGCT
>fru.U11.9.scaffold_11777
CCAGCTTAGGATCGCAGGGCTCGTTATTACACTCTTTGCTTTTCTCCTGCATTTGAAAAATGCCCCCTCC
TCCTATTGGCCCACTGATTGAGCATGTGCAGCAGGTTTCACGCTGCTCACTCCTATTGCCCACTTTTATG
TTGCCTGTGAGTTAATGTTTGTAAAGCCTCTCGCTTCGGCAAAGAATGTGCGATATCGCAGACTATTAAA
AGATTAAAGCTTTGCTTATTGCAACAAAATTGCTCGGTTTACGTTGTATTAAGATCAATGGTTCTTTGAG
AGCAACTCCAAACACACTTGAAAAGAAAAGCAATAAAAAGCCAAAAGCTATAAAACTGTTTCATCTCAGT
AAATTGATAGTTTAGAGCTTCTTTTTATTATTACCTTACTGGTGTTATTTTAAGCACATTACAGCTATAC
TGTTGGAGAAAGAATTCCCTTTAAGTTGCTATTACTGGGAAGAGCGGAGGCTTCCTTCAAAGATGGAGGC
AGATAAAGACGTAAAGGGAAGCCGCTCAAAGCTAAAGACAAAGAGATAGAGAAAGCAAAAAGGGCCCACA
AAAGATGCCTGTTGAAAACTAATCATGTGATGGGGCCAATTCTGAAAGATACTCCTTATATAATCTTATA
TTCAGAGTAGGGAACCCTATAAAGTCAGGGCAGCGAGTACAGATGTGGCATGGTCAGCCCATAGGCCTGA
ACTGGTGGCTTTAGGTGCTGGAATAATTGTGTTTCCCCACAGGCTGCGGTGGCTGCCNNGGGTCCCCGAA
CACAGCATGCCGTTACACATTTACAAGACCTAAACCAAGAGCGCAAAAGTCCTGAATGGGCTCCTCAGAA
TGAGACATGTTGATTAAATAAGAAGCAAAAGTTCACACACACACACACGCACACACACGCACACACCACA
AAGGACACACTGCTGCACAATAAGCATGATGTCAAAAGAGTTCCGTGCTGTAAAAGTGCCAGATACAGTA
CTTAGTGCCATTCAGGTCTAAAAAATAGCATTCCTCAAATACACTGCATTCCTCTGCTAACAATACTTAA
GTCTTGCTACCATAATCACATTTTGGATTAGCCCACTTTCTCGCTGATCGCGCTAT
>lcl|chr3_random:411470-413669
CTTCTGTTCTCTGAATCATGAAGCCACAAGCAAAAGATGAGGTTTTCTCTGATCTAGTGGTGTTGCACAG
TGCAGCCAGGCCATGGGGGTAGCACTGTGCTGGTAGCTGGTGCTCCTTGCTGACAGTGAAACCTATGTAA
AGGCTGGCTGGTTTGGGGACGTGCACAGCAGAAACACAAAACCTATTCCATTGGTGACTGTGTGTCTCAA
AACTTGTGTATCTGAGCCTCTAAGCCTCCAGGTGACCTAATAGTTGGTCTTCTTGGCTCCTTCTTTTTCT
AAGTCTGATCCTTTCTGTTCTCTGTTTCTTGCAGAAAAGAGGATGCTGAATTGGAGGGAAAATCTCATTC
TGGAAGAAACGGTGAAGACCCCCTTCATTGAATCTGCAGACTGTGGTTCTGCAGAGGGCAGCAGCTGTGT
GCCACCTGGGGTGGAGCAGCACATGGCCGCGTTGGTCAGCACAACACCAGCAGTGGTGCTGCACTGTTCT
GGCAGGCACAAACCAGCCTCTGTTAAATTTGTTACTTGATGTTTAGAGTATATTTTTCGTTATTTTTTTA
AGCATTGTAAATACATGTATTTACTTGTAATTTTGCTACAACTTCCTTGAGTACTCTGTTTGTTGCAGGA
GGCGATTGTCGAAGAGACAGTGGGCCGCTTAACTTAGTATCCAAGAAGCTGCAGAGCTGCTTTTGGCTCC
CAGCACTTCTCTGGGGCACAGAGACTCCCTTGAGGGTTTTGGAATGGTTTCCAGCCGTCCCTGCAGCCTG
TGCTCCCTTCTCACATCTCCAGGGAACAGAAGTGCAGCACGCAGCTCCGGCTGGTCCTGACAGACGGGCA
GGGGACGCTGTGTTTCAGGTGGGCGTGTGACTCACAAGGGAGGGGACAGCCAACAGTCTGCTGCGTGGTT
TGGAAGAGGCTCAGAGGTCTGAGCTTTGGTACCTGAGAAGCTTTCTGTCTGTTGGGTGTCAGTGGTTTCT
GCATGCCTGCTGCCTCAGTGTCAGGGTGGAAATCATTTGCTCTGGGCACCCGGTGCTCTGGTGTTGCTGA
TGGTGCTGGGAAATGCTCTGCATTGCTTCGGAAGCACAATTTTGATACAGGGGTGTTAGGAGACACAGGT
CTGCGTGGGGTTACTGTGGGGTTACCGTGAGCCTCCCCACAGCAGTTGAGGTGGGGCTTGTGGTGCAGAC
CAGCTCTTCCTGAAGGAAAGACCATCTCAGGGAAAAGGTGAGTTTCCCATCAAGGAGGACAGGGAGGAGG
GAGGTCCTTCTTAATACACAAACCGGTCAGGATGGCCAATTTCCAGGCCTGGATTTTTGCAGTCTGAGTC
AACCCCGAGAGCACTTGTGTCAGGTCAGGATGGGAGCTCTGTGGCCAGCGTGTTTGGACGAACACTTGTA
AGTTAAGCCTTTTGTGAAGCTCTGCATTAGCAGCAGAGAGCAGAACAAACACTTTCTGTCCTCAGATAAA
GCTGGTGTAGTCCACTTTGTAAGGCTAAAGCTTTTCCTCCAGAGGTGTGGGTTCTTGGTGGGATGGGGCA
GTTTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTCCGCCTTAGGGGACTTTGTTGGGTTGGTTCCTGGCAGGAAAGGAGGGACTGGCAGCAATTGGTCATTG
ATGGAGTTCTCCTTTCCCCCAAAGTCATGCTGGTTCCTGTGTTGTAAAGACAAACCCACAGGCAGCCAAA
GGTTTCAGGCCCCGAGGAGGAGCATGCCATCTCCTGGGAAGCCTCAAAACCATTTTCACATGGGAATTCA
CTGTGGGGGTGGACAGAGTCTGGGAAGGAAGGGAAGTCACAGCCGCACTGTGCTCCTCTGATCTCTGTGC
TGCGTGGGATCAGAGGGATCCCTGTGCCTGGCGGGGAGAGCCAAGGGGGAACCATTTGGTTCTGTGTGAC
CCCACCATTGGCTGAGGGCACTGCCGCAGTGCCTCTTCAGTGCGGCCACATCCTCAGCAGCGGAGCAGCT
GCACGCACTGTGCCCGACCACTGAGCAATGCATGCATGGAGGTGGCTCTATGAGCCTGGGCTGCTCCGGG
TTATGGGGCTGGGGGGCCCCACAGACCCCA
>gga.U11.1.chr23
CCTCCTTGGGCAACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCTCAGAA
GAGAGCGGCCTTTGCAGCTCCGTGCTTTCCTTGCAGGGGGTGGCGTGGCCTCGGTTAACACCGCGATTCG
CTTCCTGGCGATCCTCTGCAGCTCCTTAAGCAGCGGTGCCGCAGCACGGGGCCGCTCGCAGCTGTAATTA
CCATCTAAAATCAGACGAGGCTTTCAGTGCCCCTCTCGGTGTCCCCGTTCCGCTTTAGGACTTACACCGC
CGTAAGCGGCAGCAAAGACCCGGGCGCACCGGGAGGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGAGAGGC
CCAGCATGCCCCGCGCGATTTGCATAGCGCTCCGAGGCCAACGGGCCGGGGGAGAATGCGGTATTTTAGG
GAAAAAAGACACAGAATCGGCCAAAACCGCACTAAAATATAAGGGGGAGAAGGTAGAGAGTAAAACATTC
CCCGCTGTCTGCTGGGGAAATAGCACGAGCCTCGCCGCGAGCTAAAGGGGAGTCCGCCGCTCCCCAGCGG
CCGCAGGGCGGAAGCGAAGCTTTAAAAAGGGCTTCTGCCGTGCGTGGCACGGGGGGGCTTCGGCCGCCCT
CGCGGAATCGACATCAAGAGATTTCGGAAGCACAATTTTTGTGGGAGGGGTCGCCGGTAACCGCTCGTTC
TGGCGCCCCGGCCGTGGTGTGAAGAGCAGCGGGGAGAGGGGTCGTGGTCACGTGGGAAGTGGGGTCACGT
GGGGCTGTCCGTGTTACAGCCGGACGCGCTGCTATGGGGGCGGCTGAGGTTGCACCAACGGGGTTCCTCC
GTAGGGCTGTACGGGATGGGGTACCCGCAGTGCGCCGTCTGCACCCCAACTGCGCCCCGCGTGAGGGCCC
CCGCACAGCAGCTGATGGAGAGCAGCGGTTTGTACGCGTGTAGGTATATATATTTAAATAAAAGTGCGGA
TTTCGTTATAAAAGTCCCCCCCACGCCCCAGGGCGGGGCTCCATCCGAGGGTGGGCAGCGCTCCCCCGCC
GCCTCACCAGGCCTCGTGGTACACGTGTGAGAAGGGACAGTCTCCGAGCTGCTGTGAGTGGGGCCCATCC
CGATGGGGGCTGGCAGTCCGCTCCGCCCGGGGGGCTGCGCTCACCCCAGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTCGCT
GGGGTTCCAGCGGGCGCCGGCGTGCTCGGGTTCACCGAACGGCGTGGCGTATTCGGGTTCTGGTGGCAGA
GGCTCTGCGTACTCGTGGTGTTTTCCAGGCACGTCGTAGTGGCTCACGACCAGCGGCAGGGTGTAGCCTT
CGTCTGGGGGAGAAGGGAAGGTGGAGGAGCCCAACTGGCTGCTGGGGCTCACCAACAGCACGTCCGGCTC
GGCGTAGTCTGCGGTAGGGGAACGCGGCTCGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGCCCGCGGCCAGCCTTGGTTTTCAGATGTGGGTGGGCACAGACCCTGAGGGGACCCCGCAGA
ACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAGGTTCTCCCTTTGCAGAGGT
>gga.U11.2.chr4
AAATGTATGACGATACAGATAGTTTGATCCTATCATATTTTAGTATTTATGATCTGTTTATATGCAACTG
GAAGTTAGAACATTCCCAGGAAAGAGGAGCTTATTGGATGGAGTTGTGTTTGGTTCTGAGTCATTTGGTG
CTTTTTAGGCCATTTTCTTTTATCCTTGATCAGGAAAAAGGCTGAGGAAAGCAGATCTGAGCTGGATAGA
GTTGCCCCAGGCTGAGGGAAAAGGCTGAAAGAATGGGAGCAAGGGTTTGGTGAGCTTTCTCCTCTGATTG
CAGAGGGGTGTCTTTTGTAGGATAGCTCACGGGAAGGCCCTGATTAAAAAAAACCCTGTTGGTCAAATAA
CTCTTTTCTAATGGAAATTTTGCTCTGAAAATTGTGGATCTTCGGCTGACCCAGGGAGGTCACATTTATC
TCCCCCTGGGTGAGAGCAAGCAAAACAGCTGGTATGGATCACTGTCTCACACAGAATAACGATGGGAGTA
GGTGAAAGGAATGCAGAGCTGCAATAGAGACCGCTGTGCCAGATGCCGTGAGACAAGCTGCAAGCAACTG
CAAGTTATGAGAACCGTGCCTTGTTGTACTTAGCATGTTATTTGTACCTCTCTATATAAATGGTTGTGTG
CAGTTATTAAATGGCTTGGCTACTAGAAAAGATATGGCTGTGTGGCCTCGTCCCTCGCCGCACCTCAGCT
GATTATTACTTTCCAGGGGCCCTTGGACTTGTTTGACAACAGAAAATAGCTTATGAATTGTGACACCAGG
AACAGTAAAGCCCTGTGTGAAGACTAAGAAGGTGCTACATATTAACACCTAATTTAATGTTGTTAAATAA
CTGCATAACTAGCAGGCAGTCAGTGCTCTTCTCTGCATATGGTAATCCTGCATAAAATATGAGGAATTAA
TATCTTACTAAACATCCATTTGTGTACCATACAATCTTGCATGTGGCTTAAGCATCTAACACAAGAAACA
TGGGATTGTTCCATATTAAAAAGGGCTTCTGCCATGCGTGGCATGGGGGGGGGGCTTCAGCTACCCCCGT
GGAATCCATGTCAAGAGATTTTGGAAGCACAGTTTTTGTGGGAGGGGTTGCCAGAAACTGCCTGTTCTGG
CACGAAATATTTTTTTTTATCTGTAACTGAACTTGGGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>gga.U11.3.chr21
GGATCCAGTGGTGGGGCTCATCCCTCTTCCCCTCCGCTGGCTGTAATTAGGCTTTTGTTGTAGGTTTGCT
CCAAAGTGAGACCCCATTAGCATGCAGGATGGGGGGTGGAGTGGACGAGGGGGGACACAGAGGGGGAGTT
TCCCTTCCCCCCAGAACTGCGCTGCGCTGCGCTGATAAACAGTAAATATCGGGGAACAGGATTTCCACAT
TATCTGAGCACGGCAGAAAATCAAAATTTCAGTCTAAATCCGAGGAGACGAGGCTCATAAGCTCCTCCAG
CTGATACAGAAGCCGAGCCCAGCCAGCAAGGCTCAGGAGGCACAAAATAACACTTTTTTTTTTCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATACCCGAGTGTATTGAG
GACAGGGAGGGGGCTGGACACTGCCCATACAATGAACTTTCCAATCGACAGCTCTGGCTCCGCAGAGTGT
TGCTTGGGGATCGACCTGTAGGACACTGACAGCTGCTGGAGGATGATGGCAAACCTTTAATTAGCGATTA
GAGTGCGCAGCTGAGCACAAATCCAGCCCCGAATTAGGAGCCACATGGGGTCTCCCAGACCCTAAAAGCC
AACGTAGGATTCAGCAGCTCTGTCCGGCAGCTCTGATGGGGCCCTGAGCTGCACGTGCTGCTCATCGCAG
CCCCATGCCCTGCCCTGGCCCTGCAGCCATGCCCTTCTGTAGAGTGCCATCTCTCACACAGACATTTTGG
GGTCTGTGTTGCCTCCAGCTGGCTTCTAGGTATAAATTCTTTCCATGCTGTGTCGATCCAGGGGACATCT
TCCTGGATTCTGTCCCAGTGTGTAAGATGTCCCAGTATGTAAGATGTCCCATTGTGTAAGATGTCCCAGA
GCTTCATGCGTTGGCCTCAGATGTTCCATGCTCTTTCTCTCTTTGGTATTGGGGCAGCTGGTGAAAGCTG
GTTTTCCTAGAGTATTTGTCCTTTCCCTTCTCATGGAGATAATTCAGAAGTCCTAAAGCTGAAGCCCGAA
GTCCTAAAGCTGAAGATCAACTAGAAGTAACATCGTTTGTGTTCACGTCATCTGGCTCCAAGGTTGGAGT
GACTGAGCCATTCTGCACCAGTTTATAATCTGGCCATGCATGTTAAAGAGCAAGATTCTCTTTGAAAAAT
TAAGATATGATATTTGAAGATCCTTTGGCAGGCATGCAGGGCTCTCTTCTGCTGTTGAGCAGATGGGGCT
TTGCCTTGGGTTTCATCAGCACGGCATTTTGGCCTCCACTAAGCACAAGAAAGGCAGATGGAGCACCAAA
GTGTGCTTAACAGTGTGCACCAATGTATACGTATGATGTATCTCATCCAAACCAAAACCCATCTTGGAGA
CACATAGAAAGGCATAGGGATATTTCACCCCATATATTTCCAGCATCTCTTACTACCCATCCGGCAAGGC
ATGGAGCCTCAGAAGGCTTTTTCTCTTCTTGCCTTGTTGGCCAAACCATGGATTGCTCTGTTTTTTTTTT
TCTCATTGCATCCAAGTCTTTGCAGCAGCTCTTCATCTGAATTCTCCCACCAGTGCCAGAAGGTTACTGG
TCCCCCCACCAGCTCTTTCTGCTTCCCTCATGGCTCATTACCCAGCTCCTGACTTTCTCCCCTTGCTTTA
TTTCACCTGGGGTCTCAGAGCTGCAAGAGGGTTTCTCAAACCACTCAAGAGCCGCAGGCTTGTCTGGAGG
GCGAGAGGTCAAGTACTAGCAAGTGTTTCCATTTAGTTCCAGATACCAGCCTGACAGGTGGGTGCCTCTT
GATTAATTCCCAGCTCCCCTAAATGATCCCATGGTCATGTGCCGTGGTCCTGCTCAAGCCTAGGTAAAGT
TGGTGGGGGAGAAAGAGGAGAATATCTGAAGATATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTAA
>gga.U11.4.chr11_random
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CTTCCCAGGGCCTGGTGGGCACAAGGCTGCAGTGGTACCAGATGGGGCAGGGTCTGCCCAAAATGCTGTG
CCCTGCCCAGGTCCCCCTGCCCTGCCCTGCCCCGCGCCTCGCAGGATCCCAATAAAACTCCAGACTATTA
CTCACCACTGGGCTGTTCTAGACAAGCGTCTGCATTATTTTTGGCTGCCTTTGCCTTGGGGCTCCTGGAA
GCCAGGGATTCAGGGAAGCCACGGCAGAGCTCTGTTTAAACAAGTGCTCTTAATTGAGCTGCGAGGGGAG
AAGGAGATGCAGTGGAATTCTTGGTGGGGAGGGGAAGGGGTTGCGAGCCCCGTGCTGTGGTTCCAGCCCT
GGTCTGCGAGGAGCCCATCCTGGTCCCCCTTACCCCCTATTCCCACACTCTGTAGGCTCTGTACCACGGG
AAGTTCATTGACACCGGCTTCACACTGCCCTTCTACAAGCGGATGCTGAACAAGCGGCCCACACTGAAGG
ACCTGGAATCCATTGATCCAGAGTTCTACAACTCCATTGTCTGGACCAAGTGAGTGCCTCACGCTCCAGG
GCTGTGCGGGGTGGGGGTGGCAGTGCTCTTCCTGTGGCCCCTCACGTCCCGGTGCCCTCTACAGGGAGAA
CAGCCTGGAGGAGTGCGGCCTGGAGCTCTACTTCATCCAGGACATGGAGATTCTGGGCAAGGTGACCACC
CATGAGCTGAAGGAGGGCGGCGAGAGCATCCGAGTGACAGAGGAGAACAAGGAGGAGTACATCATGTGAG
TCCGGTCCTGATGCCCCATTGGGCACCTGGCTTCGGGGCAGCGCTGGGTGGGAGCGTGGGGCTGGGGACG
TGGCCCCTCCTTGGCTACGTGGCTTTGACAAGCCTGGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGAGGGGAGAGAGGGTGCAACAACTCTCCTCG
TCCCACGCTGCTTGCCGGCCTGTGTATTGCGGGGCTGCTGGGGCCACCGTGGGGCTGCTGGTGGTCACTC
GATGATGACTGCTTCATACTCAGAGCCTTCTGCTGCTTGTGGGCTGGGAAGCAGTGGGAGGGAATCGTGG
AATCGTGAAGGGTGAAAAAGATGGTGGGGAGAGCCCCGGTGTCACCCATGGACCTCTGCCTGCCTTCACA
GGCTGCTGACGGACTGGAGGTTCACACGGGGTGTGGAGGAGCAAACCAAGGCGTTCCTGGATGGCTTCAA
TGAAGTGGTGCCACTTGAATGGTTGCGGTACTTTGATGAGAAGGAGCTGGAGGTGAGCAGGCCCTGCCCC
AGGCAGGCCACTGTGGTGCCCATGGGGTGTGTGTGAAGCGTGAACGTGGGGCTGTATTTCCATCCCCCTG
ACTGTCCTCCATTCCCAGCTGATGCTGTGCGGCATGCAGGAGATTGACATGAACGATTGGCAGAAGAACA
CCATCTACCGGCACTACACCAAGAACAGCAAACAGATCCAGTGGTTCTGGCAGGTGAGCCCCAGAGCCTT
CATGTGCCACGCTCGGGGCCGGGCACTGCTTGAGGCTGTGGGGTGATGGGGATCCGCTTCCCTGTGCTTG
CAGGTGGTGAAGGAGATGGACAATGAGAAGAGGATCCGCCTGCTGCAGTTTGTGACTGGGACGTGCCGCC
TGCCTGTCGGGGGCTTCGCAGAGCTCATCGGTGTGTGGCCACGCTAAGGTTGGGCAGGGAGGGGGATGGT
GGCCATGCCTGGCTCTGGTTGCTGTGGACAAGTGTTCACGTTCCCATTCCAGTAGGGCAGTGATGCAGCT
GCACTGACATCTGAGTGAGGCAGTGTGCTTGGTTGGTGCTGTACTGAGACAAATTCCTTGGGTGTGAACT
GTGCCACTGCAGTTAGCTTTGTCTGCCCAGTTTGTAATCTCATTTTGAATGAGATTTGAGTGGTTTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>gga.U11.5.chr9
GTTGCATCTCAAGGGTCTATTCACTGTAATCACCTCTCGGCCAGAATTATCAGCGATCCTTATGGTGAAA
GACCTTATAGGTGAACACAAGTTCCGATCGAAGCAACCATTTTCTTCCACTGCAAAGTAAACTCTTTGTC
CCAGATGGTTTTTTATCTCATACTTGCTGCAGGTCTCTGTGCCAAGTATGGCTGATAAAGCAAAACAAGT
TCGATGTTACCTTAGCATAAGGTTAGATTAGAGATAGCCTCTGCCAAGACTCACCAAATTCTGCTCTGCA
TACGTTTACAGCTCCAGTCTGCTCTGTGGTATATACTCTAAAAACTACGAACAGAGACTGTTTAGAAATT
GTTTTTAAGTGGTGACATAAAGAAAATGTGTGAAAATAATGAAATAATAATGTCAAGTTTTATTTTGAAA
AAACATTTAGATCAAAGACTTTAATCTGCTGTAAACTGCTGTATACATCACAAAACAGAATTCATACACT
GAGTTTTGGTTTTGGCTTTTCTTACTTCATGCACTGTGAAAAATATTGATACGAGGTTATCCCACTTCAA
CGACACAACTTTCACTCAGAGGGGTGCCCAAGAATCAGCCAAAACCTCTTGAATAGCAGAAATACATCTG
ATTACACTGAATAGGATTGCATTTTAAAGTGTTGTAATTGTTGAACGTGAAACTTTGAAATTTTGAGGAA
CCATGTAAATCAAACTATTATGCCTTATTTAATGCTTTCAGACCTTCCTTACTTTATTCGCTTGTAGCAC
ATTCATCACTGTTTAAGACAATAACCATCTTTCCAATCTATAGAAAAATTAAATCTTTAGTAACTTTGAG
GGAAGGATTTTAGGGCTGGGGCACTGTAACTTTGCTCTTTACATCTCACCACACTAACACCATGCTGGAG
GCCTTGATGAAAGTCATCATGAAGCTGGGCTTGGAAGCCCTTTAGAGACAGCTGTGTACCAGCAGTGTTG
GAACACAACAAGACTTGCACCATACCTTCAAGGAGCTCCACCTGCTGATGAATAATGATCCGGTCAAGCT
GTTTCAAGAACAAAGAACAGAAATATAAGCTCGTGGGTCTTGGAAGGTCTGGGGCTGCTGGTGATCACCT
GTCTCTTTGCATTCCTTTCCTTCCTGAGTTCCCCAAAGAAACCCTCTCTGCTGTCAGTTAGTTACAAACA
CAGGAGAAAAGAGAAAAACTGCCATGACACCCAGCTTTTCTGTGCTTACCGTCCCTCCAACATACTCTGC
TTTAGAAAATAACCATTAGTATTGCAAAATCTTAATTTCAGCCTACCTCCCAGTGTTATGTTACTTTTTA
ATGCATGTTTTATATGACAATTTAGGCTCTGCTGGCTTCTTCTCCTTAAATTCCAGATGAGCATCAGACA
CCCGACACTGAATTTTGCCATTACTCACAGCTGAAGACAGAAAGCTCACGACAGACATCTGAGACCAGCA
CGTCACAGCTCTCCAGCGTATGTATATTTCACAATTGATAAATCTTGCCTGGTACACATTCAAACTGTTG
CAGCCATTTATCAGTTCCAGCCATCTCCTGCAGCTAGTTCAGACAGCAAAGAAAAGCTGGTAATAGAGAA
ACTTCCAGATCCCTTTCATTAATCTCTGAAATGTGCATGCCAGTAATTGAAATAATAAAAAATATTTGGA
CTTAAAAATCTTCTCCCAAGAAGCTTTGCTGTTTGTCATTTAGATTTCATGAGATATGAGAAGCCTTGGA
GCTCATGGGAAGTTAGTGCAGAGCTCTGCTGATGAAAAATGAATAAACTGGTTAAAGATGGCAGGGCTAT
TTTAATATTTTAGTATTGATTTTAATATGGATTTCTTTCCCCCACACAGGCTTTCACGGAGAAAGGAAAA
ATAATGAGCCTGAACTGCTAAAAACTTTGAGTGATTTTGCACTGCCTACCAGTTTGTTGTGAACAAAGCA
TAGGCAATGTTTAGCCAACAGGCAGCACCATTTGTTAGGCTTGCTTGTTTTGCCTTGTTGCTGCAAGGCA
GCCATTCTGATGCATCTTTCATTGAGGCACTTGTGGATTAAGGGAATTCTGTGCTTGCATTTGAAAGCAT
GGAAAGTCCTTTGCTTTACACGGGTCTCAGTCCTCTTGAGCTCTGATGTGCTAAAATTCCTTACATAAAA
CTAATTCTTAGCATTTAGTTTTGTGGGCAT
>gga.U11.6.chr26
GATAACAAATGTTCAACAAAGGTGATACAGTCATGAAGTCATGTAGAAACAGCTGTTGATGAAGAAATAC
TTGTACTGTAGGTTTATTTGTACATTTTGATATATAAAGTTGTCATTTTCTTTTCCATCTTTCAACCTTT
CCTTGTACAGAAAATAGCTATAAACAGTTTACTACCAAAAATTCTTATGCCATCTTGCTTCCTTACATGA
CAGAATGAAGCCAGGAGGAGGTTGGATTTTGCTTTTCTTCATTACTGATGTAACAGTCAGCAAAACGTAA
GGAAAATGCAAGTTTAGCAGATGTCTTTACAACTTCTCTTTCTTTCCTATGCCATTTCTAAACATGGATC
TACTTTTAAGTGAGGAAGTCTTTCTCCAGTCATCTTCCACTGACGCGATGACCACACCAGGAACTCTTCC
TTAAGTATTCCAGTGTAAGGCACTATTGCAGTGCAGAGCTGCAGCAGCTTCTTGGAACACCAAATTCAGC
TGTCATGGGAAGAACTTACAGCAGGATGCCCTGTACATGGCACGCTATTACCTGCCCACTGATTAAACAC
TGAGCTGTCAGAGAGAACAACCATAGCAAAGTAATTTCTTTTAGCTGACAGATGTTTTACCTGTTTGTAT
TGTAAGGTGGTTCAAACGTAACTTTAACTGTCAGCATTGGGTCAGTGTTCATCCTGTGCAGGTTGCTGTC
ACTGCATCCCGCAGCAGCAGCCAAAAGCACAATGAAATGCTGAGAAAAGTGCTCTTCAGCACATTCACAT
TAACGCCTCATCAGTACCATCTGAGCAGTGCTGTGAAGGCAGACACACACAGCCCAGCGTAGCTCCAGTG
CTCTCTGAAAATGAGGCGAACACCACCAGGACTGATTTGTTAGGTTATTGCACAGGACCGATTTTTGGAG
AAACAAAGCACCTGTAGCAACCACCTGTGTCGTTCCAGTACAAGCTCTAGCATGGCTTTTGTAGCAAGTG
ATGCTCCACAGTCTGTGCACACAGTTCCTGCTATCTTCAGTGCGAACTAGTACCAGTATTTGGCTCAATT
TATTCTGTTTCACATGTGCATGCCATAGGATGACTTCATAAATTGGACCAGTTTAGTCTATATGTTATGG
AACAGTAAAGCAGAGGGACAACTTTCAGTGCATACCTTGAGGCTCTGTTAAAGAAACTGCAGTGACAGAC
CTCTGTCGTGTGAGAGCAGCCCTGCTTTGTGTCCAAGCCCTCGGTCTGTGCTCTGTCCTTCTGCTGGAGA
GGGCTGTGCTGATGGTCAGTCAGTTCATGGTTTAATTTTCCATAACTGAAAAGAGATTCTGAGAATAAGT
ACTGATCTAAAAGTGGGACTGAAATGCTTTTCATCTACAGGTAAAGCTCATCCATCACCCATCCTGCACT
GAGCCCCAATTGTAAAGTGTGAATTCCCTTGGGGGGAATTAAGAGTGGCACAAAAGCAACATCCTGCCCT
CTCCTCCCTCCAGGATGTTTCTTCTTCATAGGGGAGTTATACTTACTCTGATATTGAATCCCAGCAGATC
ACTTATAACACCCGAGACAGCAGAGAGTATTACAACACGTGTTATGTTGTAGATTAATGGGTTCATGGTC
AGCCCGTACAGCCTGAATGGTGTGTCCAATTCCTGTCGTGGAGGAAAAAGGGAAAAGAACAAAACACAAA
TCCCACAGTAGAGTTAGTCCATAGCAGAAGTAATTTTCTGCCTTTTAACTTAACGTTGGCTCTCTGGCAC
ACTCTGCTAACTGTGCACTGCTTCTGTATCACACACAGAAATTCTATGCATTCCAAGCCTCTCTGCTCAA
AGATGTTTTCTAACAGCCATCCAGAATCTGAAAAGTCCCCTTTTTATACTGGCTGTGTGGCAAAAACTTA
ATGCAACAGATTATAGAATTATTATAGAATTATTCAACGCTATTATATGTGGCTTTTTATGTGTGGCTTT
GATACTGTGCTCTTTCTTTTCCAAATGCCTGATCTCCCACTGCCAACAAAAAGCTTCCACATTGGAGCTG
CTGAAGAGGAGGTTCAATTTAATGAGGCACTCTGCGCTCATCATACCAGCCTGTCCTCTCACTCATGTAA
ATCACAGTAAGCCACTGTTAATTGTTTGTAGCATAATTAGCTACGCCAGTCTTGTGTTACTACATCTAAT
TCCACTGCTATCAAAGCACAGAAAAAAATC
>gga.U11.7.chrE22C19W28
TGTTTTCCTGCCACTTTGCAGTGGGAGATGGCCCTGCTGTAGGCTTGGGGTGCTCTGGGTGCTGCCGTCT
GTGCAGTGCCATTCCTGTAGGGTGGGTGAGCGCCCCAAATCCAACCCTGGGACACCGAACGTCTCCGCGG
TGCTCCATCCTCACCTCTCCGTGCAGCACAGCTTCAGCTGTGTGCTCTGCTCCTGGAGCCAGCAATGGGC
TCAGGGCAAAGAGGGGCTCAGGGGAAGGTGGGGCTCAGAGCAAAGGGGGGCTTGGGGGAAGGTGGGGCTC
AGGGCAAAGAGGGGCTCGGCCAAGTGGGGCTGCTCTGTATCCCCTCCACGGCGCCTTTGGTCTCTCTCCA
AACCCATATTTCACTTAATCCTACTGAACCTTTTACATCTAGGATTAGTGAGCACACACCTGGCTGCCCA
GGCCCTGCACTGTTTGCATGCAAAGCCTGCAAACTGACCCCAAATCAGCTCCGTAAGGGACAGAAGTGCC
GCTCTGCGGTCACCATCCCTCTGCCCACCCTTGGGCACACGTGTGCCTCACCGCATCCCCTTTCTGTGGG
AGCATTCCTCTCCTTTTGGAGAGGCTCCCTGCAGCTTGAAGGCACTCATATGGATCCGAGAGCACCCCCT
GGGCTGGGGATGTGGCTGTCAGATCCTGCTGCCCCGTGGCGTGCAGGGAAGGGTTAACGCAGCGGCGGTG
CGTTGCCGTTTTTGTGCTTGTTGCCTTTGAATAGAACAGATTTTTTTCTTCTTCTTCTTCTTCTTTTTTT
TAATCTGGGGCTAATGTGCAATTCAAATGGTGCTTAGGCATCGCCCGATTGCTCCTTTTTAATAACAGCT
GGACTCTTTTGGGGGGGGGGGGGGAACCTGCCCGGTGCCAGGCGGTGTCAGCGCTGCCTCTGCTCCCACT
GTCAGCCCCACACATCCCAGTGTAAAAGCCCTCCTGCCCCAAGCAAGCCAGCTTCGTGATGGGGGGAGCA
TCCGCGAGCACCTGGAGATGCCATTGATCGAAAGCCAAGAGATGAAACTCCCCTTCCAGGGCCTTTTGCT
TCGTGCTGCACCTGAACCGCTTCTCCTTCGCTCCGCCGCGTGGCATTCCTGACATGTCAGTCCCACCTCT
GACGTCCAAGTGGAAGAATGCTTTTCAACTCCGCCGCTGGGAGCTGCAGGTGCACTCTTAGCACTTCCCT
GTGACTTTTCGGCCTTCCTCCCCCGCTGCTCCCATTTGGGGCTGAGCATAAAGCCGGGGCTGTGAAACCG
CGGCGCTCTGACGTGGGAGAACCTCCGTTCTGCCCTCCCCACCCGTGCCGGGGTCAGAGCACAGCGCTGT
GATTGCACCTTTCCCTGGGTAAAGCTGGAAGAGATGAAGGCGTTGAGCGTTGGTCCGTAGGAACAGCAGG
CATTGATCCGTGCTGCTCTCTTTCATTGCTATACTGTGTGCCTCTCTGGTGGGGAACCACTTTGGGTTCA
GCAACTGAAGCTCTCGAATTCTTCCACCTCCTATTAACAGAGCTCTTTGAAGAGCGGTTCAGCCCTAAGC
GTGTCCCAGGAAGCTACAGAAAGCTGTTTGCAGGTGGTGGAAGGCAGCAGGCAAAGCTTCCCCTCAACTT
CAGGTGCCTCTGTGGATCAGCTCCTTCCAGGGAGGGCAGCAGAGGGTGTGCAGAGCATCCCTGCCATCGG
CCACGTGTGTCTGTGGGATGCATGGAGGTGAGATGTAGGGGGGGGACACTCCAGAGCTGTGCTGGATCTG
TTTTCCGTGGGGTAAAGGTGTGCTTAAGGCTGCTGACGTGCACAGAGGCACTTCAGTCTGTGTAATTGGA
GTGGCTGTGGACGAGCTGTGCTTTTTAGGAGCCATCCCTGTGTGCCAAAAGGCATCAGGGCTCCTCTTGT
TTGGGTGTAAGGACACTGATAGGGGCTTTTGCTGCGTGTTCCCAATCCAAGTGGAGCTCTTTGGAGAGGA
GAAGGCTCTGCCCAGAGCACTGAGCTGAGCTCCAGCTGCACGATGTGGGGCTGGAGGTGGACGCTGCACT
GAGCCCGGATGGTGCTCAGGACCCCGGGGTGTCCTGTGGGCTGCAATGGGGATCCCACACCTTCCTGCCC
CACGTGGCTCCTGCGGGATGGAGCCTGCACAGAGAAACAAGCAGGAGAAATACATACATGGAAGCAAATC
TCAAGGAGGTGCTGGGTGACAGCTGCACAT
>gga.U11.8.chr27_random
TTGATAGTGTGCCTTTTTCTTGAGACTTTAAAGCCAGTACTTGGGAAAGCTGTAGGTGTCTGCAAACTGT
CAAGCACTGCGGTGATATCTGTAAACACTGATGTGAGATTTGTAAACATGAAGGTGGTTTTTGTAAACAG
TCACCAGGGAAGGCCGCGCGCAGCAGAGATGCAGGGATGCTGGCATGGGATGCAGGGAAAACCCTTCCTC
TCTGTCTCCTTTGCACCAGAGCTCATGTCCTCCCAAACTCTGCCTCCAGTCTTCTCCCAGCACGCATTCT
TCGCTCCTATATTCGTAATACAAACATCAGAGGCTGTAGGCACCTGTTCTCTGCAGTCTTTTCTATTTCT
GCAGTCAACAAATCAAATCCATCCCAGGACCAAAGGGCACCAAGTTTCCCATGCATGAGCTCCCTGCTGA
CCTGCCGGCCTACCAGCAGAGCTGCTGTGTGCTGGGGTGGGAGCGGTGATTCCTGCTTGACCCTTGCATA
ACCACCCTGTGCCCTGAGGCATGGGAACCAGTGCTGTTATCTCATCTCACATCTGAAATGACTCCTGTGC
TGCCTTTTGAAATACGTAGTGATGGAATGTTGGAAACTGAGGTCACAGAGGTTTTGGAAGGCCCCAGGCT
GCCCCAGAACTGTCCCTGTCCCCACAGCCTCAGTGTGTGCTGCTCCCTGGGGTTCTGATGCTCATCCAGT
GCTTTCTTTTCATCCTTCCCCTGCCAGGTCCTGGGAGCCACCGTTGACAATGCCAACCTCCTGCTGCAGA
TTGACAATGCCAGGCTGACAGCTGATGACTTCAGGACCAAGTAAGTCACATCTCCTGGAAAAAAGGAACA
AGGTCTGCAGAGGTTTTTGGTAAAAAGTGGGAGAAAATTCCCATCCCAGACCCAGAAAGGCAGCTTGGAA
ACAAAGCCTTCAAAATGAAGATGTGATTTCCAAAGCAGCCAGTTACCTAAATCCTGTAGGCACTCCATAA
CTTCACTGTTGCTTGTGTGAGCACTGGGCTTCTGCTGTGCTTTCACCTTCCATGCAAGCAGCTCAGCAAA
CACCAGAGCAGTACTAAGGCACAGTAATGTCAAGGCAAGGCTGTGCTGTGGGTTCAAGTGACACTGCTTT
GCCAGCTGTGACACTGTGCACAGTGCATGATATAAGCAGCAGCCAAGGGGCTCTGCCCAGACCAGATGTG
ATCTCAGCATCCTTGGTCACTGCTGTTCTGTCTCCAGGTTTGAGACGGAGCAGGCCCTGCGTCTGAGCGT
GGAGGCTGACATCAATGGGCTGCGCAGGGTGCTGGATGAGCTGACCCTGTCCAGGGCTGACCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGCGCAGTGCCGG
TACCCCCTGGGGCTGTAACGTGTACCCAGGGCAGAGGGGGTCAGGCATGGGGTGCAGAGCCGTCTGCAAT
TAGGGCTGTCGCTCCTGTGTGTATCATGCATTTCCTTTTCCCCAGGAAATGAACGCGCTGCGCGGACAGG
TGGGAGGAGAGATCAGCGTGGAGATGGACGCGGCTCCCGGCATTGACCTCACCAAGATCCTGGCTGAGAT
GCGGGAGCAGTACGAGAGCCTGGCGGAGAAGAACCGGCGGGATGCTGAGCAGTGGTTCTTCAGCAAGGTG
AGCTGGACGCCCGCAGCTGCGCGGCCACGGCTGTGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAAGGGGCAGCGAAGCTCTGTGTTCCCTGAGCCAATCCCCTGATGCTGGGCACGCACCAGGTGTCCC
TTTTGCTGCTGCTGCTGCACAGCGAGGGTCCCGCAGTGCTGCGCATCTCAGGACAGGGAGCAGGCATTGC
TGGGAATGGACTGCCATAGTGCCCTGATCC
>gga.U11.9.chr13_random
GATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTTGTTGAATGAAATCACTATGTTGGA
AAAGAAATATGACACATATGTATTAAATTAACTGCACAATTTTTATAACTTTTTATACCATTCAAAAGTT
TAAAAAAAAAAAAAAAAGAGAGACGACACAGGGATTCAATTGGACTCACATACTATATCGTATTTCAGTG
CCTGTGCTGCTGCAGATGCTACTTTGGTTGAGGTACAAACCCATGTATTTGCTGAAAATTGGAACTTACT
CAGAATATTATTCTCACCCTATTGTTGGAAGAGCTTACAAAAGGTTGTAAATGATGGTCCTTTCATTGGG
ATGACTTCATATGAGGGTCAAGAGGCTACAGAAGGTGTCATGGCAACTAGGAATTGTAACTGGAAATCAG
AAATAGCCTTGCTATTGGAAGTGGTAATTGCAAAATGATAGAAAATAGAAGTAAAAAGCATACAGAGCAG
CGCTGGCCAAAGATAAAGGCATACAGACTACGGCTTTGATTTGAAATTTAATACTTTTTGAGGGAAGAAG
ATAAGAAGATAATATTTCTTTGTCTCTATTGAGTCATGAAAAAGGGCAAAAAAAATGTTTAACTTGAGAA
ACATAGTCAAAACTTCAATAAAATTTTGTCAAATAATATTTTTTAAGGAAAAAGTAGTACTAGAAAAAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>hsa.U11.1.chr1
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTGTGTTGATAAAGATCTACTTCAGTCATCTGAGGTACAGTATTTCATTTTTCACATTAATGC
TATGCTGTACCTTATTCTACAACTCTTTTCACTCGATTTAAAAAAAAAAAATTCTAATACTCCTTCGAAG
TGCAGCATATAGCATGCCACAATATGAACACACCATGACAATCAGCTTATGCGTGACCTTGTGACCTTGT
GCTTCCACTGCACGCCTGCCTGGGCTGCTCCAAGGTGGTGGCTAGGGGTGGCACAAGTTACACATTTTCA
ATTTGGATAGGTTGTGATTCTTGTCTTCCCCAGTCAGATACCTACAGCCGCTGAGAGCCGGTATTCCAAC
GCCATGAGACGCCTTCTGTCGTGAGCAGTTGACAAGAAAGACCCAGCACTTACTGCAACCGGAAGGAGCG
GTTCCTCCCTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAA
GCCCTGAGTATATTTGCATATCAACTCACTACATTTTTTTCTTCTAACTAAAAAATCGAAAGGACAAATT
CCAGATTCTCCTTGTGAAGTCTTCCTTTCAGTTCAGAAGAAATGGAATTCGCTCTTCAACTTCAGGAAGT
TGAAATAAAGAGTTGCTTGGATTTTGTGTTCACCTTTACCAAAAAATGGATTTGGTAACACTGCCACCCT
GCTTTGGTGACAGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTCT
GCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGTTG
GTCCCGGCGCCCTTTCTTTACTGTTATATGTTAGGCGAAATATTACGCGTTTGGAGTAAGTGGTGCTTTT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
GCAGGTGACCTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATGAGGAAATTATTTGGCAACTGTGTTACAGTATAGCAGCAAA
TGGAATAGACCTAGTCCCTGACTTTAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGCAATGTTATTTTATGAAGCAGAGGAAATTGAAATTACCTTCACCAGGCCTTAGCAAACTTT
TTCTATACCTTATACCATACACAAAAGATTAATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACAATGGTTTACA
>hsa.U11.2.chr10
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCTTTAGAGATTCACATAGCTTTTCTTATACAGTAGATAAGAACTCAAGGTAACTAT
TTTGATGTTTTAATTAACCTATAATGTGAGTGGGAATATAATGTGAAGTCTCTTAGTCAAAATAATAAAA
ACCAAGATAGGATCTACAAGTTTAATGAAGAGAAAATAGGACCACATATTCTAATGTATTTCTGAATCTA
TAGTGGAAAGTTGTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAATTGTTTTAAGAGCT
ATATGACTCTGAGAAGCTTATGAAGTACTAATGAAGATTTGATGAACTCTCAAACAAATTTTTGTTTGCT
AGAAATATAATTCTTGGGGAAAAAAGGGCTTCTGCTGTGAGTGGCACACATAGGGCATCGTTTGCTCTTG
GTGCCAGAATCAACATCAAGAGATTTCAGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCATTGG
TCCTGTAGCCCTTACTTGTTGTGTAAATTAGACAGTTGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGACAGTCATGGCCTATTGGGTAAATCCAGGTTTCTGCTCCCTCTTAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAGTC
>hsa.U11.3.chr11
AGGTCTTGTATGTCCCACATTACTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAACCACACATGGTCTTGAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG
AAATAAAAAAAGGGAGCACTTATCAGAGAGCCTCATATTATCACTGGTCTACAGGATGAATCTGGGCCTT
TAAAAGGCAAATCGACTGAGGGAACAATTTTTTTAAACATAGATTTAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTACATTTAAGACGAGTTACTTTTGGAAGTGTTTAGGGGCATGGTATTGGGATAGGATGTAG
AAAACTGGTCATTTTGTATTTCTTATGTTGAGTGGTGCCTTGAGCAGTATTGGTTTGACTATTGTGCTTT
GTAACTTTCACATATCATATGTATCCTCTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAATAGGTTTGTGTTTGAAGGAAGGAAGAAAATAAGAGAGAGAGAACATGTACATGTGT
CCAAGATTGCAGTGAGTGAGCGGTAGACAAAGAAAGCCTGATTACAATCATTTTCCATCATTTCTCTATC
CCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTAACAGAAACAACATACAATGGAGAGAAAGAAGTCTGTGTCTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>hsa.U11.4.chr8
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTACAGTTTGAGGAG
ATCCCACCCCTCCGAGTCAGAGTGAGAAATCATAGCTGGCCCCCAATTGCACACAAGTTGGCAGTCATTG
CCTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATCCTGAACTCCTGGCCTGATACCACTTGCCCATCCAGGAGGAGTTCTTGA
TTAGCCTAAGGGATAGTTAACTAGAAGCTTCCAGGACACAGGACTAAGTTCAAGCTGAAGTTAAGGTGAT
TCTGTGAGAAGGCAAACACCTTACACAGTGTAGGTGAGGGGAGATTCACGCACCTGGAACCACCCAGGCT
GGCCGAATTAAGCCTAAGTCACCTCTGGTAAAGAGGGAAGGAGGGTCCATCCCTGGTTCAGTTACTGACA
CCATAGGTGTAGATCACAGGTGCCTATGTCCTGCTGCTCTCCACAGGGACACTTTTCCTTGGAAGAGATT
TACCAAATGCTAATTGAGTGTTTGTTAAATGTTTACTATGGGCCAAGCCCTGGGTTTTTCTCTATGCATT
AAAAGTGTGAGTAAAGGGGAAAAAAGGGCTTCTGTCATGAGTGGCACACATAGGACAACTCAATTTCTCT
TCATGCAGAATAAACATCAAGAGATTTTGGAAGCGTAATTTTTGGTAGTTGGGCAGCTGGTGATCACTGG
TGCCAGCACCCTTACTCCTTGTCTAAATCAGAGGTTGCAGCTCTGGTCATGTTATATTAGATGATTCCGC
ACTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTAAATAAAGGGCTCCTGATCTACTAG
GGAGGTGAAGGCTGTTGGTCATTTGCAGGTAGTTAAAATTATATAGTAGTTAGGAAGTAGATGGGGCCAT
TCCGTTGTGGGCACAGGGGCTGAACTCACATCACACCTCACTCATTAGTAGATGACTGTAGATATCAAAT
TGCTTTAAACCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGGTTTGAATGGAATTTCTGCGTTTCTCCTACTCCCCAGA
AAAAAGGGCCTGACCATGTCTCTCAGAGGCGGCCTAGAAGCTGGAGAACATGTCTCAGAACTAGTAACTT
CCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TTCCCCTCACCAATCTTTCTGTTTCTAGAACTTTTTCCTATTCTTTTCCTTGGGTTCGTCCCACCCAAGA
ATAAGTTGCTTTCACTCTTGCTATTTGCTACAGCAATGCCCATTCCCCTACCATTTCCACTAGTCTAAAA
TATGGATTTTACACAGTGGTTTAAAAAAAGAACGACGTTGCTAATACGTTGGTTTGGGCCTAGGGGGATC
TTCTGAGATCCTTCCGGGCAGAGGAAGAA
>hsa.U11.5.chr8
TTATTAATAAAGCAGTTTGATGCTGAAGGCTGGAATAACAGAAGTGACGGCAAGTGGGAAACTGGGCCAG
TTTTCTGATTTGTGGCTTCAGGGTGTGAGAAGGTTTCTATCACAAGCTTAGAGATGAACAAAATGTCAAA
CACATGTCTTCTTTCCCTTGGTTTAATATTTCTTGCCCCATGTTGAAATATAAGTATCCTTAGGAGCTGT
AGTTCTTTTAGACAAGCCTTAGTCACTATCACCTCAGACTTGACAGGATTCTCTTTCTAAGAGAAAAATT
ATGTGGCAGAGCAAGGAGAGTGTATTAGGACAGTGAGCAACTGAAAGAGGGAAAAGGAGGTATCATAATT
TGCGTTTTAGCACCAGTACTTCCCAGCCTCTTGTATCCTTACCTGTTGCCATCTAACCTAGTGGTTCTTC
CCTTAAAAGGGGTACAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAGGGCTTCTGTCATGAGTGGCCTATGTAGGGCAACCAGATTGCTCT
TCATGTGGAATTGACATCAAGAGCTTTCAGAAGTGTATTTTTTGGAAGTTGGGCAGCTGGTAATCATTGG
TCTTGGCATCCTTATTATTAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTATACTGT
GCTTATGACTTCAAGACCACTGTGTTCTCATGTCAAGTTTCACTGATGGTTCTGTCAGTAAAAATTTCAC
CTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGTGAAAACT
GAGGTTCCTTCAAAGATGATAACCTCAGGGATGTTTCTCTTGACAGACTCTAAACTAGATGGTTCTAAGA
GAATTACAGAATGATGAGTGTTCCTGCCCCTAACCTCTGGGTTTACTAAACAGAACATTTATTCTTGATC
CCTGCCTTTTAACTGAGCCACACAAGTCTAGGACCCATAGAAGAGGAAATTTATGGGCCTATGAATCTTC
ATTTGCTGTTCTGGAGAGCATAATTATGACCTTTGATTTAGACGTTCCCCAGAGATGCAGCTGAGCTGGT
GCTAATAGCCCTTAGCTATTCACTGGGACATCATTTCTTCCCATCAGGACATTAATTCCGAGGAATACTT
CGGTTCCTCAATTGGCAATTTCCATCACTCATTTCATGACTAGTAATTAATATTCATTAAGAACTCATGG
GGCATCTAATCCTCCCCTATATTGTTTAA
>hsa.U11.6.chr17
ATATATAAACTTATATAAACTGTATAAACCTCCAAGAGCAGTAAATGACATTTTGTTTCTTAGGATTGCT
GACAAACTCAGTTGAATTTAATAATTTCCAAATTATATAATTTTTGTCACTGGCTGCAGACTTTTGCTAC
ATAAAACGAGGAATCAGAAATTTAACCAGCTGAATTTTCTAAGTTCTTAGTTTTAAATGCAGAACAACTT
AACCTTCCCTTTGCTCCTTGCTTTTCCTGTTTTCCTATAGTCCACTCCAATAAAGTCAAAACATCATCAT
TTACAGACACTTCTTAGCAGGTCAGTAAACTTAGTATCTTTCCCAAATTTCTTGGAAGATTCACAAAACA
TCCTTCTTCCTCTTTATGGTTTCCTTTTTATTATTACCAATTTAAAAAACAATTAGGGATACTTATAAAA
TCAGTCTCCAGGATGCCTCCTTTTTTTCCTCCAAATATACTGATGTGCAGTGCCACCAAAAACCACCGCC
ACCTGTACTCTAATTTCAATTCGTAGCATCCAGAATAATAGCTCTGGAGCATCTAATCTTCTAAATAAAT
ATCCTGTTGCTATGTAAACACTTCCAAGTTAAATCATTTTTTAAAAGCACAAAGTTTTTAACGCCACCAA
AAACGTAAAAGACAAAGCTACAGAAACTTAACACTACCCAAAATATTTAGAGCTCCAGAACTCTTCGGCC
ATGAACTGATAATATACTACAGCTACAAAAAAAAGGTGGCGGGGGGGAGGATAGTGATAAAGAGCTAAAA
GCACCTTTGTGTGAAAAATAAATTATCAGAAGAGTATTTGCCAAACGCCTAGCTACTATCACTCTGATTA
GCACACAATTCGGTTAGGCATTTTCTGAGGAAAATTCCTATGCCCAAAGATCTTTAAATGAGTCACGATT
CTCATCTGAAAAAAAAAAAAATTAGAATGCTGACAACACTAAGGTAAATTCAACTTCATAAAAGCATTTC
TTAAAAACTGTGTTTCTAAAAAAGGGGGCTTCTGTCATGAGTGGCACACATTGGGCAACTCAACTGCTCT
TCATGAGGAATCAACATCAGGAGGTTTTGGAAGAATGATTTTTTTGGTAGTTGGGCAGCTTGTGAGAAAA
AAATGTTTTCAGGCAAATCCTCATCCCTCCTCGAAAAATAAAAAATGAAAAAATGGTTTTATAAAGCAAG
TAAGTCATATTCTAAACAACTATGTTCACAGGTTAGCTCATTAAAGTCAGTGAGATACGGTCATAAATTA
TATAAATACCTTTACATGTACAAAAACATTATCTTCAAATAACAGATAAATTAATCAACCTTCTAAGGCA
GGACCTCTACACTTATAACTCTACATTTACAAATGGAAAAATATTTTTTCCCTAAAGTGTTCTTACATTC
AGACTTCAGAAAAATTCAATGATCCAACAGTATTAAAGGAAACATGACACTATGGTCTTAAATAAATGTA
ACTTGAAGTTTATTTTATCTAAAATAAACTTATATTTAGAAAATAAACTGAAGAATAGATAAATGCATGA
ACTATAATCTATAAAAGGAAGACTGTGAGGAGCAGAGTGAATTTTTATTGAATTTCTACAGAGATGTTTC
CCAAATTAAATATGTAATCGCTATTTGTGCATGTAAACACACACACACACATCTCCAATAAAACTCCACT
GACTTGTAACAGGCAACTGTAATAAAGTGATTAAAAGAGAGTGACATAGCAATATAAAGAGCAAAAACTA
TGTGAAAGTCAATGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGACTTATCAGACTTGAATGATAT
CTAATTTCATGCTCTTTGCCCCATACCCTCCTACAACTACTGTATGATACATAATTCTTTTTAATAAATT
AAACATAAGTTTATCTGATAATTCTGAAATATCCTTAGAATAAAAGTGGAGATTCTAGAAATAAGTGTGC
CCCAACAGTGGAGAAATCAGTCCTTTGATGATTTCAAGCCTTTATTTTTATTTTATTTATTTTGATATGG
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
>hsa.U11.7.chr14
TTGAGTAGCTCACAAGCTACTTCTTAAAGGAAAAGATAAGCCCTGAGGGCTTTTACTCACATCTGTACAG
GAGGGAACTCCTCTCTACAAAAAGAATTCAGTCTGACTCATGTCATAACAGCATGTGAAACATCTCATCT
AAGACAATAAAAGCACTCAATTAGATGGTGCTGATTAGGTGTGATATATGCATTAATCATTGCCTAGAAC
TTATAGTTGTCTCTAGTTTCAACTCCATTTTATAGAAGAGGATGCATAGGCACTAAAGTACTGCAACTAA
AAAGAGGGCGAATCTTGCATTTGAACCTTGGCATTTTGTCTCTACAGCTGCACTTTATACTGCTACAATA
AACCTTTGAGAGCTAGACATTTTTAATTCCTAACACAGAACTTATATGCAAACCGTGTTTTATTAGTGAT
ATAAACACATTCTCCTATCTAGTTTCCCTTCAAAAGCTCTAAGTGGTACATATCAAAAGAAAATAGAATA
TTTAGAGGGGTGTATGAGTAGTTTGTCTGATAGACTAAGAACTACCTCATAGCAAATTAAACCAGAAAGC
TGTAAACTTGGACCACATTCACTAAGCCTCCCACGATAACAGATTTACTAAGTAAATGGTTTACAAATTA
TTTACAAAAAAAAAGACAAGTAAAAAATATTGCAAATAATTTACAAGTACTAGAATTTTGATGTGATGGC
CTTGATTTTTATCTAGAGTCTATATAGGACAAACCATATAAAACTATCATTGGAAACCATCTACATATTT
TGTTCAATGTCCCTTACACATAATTTTTTCCTTTGAAAAAGTAATCCACATCTTTTACAAGATTATAGGA
GTTATAAAATCCATTCTGTTTACCTTGTTACTGGCTATCAGGAATTTCTGTGTGGGTTTAATCACAGTTA
ATATATTTGCTCCTGTAATCATATATTTTCGACTTCCAAAAAAAAAAAAGCATTTTTTTTCTCTATTCTA
AACGGTTTTTTGAAAAAAAAAAAAAAAGCTGCTGTTGTGAGTGATACATGCAGGGCAACTTGATTGCTCT
TAGTGCAGAATTGACATCAAGGAATTTTGGAAGTATAATTTTTTGGCAGGTGGATAGCTGGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTGATTGTTGGTCCTGGTGCCCTTACTC
ATAAAATAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTGTGTACACATCTTTTTAAATAAGTT
TTCCTCAATCCATTCTGAAAGTAAATAGGTGATTTTTTAAAGCTTTACAAAAAAAATCTTTCTCAAAATT
AAGGTAAAAAAACTTATATTGTTTATCTGGAGGCTAATGCTGGAGTTATTTTTTAAAAAACCAGAAACAC
TACTTCAAAGAGGATTTTTAATAATAAGTTTTAAATTTAATTTACTATCATTATATACACAAAACTGGAA
GAAATGGGACTAACGACCTCTAGACTTATTACTTCAGCAAACCACCTTCCACACCCTAACAAAGCAGAAA
GTAGTTATGCTCTGCTCTTTGGACCTCAAGTAAACTTCTACCACTTCAATTTGACATCTGAGTGTCCTAC
AGGCTGGAGAGTCTCGACAGGTCTTGACTGTATACTAGAAATGCCTCACCCACTCTACCTGGTGGTTTGG
AGCTTGTCCCTGTCCTGTGAATTAACCTAAAAGGATGTATGCCCTGGCTCATCTTAAGTAATGGCGATTT
TTATTTCTCTTTATGTATTTATGTGAATGTATTCAAGGACAGGGAAAGGAATTATCTTTAGTTTCATTGA
CCCTTGTCCTTTGGAAGATAAATAAGAATT
>hsa.U11.8.chr21
GTCAATGAAACACTCCGGAGATATTCAGCACCATTCTTCAAATTGAATGTAAATGGGACAGGTTTGTTTA
TTGTAACTTGCTATTTTAAAAAAAATTATATTTTGAGATCTATTTATACTAATACGTATAAATCTATTTC
AGCCTCTGCTGTGTTTTATCTTATCTCATTTTTATTTTAATATCTAATCTCCGTTTTTAGATCCTACCCT
GATTTGTGCTCAGGTACTGTCATATTATATAAAACTCTTGTTTTGTGGAAGAAAGGGATGGCCACAGGAT
TATGAAACCTGGCCTAGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTGGTGCTGTCAGCATTGCTTAGGTTGATAGGTGTTTATACTGTGCGCAGGGACAGAGTACTTCCAGT
ATCCTTTGAAAAGACGACATCTGATTTATGGAAACATTACTTATCACGGTGTCATGTTGTAGTAAACAAG
ATTGTGGAAAGGTGTCAGCAAGGAAAATTAATCTCACTCAAGCTAAAAATAGGTACTCTTGACAATTATG
TAGAAAATGCATGCTCATAAAACGTATCATCATATGCAGCATCATTGCTTTTAGAACATTTTTCTTGTCT
TAGACAGGCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTCAAAGTTCTTTAAGCAATGCCATCAGAAACCTG
AACCCAAATGTATTTAACATATAACCCTTTACTGTGGGGCTCTGAGCAGTCATTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCATTTATTCATTGCTTATAATTTTCAAAAGTGAAAGTC
TAGAAAGTCATAACAAGAATAATATATTTGATGAGAAAATTTGTTGTTTTCTGTGACATGCAAAACGAAA
CTATAAAATCAACCCCCCAAATTTTAGACAAATTACTTATAAACATAATCATTAGGCCTATTTCAAAGAA
TACAGAAAACATTATATCTAATTTACAACAATAAGTGGGCATAGCAAAAATCTTGATGTAATTATTCAGA
GACATAATATACTCTGACTATACCAAGCATATGATAAGAATATCAAGAAACAAGATGTAGTAGGTCTGGA
GTAGGTCCTAAACATCTATTTATTAATAAA
>hsa.U11.9.chr5_random
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>mdo.U11.1.scaffold_15164
TTATAAATCATATGTAATATAAGGAATTATATATTATTTATGTTATTCAAATTAACTAAAGACTGTGAGT
TTAAAAAACAGTGATAGCTGGATCGGGCATCTCCCTCCCTGCCCCCATCTTCCCACTCTTCCTTCTTTTG
GACCCTCCACTGATAGTGTTTCAAATATTCTCTAACACATCTTTTGGCAGAGTTGCGCCCCAGTTATCAG
TCATAGCCTGGTTTCAAGGCTTGGACACATTGATGGGTAGGAACTAAGAAGAAGCGGAAGGACTTCGCTG
GGAGCGCAGGGATTCGGGCAGCCAGTATTAAGCGTTCATTATATGTCACACATGGCGCTAGGCGCAGAGG
ATTCAAAGAAACAATTATCTACCTGAAAACTATAAGCAAGATAAATTGGAGAAAATCCGGAGAGAGAAGC
AATTGCTGCATGAAAGCTACAGACAGCATAAATTGGAGACAGTCAACCGAGGGGTGGCACGCGCTAGCAT
GAAGGGAGATTGGGAAGAGCTTCTGGCAGAAGAGAGGGTGTTAGCCGGGGGGTTGGAAGAACGCCCGAAG
GCGGGTGGGGGCAGGAGACCAAGATTCAAACCCGTAGACCTGCGGTGGTTGACTTAGTGCATGACATCTC
ACCCACGGAGCACCTTCCCGAGCTCGCGGAAAAGCCAGGGGCGTTTGGATCCGGAGCTGTCAAGGGAGAC
TCCGCCCCTGAACAAGGCACTCTCCGCCCATACTGCCGTCAGCCCTTGACTTCCCAGAAGAATCAGCGCG
CTTATTTGCATACAAGACCTTAGCTTTCAAAGTAGGTGGAGGGGAACTAGATTCCAAGCCTCCTCCCAAC
TGAAGGCACCAAAAATTAAAAAACAAGCAGAAAATAATAATATGTTCCATAGACTCAGATGTGATGGAAA
AACAATTCGAAGGTGGATTCACCCTTACTTAAGAATGTGTCACCGTAAGTCACTCCTATAGTCTTGAGAG
AGCTCGCGTTAAAAAGGGCTTCTGTCGTGCATGGCACACGTCGAGCGGCGGGGGTATCCTCAGCCGTTTT
TCGTGCGGAATCGACATCAAGAGATTTCGGAAGCACAATTTTTGTTAACTGGGCAGCTGGTGATCGTTGG
TCCTAGCGCCCTTTCTATGTTTTTAAAAAAAAAGTTCAAATGTCTGTTAGGGAAATCAAATCGCAAGTTC
TTTAGTAGTATCACTTTGGAGTCTCATCTTCACCTTTACTACATGGTCCATTGATTTCATTCTTTTTCAT
GTTTCTATGGAATATAAGTCTTGAGATTGTGTCTCACTAATTATATTTATGTATATCAGTTGTGTGGTCT
TGGCCAATTAACTTCAATCCTGAATTCGTTAGAGGGATTCAGTAAAGTTTTAAGTTTCGAAGAAGGGGGT
TAACTCGCTTTGAAATTCCTAAACCGATGAAATCAGATCCAATTTCCTATTTCAATTATTATTTATTGTC
GAGTTGCTTTAAAAAAAACATTTTTTGTAACTAAATTTTATTTTAACAAGCATTTTTTTCTTCCTCTCCT
ACTATCCACTTCCTGTTGAGTAAAAAAACAAAAAAGAGGAAACCCTTATAAAAATGAACATAAGCAAGCA
AAATTGGTACATTAGCCATATTGAATAATGTAGTTCACTCTACATGCCGAGTTCATCATTTCTCTATCAA
GACATGGATGATATGATCACAACTAGTAATTTAAAAAAATAATTGATAATTGCAGCTTGATTAGAATTCT
TCAAAGTTTTTCGATTTTTTTTTTTCAGCAAAAACAAGCCTTCTCAGTAGTCGGCAAGCTCTGTGCTAAG
CTTCTACTTGGCATAGAGATGTCAGGGCTCCCTCTAATCCACAGGGTGGTGCTGCTAAGCAATGAAATAT
GCAAAGAGAAGGTGAAGAACCTTGAAGGTGAGCCTTGACTTCTGGAATAAAAATGTTTCTTCTCTAGAGT
TTATCAAACTGTGATTCAAATAGAACAAATGGTTTTCTCCTATTTAAAAGATGAGGAAATTGAGTCATCA
AATTCTAGAAGGGCAAGAGAATTCCCGATATCTACTAGTTTGAATCAATTATTTAACAAACTTTGATTAA
GAACCTAACACACTAGTGCCTGGGAAAACAAAGACAAAAGAAAAAAAGTTCCTGCTTTGAAACAATTTAT
AATCTAGTCCAAGAAATAACTTGTGCAAT
>mdo.U11.2.scaffold_15164
ATCATATGTAATATAAGGAATTATATATTATTTATGTTATTCAAATTAACTAAAGACTGTGAGTTTAAAA
AACAGTGATAGCTGGATCGGGCATCTCCCTCCCTGCCCCCATCTTCCCACTCTTCCTTCTTTTGGACCCT
CCACTGATAGTGTTTCAAATATTCTCTAACACATCTTTTGGCAGAGTTGCGCCCCAGTTATCAGTCATAG
CCTGGTTTCAAGGCTTGGACACATTGATGGGTAGGAACTAAGAAGAAGCGGAAGGACTTCGCTGGGAGCG
CAGGGATTCGGGCAGCCAGTATTAAGCGTTCATTATATGTCACACATGGCGCTAGGCGCAGAGGATTCAA
AGAAACAATTATCTACCTGAAAACTATAAGCAAGATAAATTGGAGAAAATCCGGAGAGAGAAGCAATTGC
TGCATGAAAGCTACAGACAGCATAAATTGGAGACAGTCAACCGAGGGGTGGCACGCGCTAGCATGAAGGG
AGATTGGGAAGAGCTTCTGGCAGAAGAGAGGGTGTTAGCCGGGGGGTTGGAAGAACGCCCGAAGGCGGGT
GGGGGCAGGAGACCAAGATTCAAACCCGTAGACCTGCGGTGGTTGACTTAGTGCATGACATCTCACCCAC
GGAGCACCTTCCCGAGCTCGCGGAAAAGCCAGGGGCGTTTGGATCCGGAGCTGTCAAGGGAGACTCCGCC
CCTGAACAAGGCACTCTCCGCCCATACTGCCGTCAGCCCTTGACTTCCCAGAAGAATCAGCGCGCTTATT
TGCATACAAGACCTTAGCTTTCAAAGTAGGTGGAGGGGAACTAGATTCCAAGCCTCCTCCCAACTGAAGG
CACCAAAAATTAAAAAACAAGCAGAAAATAATAATATGTTCCATAGACTCAGATGTGATGGAAAAACAAT
TCGAAGGTGGATTCACCCTTACTTAAGAATGTGTCACCGTAAGTCACTCCTATAGTCTTGAGAGAGCTCG
CGTTAAAAAGGGCTTCTGTCGTGCATGGCACACGTCGAGCGGCGGGGGTATCCTCAGCCGTTTTTCGTGC
GGAATCGACATCAAGAGATTTCGGAAGCACAATTTTTGTTAACTGGGCAGCTGGTGATCGTTGGTCCTAG
CGCCCTTTCTATGTTTTTAAAAAAAAAGTTCAAATGTCTGTTAGGGAAATCAAATCGCAAGTTCTTTAGT
AGTATCACTTTGGAGTCTCATCTTCACCTTTACTACATGGTCCATTGATTTCATTCTTTTTCATGTTTCT
ATGGAATATAAGTCTTGAGATTGTGTCTCACTAATTATATTTATGTATATCAGTTGTGTGGTCTTGGCCA
ATTAACTTCAATCCTGAATTCGTTAGAGGGATTCAGTAAAGTTTTAAGTTTCGAAGAAGGGGGTTAACTC
GCTTTGAAATTCCTAAACCGATGAAATCAGATCCAATTTCCTATTTCAATTATTATTTATTGTCGAGTTG
CTTTAAAAAAAACATTTTTTGTAACTAAATTTTATTTTAACAAGCATTTTTTTCTTCCTCTCCTACTATC
CACTTCCTGTTGAGTAAAAAAACAAAAAAGAGGAAACCCTTATAAAAATGAACATAAGCAAGCAAAATTG
GTACATTAGCCATATTGAATAATGTAGTTCACTCTACATGCCGAGTTCATCATTTCTCTATCAAGACATG
GATGATATGATCACAACTAGTAATTTAAAAAAATAATTGATAATTGCAGCTTGATTAGAATTCTTCAAAG
TTTTTCGATTTTTTTTTTTCAGCAAAAACAAGCCTTCTCAGTAGTCGGCAAGCTCTGTGCTAAGCTTCTA
CTTGGCATAGAGATGTCAGGGCTCCCTCTAATCCACAGGGTGGTGCTGCTAAGCAATGAAATATGCAAAG
AGAAGGTGAAGAACCTTGAAGGTGAGCCTTGACTTCTGGAATAAAAATGTTTCTTCTCTAGAGTTTATCA
AACTGTGATTCAAATAGAACAAATGGTTTTCTCCTATTTAAAAGATGAGGAAATTGAGTCATCAAATTCT
AGAAGGGCAAGAGAATTCCCGATATCTACTAGTTTGAATCAATTATTTAACAAACTTTGATTAAGAACCT
AACACACTAGTGCCTGGGAAAACAAAGACAAAAGAAAAAAAGTTCCTGCTTTGAAACAATTTATAATCTA
GTCCAAGAAATAACTTGTGCAATACAAACA
>mdo.U11.3.scaffold_13440
AATAAATTATTTCCTTCCTCTAGTTTATTTATCATTTCAATGGTATTAGTGAAGTGAGTCAATTGTATAT
CTTCCATCCTTCATTCTTGCTACATGACCATTTTATCTCTTTTTCCAGTCATTTACACTCTTGTTTATAT
TTTTTAGACCACTTACCCTGGGGCAAGGTGTTGGTGATATTGACAGACATTTTTCTAATGATGTTTTTTC
ATTATGCTTTCAACTTTGAGTTTTTTGATATTTTAATGTTCTATAATTTCATGGTTCCCAGGTCTGTGAC
TTCACCAGCAGTACAGTGATGCTAAAAATATGGGCTTTGATGGTAAGGGCACCTAGGAATCATCAAACTC
TGTTTTTAATTCCCCACAAACAATCCAGTGGCTTTCTTTAATTCTAGGAAGACTGGTAGCACCATTTATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTAACCAGTC
TATTTGGGTTGCCTTTCTAAGATATATATTCTGCTTGACAATACACTTTCTTTCAACAGTATTTTTATAA
TTTGGCTACTCTTAATTTTTTATCCATTTTGTATTTTTAGTGTGAATATTCAATCCAATCTTTTTCAAAT
GACTATAGATTTGTTGAAGACAATTCCACCACATTATCTATGAAACTCAGCTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTACTGGAAAATGGGGATGGAGAAAGGGTAGCCATATTG
TTCCATGGCAAGGAAACTGTGGCAAATTGTTTTAAGGCCTGAATTCCATCCAGAGAAAGCAAAAAGGGCT
TCTATCAGATTGGGGAAAGCCAGGGAAGAAGTCTAAGTTTCAGATTATGTGAAGATGGATAATGTTTCAT
GGTGTAAAGAGTAAGGGCGGTGATAAGGAAATTCTATTTGAATAAATACATCCCAGGGCACCTTCTAGGA
CACCAAAATCCTCAAATATAGGAAAGGCAATAAGAAGTCAGAAATGATAGCTTTCCCTTTAAGAATCACC
ATCCTAATGTTAGTTCCTACATCAAATGCCTAAAACATCTAATTATCAAATAAAGCTGGCTTTCTAATGA
GCAAATTACAGTCAGCCAGTGTCATGATAGTTGGAATAGAAGTGATACAGTTTTTACTTTTAGAAAATAT
GTTTTGAGCAAGATGACTGAAAGGTTTAATTCTCTTGTTGAGATTCATTTGCAAAGATGTTTAAAATTAC
CCGGCATGATAAAAATCAAGCTATATTTATTTTATAATGAAGTTCCTTATATCTAGGCAACTTTAAGATG
AATATTTTGATATCATCTATGCTCACAACAAAGCAATCTGACTGTATTTTAAAAAATTCTGATCCAGTTG
AAATTGGTTCTTTACCAACTCCACTAAAGGCCAAGGCCATGGCCCTCATCAGCTAGGATAAATCAGACAA
TAAGCATGTTTCTCTAACTCTTCAGTTGGTTCAGGATCTTTATAACATCATTGCCCCAGTTTGAGCAGAA
AAACAAATTCCAAAATTATAGGGTCTCCTGGATTTCTTCACCCAGTTCTGTCTTCAAATGGAAGTAAATT
TATGCATTTGCTGTGTAACTGAGACCCACATTAATAAAGTGTTTACTCAATGTTTCCAAGAAGTAAAAAG
GAGTTATATGGTGATTACCATGGCAACTGTTGGCTCAGGAATAAATTTAAGCTCAATAGCCTTTAATTCT
TCTCAAATTATCCATTTGGATTTTGTTCTAATCTTATTTCATTCCGGAATGACATAGCTATAGACGAGAA
TCTGATTTCCTTGGCACAAAATAATTGACTTAAAATGCCAGTATTACTAAAGGGTTGAGACAGTGTATAG
TCCATTTCAAGTGGATGCTGGCTTTAGAAG
>lcl|chr2:31329164-31331363
CAGTAAAGAGAAGGAGGACAAGCCACCAGACACCTGCTGTACACAGTGGCTGTGGAGGCCACTTGTGTAT
TGGTCAAGATGTATCTCCCACCCTCGCTCTGGTTTTTCTTACTCCAGTGACTCTGAGGGTCTCACTCCAG
CCCAGGAACCCTCAGCATCTTGGTATAGCTCAGAAAGCAAAAATCATTAGGCAAACAAGAAGCAAGATGA
CCTACGGGACCTGGGACGCAGAAGCTCAGATCTGCAAGGTGTGTGCTGGGTCATGAGCCACATTTGCAGA
AGCTCTTGAGGCTTCCCCGAGTCTTAAGGTCATATGCACCTGCTTAGGTCACAACAACCTTGACACCATT
TTCTCTCCGACCCAAGCTTGGCCCCACATGCTAGGACTGGGTACCTGTTGGTGACAGGCAGTAGAGGGTT
GGCATCCTTGGTCCAGGTGAGCAGTGGAGTTGGGGAGCCTTGGGCCTCACAGTCCAGGGTCACCTCTTCA
CCAGCCTTGACTGTCACTCTCAGAGGGACATCCACAGCCTGGGAGCCATTCATCTTGATCATGGGCTTGG
CTGTTGGGAGAAGTTAACACAGCAGGAGCAAAAGCAAGCAGCTAGCGGATGGTTCCCTCGGATAGCAGAG
GGGAAGTCACTTTTACCTTGGGAGAGGTTCCAAGAGCACGTGAGGCCAAGGGTCATTACAATTGAAAGCA
CAGGTTTGGTCATTCAGCCCGCCCCTTTGACTGTCCAACATTCTGCTCTGCCATCTCCCATTGGTCAACC
TTTTCATTTCCCGTTATAGTTGCCACAGAATGCAACAGGAACACTCTCTTGTTTCTTCGCACCCCAGAAG
GGGATTTGGGATAATTTATGCACATCATTTCTCTGTTAGGCCAAGGACTCCTCATGGAAGAAGCTACCTC
AGTACTGACTCCCACCCCCAAGGCTTGCCCAGTGTGCATTTGCTAACAGAATTTAGTCAGAAACAAGTCA
CATGGGGGGGGGGCATCTGAACACTACCATGACTTCCTATGTATGCCACATCCATACTTCTGACCATAAA
TTCCCCTCATCATTATTCTCTTTGAGTTTAAGCCCCGTGGAGTTTAGCCTGGAGTTAAACTCTACGGTAG
TCAAAGATGACCGTGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGTTTTGCTTTTTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTTGTAACATAAGTATATAACAGA
AAACAACCAGCATTGGCTCACCGTTCCAGACCCACTCCCTGAAGGCCCAGCCTGAGGGAATGGTTGGGAA
TGACCATAACTTCCCCTCATCATTATTCTTGTCCAGGCAGCACTTTGAGTTTGCAAGAACTGGGTCCCAA
CTGACCAGTACACAATTGATTACTTAATCTCAGTAATGATAGGTGCTACTAAGGGGATGTCCCACCCAGA
GTTTACAACAAAGTGGTTTGATTCAGCTTGGGGTCTGACACATGAGAGAAGCCGGTTGGTCCCAGAGGAA
GAAGTGCATCGAGGAAACCTCATGTCTGAAGGCCCCAAGGGAGGTTAGAATATCAAAGAAACCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGATGAGGGTGTTGCAAGGC
TGGTGGATCCTGTGTCTGCTCAGGGCTTGGTACTGTGAGCCAGCTGGGCATAGAGGCTGAGTGAGCCCTT
GTGGTCCCCCTCCCACTGATCCCTCTCCCCTCAGGACCTGTTACACTCACTATTAACAGACAGCCACATC
TCCTGGCTGGAGAAGCCCACACTGTTGGTGGCTGTGCACACATAGGCACCTGCATCCTGCGGGGATGGCT
GGACAATGACCAGGGTACCATTTCTGCTCACACTGTAGTGACCGCTGGTAGTCAAGGCGTTGGTTTCCTA
GGACAGAGCCACAGTGACAACATCGGAGCT
>mmu.U11.1.chr4
AGGCCGACCAGAAGACAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTTTAATTAATTAAT
TTATTTATTTTGGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGTTTATTTTTAAAACTATCTGATTTCATTGAAATTCAGAATAAATCGCCCCGCCAT
ATGAACACAGAGCGCGTGTCAGCTTTTTTTAATCCCTCCCCATCACCTAGAATCTAGGTCTTTGATGATA
AATTTACTCCGTTCTTTGCTTTTACAGACCGTCTCCTGTGTGTCCCTGTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTAGAACATAACGTCCAAGTTGGAGGCTACAAGTGGCACTAAATTACACATTATCAG
TTTTGACAGGTTGGGGCACCGTGTAACCCTAGTAACTTAGCGAAAGGCTCCTCGAACCCAACATCCCACC
TCTAGCTGGGAGCAGCTGTTTTGCACCAGCGCCGCCTACCTCTCCCTCCGCGTCGGCCAGAGCATTCCCA
GCAAGCACTGCTCTGATTTGCATATTGACTCACGGACTTTCCTTTACTGCTATACAAAAAACGACACAAC
AGTTCTCTTTGTGAAGAGCTTTCCCTCAGCCCGAGAAGAATCGATAGTTTGCCTTTTAGCTTCGACAATA
TACAGTTGAAAGTTGGTTAGACTTTATTTTCACCTTTACCGTAAGATGGGTGGACCGACAATGCCACTGT
GCTTCCGAACGCGCTCGAGCAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTGT
GCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTAATTGGGCAGCTGGTGATCGTTG
GTCCCGGCGCCCTTGAATTTGTTAAATTACAGGAGGAAGCTTTTTTAGTTCATTTTACAAATACTTTCTT
GTTAGGTAGATAATACCTTCTAAGGTTATTATCTGGATCTTCTAAGTCTTTTTATCGCTAGCAAGTCTAA
GTTTCTGGACTTTGGAATTAGAAGTTAATGTCGTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAACAAAACAAACAAAAAAAGAGTAGCTGAGTGCTCTG
AGTTGTCTCTCCAGCCCCTTAGCTATTTATTTTCATTTAAATTATTTTTGTTTTATTCGCTTGTGTGCCT
GAGTTTGAATTTCCCGGGATTAACAGTTGAAGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCAGTTGAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTGACTGCTAAGAGGAGT
GGGTATGGCTCTGCTTCACAGGTTAGAAAATTGAGGGTTACATTGTATTATGCAGGCAAAAGGAATATCC
CACTTCCAAATGCCTCCCTGGAAGAGTAAGGGAATCATAAAACTTGACTGAAATTTCCTCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCATGACTT
>mmu.U11.2.chrX
TGAGGGTTGGTTTATTAAATGTCAAGGGAAGGTGTTAGGGTGAATTTCGACATAGGGTATAGTTGTTTCC
CAGAAAGACAGATGTTCCAGGAACCTTGTCTTTTCAGTAGATAACCCATGTTTTGACCCATACAGAAGCC
AGGAAAATAGAGACAATCCCAAGAGACCAGCACGTACGAGGACAAAGACAAGATCTTAGTGTCATCATCC
TGACCTTTTAGAGGGTATTGCCATTGTCTCGGAGTTCTAATGATGCAAGTTACAAAAGAGTTTTAACTTT
ACCATCCAACAAGATAGCTACAAGTGGTTTCATTTAGATTTTAAAAATCTCCANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCCAGCTTCTCAGTTGCACTGGA
AACATTTTAATACGCAGTGGTTATATGGGCTCACTTGGCTATTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATCTAAACAGTCAAAAT
AGTCAACTCAGGACCAAGTCTCTGCATCTACATGAAGCATGATTTTGTTTTTCTCACTTCTGTTGTCTCT
TTGCACCGGTGTGTACAAATGGGTAGGAAGGCAAGTAAAACAACTTAGCAGATGAACCCTCTTATGATAA
AAAGTAAGAATTCATTCGAAAAAAAGGGCTTCTGTCATGAGTGGCATATGCAGGGCAACTTGATTGCTCT
AAGTGCAGAATTGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGTTG
GTCCCAAAGCCTGTGTACTTGTTAAAATAAAGGCTTAAAAAAAGAATTCATTCAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATGAAAA
TAGACCTCACAAGTATCTGTATGAGGGCGGAAAAACAAACTGATAAATGCAATCAATGATGCAAAAAGAA
AGCAATGGCTATAGTTTGAACGTGTTGGAAACATGATAACATGATATCGGATTTTATAGTTTTTTTTTTG
TTTGGTTGGTTGGGTTGTTGTTGTTGTTGCTTGGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNACATTACTCCATTTTCCCTCTGTAAGGGTAAAAGTCTAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>mmu.U11.3.chr18
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGAAGAAGAAGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAGGTTACAAGATTTTCTTAAAACCCAGAAA
GAAAAAAATACTTCCTTCTGGAAATCATGGCGATTTGTATATGTTCTGGTGCTGTTGCTTTTCTTAAAAC
ATCTTCCAGCTTGCTATATTATATGACTTCTCAAGTTAAAAGGATGGGATGCAAGTTGTATACCAGGTCT
TGATTTGAGTAATGACGTTATTACTTAGCCAAGTAGATACTATAGTAAGATTGTGTGTGTGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTCTGTCGTGAGCGGCACATGCAGGGCAACTCGATTGTTCT
GCGTGCCGAATCGACATCAAGAGATTTCTGAAGCATAATTTTTTGGTATTTGGGCAGCACAAAACTCAAG
CTCCTGAGAGACCTCCTAAAAGTGCCAGGCACACAAATGATACTATCACATACACACATGCAGGCAAAAG
ACTCATATACATTTAAAAATTGAAAAGCAGTGGTTTTTTTTTTAAATAAAGGAAACATTTAGGTATAATA
AAGACACATTGGCCTGTTCACTAAGGGTTACTTCAAAGGACATCTCAGTCACTTTGATGGGAAAAACACG
CCAGAAGAGATCTGTGTTCTAGAAACTAAGATTATTCTAAGACCTATGTAAACATGTAGGTTGGCATTAG
AGTCTCTCAGGACACTTTTCAGTGCCCCACTCCTGGACACTGCATTTAGATCTATTTGTGGTACTCACAC
CAGAGAACAAAGTTTACATCATGCCTTTTCATACTGCAAACTCCTCAGAACTCGTTCTCTCTCACCTGTT
CCTCTACACCTTCCTCATGTTCACCATACACATCACCTTTCCAAAACAGTGTTTCCTAGTGTCCATAATT
ACTTGAGGTACCTGTTTTATGCTTGAATTGAAAATTCTGATTTCAGTATTTAATAATTATGGCAGTGATA
GTTCATTACTGATATAATAATATATATATTTTTACTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATATATTTT
AATGCCATTTCACAACAGCATGAACTCCAGGATTTTTATAGGCATCAGTGTTTCAATATCCACTGTTATG
GTTTGTATATGATCACCCTAGGGAGTGGCA
>mmu.U11.4.chr14
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTGAGAGC
AACCTCCACATAGCTAGACTGCGTGAAAGGGTGAGCCAATGAGGTGAGGGACTCTTTTGAGTGGTAGGTT
GTTTGGCCAATGAGCTGAGCCCTTGGGCTAGGGATCCGGAAATCAGGACCTCGGGCACGAGGCTCATTCC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGCAGGCTTGCCGGGCTGTTT
TTTAAAAAGTTCGGGCTCCTGGTGTCGAGCGGGGCGCTCTCAGCCAGGGCCCGCCCACCCTTTTGGGTTG
GCATCTGCCCCACGCCCCTCCCCCACGGGCACGAGGTGGCCTGGGCGGGGTCAGGGTGGACTGGAATTCG
TTATTCCAGGCCGAGTGTGTGGGAGGAACGCAGGGGCTGGAATAGGAGGGAAAGGAGGTGGCTCCAGGAG
AGAGCGAGAGAGGGAGCGCTCGCATCGGGGCTCAGTGGCACCAGACCTAAAAAGAAATCTAGGCAAGGCT
CCGGCACAGTCCACGTGGTGGAAAGGTACTTTGCTGTCGCCGACCTTGGGTGGGATTTGCTTTGACGGAC
TTGGTCTCAGGTTAGGCCTGAGGCCTAGTGCCTCTGCCCAGAGGGCACACGTGGAGACCTGGAGAAGCTA
GGCCTGGCCTGGGACCCTTCACTGCTCGGTGGGTGAGATCTAACCCAGGAGAAAACCCGCTTGAAGGAAA
GACCTTCTGGAGGAGGCGTCCAGTCTGTGAACGGGATAATAGGAGGGTAAAAAGGATTCCAGAGATCTGT
GCTGTCACATCCCTTCCTATGTGCCAGTTAGGCAACTGACTTCCAGATTCTTGGGTAAGGCTAGGGTGGT
GTGGCAAAAACTGAGGGGGAAAAAAAGGCTTATGTTGTGAGTGGCACACACGGGGCAACTCGATTGCTCT
GCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTTGGTATTTGGGAAGCTGGTAAAAAAA
AAAAAAAAAAAGATTGAGGAGGACTTTTAGCAATTGAGGGGTTGAGTATCTGTCGTCTTTCTATGCGAGG
CTGGATTTCTCTAGCTAATAATGCTGGCGGGTTTTCAAAAGCTCAGAAGAGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAAGATTCTTGAGGAACCAGGAACAGGGTCAGGGCAATAAAAGAACTCTTTTACAG
AGTTGAGACTTGAAGGCCATGAGTTATTAAACGATTTTGAAGAGGCCTTGATGGTTCTTAGACTTGAGGT
AGGCTCAGCAACTCCTCCCTAAGTTAGCAGAGGAGGGAAGGAATTCAATGGACCCCATGAAAGCCAGCAA
GTAGTATAGACTCAAATCAACAACTTTGAACCCTGGAGACCTCAGGCCTGTTGGTGTTTTAAAATAAAAC
AAAAACTCCACCCCCCCCCCAATAAAAAACTGGAAAAGATTCAGAAAAGCAACTAAATCCAATAAGTTGA
ATGCAGTTATAGATGACAGAGAAAAAAAACTGATATAGAAGAAAAACTAAAACCCAAACGTATTTGTTGA
CAGAATAATTTTGTGGTATGGAGGTATTAACTACAACAGAAGTCATCCCTATATGTAAAAAATTGTTCCT
TTTGACACTAGGTGGTTAGTTGATGGACAGTTCCCTGAGAGGTCATTTAGGTAGAGCAGCTAAAGGTGCT
TTGGCTAGTGGGAGGTTCTTAGCTCAAATTGGAGCCTTCATGGCANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAGAAAAAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>mmu.U11.5.chrX
AACCACTCAATCCTGGATTCCTGGCTTTCTACACAACTCCTTCAATCAACTGATTACCTATGTTTCTCTG
CTATGTTGTGACACAACCAAGGGTTTTTTTTCGCCTAAGGTCAAGTAGACAAGAACTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATTAAGCTTGCAGATACACAGACACACACATGTGTGCACATGCATGTACATTAAAACTAAGGATATA
GTTTACTTGATATATTTTCCTCACTTACCTGAAGTCCTGTGTTTCCTTCAGAGTACCATTTAAAGCTAGC
ATGTGATGTATGCTGTAATCTTAGCACTTAGGAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGGAAAAAAAGGGGGGGGGGCTTCTGTCGTGAGTGGCACACACACACAGGGCAACTCGATTGCTC
TGCATTTGGAATCGACATCAAGAGATTTCAGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTAATCATT
GGTCCCAGCGCCTGTGCACTTGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATAAATAAATAGAAAAAAAA
AAGAAATGAGGCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACA
TTTCTTACCAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTT
>mmu.U11.6.chr11
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTAGAATAGAATAAATTAGCGTGGTAACAATCATTGTTTTTCTTTATA
GCTGTGAATAGGTAGCGGCCTTTAAGGCAAATCCTGCTGGATTGGAAAGTGGTTTTGCTAATGGTGCAGG
TGCCAGTATAATCCAAACTCTTCCTTGGTGCTTGCTAGAGTCCAGCTGCTTGAGAAGGTAGGGTGAGGTT
AGTCCTGCCCTTGCCCTCAGGGAGACAGCCAGTTATAAAGAGAGACTGGGTTTGCAGTCAACTGGAGCTG
AAACCCAGCTAGGAAGGACTGGAGCTGGCCTCTGACTGCTGGGACCGAAGGCGTGGGCCCTGCCCTAAGT
TTCCCATTCCAGAGAAGCCGAATGAATAGTTAAGTACTTGAGAAGCTTTGAAGTAAGAAGCTATACAGAC
AAGCCCTACCAGCTTCCTATCCATGAAACATGCTTCAGGCTTTTGGGGTGGGGTTGGGGTGGGGAGGGGA
CATCTTGGCTCTCATTCCCAGCTGCCAGCCTGAGCCAACTGACTCTTATTTTACCTCAAAGATGGAAGCG
CAGTTACTGCTAGACAGAGGGATGAGGCAACTTTTCTGAAGTCTCTTGTTCCTGTGGTGGCATAGGTGAA
GAGAGCTTGTTCTCCTATGTCTGCCTGCTCCAACCTATTGTCTCCCTACCCTTCATTGGCTTGGAGTCAC
AAGCGTGCTTGGCTTAGAATTGGCCTTAGAAGTGGCATTTTCAGTAGCATGTGTTTACCATCAGCAGCCC
TCGGCGCCAAACAGACTCTACCAGTTGGGTAGAACACTTGTTAGGCATATGGAAGATCCTTGGTTCCATC
TCTAGCAAGACACACACATACTCAAGCATGCACACTCTGATGTCTTCCTCCTATACTCCAGTCTGCCCCT
CAGTGAGGCTTTCTGTGCCTTCTAATGTGAAGGCTAAAGTTATGTTTTAAGTTTAAATTACTGTGCTTAA
GAGATCTATAAAACAATCAAGAGATTTTGGAAACTTAATTTTTTGGTACCTCAGCAGCTGGTGATTGTTG
GTCCCAGTGCCTGAAGTGGGGAAAAAACCCTATAAAACAAAAGGCCTCTAACTGTGAGCACTACTTGTCC
AAGGACAGATAACTTTCTGGAATGCTGGGGCTGTTGTTCAAGAAGATAACAAGCCTTGTGTTTTCACTTC
TGCAAACAAGTTTGGTTGCCCCAACTGCACAGCATGTGCTTGATCACACGTAGGTAGGAAGTACGTCCGG
ATGCATGCTTGACCCCATTGGATGAAGGTTGGGATGGAGAGGGAGGCTGGAAAGGTCTGAGAGATTGTGT
TCTTCCATAGTGTCAGATGTCTGGTGGCACCTGAGCCTTATCACTGAGAAACATGCTGACTACACTGCTT
CAGGTGAAAGCCTCTGGCAACTTCTGGGTTCTCTGTACTGTCGGGGCAGAAAGCCCATACTGGAGCATGG
CCAGAAGAGGGCAGAGGTATCCTAGGACCCAGAGTTCAAATGAGCACTCATCTCTTGCTTTGAAAGTTGC
TACTCAAAACTTGAGGACTATAGACATAGACCAAGTGTAGTCATGCTATGTCTACAGTTTGGCACGAAAT
GCTAAGGCACAAATTGACCTTTGTCCTCCCATTGGTCCTGCCCTTGGGTCCTTCAGTCTCCACATACTGA
AACTACAAGTAGGAAAAGAGGGAATTACATAAAGATCTTGGCTTCTAGTGAAGTGGCCACCATGTCATTT
GCCAGACAGCATGGTGGCAGAGAACCTGAGAGAATGCCAGCACTGTACTGCCTGGAGCCTATATCCCAAT
AAGGCGGTTACTAGGGAAGCATCCCACCTCTACCCTCTCTACTGATCCTGCGCCTCACTTCAGGGCTCAG
GGTGGCCAAGAACTCCCAGGCCTAGCCTAAGCTCCCCTCAGGAGGATTCTTCTCTAGCTCAGCCTGCAGC
AGGAGTCCTACTTTATCATGCTCTTATTGGTTCCTGACAGCCTCCATGGCCATCTCCTCTATTCTCTGAA
GTAGGAAAATAAAGATGCTTAGTAACTGTGAGAACTTAATTAAATTTAGTCTGACAGTTATTGACTGACT
GCCTTTCCTGTACAATGGCAAGAGACCTGT
>mmu.U11.7.chr15
CCACACAAACAGAGTCTATGAGCTCTGCACGTGCTTCCTCCCTCCCTCCCTCCCTCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTTGTTGTTGTTGCTTTATTTTTGCTTGTTTTGGGTGTTTTGTTTGT
CTTGATTTTTTTAATGGGAGAGAAAAGGCATAAAGTTGGATAGGTAGGGAAGTTGTAAGAATCTGTGAGA
AGTTAGAGAACGTCAAGGAACTGAATAGGATGAAAATGCATTGTAAGGAGAAGTTGAACAAAAATTAAAA
TAAATAAATACACAAGCATGCAAACTGTTATTATATTGCAGGTCAGAGCTTAGACATGTACACAGTGAGA
AGCAAGATTGACTCCTTGGCACTCAGTCAAGGCCTTGCCTCTTCTCTTAGTTACTGCTTGCCTATCCTCA
GAAAGATTCACCTATTTTTAGCTGCTTTATGAGAAATCTCTAGAATGTACCTCACCTCCTCTTACACACT
GCCTTATTTACATGATGGAAGTCTTAGCTCAAAAGTAATTTTCTGCCCTCTCATTGTCTCTCTATGAGCA
TCCCTGCTGCCAAACACTAAGGTGTCTCACTCCCTACTCTAACTCTGATACCCAGTGTAACCATCATGAT
CACCACCACCTGTCATGCCTGTTGCATCTCTGCAATAAGGCTGTAAGTTATGCAAGAGATGGGTGTGAAT
TGGTTTTGGTAGTTATCATTAAAGGACTGTAAAATGAGAATGTTTTGTGAAAAGAACATAGGCTTCCTTT
CTCGAAGCATCTTTTTCTAGTACAAAGCAAGATAATTTTCAAGCACATCGCCATTCTTAAGGACCAAGTG
TTTTAAGTTAAATTGTGTGAGCCCAAGATCACTGACCCATAACTATTTTTATTTATTTGGATTTTGTGTT
CACCTTTATTCACAAATATGGATATAAGGTGATATGTGTAGACTCATTTAAGCTTTTCTTTGCAAGTTAG
TGACTCAAATAAACTTAAAGTCAAAGTGACAAGGACCACACTAGAAATCTGCACTGCAATAACAAAAAGT
GAAGTATCATTATGAGAAGATGTCCAAAGTGGAAAGCTACTTGGCTGGCTTATTTCAAGGCTTCATTTTC
ACCTCACCCCACCCAGACCATATTACTTATGGAAGTAGAGAGTCATACAACGTGAGTTGAAAATGTTCTT
TGTCTGTGACATCTAGAAGTTTAGTATGAGTGAATGTAGCTGGAAACTTCTACCACATTTGAAAAATAAG
GGGTTTATCTAAAACTTTGAATCTATTTTAATGAAAATAGCCATTGCTAGGGAAAATGATAAAAAGCACC
AATTAGTTCTGCAAAAGCAAAGCATGGAAAAGAGACTGAGAAAGAAACACCTGAAGGCCAGCATCCCCCT
ACACTTCTCTTGAGTGGCATGAGTTGGTTTCCTGTGGTTTGTTACAATTGTGTCTGGACTACATTGACTT
TGAAGAGACAGATTTTTTTTTTCACGTTGGGTTTTTGGAGTAATATCCTCTAGCTGTCATGAATGGTCAC
AGGGCACAGACATTGCAAGCATGATGTGCAGGCAGGACCAGTATCCCCTTGCAAGAGGTACCACAGGCAA
AGACCTGCTTCAGAACTAACTCAAATTACACTGATGGCTGTTGATGGCATTTCATCCTAAAATATCTATA
GTTTCAGGGATTGTTAAAATTTAAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGAGAATGCATATGCTTAAGACAGAGTAAATCCCAGCACAGAGAGCCTTAGGCATGA
GGTCCCACGCCTAACCCAGAACCTGTTGAC
>mmu.U11.8.chr12
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACA
AAACCTCTGATTGGGATCAATCTGTAACATATTTGTTTCCCTCCCTGGTATCACGTTTCCAACACTGTAT
ATTTAGTGCTACTTTCTTACCTGCATGAGCAGAATGTGCACACACATTATATAATCTTAGAAGGCCTGTG
GATCAGTTGTGTTGACTCACTTGAGGCTGTATACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTCTCTGTAGCATTCTCATATTCCCCATGTGTGCTGAT
GACTGCTCTTGGCCTGAAATTGGTCTACTCTTAACTACTTTACTTTCAATCTCTCTTCCTGGTGAATATA
CTTCCCCTCATTACTCAGAGCAAATCACTCTATAATAAATGAAACAGATGCTCTTCTCAGGAATGAGTAA
TGGAGTTGGTCGTGAGGCTGTGGAGGACAAGGAAAAGGATTTCTGCTTGGCATTTAGGGCCATAGGAAAG
GATCTAGAGAAAGTAAAAACAAAGGCCATAGAAGCCAACATGCTCCTTTGTAAAAATAGTTCATTTTTAG
ACTTGGGCTTGAAATTTGAAACATGAGGAGATACATGTACTTTCAATCCAATGACTGCTGTATTAATTAG
CCAGGATGAACTTGGGGATATCAAGGATAGGGAGTTGAAGTGGTCTCAAGATTAAAAGGGATGAATAGAA
AAATATCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGAAACTATAAAATACAAGTAAACAACAGATTTATTTTATAGGTGAAAGATTTATATATATCTGGAAAC
AAATAATATTTAAAGGAGAGTAGACTATGCTATGGAATCTTTCAATTGAGGAAATAAAGATTAGAGAATT
TAAAAGATGATGTTCAAGCACCCAAAAAGTCATTAATTTGTTCTCCTGGTTACTTGTAGGATTTGCAATG
ACAATGCCTAGAGAGATATTAGAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTACATGAAAAGAGTTACTAAGGACTGCTCTCTGCTATACCCGGAAATCACAAGAGCT
GTGCCCAGCTATCAATGAAGAATAGGCTGTGTAACACCTATAAGGAAATGTTCTTTTGTTATGTGTTTAG
TTTCTGTTTTAAGGAAGCAGGGGTTGAAGC
>mmu.U11.9.chrUn_random
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATATTATAAAACAAAACAAAAATCCAC
AAAACCTCTGATTGGGTCAATATGTAACGTATTTGTTTCCCTCCCTGGTATCACATTTCCTACTCTGTAC
ATTTAGTGCTACTTTCTTACCTGCACGACCAGAATGTGCACACACATCATATAATCTTAGAGGGCCTGTG
GTTCAGTTGTGTTGACTCACATGAGGCGGTATATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTCTCTGGAGCATTCTCATATTCCCCATGTGTGCTGAT
GACTGCTCTTGGCCTGAAATTGATCTACTCTTGACTACTTTACTTTCAATCTCTCTGGTGAATATACTTC
CCCTCATTACTCAGAGCAAATCACTCTATAATAAATGAAACATATGCTCTTCTCAGGAATGAGTAATGGA
GTTGGTCGTGAGGCTGTGGAGGACAAGGAAAAGGATTTCTGCTTGGCATTTAGGGCCATAGGAAAGGATC
TAGACAAAGTAACCACAAAGGCCATAGAAGCCAACATGCTCCTTTGTAAAAATAGTTCATTGTCAGACTT
GGCCTTGAAATTGGAAACATGAGGAGATACATGTACTCTCAATCCAATGACTGCTGTATTAATTAGCCAG
GATGAACTTGGGGATATCAAGGATAGGGAGTTAAAGTGGTCTCAAGATTAAAAGGCATGAATAGAAAAAA
ATCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTTAAAAAACAGAAGAAA
ACTATAAAATACAAGTAAACAACAGATTTATTTTATAGGTGAAAGATTTATATACATCTAGAAACAAATA
ATATTTAAAGGAGAGTGGACTACGCTATAGAATCTTTAATGTGAGGAAATAAAGATTAGAGAATTTAAAA
GATGATGTTCAAGCATCCAAAAAGTCAGTAATTTTTTCTCCTGGTTACTTGTAGGAATTGCAATGACAAT
GCGTAGAGAGATATTAGAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTACATGAAAACAGTTACTAAGGACTGCTCTCTGCTATCCCAGGAAATCACAAGAGCTGTGCC
CAGCTATCAATGAAGAATAGGCTGTGTAACACCTATAAGGAAATGTTCTTTTGTTATGTGTTTAGTTTCT
GTTTTAAGGAAGCAGGGGTTGAAGCTAATG
>ola.U11.1.GOLWmdP0018_e01.g1
>ola.U11.2.GOLWno3431_p20.b1
>ptr.U11.1.chr1
TCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTTGATAAAGATCT
ACTTCAGTCATCTGAGGTACAGTATTTCATTTTTCACATTAATGCTATGCTGTACCTTATTCTACAACTC
TTTTCACTCGATTAAAAAAAAAATTCTAATACTCCTTCGAAGTGCAGCATATAGCATGCCACAATATGAA
CACACCATGACAATCAGCTTATGCGTGACCTTGTGACCTTGTGCTTCCACTGCACGCCTGCCTGGGCTGC
TCCAAGGTGGTGGCTAGGGGTGGCACAAGTTACACATTTTCAATTTGGATAGGTTGTGATTCTTGTCTTC
CCCAGTCAGATACCTACAGCCGCTGAGAGCCGGTATTCCAACGCCATGAGACGCCTTCTGTTGTGAGCAG
TTGACAAGAGAGACCCAGCACTTACTGCAACCGGAAGGAGCGGTTCCTCCCTCGCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAAGCCCTGAGTATATTTGCATATCAACTCA
CTACATTTTTCTTCTAACTAAAAAATCGAAAGGACAAATTCTAGATTCTCCTTGTGAAGTCTTCCTTTCA
GTTCAGAAGAAATGGAATTCGCTCTTCAACTTCAGGAAGTTGAAATAAAGAGTTGCTTGGATTTTTGTGT
TCACCTTTACCAAAAAATGGATTTGGTAACACTGCCACCCTGCTTTGGTGACAGAGAAAGCAAAAAGGGC
TTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTCTACGTGCGGAATCGGAGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGCATCAAAAAATAATTTGG
TCCTCATCAAATTTCAAATCGTTAACGTTAATTTTAAAATTAAAATGAAAAACCCGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGCCGGGCATGGTGGCTCCCA
>ptr.U11.2.chr7
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTACAGTTTGAGGAG
ATCCCACCCCTCCGAGTCAGAGTGAGAAATCATAGCTGGCCCCCGGTTGCACACAAGTTGGCAGTCATTG
CCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATCCTGAACTCCTGGCCTGATACCACTTGCCCATCCAGGAGAAGTTCTTGA
TTAGCCTAAAGGATAGTTAACTAGAAGCTTCCAGGGCGCAGGACTAAGTTCAAGCTGAAGTTAAGGTGAT
TCTGTGAGAAGGCAAACACCTTACACAGTGTAGGTGAGGGGAGATTCACGCACCTGGAACCACCCAGGCT
GGCCGAGTTCAGCCTAAGTCACCTCTGGTAAAGAGGGAAGGAGGGTCCACCCCTGGTTCAGTTACTGACA
CCATAGGTGTAAGTCACAGATGCCTATGTCCTGCTGCTCTCCACAGGGACACTTTTCCTTGGAAGAGATT
TACCAAATGCTAATTGAGTGTTTGTTAAATGTTTACTATGGGCCAAGCCCTGGGTTTTTCTCTATGCATT
AAAAGTGTGAGTAAAGGGGAAAAAAGGGCTTCTGTCATGAGTGGCACACATAGGACAACTCAGTTTCTCT
TCATGCGGAATAAACATCAAGAGATTTTGGAAGCGTAATTTTTTGGTAGTTGGGCAGCTGGTGATCACTG
GTGCCAGCACCCTTACTCCTTGTCTAAATCAGAGGTTGCAGCTCTGGTCATGTTATATTGGATGATTCCG
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTAAATAAAGGGCTCCTGATCTACTA
GGGAGGTGAAGGCTGTTGGTCATTTGCAGGTAGTTAAAATTATATAGTTGTTAGGAAGTAGATGGGGCCA
TTCCGTTGTGGGCACAGGGGCTGAATTCACATCACACCTCACTCGTTAGTAGATGACTGTAGATATCAAA
TTGCTTTAAACCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTGTTTGAATGGAATTTCTGCATTTCTCCTACTCCCCAG
AAAAAAGAGCCTGACCATGTCTCTCAGAGGCGGCCTAGAAGCTGGAGAAGATGTCTCAGAACTAGTAACT
TCCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTTCCCCTCACCAATCTTTCTGTTTTTAGAACTTTTTCCTACTCTTTTCCTTGGGTTCGTCCCACCCAAG
AATAAGTTGCTTTCACTCTTGCTATTTGCTACAGCAATGCCCATTCCCCTACCATTTCCACTAGTCTAAA
ATATGGATTTTACACAGTGGTTTAAAAAAAGAACGACGTTGCTAATATGTTGGTTTGGGCCTAGGGGGAT
CTTGTGAGATCCTTCCGGGCAGAGGTAGGA
>ptr.U11.3.chr8
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAGAGATTCACATAGCTTTTCTTATACAGTAGATAAGAACT
CAAGGTAACTATTTTGATGTTTTAATTAACCTATAATGTGAGTGGGAATATAATGTGAAGTCTCTTAGTC
AAAACAATAAAAACCAAGATAGGATCTACAAGTTTAATGAAGAGAAAATAGGACCACATATTCTAATGTA
TTTCTGAATCTATAGTGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAATTGTTTTAAGCGCT
ATATGACTCTGAGAAGCTTATGAAGTACTAATGAAGATTTGATGAACTCTCAAACAAATTTTTGTTTGCT
AGAAATATAATTCTTGGGGAAAAAAGGGCTTCTGCTGTGAGTGGCACACATAGGGCATCGTTTGCTCTTG
GTGCCAGAATCAACATCAAGAGATTTCAGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCATTGG
TCCTGTAGCCCTTACTTGTGTAAATTAGACAGTTGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTGACAGTCATGGCCTATTGGGTAAATCCAGGTTTCTGCTCCCTCTTAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>ptr.U11.4.chr9
CTTGTATGTCCCACATTACTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAACCACACATGGTCTTGAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAT
AAACAAAAAAAGGGAGCACTTATCAGAGAGCCTCATATTATCACTGGTCTACAGGATGAATCTGGGCCTT
TAAAAGGCAAATTGACTGAGGGAACAATTTTTTTAAACATAGATTTAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTT
GGGAAAAAATACATTTAAGACAAGAGTTACTTTTGGAAGTGTTTAGGGGCATGGTATTGGGATAGGATGT
AGAAAACTGGTCATTTTGTATTTCTTATGTTGAGTGGTGCCTTGAGCAGTATTGGTTTGACTATTGTGCT
TTGTAACTTTCACATATCATATGTATCCTCTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAATAGGTTTGTGTTTGAAGGAAGGAAGAAAATAAGAGAGAGAGAACATGTACATGT
TCCAAGATTGCAGTGAGTGAGCGGCAGACAAAGAAAGCCTGATTACAATAATTTTCCATCATTTCTCTAT
CCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTAACAGAAACAACATACAATGGAGAGAAAGAAGTCTGTGTCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>ptr.U11.5.chr19_random
ATATAAACTTATATAAACTGTATAAACCTCCAAGAGCAGTAAATGACATTTTGTTTCTTAGGATTGCTGA
CAAACTCAGTTGAATTTAATAATTTCCAAATTATATAATTTTTGTCACTGGCTGCAGACTTTTGCTACAT
AAAACGAGGAATCAGAAATTTAACCAGCTGAATTTTCTAAGTTCTTAGTTTTAAATGCAGAACAACTTAA
CCTTCCCTTTGCTCCTTACTTTTCCTGTTTTCCTATAGTCCACTCCAATAAAGTCAAAACATCATGATTT
ACAGACACTTCTTAGCAGGTCAGTAAACTTAGTATCTTTCCCAAATTTCTTGGAAGATTCACAAAACATC
CTTCTTCCTCTTTATGGTTTCCTTTTTATTATTACCAATTTAAAAAACAATTAGGGATACTTATAAAATC
AGTCTCCAGGATGCCTCCTTTTTTTCCTCCAAATATACTGATGTGCAGTGCCACCAAAAACCACCGCCAC
CTGTACTCTAATTTCAATTCGTAGCATCCAGAATAATAGCTCTGGAGCATCTAATCTTCTAAATAAATAT
CCTGTTGCTATGTAAACACTTCCAAGTTAAATCATTTTTTAAAAGCACAAAGTTTTTAACGCCACCAAAA
ACGTAAAAGACAAAGCTACAGAAACTTAACACTACCCAAAATATTTAGAGCTCCAGAACTCTTCGGCCAT
GAACTGATAATATACTACAGTTACAAAAAAAAGGTGGCGGGGGGGAGGATAGTGATAAAGAGCTAAAAGC
ACCTTTGTGTGAAAAATAAATTATCAGAAGAGTATTTGCCAAACGCCTAGCTACTATCACTCTGATTAGC
ACACAATTCGGTTAGGCATTTTCTGAGGAAAATCCCCATGCCCAAAGATCTTTAAATGAGTCACGATTCT
CATCTGAAAAAAAAAAAAAAATTAGAATGCTGACAACACTAAGGTAAATTCAACTTCATAAAAGCATTTC
TTAAAAACTGTGTTTCTAAAAAAGGGGGCTTCTGTCATGAGTGGCACACATTGGGCAACTCAACTGCTCT
TCATGAGGAATCAACATCAGGAGGTTTTGGAAGAATGATTTTTTTGGTAGTTGGGCAGCTTGTGAGAAAA
AAATGTTTTCAGGCAAATCCTCATCCCTCCTCAAAAAATAAAAAATGAAAAAATGGTTTTATAAAGCAAG
TAAGTCATATTCTAAACAACTATGTTCACAGGTTAGCTCATTAAAGTCAGTGAGATACGGTCATAAATTA
TATAAATACCTTTACATGTACAAAAACATTATCTTCAAATAACGGATAAATTAATCAACCTTCTAAGGCA
GGACCTCTACACTTATAACTCTACATTTACAAATGGAAAAATATTTTTTCCCTAAAGTGTTCTTACATTC
AGACTTCAGAAAAATTCAATGATCCAACAGTATTAAAGGAAACATGACACTATGGTCTTAAATAAATGTA
ACTTGAAGTTTATTTTATCTAAAATAAACTTATATTTAGAAAATAAACTGAAGAATAGATAAATGCATGA
ACTATAATCTATAAAAGGAAGACTGTGAGGAGCAGAGTCAATTTTTATTGAATTTCTATAGAAATGTTTC
CCAAATTAAATATGTAATCGCTATTTGTGCATGTAAATACATACACACACATCTCCAATAAAACTCCACT
GACTTGTAACAGGCAACTGTAATAAAGTGATTAAAAGAGAGTGACGTAGCAATATAAAGAGCAAAAACTA
TGTGAAAGTCAATGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAGCATTTGAAGCAGCCAGTACTGACTTATCAGACTTGAATGATATCTAAT
TTCATGCTCTTTGCCCCATACCCTCCTACAACTACTGTATGATACATAATTCTTTTTAATAAATTAAACA
TAAGTTTATCTGATAATTCTGAAATATCCTTAGAATAAAAGTGGAGATTCTAGAAATAAGTGTGCCCCAA
CAGTGGAGAAATCAGTCCTTTGATGATTTCAAGCCTTTATTTTTATTTTATTTATTTTGATATGGAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
>ptr.U11.6.chr15
GCTCACAAGCTACTTCTTAAAGGAAAAGATAAGCCCTGAGGGCTTTTACTCACATCTGTACAGGAGGGAA
CTCCTCTCTACAAAGAGAATTCAGTCTGACTCATGTCATAACAGCATGTGAAACTTATCTCATCGAAGAC
AATAAAAGCACTCAATTAGATGGCGCTGATTAGGTGTGATATATGCATTAATCATTGCCTAGAACTTATA
GTTGTCTCTAGTTTCAACTCCATTTTATAGAAGAGGATGCATAGGCACTAAAGTACTGCAACTAAATAGA
GGGTGAATCTTGCATTTGAACCTTGGCATTTTGTCTCTACAGCTGCACTTTATACTGCTACAATAAACCT
TTGAGAGCTAGACATTTTTAATTCCTAACACAGAACTTATAAGCAAACCGTGTTTTATTAGTGATATAAA
CACATTCTCCTATCTAGTTTCCCTTCAAAAGCTCTAAGTGGTACATATCAAAAGAAAATAGAATATTTAG
AGGGGTGTATGAGTAGTTTGTCTGATAGACTAAGAACTACCTCATAGCAAATTAAACCAGAAAGCTGTAA
ACTTGGACCACATTCACTAAGCCTCCCACGATAACAGATTTACTAAGTAAATGGTTTACAAATTATTTAC
AAAAAAAAGACAAGTAAAAAATATTGCAAATAATTTACAAGTACTAGAATTTTGATGTGATGTCCTTGAT
TTTTATCTAGAGTCTATATAGGACAAACCATATAAAACTATCATTGGAAACCATCTACATATTTTGTTCA
ATGTCCCTTACACATAATTTTTTTCCTTTGAAAAAGTAATCCACATCTTTTACAAGATTATAGGAGTTAT
AAAATCCATTTCTGTTTACCTTGTTACTGGCTATCAGGAATTTCTATGTGTGGGTTTAATCACAGGTTAA
TATATTTGCTCCTGTAATCATATATTTTCGACTTCCAAAAAAAAAAAAAAAGCATTTTTTTTCTCTATTC
TAAACGGTTTTTTGAAAAAAAAAAAAAGCTGCTGTTGTGAGTGATACATGCAGGGCAACTTGATTGCTCT
TAGTGCAGAATTGACATCAAGGAATTTTGGAAGTATAATTTTTATGGCAGGTGGATAGCTGGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTGATTGTTGGTCCTGGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACACATCTTTT
TAAATAAGTTTTCCTCAATCCATTCTGAAAGTAAATAGGTGATTTTTTAAAGCTTTATAAAAAAAAGTCT
TTCTCAAAATTAAGGTAAAAAAACTTATATTGTTTATCTGGAGGCTAATGCTGAAGTTATTTTTTAAAAA
ACCAGAAACACTACTTCAAAGAGGATTTTTAATAATAAGTTTTAAATTTAATTACTATCATCATATACAC
AAAACTGGAAGAAATGGGACTAACGACCTCTAGACTTATTACTTCAGCAAACCACCTTCCACACCCTAAC
AAAGCAGAAAGTAGTTATGTTCTGCTCTTTGGACCTCAAGTAAACTTCTACCACTTCAAGTTGACATCTG
AGTGTCCTACAGGCTGGAGAGTCTCGACAGGTCTTGACTGTATACTAGAAATGCCTCACCCACTCTACCT
GATGGTTTGGAGCTTGTCCCTGTCCTGTGAATTAACCTAAAAGGATGTATGCCCTGGCTCATCTTAAGTA
ATGGTGATTTTTATTTCTCTTTATGTATTTATGTGAATGTATTCAAGGACAGGGAAAGGAACTGTCTTTA
GTTTCATTGACCCTTGTCCTTTGGAAGATA
>ptr.U11.7.chr22
TCAATGAAACACTCCGGAGATATTCAGCACCATTCTTCAAATTGAATGTAAATGGGACAGGTTTGTTTAT
TGTAACTTGCTATTTTAAAAAAAATTATATTTTGAGATCTATTTATACTAATACATATAAATCTATTTCA
GCCTCTGCTGTGTTTTATCTTATCTCATTTTTATTTTAATATCTAATCTCCGTTTTTAGATACTACCCTG
ATTTGTGCTCAGGTACTGTCATATTATATAAAACTCTCGTTTTGTGGAAGAAAGGGATGGCCACGGGATT
ATGAAACCTGGCCTAGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTGGTGCTGTCAGCATTGCTTAGGTTTATAGGTGTTTATACTGTGCGCAGGGACAGAGTACTTCCAGTA
TCCTTTGAAAAGACAGACATCTGATTTATGGAAACATTACTTATCACGGTGTCATGTTGTAGTAAACAAG
ATTGTGGAAAGGTGTCAGCAAGGAAAATTAATCTCACTCAAGCTAAAAATAGGTACTCTTGACAATTATG
TAGAAAATGCATGCTCATAAAACGTATCATCATATGCAGCATCATTGCTTTTAGAACATTTTTCTTGTCT
TAGACAGGCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTCAAAGTTCTTTAAGCAATGCCATCAGAAACCTGAACCC
AAATGTATTTAACATATAACCCTTTACTGTGGGGCTCTGAGCAGTCATTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTGCCATTTATTCATTGCTTATAATTTTCAAAAGTGAAAGACTGGAA
AGTCATAACAGGAATAATATATTTGATGAGAAAATTTGTTTTCTGTGACATGCAAAACGAAACTATAAAA
TCAACCACCCAAATTTTAGACAAATTACTTATAAACATAATCATTAGGCCTATTTCAAAGAATACAGAAA
TCATTATATCTAATTTACAACAATAAGTGGGCATAGCAAAAATCTTGATGTAATTATTCAGAGACATAAT
ATACTCTGACTATACCAAGCATATGATAAGAATATCAAGAAACAAGATGTAGTAGGTCTGGAGTAGGTCC
TAAACATCTATTTATTAATAAAACTGTATG
>ptr.U11.8.chr10_random
TATTTTTCTTACCCACGAGTCCATCTCACAGAGTAAATCATAATCTTCCCATTTCCATGCCCTTTCACTG
ATGTCAAAATCCACCCCTTATATTCCCAAGCCTTACTAATCTTCAGTTTGCTCAGATTTCTGTCCAGGCT
AGAACATTCTTCACTCAGCAGCCTATGCTGAACTGAAATGGCCTGTAGTTGCTACCATTCCACCATTTTC
ACTTGCACCTCTGTGTTCCCTCCTTCCTGGTGTTGTGGCCTTGTGTCTTGACAAATATCCTGAGGATCCA
GTGACAAGAGCTATGGATTTTACAGCATACTTTCATCTAAAGCGGTATTTTTTTCCTCTTACCATAGTAC
TGACCTTGAGGCATTCAATATCTTCTCTACATTGTACTTGCACAGAAATCCTAATAACAGCTTCTTAATT
GAGTTCCGGAACATAGTTAGCATTATTTGGGATAAACATTCTAATTGTGTTGTAATCTCCTTGTAACAAA
TAAACTATAAATTTTCCTGATTACTAATAAAAAGAAGAAAGAGGAAAAAAATTCATTTGTGGACAAATGC
TCTTATGAAATGCTTTGCGCTGGCAATTGGGAATCAGGAAGGGAGGAGAGACACAACTTTCATGTCCTTT
TTAAAGGTAGCATTCTAAAACTCATCGCCAATGATAGTTGAAACAAGAAAGAAAGAAGTATTGGAGGAAA
AATGCTTGATCCTTCCTTCTGAGCTAGGAAGTCTTAGAAGTTACATATAAAGTTTAGAGGTTGAGTGTAG
CTTTTTACCCTGGCTGGAAAAAAAATGCCTATAATTTCTCTAGTTCAAGATACTGATAATCAGGAACATG
GTCTATTTGAGTATAAATTAAGTCTCAAAATAATTCTTAGTACCACTGCAATATCCCTCAAACAAGAAGG
TCTGCATTGATATATATGTTTTATACACGTGTACATATGATAAGCACAAACACACATCAATTATTCCATT
AAAGTCATTATGCTGCCCCAGAATATATCCCTTGCTTCCTGTATGCCCCATCCATACATCCATTTTCTGT
ATGGAATGGATCTTCAAATCAGCTGACATTTAATTGCATCACTCCTTTGCTTTTTGAGGAAGCTAAACAT
TATTGATTTATTTAAAAAATAACCCTGCCTCCCCAGTTTTGCTGCTAAATCATCATGCACATAAGTAATC
TAAGTGGATTGCAGGAAACATTAGGACTGGCAATTGGCGTTGCCAGCTACCAAAGCCACAGCATGGTTAG
AGGCTAGGGAAAGCTAATGCAGCAAAATTGCCTATTGCCTCTATGTAATCATCACCCCAAAGGAAAAGCA
CAGCTTCTTCATCAATCTCCAAACCACAAATAAGCTGAAAGTGAAATGACCTGCCAGAATTCCTCATTGG
TGCCTTTTATTGTCCATAATATTAAATTAACTAGACAGTACATGACATTACAAGATAGAACAAGCCTCTT
GAACTGTAATTCACAGTGACTTTAAGAGTTGATGACTATGGGTATATGACGGTCACTAAGGAAATATCTC
CCATGAGCCCTAGCATTAACAGGAGCATCTCCAGATACAGAGACATCATTAACATCATTTATCTTCACTG
AAGAGACAGAGTACATGACTTTCACCTTCAGAACATCTGCTACTCATGTAAATGCAGAAAACTTGTTCAA
GTATTTCAGGATGCCAAGTGACCCACATATTTTCTCTTAACAAGAGTTCATCTTGTGTTCTTAGCTTATG
ATTTTTATTGAATTATTGATATTTCCCTCTGGACATTTTCCAAGCAAAACAAGAGACTGTATTTCATTTG
TCTCTGTTTCCAGATATCCCAAGGGGAAACTAGATCATAATAAATACTGAGTGTATGCTAGCTGAAAACA
TTGACAAATGGAACTTTGATTCTCAATATTAAGTAAAGTATACTATATGTAGTAGGTTAAAAAAATAAAG
AAAAAAAAGAAGCTTGTTAAATTTAATTACATTTGGTGCATAGAGGAGTTGCCAAAATGCAAACATGGTT
TCATTGAATTATCTTGGCCTCACAAATCAACTCATTTGATTATATTTTGGAGCAGAGATGCAATAACAAC
CATTTAACTACTGATTTGTAGTTTCAATGTGGATCCTTCTATAATGATGTTAAACCAGAGAGTGACTATA
GTTCAAATAGGGTGTCAACCTCAGTACGTA
>ptr.U11.9.chr12_random
ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTAAAACATTCAACATTTTAACATTCCAAACA
TGAATCAGTTCACAATCTGACCCTCGAAATTTATTTTTCCCACTGAACTTAGACTCTCAACTCCTTCTCT
AGCCAGGCCTGCCCTCCGAGCTCACTTTTTCCTATGTGTCCCTCATTCAGTGCCCTGTCATTGCACCAGC
TTTTCTGAGCTGAGACTGCCACTCCAATCTCAGTCCTGCCTCCATTCCTTTGCATTAAATATGCTCAGCA
CCTCTATCTCTGTATTATGTTGAGCTCTCCGAAATGACTGTTTTTAGACCAAAAAGGGTTAAATATCTAG
ACTAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATCCCAGCCAGACATATCAGTCTGTTCTTCTCCAGCATTTGTCACTAT
CTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>lcl|chr15:51459567-51461766
ACACTGGCCTTCCATAGCAGTGACACGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTCATATGCCAGATGCCATCCCATCAACAGTTTACAAAAGACATAGAGCTTACAGCCT
TCTTTGTCTCCAACTCTGGTCTTTGTCCTCTCATAAATGAAATAAATCCAAGGCTTCCAAACATGGTAGT
GCTTCAGTGGCAACGTTGACTGGCTGCAACTGTAGTGGTAAAGCTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTACAGGGA
ACAAAAAACAACAGCATCCTCAATCACTTGTGGGCAACCCATATCTTCCCTAGTCCCAGGCGGACTCTGA
CAGGTGGGTTTCTAGAATGTTCTAGGCACACACACATGTATCCCTGTATCTAGATGCTCTGTACACTGCC
ATATGTCGCCTGTGGGTAACAGGAAGGCTTGTGTTACCTGAGTGTAGGAGAACTACTTCAATAGTGCTTT
CCTTTTACTGGGACTAAACACCAAAACAATTATTGTTTAATTTCCAGGGAAAGGAGTACCAGAGGAGACA
TGGTGTGACCTTTCTTGTGTCTGTATCTATAGATAGAGATATTCAGACATTGGAATTTATTTCCCCAGGG
AGACAAGTGGCACTGTGCTGCCAGCTGGGCTTGTGTTTGGAGCTGTGTTTGTGTACAGTGTTATGTGTAA
TTTATTTCCCCAGGGAAGATCAGCTAAGATGGCGCATCTGATTTCTAGTAAAGGCTTTTTAAAAATAAGC
CAAACTACCCTCCATAGTGGAAGGAAAACTGTCTCCCGCAGCCAGCTGCCTTATTTGACCGATTGCTTTG
AGCCTAACAGTGACGCTACAGAGGACTGGGAGTGTGGTCGCTGCATTCCGCTACCCTTCCTAACTCAGTA
GTCTCCAGTCCTTTGTATTGCTTTTCTGACTAGGGAGGGGTCAGTGAACTGGGGCTGCTGGTGATCAAAG
CCAAAGATATCCATAGCTGGGGGAGCAGGTGTTTCTTCTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAGGAGGCT
TGGGAGAGTCTTATTTTTGGTTGCTATGCCTGAAGCTGGCTTTGGCCCACTGTTAACTGAGGGAAGGGGG
GTCCCACCTCATATTGCCAATCCTATGTTTCCAAGCATGATGTATTTAATGGGAGGTTCTCCAGACTCCA
TTGTAATACACAGGGCTGTGTCTCTGGTCCTTGTCCAGGCCTGATGACTGAGAGATGAAAAACTGTAGAT
GGCATTACTTAGCAAATGCAATATTTACTTTAATTTGGTAAATGCAATAGGTACCAGTGTCCACCATCCT
GTCCAGTTGCTAGAGCAATCATATATTTCATTTTTGACACTTTTTTCTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>rno.U11.1.chr9
CAACCTGGCACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACAAATGCTTTATGCGGAACAACTTTCTATGGACTATGCCAGTATTAATTTC
TTACCAAGTCTCATTAAAAGCATTTTCTGGTTATAACCCTTCATGATTTTCTAGCGTCTAGATTTCATGA
GTGGCCTTTTGCATGCTTTACTTGGTACCATATTTATTTTCTAAAAATGTATTTATATTTTTCTGTCACT
AGAACTAATATTTAATTCCAAGACCAAGAATGGTATATGGTTGTCATTCAACAAAACAAAGACATAAGTA
AAGATATGATGACTAATAAATCTTGGTAAATATACCCATGACGTGTCTTGTCTATCAAATCTGACTCAGT
CATGTGCATTTATGGGTGTCCTGGCAGTCTGTTTAGACTGATCTCCACGGGATGACATTGTACTGCTGTT
GTCAGCATCCAGCACAATTTGCCTCTGTAGTGGATGTTTGTCCATCTAATCTTGGAAAGGGGATTCTTCT
AGTGGATCTAGAAGTGTTTTAGCACAATGGTTGTTTTAAGTTATGTGTGAAAGTCAGAATGATCATTTCC
TATTTGTGCACATGTCTTTAATGCATATTAATTAGCTTGATGATCACTATTTTAGGCATCCACTGTAATT
AAAATAAAGAATAAGGTTCTAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTCT
GCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCGTTG
GTCCCGGCGCCTGCGCGGTTGTGAAAATAAAGGTTTTCTTTAGTAGTTTAAAAAAAAAAAAAAGAATAAG
GTTCTGTAACGTTCATAAAGCTTATCAAGGAAAACCATGAATAATTATGTTTATTTCATTTTGTTTACAG
AAGCAACACAGTATCTATTTTCTTTGCTGTTATTCAACTTACATATATTTCTCATTTTTATTGCAAAATC
TATTGATTAGTTTCTTAATATTACTCTTATGACTAGTGACTGAGATATTATTATTGATATTATCATCCTC
CTATTGCCTTCACATGAAAACTAGGATTACGTTAATGGTGTAAATTTTTAAGTTGCAGGTCTCTTTTGTA
TAGAAAGATTCCTGAGTCTAGTACTAGTGCCTGAAAAAAATATCTGCATGGTGGTATTTGTAAGTTTAAT
GTGGCCAGAGTATACACATGAAGTTTGGAGTTCCCTTTTAGTTTTATCCAGGAGTGTAGTATATCTATGT
CTTATTCTGTATCAGGTATTGTTTTGCTCTATATTTCATGATATTGACTAAACTTCTCATACTTCTTATG
TACACTGGAGCTAGTTTACTATCATTAGTTACCAAACATAAACATAGAAGGCTTAAGAACTTAATGAAGA
ATATTAGTCATACTGTAGTATCTATGCTCATATAACAAAGTTGACAATTTAACAGTGCAGTTTGAATGGT
GAAGAATCTGGAGAAGCCTAACTTTTCTCCTTCCAGGTTACCCAGGAAGCCTTAAGAAGCTCTTAGCAAA
AGACCCTGGTGTGCCATGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGAGT
>rno.U11.2.chr4
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>rno.U11.3.chr10
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGNNNNNNGCTNNNNNNNNTNNNNNTCTAGN
NNNNNNANNNNNNNNNTTTATAAATCCAAGGAGACAGTCAGGTGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGCCTTGGGGGTTGAAGGGAAAAGATGTTGGAAGCAGCCAGATAGCT
CAATGGGGAAAGACAATTGATGCAAAACTATGGTGATCCGAGCTGCGGGGTTGAAAGNNNNNNNNGGCTA
TTGTTCTGTAAAGTGAGCCAGTGATGGTGCATACTTTAATACCAGCAGGGCANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTAATCAAAGACAAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCAGATAGAGTACGATAGATA
AGTAGGTCTTTTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGTAGATC
TTTTTAAAAACTTTAAAAACAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTCT
GTGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCGTTG
GTCCCGGCGCCTGCGCGCTTGTGAAAATAAAGGTTTTCTTTAATAGTTTAAAAAAAAAAAAACTTTAAAA
ACAAAACTAAAGAGAAAAACTGAAAAGTTGTAACCCCTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGATAAATACAGACTGATGGTCAGATAGACTAATTGAACCATTATTTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTGTTTTGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAATGGAACCATTTTACAAGATTTAGCTTTTATTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGCACATACTCCTTTTTT
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACTCT
TGTTAACCCCTGAGGCATCTCAGTGCTGAGTTAGACCATTACAGTAGAGAATGTGGGGGTGGGGAGGAAC
ACCTCAAGAGTAACCACCTGCATTTCAGGACCTGCATGAAGGGGAAGTGGCTGGGGGAATGGCTCAGCGG
TAGTGTTTGCCCAGCGTCAGAGACTAAGAAGAGGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATGGTTCAGT
>rno.U11.4.chrX
CTTGAAAGGTACTATATATATTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGCAGTTGTCCTTTGTTTATATAGAGATACTTTAACATCTTTGAGATTCTCC
AGGTTAAAATCTCTCCAAACTGTATCATGAATTTACCAATACAATTATGATGCAAAAAACAAGAAATTAT
TCACTAACAATGACATGTCATAAACTAATGCTTTGGCTATCTTTAAGGTGACTGACAATAAAATGTCTTT
AATTTGTGGGAATAAACTTGATGTTTATGATGTTGATATAGAAGTTTAACTTTATTCTTTATTCAGTCTA
AGGATTGGTGAAAGTGCAAAACCTTATAGATAAAAAGACTTGGAAATTCTGAGGACATTGATAAGTAGAA
ACAGGAATAGAATTGTGGACATATGTGTTCCTTAAGAGACCATCTTCGTTCCTAGTATTTATTATTATCT
GTGAGTTAAATCGTGCATAAGAAAGTAAAGCATCAATAATGTCCGGAAGTATTTCTTGTCTAATGTCTGA
TTAGTGGCTTATAAGTCAAATATTTCCAGATTTCTGATAAAAAGCTAACTTAAGTGCTGATTACTATGAC
ATCTCATGGCCCCAGTGAAGACTAACATTGACCTAATGCCTAGAATTATGTGGAATGAATTAAATGAAGG
CCTTCAGAACTTGTCTGATGAATTTCATGTCATAAAACAGATTTTTCTAAAAAGGCAGGAAGAAACTAGG
GAGCAAATGACAAATTACACACCATTAGAAGTATAGAAAAGACTTAAGCAAAATACAAATTATGGAGAAC
AAGGAAATTAGGTTGGTAGAAAATATTGTATTCTGTGTGGCTGTTAAGAAATAATGAGAAGTATACAGAG
AAATGGTCCTAGAAACAGGAAATTAAATTGATTCTCTGCCAAAATCAGGCTAAATGGTATAAACTTATTC
CATTTAAGAATAATCAAAATTGAAGTGATCATTGCTGAAATTGTATTTCTTTAGAACTGATATAAATGAA
ATAAGAACTGAACTTTTCAAGCACATCCAAGTAAAGACTAGTTCATTCTTTGAAAAATACAAAAAGGGCT
TCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGG
AAGCATAATTTTTTGATACTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCTGCGCGCTTGTGAAAATAA
AGGTTTTCTCTAAAAAAAAAAAGAAAAGAAAAATACATAGAGAAAAAAATTATTAAACAATTGGTATTCA
GGGTTTTCACATATATTCTAAAGTTAAGTGTGAGAATGCAAATACATAATTTCAAAGGAAGTATATAAAA
TGTTCTCTGAATTATTCTAAGGAAAGTATTTTTTATCTTTAACTAACTGCAAGAAAGTATGGTCTTTGCA
ATTATATGAAGAATCAAATTTGAGTGTTAAGAAAAAGGATGAAATAAATAAGAATCTCGATGATGATGGT
GATGTTGTGATGATAGAGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAACTCACATTCGTGTTGAATCACAGAATAAAAATAAGATCATCAAAAATAGGTCAGTCTTTTATAAAAA
TGATAGAAAACCAAAACAAGCAATAAAAGAAAGTAATCAAAATTAAGACTCACAGATATTTCAAAGGTAG
AGGATGACTTTGTAATATAAGAAATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCACAGACATACCTAT
TTAGGGATTGGTTTTAGGTCACAAATGTAAAGAAAATATTATCTGAACATGCAGGAAAACCTCACAATTG
CCTTTATAACAGTGTCAATTCAACATCATAACCCATTTTGGTTGGAATAGAATAAAATGTAATGGATTCC
AACATTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGATAAGAATTTGTTTGGATTCCTT
>rno.U11.5.chr1
GGTCAGAATAATTCTTCTCCTTTTGCATATAAGCTCTTTTCTTCCTTTTGCATTTTTAATGTTATTCATG
ATCACGGTGATATTTACCTAAGACTTTTGTTTTGGAAGCAGTCTTTTTCATTGTTGCTTTGCTTTGCTTT
TCTTTGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTAGA
AACAGTCTTTTTGTTACTGATATTGTCTTAATAGAGTAACAATTATTACATGTTAGGCAACGCATCCAAT
CCCAGTTCAAGTGAAGCTACAAGTAAATGACCACAAGTTTGAGACTAGCAAGCCAGGCCAGCTACATAGT
GAGATCCTGTCAGAAAAATCTAAGCCAGCAAGGATTCCATACCAATTATCACCACAGTGCTCCTTCAAGT
TACAAAACAAAGGGTGCCATAAGGCAACATGCATTATTTCCCAAGTCATATTCATCAGTCCAGTGTATAG
AATCAATCTGTAAAGACTGTATTTTATGGAGAAAATCATCTTTATTTTGGTTCTCAATCAAGGAACACAT
TTTCTTACCAGTACATTACATGTTTATCTTTAAATAGTTTGCTCCAAGTGTCTATGCATATAGTCAATTA
ACAGAAAATCTCCAATAATATGAAGACCAATAGCTCTCACAACTAAGTTTCTCCAGTTGCTTATTTTTGT
TCATATTTCAATTACCAGGCCCTTACCCATCCAGTTACTAAAGCCTTGGCATTATCTTGACCACTTCCCC
TATCTGAGCACTTGTATTTAATGTCAAGGTCTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATGACTACCTACCTGACTCATCCCTCATGCCTGGATTACTGGAGGCGCTTAGGAATTTTC
CTTTTAAGAGTCCATCCTGAAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTCT
GCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGATACTTGGGCAGCTGGTGATCATTG
GTCCCGGCGCCTGCAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCATACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGAAGAANAACAACACCAAAAANACAACCNCNN
CNNTGCTCTNCCCCCGTTGTTATNANNNNNAAAACCNNTCTNCATNTCCCNTCCCCCCCCTCCCCCGCCN
CCCNACNANAACNANNAANGAANNTTACCCNNCCCNTNCCCCACTCCTATTNCTGGNNNNANAAAANNAN
AACNCTCNCCNNCCCNCTNTCNCTNCCNANNNNTCTNCNNNNNANNCACNNCANNCGNCTCCNNANGNNT
CCNNNNCNNNGNNNCCCNNNNNCNNCCCNNNNNNNNNCTTNNGNNNNNNNNNCNGNNNNNNNCNNNNNNN
NNNNNNNNNNNNCCCNNNNNNNNNNNNNNNNNNNNNNNNNNCCCNNNNNNCNCNNNNNNNNNNNCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNCNCNNNNNNNTNNNNNNTNNNNNNNNNNNNN
NCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCGTGTTCTGTTGGGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATACACATTCTCCCTCCCTCT
>rno.U11.6.chr6
GCTGGGCAAGGGAAGGAACACCAGGGTCCAAGGACTCTTTGGAGTGATAGGACTGTTTCCTACCTCACCT
TAGGGGCAGTCACATGAGTGAACGTAAGTATATGAAGTTAATACCAAACACACTCACACACACACACACA
CACACACACACACACACACACACACACATTTTAAATTAAAAAAGGCAAATGCAATCTGAATGAAGATAAC
GTAAGTGTGGTGGTGCATGCTTGAGATCCCAGCATGAGTTCTAAGCCCTTGCCAAGCGCTTGAGATTCAG
TGGCTATCTTCATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATACCTCAT
CAATCAGGAAGTATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAGGACAGCTCTGGGTAAACTGCCACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCAGGGCCAGCTCTATGAGCTGG
GATCTTAAGACCTCAGCACAAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTCT
GCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCATTG
GTCCTGGTGCCTGCGCGCTTGTGAAAATAAAGGTTTTCTTTAATAGTTAAAAAAAAAAAAAAAGACCTCA
GCACAGAGCCACTGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTGAAAGACCCTACAAATGAACAAAACAAAAAAGTAACAAAGCCAATT
ACTATGGCTTCCTTCTCTTCATACAAGAAACAAAACCACAGCCCAGAAAGGTTAGGAAACATAGGCAGTG
ATGGGACTGGGCCTGTATTTGAACTCAGGTGTGACTTTTGTCCTAAGCCTGGGCACTTCTGGACACACCT
ATCAGATACATCTCCTGGGAGGCAGGAAAATAAGAGGTGAAGGGACGTTAACACCAGAATCCTCAGGGAA
GAGAAGGAGAAATGGGGTCTTTAAGAAAAGATGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAGATGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGAAGAAAAAAAAAAGATGAGATTTGGGGTGACCTGGCAGCCCAGGCTGAAAACCTTTGAAGG
CCAATAAATACAGAGCTATTATGAGGGTCCTGAACTATCAGCCACCTTCTCTCAGCGCGACAGGACAGAT
GCTTTTAAAGAAAGAAAGGGACGCCTTCTGAGTGAGGCAGGAGACTAGACAGAAGTGATTACACTCCAAG
GGAACGGACACCAGCCGCACCGCCTTCCAGTCAGTAACACAGAGACCGCCTGGCCAATTGTGAAGAGCTG
TGACTACGGTAGCTGTTGGTAGAAGGTTTATGCCAGATTGATGTCTTTTGGCCTGTAAGCAAGAGAGCCA
CTAAGTGAGCTTGGTGCCATCAGCTACAGC
>rno.U11.7.chr16
TAATCAATCAGAAGATTCCCTTCCTACTGCTGTGTCCTTTCACTCAAAGATTTTTCAAGAAGTAATTGAT
GAACGAATTAATACATTCACTGGCTTGGAAACAAGGTTCTCAAGCTGTGATCCCTGATCCGATCCATTGA
AAACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATATATGGTACGTACTCTGGTCACATTAATCCAGAAAGTCAATGAGCTAGTATATTTTT
CTGAAGTTATTTGAAATAAAATGAAAAGTTGGGTAATATAGTATATGTGCATGTGCCCATGTGTGTATGT
GCATGTATGTTTGCATATTGGTTTGTATAGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTG
TGCACCTTGCACATGCACATGACCTGGTCTCTCTCCACCACTATGCAATTAAGAAATCATTGCCAAGACC
TTATCTGCACCTAATCACCTTTCAGTTGCCTCAGTTCTAAGTACCAGAGTACCAGAGTTGATTTGTGCCA
ACCCTTTTAGTATCTCACAAAGTTTAGCATAAAAGCCCCTGAGAAAAATTGAAGGTATGAAAACCATAGC
ATTTTATTTCAACAGAAAATGGAAAACTAAGTCAAATGTCAACAATTACCAAGTTCCATCTAATATATGT
AGTGTCTATTGTATTTGTGAATATTCGAAATATTTTATACTTGCAAATTTCATTTACATGGGAATATTAC
TTGGGCAGAAGTCTGCAGGATGAGGGAGCTTATAGTTAAGGGAAGACTGATGGGGCCCAGTGGAGACAGA
AGTTTTCCAGTCAGCCTTGCTCCATGTTTAACACAGAAGTATAGCTTATTAGAAAAGGTAGGCAATATGT
GTATTAAAAAGTATGCATGAAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTTGATTGCTCT
GCATGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCGTTG
GTCCCAGCGCCTGCACAAAAAAACAAAAAAAAAAAAAGTATGCATGGACATATGCCCTGATAAACAAGTA
TGTTTATACATTCCATAATTGTTTCTATACTTCATGGACATTTCTAATGAGTATCTTACCTTAAAACATC
AAAGCAATGGTCTGTAAAGTGTTTGTTGGTATCATAAAATGATACCAATAATTAATTATAAACATCTCAA
ATTATGGAATACTTATTCTAAAGCTTGAATATAATAACAACACACTACATAAATATATAAATAACAATTC
TATGATTTTGAATTGTGAATATCAAACCAATATCACAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCAAATCAGTTATTTTTCTTCAACATTTTCTAATTGCTTGAGTTTCTATT
GAAGAAAACATAGAATTTGTCATTTCCTTAACATCTAAATGTCTCAGTCACACCCTTTTAAATATTTTTA
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACCTAAGTTTCTGT
TAATATATTAGGAAATAGGAATTAACTCATATTTAGGATCTATATTATCAAATATTTGCCAAGGTCATGT
TAGAAATTATTAATTACCAAATTTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGACATGT
TAATACTCTGTTAATGAAAAGGATAGCACTTACTTGCCTTATTAACTCCTAATCAGTTAATTAGTTAAGA
GTAATTAGAGATTGTAGTCTTATTGCTCTGACTGGTCACCTGAGATTCCAACTAAAACTCCTAAAATACA
CACTAAGCTCAATGGTGGGAGGCTTTTAAAGAAACATAAAATCCTGGATAGGGTTTCCTGTACAAAGCAT
TTGAAAAGAATAAGAATTTTAAGACATGTG
>rno.U11.8.chr10
GCATTCAAGGTCAAGGCCAACCTTGTCTACATCGTAACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGTAACAATCATTGTTTTTCTTTACAGCTGTGAGTGGGT
AGTGGTCTTTTAAGTGGAATCCTGCAGGACTGGAAAGTGGTTTTGCTAATGGTGCAGGTGCCAGTATAAT
CCAAACTCTTCCTTAGTGCTTGGTAGAGCCCAGCTGCTTGGGAAGTCAGGTCAGGTTAGCCCTGCCCCTG
CCCTCAGGGAGACAGCAAGTTAAAAAGAGAGACTGGGGTTTGCAGTCAACTGGAGCTGAAGCCTAGGTAG
GAAGGACTAGAGCTGGTCTGACTATGGGGAATGATGGAGTGGGCCTTGCCCTAAGTCTCCCATTCCAGAG
AAGCTGACTGAATATATTAATACTTGAAAAGCTTTGGAGTAAGAAGCTACACAGACAAGCCCCACCAGTT
TCCTACTCGTGAAACATGCATCAGGCTTTTGGGGTGGGATTGGGGTAGGGAAGAGACATCATGGCTCTCC
TTCCCAGCTGCCAGCCTGAGCCAGCTGCCTCATACTTCACCTCAAAGACGGAAGCACAGCTACTGCTATG
CAGAGGGTGGGACAGCTTTTCTCAAGTCTCTTGTTCCTGTGACGGAGTAGGTGAGAGAACCTGTTCCCTT
ACGTCTGCCTGCTCCAACCCATCATCTCCCAACCCTTCACTGGATTGGAGTCCCAGGCATGGCTGGCTTA
GAATTGACCATAGGAGTGCATTTTCAATAGCATGTGTTTACCATCAGCTGCCCTCGGAGCCAACTGTGAG
CAGAATCTGCTCGTTGGGTACAGCTTAGTGCAGAGCCCTAGCTAGGAACGTGAAAGGTCCTGGGTTCCAT
CTCTAGCAAGACACATACATACTCAAACACGCACACTCTGATGCCTTCTCCTGTTCTCCATTCTGCCCCT
CAGCGAGACTTTCTGTGCCTTCTAATGTGAAGGCTAAAGTTACGTCTTAAGTTTAAATTACTGTGCTTAA
GAGATCTATAAAACAATCAAGAGATTTTGGAAGCATAAATTTTTGGTACCTCGCAGCTGGTGATTGCTGA
TCCCAGTGCCTGAGGGAGAAAAAAAAATCAATACAACAAAATGCCTCTAACCTGTGAGCACTACATGCCC
AAGGACAGATAACTTTCTGGATTGCTGGGGGCTGCTCTATTCTCTGAAGTAGGAAAATAAAGGTGCTTCA
TGTGAGATAACAAGCCATGTGTTTTCACTTCTGTTTGGTTGTCCCAACTGCACAGGATGTGCTTGATCAC
ATGCAGACAGGAAGTGTGTCAGCATGTATGCTTGTCCCCACTGGATGAGGGTTGGGATGGAGAGGGAGGC
TGGAAAGGCCTGAGAGATTGTGTTCTTTGATAGTGTCAGATGCCTGGTGGCACCTGAGCCTTGTCACTGA
GAAGCATGCTGACTACACTGCTTCAGGTGAAACCTCTGGCAATTTCTGGGGCAGAAAGTCTATACTGGAG
CGTGAGCAGAAGAGGACAGTCTCCTTTGTCCCGAGATATCCTAGGACCCACATTCAAATGAGCACTTACC
TCTTGTTCTGAGAGTTGCTCCTCAAAACCGTGAGGACTAGAGAAATGGACAAAATATAGTCAGGTTTTGT
CTACAGCATGGCACACAAAGCTAAAGCACAAATTGACCTTTGTCCTCCGGTTAGTCCTGCCCTTGGGTCC
TTCAGTCTCCAAATACTGAAGCCACAAATAGGAAAAGGGGGAATTACATAAAGATCTTGGCTTCTAGTGA
GGTAGCCACCATGTCATTTGCCAAAGATCATGGTGGCAGAGAACCTGAGCGAATGCCAGCATTGTACTTC
CTGGAGCCTGCGTCCTGATAAGGCAGTTACTTGGGAAGCATCCTGCCTTTCCTGGGCCTCAGTTCAGGGC
TCAGGGTGACCATGACCTCCCAGAAGTAGCCTCAGCTCCCGTAAGGAGGGTTCCTCTGCTCAGCCTGCAG
CAGGAGCCCTACTTTATCATGCTCATATTAGTTGCTGACAGCCTCCATGCCATCTCCTCTATTCTCTGAA
GTAGGAAAATAAAGGTGCTTAGTAACTGTGAGAACTTAATTAAATTTAGTCTGACAGTTATTGACTGACT
GCCTTCCCTGTACAACGGCAAGAGACCTGT
>rno.U11.9.chr17
GAATAAGTAAGTCTATAGTGACTTTTTAAATCTGTTGTCTATAATTTACAAAGCTCATTTTAGCTGCTTT
GTTAGCAGGTTATGTGTGAGATACAAGATGTGGCTGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCACACACACACGCACACACACTGATACACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAATCCACATACAGATATACATACAGACACAGACACAC
TCAAAGATACAAACATACATATATGTAAACAGAGGTACACACAGACACAGAAAAACACAACACGTATAGA
CACAAACATGACATGGATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCATACACAACCACACATATCAAAATTAAAAATATAAAAGTATGCATGGA
ACAGAATTTTTGGTGGACAGTTCCATGTTTTCTGCTGTGTGTAGCACAGGCATTCCTCTATCTGGAAATC
TCTGTAGGTGTCTAGGATGGTGTAGAAAAATAGAGGGTCCCTTCAAGGTTGTCAGAAGCTTGCAGATTAC
TAACATTTTAGTCATTTCTTAATATGCCCAAGATCACATCAAATGCAGTCTGTCTGTCTGTCTTTTTGTC
TGTCTGTCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTGAGTGTTATTACTTTTCTCATTGCTGTGATCTGGTAAGAAGCAAGGAGGGAAGAGATGTGTGT
TTTACCTCATAGTTTAAGAAGAGGACAAGGCCCCATAGTAGCTGGGAAGGCATAAGAGCAAGAAGCAGGA
ACAGATAAGAAGTGGAGCTGTGTGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNACTGAGAGAACCCCCATTTCATACACAACAGTCTGATTTTCAAAGCACTGTGAAGTTACCTCA
ATTCCTTGTCCTATTTTCTGTGTCTGAATTTAAAATGGCATCCTGTCCATATCCTCTAGAGATATGTAAA
GTGTTGTGAGCTTTAGGCCTCTCAATGGGATGTCTACATGGATAAATAACCCATAGCACAGCCAAAGTGT
TAAACACTGTCACAGTATTGAAAGCATGTAAGAACAATATACAGGACGGGACTGCTCCCACAAATACATT
TGCAGAAAAATGAAAATTGTGGAATTTCATTCCAGCACCATCCCAGTATGGTTACACAAAAATAGATGCA
TTTATTTATGTGCAAATTTATACCTAAATTTGTGGAAAATGGTCAGGACTTTATTGCTGCTTGGTACTCT
GAGACCACGCAGTATCATGTAGACAGACTCTGATTTGGTCTACCTCCTCTCTCCATGGGCAACTTCCTAG
AAAGCAAGATAATTTGGGGACTAGGGAGATACAGCACCTGGCACACAATTATGAAGTTCAGAGTTTGAAT
CCCTAGAGCCCATAAGAGCTGGGCTTTAATCCTGACACTTGGAAGGCCGAGATGAGACACTTAGGACAAG
CTGGCTAACGAAACTCTGCAATCAGGGAGT
>gnl|ti|307976921
GCGCCTATCAGATGGTACAGTAGTTCATCATTCCTATATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAAAGTTTGAATTTATTAACCATTTTATTTAAAAGATATTGAAAATATATAATTTATGTAACGTC
CTTCTTTGATTAAAAAGGGCTTCTGCCGCTTGTGGCACATGGGAAGTCCATAATGGGCTTCCTGTGCGGA
ATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGACCTGTGGCTGTTAGTTGTCTCTTGCACTGACG
CCCTAGTTTTATACCAAAGACATTAGATTATGAGACGATTCAGTGTAACGTACTCTCGTAATACCCTCCT
ATATGCGCGTATTACTGTATGAAACTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCAAACTTTAGCCTC
ACCACAGGGAAAAACAAGGTTCTTCATTATTATAAGTGAGACTCTGGCGGGGGGCGACTTGGCCGTTTTA
>spu.U11.1.gnl|ti|330798991
AAGGCCCCCTCCGAAACCCCGTGTAAACCTTTTCCCACCAAAAGGCTTCCCCCCCTTCCCGGTTGGAGGG
AACTCTCCCCCCCCCCCAGGCCCCCTTTTTTAGGGACCGGACAACACCCCAGGCCTTAACGGTTTGGGGT
TTGGCGGTTAATTGGGCTCCGGCCATTTCGGGATGCCCCTTTGGTGGAATCCCCCCAGTGCTAAGGAAAA
TCCGCTCGGCGCCTTCCCCTCCGTGCGCAATTTGGAAAGCCATCGTGCGGGCTCTTGGTTTTCCCCAGCG
GCGAAAGGGGATTTCTGCAGGCGAATAGTTTGTAACCACAGGGTTCCCCAGTCCCGACGTTGTAAACGAG
GGCAGGGAGATTCGAGTCGACCGCAAGTAGTCTCCACTTTCCGATAAAAAAGGCTTCTCCCGCTGCGGCA
CATGGGAAGTTCATATGGCTTCCCTGTCCGGAATCCCTATCAAGAGATTTCGGAAGCATAATATTTGTAA
CCTGTGGCTGTTAGTTGTCTCCTGCACTGACGCCCTAGTATTATACCACAGACATTACATTACACGACGT
ATCAGTGTGACGTATCTCGTAACACCCTCGCTAGGCGCGGATTGTGTATGGAACACGGGACCAAACCGTG
TTAGCCTTTCCATCTTGGGAAAAGCACTGTGTTCTTCATTTATAAATTCGTCCACCTTCTGCAGTGACCT
TGAAAATATCGGAGTGAATACTTCATCTGTTTAAATCGGTTATTTACAACCGTATTAAGATTTAAATATG
TATTTGTATTTCGTTATTCTTATTTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTC
AACATAAGTCTCCCTTCTCCAGTGACCTCGAAATCACCGGAGTGAATACTTTATCTGTTTAAATTGGTTA
TTTACAACCGTATCAAGATTGAAATATGTATTTGCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGTGCTGGTTTGTGTCTGTTCTTAAAAGAAACCTAGCCTCAAGAGTGGGGAA
ATCGCAAATTAGTAGTCCTAGTCAGAAGTGCTGCATTGTTGGTGCAGCCGAGGATCAAAATCGAAAGTGT
TAGGCATAGAGGGCGTAGTTCGTGTGTCAAATGATTTCTAAGCTGATGAACTACTCCCTCAGCCNCCCC
>spu.U11.2.gnl|ti|252663728
CGCCCTATCGATGGTACAGTAGTTCATCATTTTTTTAAAAGAATTGAAAATATATAATTTATTCACGTCC
TTCTCTGATTAAAAAGGGCTTCTGCCGCTTGTGGCACATGGGAATTTCATATGGGCTTCCTGTGCGGAAT
CACTATCAAGAGATTTCGGAAGCATAATATTTGTAACCTGTGGCTGTTAGTTGTCTCCTGCACTGACGCC
CTAGTATTATACCACAGACATTACATTACACGACGTATCAGTGTGACGTATCTCGTAACACCCTCGCTAG
GCGCGGATTGTGTATGGAACACGGGACCAAACCGTTTTAGCCTTTCCATCTTGGGAAAAGCACTGTGTTC
TTCATTTATAAATTCGTCCACCTTCTGCAGTGACCTTGAAAATATCGGAGTGAATACTTTATCTGTTTAA
ATTGGTTATTTACAACCGTATTAAGATTTAAATATGTATTTGTATTTCGTTATTCTTATTTCCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTCAACATAAGTCTACCTTCTCCAGTGACCTCGAAAT
CACCGGAGTGAATACTTTATCTGTTTAAATTGGTTATTTACAACCGTATCAAGATTGAAATATGTATTTG
CATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTCTTCATCTG
>spu.U11.3.gnl|ti|240544935
NNNGGGAGCAGAGTATTCTCTGTCACAGAGCAACTAAGTTTTACAGGAGAAGTTTGCTTACTATTTTCCA
CACAAATTAGCCTTCCATTGATGCATGACTAGCACAATCAATCAAAGAAGGACACACAAGGCCATGTGTT
GGTTACCTCATGCATATTTAGTAGCTTCTCATGAATATGCATATTTTATTGCAATGTGTACAGTTGTATG
TTGTGGCACTGGTTTTGTAACAATTTCATAGAATTCTTAGTATTTTTTGAATTATTTTATTATTGCTTGG
ATAAAAATGTGTAATTAATTATATGAAGTAATGAACATATGAAATTACAGTTTAATTTTGTATCAGTTAC
TCGAATTCTGCTGGTGTTTGAGTTCACTAACCATTAAACTCAAAGCATATTGGAAAGATAGCTGTCTTTC
AACACTCCAATCATTAAAAAGGGCTTTTGCTGCTTGTGGCACATGGGAAGTCCATATGGGCTTCCTGTGC
GGAATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGAACAGTGGCTGTTAGTTGTCTCTTGCACTG
ACGCCCAAAATTTGACCTTAGGACCTCTATGGAACCCTGCCAGGGAGCTAGAGTTGAACTCGAAAGTATA
GGCAGAAAATCAGCCTCTGGATTCACTTTTTCATTTGCGCTTTTAAAACAAATCTGCAGATGATAACTTT
CTTTCTATCCCAATTAAGCTTGGCTCGTATGAGTTCAAGGGGGTGAGATATGGGGTTCAAAAGGTCAAAG
GTCGTGAGGACAATTAAAGTGTTTAAATAGACGGAAATGTACATGTAGCAGTATCATGGTAATTTGAGAA
ATGGAGGTACATGTATCANAGGTTGTCACAAGGAAGAATGAACACCTTCAGATGAAGTGAATCTACCTAC
GAGTCAAGAGGTGAAAGGGTCAAGGTCATAAGTTTCACTTGGAAGAAACTGACAATACATTAAATGTATA
TAAAGTGACATCACTATGAAAGCAACCAACAGGTACATATTCCTACGTATATCTATTTTTGTTGTTGACA
TCCCTAGGTACATCCGCTGTGTCAAAAGGAAGGAATGTCTCATGCAACCAGCTTCAGGATTCATCTTTGT
AAAGGGGGAATAAACCTTAACAAAAAAATCTCATATTGCCGGAAAAGGAACTAAATGGTTTTGCACAAGG
GCCCGTTTCTAAAATTGGTTCAAAAACAATAAAAGCGTTATAACCCTAAATTGGGTTTTACTAAAAAAAA
ATTTTCAAAAATAACTTTTCTTTGAAACTTTAAAAGGACCCAA
>spu.U11.4.gnl|ti|240701343
CGATTCGCGGTAAGTAGTTCATCAGCTGGTGTTTGTCTTCACTAACCATTAAACTCAAAGCATATTCGGA
AAGATAGCTGTCTTTCAACACTCCAATCATTAAAAAGGGCTTTTGCTGCTTGTGGCACATGGGAAGTCCA
TATGGGCTTCCTGTGCGGAATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGAACAGTGGCTGTTA
GTTGTCTCTTGCACTGACGCCCAAAATTTGACCTTAGGACCTCTATGGAACCCTGCCAGGGAGCTAGAGT
TGAACTCGAAAGTATAGGCAGAAAATCAGCCTCTGGATTCACTTTTTCATTTGCGCTTTTAAAACAAATC
TGCAGATGATAACTTTCTTTCTATCCCAATTAAGCTTGGCTCGTATGAGTTCAAGGGGGTGAGATATGGG
GTTCAAAAGGTCAAAGGTCGTGAGGACAATTAAAGTGTTTAAATAGACGGAAATGTACATGTAGCAGTAT
CATGGTAATTTGAGAAATGGAGGTACATGTATCAAAGGTTGTCACAAGGAAGAATGAACACCTTCAGATG
AAGTGAATCTACCTACGAGTCAAGAGGTGAAGGGTCAAAGGTCATAAGTTCAACTTGGAAGAAACTGACA
ATACATAAAATGTATATAAAGTGACATCACTATGAAGCAAACCAACAGGTACATATTCCTAACGTATATC
TATTTTTGTTGTTGACAGTCTCTATGTACATTCTGCTGTGTCACAATGGAGGAAGTGTCTCCATGNCATC
AAGCTCAAGGATTCCATCTTTGCTATAGTGTGAGTATACTCTTAGCATAATATATCTN
>spu.U11.5.gnl|ti|257943862
NNNNNNNNNNNNNNNNNNNNNNTTTAATTAGGGGGGCACNNNANNNNNNNGGGGGGTTTNNAAAAAAAGG
AAGGAAANGGGNNAAAANTTTCCGCCTAAGCCTTCCTAAATCTCCGGGGTTATCCTGTCCCAGAAGGGAA
GGGAAGGTGTTGATTCCGGAAAGTGGTTTTAAGGGGGAGGGGGAAGTAAGGTTTTGTATTTTGACTGACC
GCTCAGAAGCATTCGAGTCTANGATAGCATCGCAGAGTTGTTTAATCCATTACTCGTCAATGATATCGAT
AATTTGGAAGATTTCTGCAGATATTAAAAAAATCAGTTTAATATTTCTAATAGTATGACAAATCAAGACA
AATGATCATATTAAAGTTGAATTTATAACCATTTATTAAAAGATATGAAAATATATAATTATGTAACGTC
TTCTNTGATAAAAAGGGCTTCTGCCGCTTGTGGCACATGGGAAGTCCATAATGGGCTTCCTGTGCGGAAT
CACTATCAAGAGATTTCGGAAGCATAATATTTGTGACCTGTGGCTGTTAGTTGTCTCTTGCACTGACGCC
CTAGTTTTATACCAAAGACATTAGATTATGAGACGATTCAGTGTAACGTACTCTCGTAATACCCTCCTAT
ATGCGCGTATTACTGTATGAAACTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCAAACTTTAGCCTCAC
CACAGGGAAAAACAAGGTTCTTCATTATTATAAGTGAGACTCTGGCGGGGGGCGACATTGCGTTTTACAC
CCTGGCCTGGACATTTTCCCGGTAAATAGCAATGAAACTGCTTGAATGAGTCTAATGTACGCTCCTCGAT
CGGGCGCGCCAGTTCCAAATCAAATGGTACATGCACAGACGTACGCCGTCGATGCAGCATTATACACATA
GAACTNTACTAGTCGGGNNNN
>spu.U11.6.gnl|ti|298122138
AAAAATGTGTAATTAATTATATGAAGTAATGAACATATGAAATTACAGTTTAATTTTGTATCAGTTACTC
GAATTCTGCTGGTGTTTGAGTTCACTAACCATTAAACTCAAAGCATATTGGAAAGATAGCTGTCTTTCAA
CACTCCAATCATTAAAAAGGGCTTTTGCTGCTTGTGGCACATGGGAAGTCCATATGGGCTTCCTGTGCGG
AATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGAACAGTGGCTGTTAGTTGTCTCTTGCACTGAC
GCCCAAAATTTGACCTTAGGACCTCTATGGAACCCTGCCAGGGAGCTAGAGTTGAACTCGAAAGTATAGG
CAGAAAATCAGCCTCTGGATTCACTTTTTCATTTGCGCTTTTAAAACAAATCTGCAGATGATAACTTTCT
TTCTATCCCAATTAAGCTTGGCTCGTATGAGTTCAAGGGGGTGAGATATGGGGTTCAAAAGGTCAAAGGT
CGTGAGGACAATTAAAGTGTTTAAATAGACGGAAATGTACATGTAGCAGTATCATGGTAATTTGAGAAAT
GGAGGTACATGTATCAAAGGTTGTCACAAGGAAGAATGAACACCTTCAGATGAAGTGAATCTACCTACGA
GTCAAGAGGTGAAGGGTCAAAGGTCATAAGTTCAACTTGGAAGAAACTGACAATACATAAAATGTATATA
AAGTGACATCACTATGAAGCAAACCAACAGGTACATATTCCTAACGTATATCTATTTTTGTTGTTGACAG
TCTCTATGTACATTCTGCTGTGTCACAGTAGAGGAAGTGTCTCCATGCAATCAAGCTGAAGGATTCTGAT
GAACTACTGTACCATCGATA
>spu.U11.7.gnl|ti|299077911
NNNAAAACTTTTTNNNNNNGNCCGCTAGCAGTAGTCATCAGCATATTCATGATCTAATGAATATGCATTT
CCGCATGGTGTGTGTTTTATATCGCATTTGCTTCGCTCATATTAAAGGAGAGAGAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAGATGAAAGAGATGGATATTGAT
GTGACCAGTCGAGCACGCTTCAATGAGCATGCATATTCATGATGCTAATGAATATACATTTCCACATGAG
GTGTGTTTTATATCACATTTGCTTCGCTCAAATGAGAAGAGAGAGAAAATGGGAGAAAGAGAGTGAGATA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGTATTGTGTATGTATTGTGACAGTCGAGCGCGCTTCAAGAAATGCATATTCATGAGTTTCTAATGA
ATATGCATTTCCGCATGAGGTTTGTTTTATATCACATTTACTTCGCTCAAATGAATAATCTGATAAATTT
TGTGAAGAATTTTCTGGCATGATATTTAAAAAAAATCATGTTTATATATTTCCTATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAAAGTTTGAATTTATTAACCATTTTATTTAAAAGATATTGAAAAT
ATATAATTTATGTAACGTCCTTCTTTGATTAAAAAGGGCTTCTGCCGCTTGTGGCACATGGGAAGTCCAT
AATGGGCTTCCTGTGCGGAATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGACCTGTGGCTGTTA
GTTGTCTCTTGCACTGACGCCCTAGTTTTATACCANAGACATTAGATTATGAGACGATTCAGTGTAACGT
ACTCTCGTAATACCCTCCTATATGCGCGTATTACTGTATGAAACTTAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTAATACTGTCCTTATACAGCC
>spu.U11.8.gnl|ti|299077986
AGTGTGTTTTATTCACATTTGCTTCGGTCAAATGAGAAGAGAGAAAAATGGGNGAAAGNGAGTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNACAGTCGAGCGCGCTTCAAGAAATGCATATTCATGAGTTTCTAATGAAT
ATGCATTTCCGCATGAGGTTTGTTTTATATCACATNTACTTCGCTCAAATGAATAATCTGATAAATTTTG
TGAAGAATTTTCTGGCATGATATTTAAAAAAAATCATGTTTATATATTTCCTATANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAAAGTTTGAATTTATTAACCATTTTATTTAAAAGATATTGAAAATAT
ATAATTTATGTAACGTCCTTCTTTGATTAAAAAGGGCTTCTGCCGCTTGTGGCACATGGGAAGTCCATAA
TGGGCTTCCTGTGCGGAATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGACCTGTGGCTGTTAGT
TGTCTCTTGCACTGACGCCCTAGTTTTATACCAAAGACATTAGATTATGAGACGATTCAGTGTAACGTAC
TCTCGTAATACCCTCCTATATGCGCGTATTACTGTATGAAACTTAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCCTTCAGT
GCTCAAACTTTAGCCTCACCACAGGGAAAAACAAGGTTGAGAACTACTCCTATGCCNNNNAAAAAGTTTN
N
>spu.U11.9.gnl|ti|306641471
CTATTTTCCGCATAGGTAGTAGNTCATCAATGACTAGCACAATGAATCAAAGAAGGACACACAAGGGCCA
TGTGCCCCCTTTTATCATGCATATTTAGTAGCTTCTCATGAATATGCCCCTTTTTATTGCAATGTGTACA
GTTGTATGTTGTGGCACTGGTTTTGTAACAATTTCATAGAATTCTTAGTATTTTTTGAATTATTTTATTA
TTGCTTGGATAAAAATGTGTAATTAATTATATGAAGTAATGAACATATGAAATTACAGTTTAATTTTGTA
TCAGTTACTCGAATTCTGCTGGTGTTTGAGTTCACTAACCATTAAACTCAAAGCATATTGGAAAGATAGC
TGTCTTTCAACACTCCAATCATTAAAAAGGGCTTTTGCTGCTTGTGGCACATGGGAAGTCCATATGGGCT
TCCTGTGCGGAATCACTATCAAGAGATTTCGGAAGCATAATATTTGTGAACAGTGGCTGTTAGTTGTCTC
TTGCACTGACGCCCAAAATTTGACCTTAGGACCTCTATGGAACCCTGCCAGGGAGCTAGAGTTGAACTCG
AAAGTATAGGCAGAAAATCAGCCTCTGGATTCACTTTTTCATTTGCGCTTTTAAAACAAATCTGCAGATG
ATAACTTTCTTTCTATCCCAATTAAGCTTGGCTCGTATGAGTTCAAGGGGGTGAGATATGGGGTTCAAAA
GGTCAAAAGTCGTGAGGACAATTAAAGTGTTTAATTATACGGAAATGTACATGTAGCAGTATCATGGTAA
ATTGAATAATGGAGGTACATGTATCAAAGGTTGTCACAAGGAAAAATGACCACCTTCAGATGAACTGAAT
CCTACCCTACAATTCAAGAGGGTGAAGGGTCCAAAGGTCATAAAGTTCACCTTTGAAAAAACCTGAACAT
AACCTAAAATTGTATTTAAGTTGAACTCCACTACTGAACTCAAACCAACGGGAACATATTCCCAACGAAA
AACCTATTTTTTGGTGGATGACAATCTCCTAATCAAATTCCGGCTGTGCCCCCAAGGGAAGGAAATTGTT
TCCAATGACAATCAAGCTCCAAGGAATCTCAATCTTTTCTATATATGGGGAATATTACCCTTTAACCTAA
TTATAACTCCCAATTTGGCCCGGACAAAAGCAATTTTATATTGGTTTTTGTCCACCATAGGGCACCTGAT
TTCATAATAACACTTGGTATAACATAAAACGGAGATTCAACAACCTGTGTCTTAGAACTACCGCGAATAG
TGGTGCCACTTTACTCTACGTAAATATACCAAATTTTTTCACTCAAATATTATACGCCATTCTTCTAATA
GA
>tni.U11.1.chr21
CGGGTTAGGGGTCAGAGGTTAAAGGGCGAGCAGAAAGCCAACCAAAGTGAAACACGCTGAAACACAAACC
AACCGTGATGAAAAAGAGTCTTTGGAAGACCAAAAAAAAGCTTTCACACATTCAGTCGGCCGGTTGAAGT
GCTCCCAAAGCAGCAGCATTCAAGGAAGGTTCACGCGGAACTAACAACAGAATTTAAATGGCCCCGCAAA
GCCTGTCGGGCTTGTTTACAGTTGGGCACCTGCTGTAACCAGTCAGCCACAGAATAAACAAGCGACACCA
AGCAGCAGTTTCAGTCTGAGCCAGCTGGTGGACCGGAGAGAACGCCTGCGCTGATCCTTTATGGATACAG
GTATTTTATGGTGTCGGCGCTTCGTTTCCTCCATTAAAAAACTCTTTAAAACAAACATCTACTCACGTTG
CCAGGCGGCTCCTCAATCAAAATGGTCTTCTCAGCCTTAGGAATTGCCTTTTAATCCATTTTTAACAGTG
CAAGTCACAAAAAAAGTTGCTTGAACCAAAGTTTGACGGCAAGCCGTCTACCTGGACGTCAAGGTAGAGG
AAATACATCAGGTGGCTGCGACCAGGGGGTTGGACTTCCGGCCGAAACCGCAACTTTAAAGAGAGCTACT
GTTGTCATTTTTAGTTTTATTTCTAACAGGCGTAATGTTACCATGGCGACAGCTTACCGTAAACATAAAG
GCGACTTTATCTACAGGCAATAAAATCAAAGTTAAACTGTGCGTCTGTTTTCAAATTCGACGTTGATTGT
AAAGTGACGTCATCAACCCGCCCCAAAACTACCCATCATGCACCTCTCTTGCCAAACAGCTACTAAAAAT
GTGTTCAAACGCGTAGCAGTATCGCTAAATTTTAGAAATAATCGTCTTTAGGTCAATGTCAGACACTAAG
TTGTTGAACAACTCTAGCGTTAATATTTAAAACTCTGACTAAAAAGGATGTTGTCGTCGACCAGCCCGTG
ACGTGTTCAGGGGCCCTGGTAAAAAGGGCTTCTGCTGTGTGTAGCACAGGAGGGGTGGTGTTTACCACTC
CTCCTGCGGAATCGCCATCAAGAGATTTCGGAAGCACAATTTTTATAACTGGGGCTGCTGGTGATCACTC
GTCCTGGCGCCCCGAACCTCCATGTGCAAAATAATACAGAATGTTGGCGCTTTGGTCCAGGTTTCACCAC
GATGGCGCGTTCGGTGTAGATTCAGTCGTCTTCACCGTAACCGCGCCGTGGTCGTCTCTGATTTCGAACC
CCCCAGATCTCCTAAACGGGTTTAATAACTGTTCAATGGTGTATAAACAGCATCTCTGTCCAGCCAGATT
CCACCTATAGACTAAAATAAGATAAAATAAAGGTTATTTTCAGCCTGCACCTCCGCGAGCGCCGCAGCAG
GAAGTCAGGACGTATGAGCCGAAGCGCGCATGCGCAGTAGCTCCTCGCGATCTAGGGCCGCGTTTCTCCC
CATTAAACGGTAAGTGCGCGCCGTACTTTAATGTTTGCATTTTAATTAATTTATTTTTAAATCCATCTCA
TTCTGAACCGCCGGCTCCCGGCGCGATTACGACCGCGGTTCCGGGCGGGCGGCCGGGGTAACGGGAGGAG
GGGGGTTCTGCCGAGCGATCCGTGAGAATGGAGGGGCAACGCCGTCGCCGCGCCGTTGTTAGTCGTACGT
GCCGCCGCACAGGGAGACGTCATTTTGAGGGGGAGCGGAGAGTTAAAATCCAGAGTTACGAAAGGACGTA
CGGTTCAGAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCAACGGAACGTTGTGGGCTGTTAAA
ATGCACATCTTTAGGCGACATTTTAGCACG
>tni.U11.2.chr15_random
GGCGTGGGGGTGGGGAGACGGGATGGAAGCAGGCAGACAGACAGACAGACAGACAGACAGACAGAGCGCA
TGGAGCGCTGCCGTTCCAAAGGATCTGGGTCACGTCACCCAGAAGTTATCCGACTATCGTCTGCTGCAGC
CTGGATCCAAAACATACGGGCAGAGTTTCCAGAACGCATCACAGCTGCGCATCCAACTGAACCACAGTTC
TAAACGGGCCCGTTATCGATCTCAACTCCTCTGCAGGATGTCTTTTATCCCCTGGATCTGTTCCTACCAG
CGCTGGTGACACAGATCCAGTCAGATTTGTTCGCCGGAATCCAAAGGAACATCATTCTGTGTGACTCCAA
CTTTTTTTCCCCCAACTCTCCTGCACGGCACATCTTCAGGAAGCTCTCCGGCATGGGCGTGTTCCCTGGA
ATGAATTCCTAATCTGCCGTTTTATTCTCATCAGCTTCAGTGGAACACACGCGGGGGCGCCCGTTACATA
ACCGCGCCTATTAAACGTTAGACGTGATGTATGGATCAGCGGGACCACATGTCAGGCAGGACCCATTATG
GAAACAGAACTGCTCTTAGGATGATGTGTCATGAATAAATAAGGCGCTCAAACGCAGCGCTGACCTTTCA
CTGTTCGTTAAGTGAATGCATTCAGCACTTTAGTCCAGGCCATCCTTCATCTCGTCCTCATCTCATACCT
AAATTAAACAGGAAAAAAAAAAAAGAGAACCTGCCAGTCGTGCTGCGGACTCAAGCGATGTAACAAACAG
ATCCAATGACACGAGGAGAACTGGATGCTGCACGTCAAGCAGTCATTTTGAGCTTTGTGGCGATCTGAGC
GCTGCTAACGAAACACAGCTGATCGCCTCTGTCCTCAACGCACACAAGTAAGCAGAAAAGAAAAAAACTG
TGTGACACACTTAAGAAACAGATCCCACATCAACACAGTCCTGCCCACTCCTGCTAGATTCTGGCTTCTT
CTAAAAAAGAGAAGAAATGAATGAAGGGCATCTGCTGTGAGTCCAGTCATATTTGTAGTCCTGTGGTGCA
TTCATGGACTACAAAACCTAGCTGACTTAAAATTCATGCGTTTTACCCTGGGGTTTAAAGGGTTAAACTG
AACTGCACACAGCAGTCAGTTTGTTACTGTTTTGTTATCCACCACTGGGGGGGGGGGGGACGACGACGAC
ACACAAAATTGCCCCATTTCGTCTGAAAGGTCCTACTCCCTGTAAACGCATCGCAGTATTGGGTCGCCTG
ACAAAAGCGCTGTGAAGCATCGGCGTCGTGGCAGTGGCGGGCGTTGCGTGACGGCACGGCACGCTATCTG
AGAAAGGATGAGTGGGGGGGGGGGGAATCTTAAAAAAAAAAATAAAAAAAACCTGGAGCAGATCTAGGGG
AAGACTTTAGCAGTGACACAAATCCTGACAAATGTCTTTGAGTGGGAGGGAGGCCTCTCTCCCAGATGGG
AAACGACCGGATGGGGAATGGGTGGGTTTGGTTTACTCGCTGTTCCCGGCGTTCTTTTATTCTCATTTGT
GTGATTTATTTAGCCAAGGTGCTGGCGCGTTTCACTCCAACGCTGCTCTGTAATTGAGTTGCTGGAGGAG
ATGGCTGCAGTCCTAATTGGCCACACGTGGCTGTTGCGCCGCTGGCCAATCTACCTTTACGCTGGAGGAG
CCGGAGACGAGGAGGACGAGGAGAAGGATGCCGTCCTCCTTGACGAAATACTGGCACAACAGAGGGGGGG
ACGGCACGGAGCTCTTCGGGAAGATGCGGTTTGCTTGGCCGCCTCACTTTGCGAGAGGAGAGCCAGTTTA
CGGAGCAATAAAACATCCGGGACTAGAGGCAAAAGGCTGGAGAGGGCAGGAATTTTACCTCCACGGCAAC
AGCCCGCAGGGGGCTGGTTTAGGCTTTAAAAAAAAGGCCAATATTATCCTTTTTAGTGACTACTGACTAG
GGTGGGAACTGCTCAAGGCGATGCAGGGACTAAGCAACACTCGGATAAAAAAAATATCGACCACAAAATA
CTGATTTTACCGGCATGACCTCCCAGAGATCGCACATTCCCACTGAGTTACCTTGGCAACCTGTGTTTTT
ATCCCCCCCCCCCCCCCACCCACCTCCAACAGTGAACAGAAAGATCAATCTGCCACCATGATGCCTGCAT
GTTCACCCGCCTGCTGTCCGGTTATCCTCG
>tni.U11.3.chr2
GCGCGCTGTCACTCGCTGGTCCAAATGTTTCATTTCTTTCTCGGCTATTAACCCGTTCTCATGTTGCTCA
GGTACCCAAAACGACAGCCAAGATGAATAAAAATGGAACGACACATTTAAAAGCTCTGCCAGGAAACCTA
TCTATTTGTCTGTCTGTCTGTCTGCTCCTACCCTAACCAACACAACTACCCCTGACTCTAGTCAGGGGTT
AGTTGCGTGGCAAAAAGAACACACACACATACAAACACACTACTTCAGGGCTGTTACTCTATCATCTGTA
TAATTAAGGTGCTTTTTCTCCTGAATATTTTAGCAAAAGTCCCTGCAATAGTGCAGCAACAGACCTGACT
ATCCTCGCTGTGAACACACTTTCCTTAAGCGGAGAAAAAAAAGAAAAAACACAATTGTCCTTACTACTAC
AGTGCCTTGTGTGAGTTTTTCTTTTTCCCGCCAGGCAGGTCTTGATGGGTTGCCGGGAAATAATTTTTTT
TGACAGGTAAATGGTGATATCACTTGTCTTGTATACATAATGTAAAAATGACATTCTCTCACCCTGTGTC
GGGCAGATTTGGTGTGAAACCCAGAGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTAT
AGCAGATGGAAGAGGAATAATATCCAAGACAATAGTGGCAGGGGGAGCAGTGGAGGGAGTGAGTAAGATG
GGGTTCCTTCAAAGATTGATGAGAGCTGATTCTGCGATGGATGCCTTCTTGTATGAGGCCAGAAAGCACA
ATACGGTTATTCACGCCACCAGCACGTTATTGCTGCCAGTACTTGGCTGATGTCTTATGTTGCAAGAGCA
TGAAATCAAGTGATGGCAGCAACACATTCAAATGAGTGACTGGAAATTTTTGCTTGTTTTTAAAGGAGTC
AATTATTTCTATTTTAGGAAAAGCGTCAGTGATCTAACCAGTCTGTAACCGACAAAATCAAACATTTTTG
GAAAACCAATCCATGCATATAGTATCATTTTAAAAGGCCCATTGTTATTTGGGTTCTAATGACTTGAAAC
CAGATATTTGTCTAAAAAATGTTCTTTTTTTTTGAGCCCAAAGAGGGCAACAGAGAAAGCAAAAAGGGGA
AGTTTACAACTGCGCTTTGCCGTTTTTGTCTACTTCTGACAATTCCTCAACGCCATCAAGGAGACCAAAT
ATGTTTCCTCCCTCTCTAATTACCAGCTGTTATGGTTGAGTCTTGTTTAGTTGTCCTCATAGCAAATAAA
CTCGCTCTGTTTTTGTTTCAGGGGATTTCTCAGCTGCTGAAATGTGCCGCCGAGCGAGGGGGACATAGCT
GTCCGGGACTAAGGCGTGAGTGGGCAGGACGGGACGATCGGGTGTGCTGGGAGGATACATGGCTTGTGTG
CCTAAGTTCACAGTTCTGACTGAATTGACACGATCACAGAATCTAACGTGAGATTTTTTTTTAATCACTA
AATAATAGTAAATATCTGTTGAATTCTATTTTGTTGGCATTTGACCTTGAAGTATAAAGACACACACAAC
AGCAAAACTACTCACGTTTAAGACACCAACAGAACTGGGTAATTTTGTTATTAATAAAAAATAGAATTAC
CGAGTCATATTGTGATTAAAAGCCATGATTTCTGTTGCACTGAACTTTTCAAACAAAGTGAAGAAGTGAA
ATTGCATCGGTCAGTCTCTGCTGTTGCTCGTCTGGGGGAGTAACAGACCGTGCACACACTGCTGTCTCTC
CCACACGCACACATGCGCGCATGGCCGTAGATTTGACCCACGTTCCCACCGCAGCAGCAGGCCTGCGAAC
AAAACAATACAACCCACAAATCAGAGAGAAGCACCCCTGTGAGGCTGCCGCCGCATGAGTTCTGTGCGGC
GCAACATCGTCCGGGTTCCTCTGTAACAGTAGGAAATAACACCACCCAACCTTTACCCATAAATCCCCAC
CCGTCCCCCCTCTCATGGCTGGTTGTCCTCCGGCCTCGGCCTGCTGCACGACAGCAGATTTGAGGGGGCG
TTGTTGTGGCTGGATGTAGTGAAAAAAAGGGATGTTGGCAGTGGGGAGGAGGCTCTGCTTTGTCTCAGGG
GACTGTGCTACAGCATCGACCCTCTCAAAATTTAGAATTTTGCACATGAAATGTGATCTAAATGATCGTG
GGGGTCATTTTTTTTTTTATATTTCTAGAT
>xtr.U11.1.scaffold_98
TTCCTACTGTGTCTCATACCACATGGCACTTATATATATATATATACATATATGTATTTATTGTATTTAT
TTATTATATCACTTGTCCTCCCTGTGTGTAATTGTGTATTCTGTAAGACTGTACAGCGCTGCATACCCTT
GTGGCGCTTAATAAATAAAGTTATACATACATACATACATATAACCAGCGAGCCAGTCTGAAAGCGATTT
ATACACCACTGAAATTGTTTAACGTATATCTGAAAGTTGCAACGAACTGGATTCTAACAAGTTGAAATTG
TAACCCTCCTGTGTGTATGTATATATGTTCCAATATACCTAAATACATAATACCGTGTGTGAGTCTCACA
CATGAGTGAGATGATTGGCACGGTACGTTACGTACAACCTGCTGCGCACTAGCACTTGCTGCACTGCTTT
GCCGGGAGAGTAGGGACACCAAAGTGAGATACCCGGGAATCCCATACGTCCCGATTCTCGCAAGGAAAAC
CTGATAAAGCGACAATATAATCACGGAGTCCACATACCAATCTCTGCGCTTTAAGTTCTGCTGTCTCTCT
CCCTGTTGGCGGACGTTACATCACACATTCTTTCCGCTCATGCGCAAATTCTTCTTCCCCCCCACACTTT
ATTTAACGGGAACAATCCAAAACTCAGAATATGCGCAGAAAACCGAAAAACATGGCTCCCAATACGCCGA
CCTAAACAAAAATTGCACCTTTTCTCGCGATTTTAAATGTAGCTGTGGACGGGAATTGGCAGTCCCATCA
TCCCTTCTATTTAGCATAATTTGCATATGGCCCTCGCTTGGCAATAAAATTAAAATGTAAAATACTGTTT
GTTGTATTTATGAAAGTGAATTATCTTATATTTAGTGTATCCCGATCTAGCACTCATATACAATTATAGA
TATTTCCCTAACCGAAACTTTGTCGCCATATGTTGTGTAAGGGTTATGCTGCCCCTGGAGGTTGCAGAAA
CCAGATGATAGTTAAAAAGGGCTTGTGCCGTGTATGGCACATTGCGGGTCTCCCTTGTGGAGGACTGCAG
TGCGGAATCGATATCAAGAGATTTCGAAAGCATAATTTTTGTAAACTGGGCTGCTAGAGATCGATGGTCT
GGGCGCCCAATAATTAAGTTCAAAAACAGAGAAAATGAGGATGTATCAGCAGGAATAAGCATATTGAAGC
GTATTAATTAATACACTGTGTTCCGCAGGGTTATTTTCCCGGCAACGCCTAGTGATCACGCAGAGGACTG
ATACTTTTTTTTATTTAAGAGTATCAATGTATGTAATACTGCCACATGCCTACAATAAACAAATAACAAA
GCCGGGTTAAGTACTCAAAATCTCTCACTCGCTCCTTTTTTAGCTGTTTCGAAGATGAGAGGCTGAGAGA
GAGATGAGAGTATAATTCACATGATTAGCCAGTTGCTGCGAGAGAACACACAGAATGGCCAAAACTCCAC
CCCCTTCCTTTTCATGCAAAGCACCAGGAGTCCTGGTAAAAAAGTCACAGGCAATCTTATTCAACATTAC
CTTAAATAATGTCTAACAAAAGTAGAAGTAATTGAAGGTGAAAACATTTCACACATTAGAAAGATACTTT
AATCAATATAGATGACTTAGTGCGTAGCGCACAGCTCCAGGGACGGCGGTACTGTTATTCACACAGAAAA
GTGCCGCACCTCCCCCTCTCCTTCTCCTTCTCCGTCCACTTGACGCAAGCACGTACGCACACACAAAAAA
TACAACCTTGTCTGGACGCCAAAACACAGAATTTGATGGGAGTTTTGGGTTTAAATAACACCTTTTGGTT
TAATTATTGCCCAGGCTAGCTGCTAACTCCTTAAGTATATGCCTATATCACAGGTCTTTTGCCCTGTGTT
CATCTGTAAACTTTTCTTGCGTTTAGGGTTGCCACCTTTTATGAGAAAAAATACTGGGCTTCCGATATTT
TTATCTTTTTTTTCATATTAATAACATTGGGATCAAGCATAATTTTTACCGGCCAGGCAGGTAAAATAGC
AGCCAGGTGGCAACCCTACTTTCTTCTTCGTCCCTTCCATGTCAGTACGCAGGGGCAGTATTGCCCCCAT
AGCTAGGAGGTAGGACCTATATACCAAAGCCAATCAAAATTAGCCCTTACCTATAAGACCATGTGACTTC
CTCCTCACCACTGTTATTTTTTGTCCTACT

---

Local Alignments*

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.1.chr3L	653	708	ATENSPM11	2756	2811	c	0.80	0.80	231

TCTCTTCTACT--TTTTTGTTTTCTTATTCAAAAGGATTTTTTTCAAAA--ATTTTTAAA
|||-||||-||--|-|||||||||||||-||||||----|-||-|-|||--||||-||||
TCTGTTCTGCTCCTCTTTGTTTTCTTATCCAAAAG----TCTTCCGAAATCATTTCTAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.2.chrU	644	751	BURDOCK_I	5299	5405	c	0.77	0.77	266

CTCTTCTACTTTTTTTATCTTATTCAAAAGGATTTTTTTTTACATTTTTAATAATAAA-TTTTAA--AT-
||||||||||-||-|-||||-|-|-||-|||-----|--|||||-||||||||-||||-||||-|--||-
CTCTTCTACTCTTCTCATCT-ACTTAAGAGG-----TAGTTACAGTTTTAATACTAAAGTTTTGACAATA

-TTAAATA---CAATTTAAATTTTATTAATGAAGCCTTCTTTCTGA
-||||-||---|||||--||||||||-|||-|||--|||-|||-||
ATTAAGTATAACAATTATAATTTTAT-AATAAAG--TTCATTCAGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.3.chrM	10	171	TAG3N1	507	667	d	0.74	0.74	263

AAATAATTTTATTTTTTATTAAATTTTAAATTTAATTT-ATAATT-ATTTAATATTAATAAGATTATTTT
||||-|||||||-||||-|||||--|--|||-||||||-|||-||-|||-|||||--|||-|||||||||
AAATGATTTTATATTTTGTTAAACAT--AATATAATTTTATATTTGATTAAATAT-GATATGATTATTTT

-ATTCTAGTTAAATATTT-----TATTATTATTTTATTTTACATGTAAAT-TTTTGTGTGAATTTTTATT
--||-||------|||||-----||-||--|-|||-||||--||--||||--|-|-----|||||-||||
TGTTTTA------TATTTATAAATACTACAAWTTTTTTTTTTATA-AAATACTCTA---AAATTTCTATT

AATTTTAAAA--ATTAA-TAATTTTTAATTTATT
|||-|||||---|||||-|||-||||||-|-|||
AATATTAAATTTATTAAATAAATTTTAACTAATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.3.chrM	910	991	GYPSY47-I_AG	524	608	c	0.77	0.77	231

AATTTGTGCAA-ATCAATTTAAATTGATAATAATTATTTATTAATT----ATTTTTTTTTATTTATAATT
|||||||-||--||-|-|-|||||||||--|-||||||||||||||-----|||||||||-||-|-||||
AATTTGTCCAGGATTATTATAAATTGATTTTGATTATTTATTAATTTTATGTTTTTTTTTTTTGAAAATT

ATTAATAAAAATAATTT
-||-|--|||--|||||
TTTGA--AAATCAATTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.3.chrM	1183	1351	SKIPPER	962	1118	c	0.80	0.80	346

AATTATATATAAAAGTTATTGTGGAATAACTATTTTAAATATGTAATTAGAAATGAAATGTTAATCGTTT
||||||||||||||-|||||----||||--||-|||||-|-|-|||||-----|--|||-|||-----||
AATTATATATAAAATTTATTA---AATA--TAATTTAATTTTATAATT-----T--AATTTTA--TAATT

TAAAATATATCTAGTTT--TTTAAGAAATGAATTTAATTTAGCTTATTTATTTTA--TTAAGTTAATTTT
||||-|||||--|-|||--||----|-||-|||||||||||--|||||||-||||--||||-||||||||
TAAATTATAT--AATTTAATT----ATAT-AATTTAATTTAATTTATTTAATTTAATTTAATTTAATTTT

TTAATTTAATAATTAAATA-AAGTA-----ATATTTTAA
|-||||-||||||||||||-|||||-----||||-||||
T-AATTGAATAATTAAATATAAGTATTAATATATGTTAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
aga.U11.3.chrM	1454	1560	ATHATN5	249	369	c	0.75	0.77	213

TAAAAAATTATTTAATTTAAATTAAA------TTA--TTTATTAAAATTTA----AATTTTAATAATAAA
|||||||||-||+|||||-|||-|||------|||--||||-||||||||-----||||||------|||
TAAAAAATTGTTYAATTTTAATCAAAAATCGTTTAATTTTACTAAAATTTGGTTTAATTTTG----CAAA

A-ATTTAGTAATTATGATAAA----ATTAGTATATAAATTT--ATAT-AAAGTAATT
|-|||---|||||||-|-|||----|-||--|-|-|||||+--||||-||+||-|||
ACATTGTATAATTATAACAAATATAACTA--AAANAAATTYGGATATTAARGTTATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.1.SCAFFOLD255372	1971	2168	BOVTA	7	208	d	0.88	0.89	1191

CCCTGGAGGCCCAGACG-TAAAGAATCTGCCTGCAATGCCGGAGACCTGGGTTCGACCCCCGGGTTGGGA
||||||-|||-||||-|-|||||||||||||||||||||-||||||||||||||||-|||-|||||||||
CCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCGATCCCTGGGTTGGGA

AGATGATCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAGAGGA
||||---||||||-|||--|||||||||||||||||||||||||||||||-||||||-||||||||||||
AGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCC-ATGGACAGAGGA

GCCTGGCGGGCTGCAGTTCATGGG-TCTCAAAGAGTCGGATACGA----GCCACTAAGCACACA
||||||+|||||-||||-||||||-||-||||||||||||-||||----||-|||||-||||||
GCCTGGYGGGCTACAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTAA-CACACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.3.SCAFFOLD275400	1833	1979	BOVTA	64	208	c	0.84	0.85	850

TGTGTGCTAAGTCGACTCAGTCATGTCAGATTCTTTGTGACCCCATGCACTGTAGCCCACCAGGCTCCTT
||||||-||-||||-|||||||-||||-||-||||||-|||||||||-||||||||||+||||||||||-
TGTGTGTTA-GTCG-CTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGTAGCCCRCCAGGCTCCTC

TGTCCATGGGATTCCCCAGGTAAGAAAACTGGATTGGCTTGTCATTTCTTGCTCCAGGGGATCTTCCTGA
|||||||||||||--|||||-|||||-||||||-|||-|||-||||||-|-||||||||||||||||--|
TGTCCATGGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAA

CTCATGG
|-||-||
CCCAGGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.5.SCAFFOLD275400	1791	1937	BOVTA	64	208	c	0.84	0.85	850

TGTGTGCTAAGTCGACTCAGTCATGTCAGATTCTTTGTGACCCCATGCACTGTAGCCCACCAGGCTCCTT
||||||-||-||||-|||||||-||||-||-||||||-|||||||||-||||||||||+||||||||||-
TGTGTGTTA-GTCG-CTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGTAGCCCRCCAGGCTCCTC

TGTCCATGGGATTCCCCAGGTAAGAAAACTGGATTGGCTTGTCATTTCTTGCTCCAGGGGATCTTCCTGA
|||||||||||||--|||||-|||||-||||||-|||-|||-||||||-|-||||||||||||||||--|
TGTCCATGGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAA

CTCATGG
|-||-||
CCCAGGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.1.SCAFFOLD255372	6	118	BOVTA	96	208	d	0.85	0.86	626

ACGGCAACCCACTCAAGTGTCCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGCGTGCCGCAGTCCA
|-||||||||||||-|||-|-|||||||||||||||||||||||||||||||||||+|-||--|||||||
ATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGYGGGCTACAGTCCA

TGGGGTCGCA--GAGTCAGAAAAGACTGAAGCAACTTAGCACGCA
||||||||||--|||||-||-|-||||||-||-|||-|-|||-||
TGGGGTCGCAAAGAGTCGGACACGACTGA-GCGACT-AACACACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.1.SCAFFOLD255372	1775	1862	CHRL	1	96	d	0.71	0.71	251

GAATTTCTCTGGCAGTCCAATGTTTTATATGCAGAGCTGCCACTGTAGGGGGCGCAGGT---------GG
|-|-|||-||||--|||||-||--|-|-|--|---|||-|||-||-|||||||-|||||---------||
GGACTTCCCTGGTGGTCCAGTGGCTAAGACTCCACGCTCCCAATGCAGGGGGCCCAGGTTCGATCCCTGG

TCCGGGAACTAGGATCCTGCACGCTGC
||-|||||||||-||||--||-|||-|
TCAGGGAACTAG-ATCCCACATGCTAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.3.SCAFFOLD275400	573	854	BOV2	270	551	c	0.81	0.81	1660

GTTCAGTCGCCCAGTCATGTTTGACTCTTTGCAACCCCATGGACTACAGCAGGCCAGGCCTCTCTCTCCC
||||||||||-|||||||||--||||||||-|-||||||||||||-|||||-||||||||||-||-|||-
GTTCAGTCGCTCAGTCATGTCCGACTCTTT-CGACCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCA

TCATTATCTCCCGAAGTTTGCCCAAGTTGAAGTTCATTGCATCATTGATGT-GTCTAACCATCTTATCCT
|||--|-||||-|-|||||-|-|||--|-|-||-|||||--||--|||||---||-||||||||-|||||
TCACCAACTCCTGGAGTTTACTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCT

CAGATGTCCTCTTCTCCCTCTGCCCTCAATCTTTCCCAGCATCAGGGACTTTTCCAATGAGTCAGCTGTT
|-|--||||-|||||||--||||||||||||||||||||||||||||-|||||||||||||||||||-||
CTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGCTCTT

TGCTTCAGATGACCGAAATACTGGAATTTCAACTTCAGCATCAGTCCTTCCAACAAGTACTCAGGGTTGA
--|-||||-||-||-||-|||||||-|||||-|||||||||||||||||||||--|-|||-||||--|||
CACATCAGGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAATACCCAGGACTGA

TTT
|-|
TCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.5.SCAFFOLD275400	531	812	BOV2	270	551	c	0.81	0.81	1660

GTTCAGTCGCCCAGTCATGTTTGACTCTTTGCAACCCCATGGACTACAGCAGGCCAGGCCTCTCTCTCCC
||||||||||-|||||||||--||||||||-|-||||||||||||-|||||-||||||||||-||-|||-
GTTCAGTCGCTCAGTCATGTCCGACTCTTT-CGACCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCA

TCATTATCTCCCGAAGTTTGCCCAAGTTGAAGTTCATTGCATCATTGATGT-GTCTAACCATCTTATCCT
|||--|-||||-|-|||||-|-|||--|-|-||-|||||--||--|||||---||-||||||||-|||||
TCACCAACTCCTGGAGTTTACTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCT

CAGATGTCCTCTTCTCCCTCTGCCCTCAATCTTTCCCAGCATCAGGGACTTTTCCAATGAGTCAGCTGTT
|-|--||||-|||||||--||||||||||||||||||||||||||||-|||||||||||||||||||-||
CTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGCTCTT

TGCTTCAGATGACCGAAATACTGGAATTTCAACTTCAGCATCAGTCCTTCCAACAAGTACTCAGGGTTGA
--|-||||-||-||-||-|||||||-|||||-|||||||||||||||||||||--|-|||-||||--|||
CACATCAGGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAATACCCAGGACTGA

TTT
|-|
TCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.2.SCAFFOLD291927	74	286	BOV2	349	560	d	0.89	0.89	1568

TGACTCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAGGGCAGGAGGAGGAAGGGACAACAGAGGATG
|||||||||-|||||||||||||||||||||||||||||||||||||||||-|-|||||-||||||||||
TGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAGGGCAGGAGGAGAAGGGGACGACAGAGGATG

AGATGGTTGGATGGCATCACTGACTCGATGGACATGAGTTTGGGTGGACTCCGGGAGTTGGTGATGGACA
||||||||||||||||||||-|||||-|||||||||||||||-||--|||||-|||||||||||||||||
AGATGGTTGGATGGCATCACCGACTCAATGGACATGAGTTTGAGTAAACTCCAGGAGTTGGTGATGGACA

GGGAAGCCTGGTGTATTGTGGTCCCTGGGGTTGCAAAGAGTTGGACACAACTGAGCGGCTGAACTGAACT
||||-||||||-||--||--||||-||||||-|-|||||||-|||||--||||||||-||||||||||||
GGGAGGCCTGGCGTGCTGCAGTCCATGGGGTCG-AAAGAGTCGGACATGACTGAGCGACTGAACTGAACT

GAA
|||
GAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.2.SCAFFOLD291927	1443	1643	BOV2	361	560	c	0.87	0.87	1383

TTCAGTTCAGCTCAGTCGCTCAGTTGAGTCCGATTTTTCGTGACCCCGTGAATCGCAGCACGCCTGGCCT
||||||||||-|||||||||||||---||||||-|-||---||||||-||-|--||||||||||-|||||
TTCAGTTCAGTTCAGTCGCTCAGTCATGTCCGACTCTTT-CGACCCCATGGACTGCAGCACGCCAGGCCT

CCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCATGTCCAGCGAGTCGGTGATGCCATCCAGCCG
||||||||||||||||||||-||||||-|||||-|||||||||||--|||||||||||||||||||-||-
CCCTGTCCATCACCAACTCCTGGAGTTTACTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCA

TCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCTCCAATCCCTCCCAGCGTCAGAGTCTTT
|||||||||||||||||||||||||||||||||--|||||--|||||||-||||-||||||
TCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.2.SCAFFOLD291927	385	992	L1_BT	556	1160	c	0.90	0.90	4367

TTTATTTTAATTAGAGGCTAATTACTTTACAATATTGTATTGGTTTTGCCATACATCAACATGAATCCGC
|||||||||-||------|||--||||||||--||||||||-|||||||||-|-|||||-||||||||||
TTTATTTTATTT-----TTAA--ACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCGC

CACAGGTGTACATGTGTTCCCCACCCTGAACCCCACTCCCACCTCCCTCCCCGTGTCATCCCTCTGGGTC
|||||||-|||||||||||||||-||-||||||--|||||-|||||||||||-|--||||||||||||-|
CACAGGTATACATGTGTTCCCCATCCCGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGCC

ATCCCAGTGCACC-GCCCCAAGCATCCTATATCCTGCATGGAACCTGGACTGGTGATTCGTTTCTTGTAT
--||||||||-||-|||||||||||||---|||-|||||-|||||||||||||--|-|||||-||---||
G-CCCAGTGCTCCAGCCCCAAGCATCCAGCATCATGCATCGAACCTGGACTGGCAACTCGTTCCT-ACAT

GATATTATACATGTTTCAATGCCATTCTCCCAAATCATCCCACCCTCTCCCTCTCCCA--GAGTCCAAAA
||||||--||||||||||-|||||||||||||||||-|||||||||||||||||||||--|||||||-||
GATATTTCACATGTTTCATTGCCATTCTCCCAAATCTTCCCACCCTCTCCCTCTCCCACAGAGTCCATAA

GACTGTTCTATACATCTGTGTCTCTTTTGCTGTCTCGCATACAGAGTTATT---ACCATCTTTCTAAATT
|||||||||||||||--||||||||||||||||||||-|-||-|-||||||---|||||||||||||||-
GACTGTTCTATACATGAGTGTCTCTTTTGCTGTCTCGTACACCGGGTTATTGTTACCATCTTTCTAAATC

CCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTCACTTCACTCTGTATAATAGGCT
||||||||||||||||||||||||||||--||||||||-||||||||-||||||||||||||||||||||
CCATATATATGCGTTAGTATACTGTATTTATGTTTTTCCTTCTGGCTTACTTCACTCTGTATAATAGGCT

CCAGTTTCATCCACCTCATTAGAACTGATTCAAATGCATTCTTTTTAATGGCTGAGTAAAACTCCATTGT
||||||||||||||||||||||||||||||||||||-||||||||||||||||||||||-||||||||||
CCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGT

GTATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGCT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGCT

ATTATAAACAGTGCTGTGATGAACACTGGGGTACACATGTCTCTTTCAATTCTG
||||||||||||||||-||||||||-||||||||||-||||||||||--|||||
ATTATAAACAGTGCTGCGATGAACATTGGGGTACACGTGTCTCTTTCCCTTCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.3.SCAFFOLD275400	360	412	ATCOPIA38A_I	261	312	d	0.79	0.79	231

CCACCGGAATC-GTAGATTCAAATCAAGGTCTCATTTCTTCTCCCACAGTGCAG
|||||||||||-||-|||-|-|-|||--|||||--|||||||--||-|||||||
CCACCGGAATCCGTTGATCCGACTCA--GTCTCCCTTCTTCTTGCATAGTGCAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.5.SCAFFOLD275400	318	370	ATCOPIA38A_I	261	312	d	0.79	0.79	231

CCACCGGAATC-GTAGATTCAAATCAAGGTCTCATTTCTTCTCCCACAGTGCAG
|||||||||||-||-|||-|-|-|||--|||||--|||||||--||-|||||||
CCACCGGAATCCGTTGATCCGACTCA--GTCTCCCTTCTTCTTGCATAGTGCAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.3.SCAFFOLD275400	531	566	OOREP1	267	298	d	0.82	0.82	180

CCACAAGTGGATATATTTACCCTAAGCTCTGTTGCT
|||-|||||||--|-----|||||-|||||||||||
CCATAAGTGGAAGTG----CCCTAGGCTCTGTTGCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.5.SCAFFOLD275400	489	524	OOREP1	267	298	d	0.82	0.82	180

CCACAAGTGGATATATTTACCCTAAGCTCTGTTGCT
|||-|||||||--|-----|||||-|||||||||||
CCATAAGTGGAAGTG----CCCTAGGCTCTGTTGCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mdo.U11.3.scaffold_13440	420	651	MIR	21	252	d	0.69	0.70	637

AGAGCACTGACCCTGGAGTAAGGAAAACTGAGTTCAAATAGTTCATAATTCAAATGAGTTCATAGCTCAC
|||||||-|+|-||||||--||-----|||-||||-|||----|-----||---||----||---||-||
AGAGCACGGRCTCTGGAGCCAGACTGCCTGGGTTCGAAT----CCCGGCTC---TG---CCA---CTTAC

TAGCTATGTGATCT-GGGCAAATC-CTAAAACTTT---TGCTGC-----CCTCAACTCTAAAACAGGGAT
|||||-|||||-||-||||||-|--||-||-||-|---|||--|-----|||||-||-|||||--|||||
TAGCTGTGTGACCTTGGGCAAGTTACTTAACCTCTCTGTGCCTCAGTTTCCTCATCTGTAAAATGGGGAT

AATAGTAATATCTATCTAATAGAGTTGT---GAGGTTCAGATGAGACGATATTTGTCATATGCTTAGAAT
||||-||-||-|||-||-||||-|||||---||||-|-|-|||||---|||+-|||-|---||||||||-
AATAATAGTACCTACCTCATAGGGTTGTTGTGAGGATTAAATGAGTTAATAYATGTAAAGCGCTTAGAAC

AGAGCCTGACACATATTAGTTATTTAATAAATATT
||-|||||-||||||-||-----|-|||||||-||
AGTGCCTGGCACATAGTAAGCGCTCAATAAATGTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.3.SCAFFOLD275400	1566	1788	MIR	16	257	d	0.65	0.67	489

GGTTAAAGAGCACCAACCTTAGAACTGAGCCAATTGTGTT----TCCCAGCTCCACTGTATAAAAAGAGT
||||||-||||||--+|--|-||-|----|----||-|||----||||-||||--|----||--|---||
GGTTAA-GAGCACGGRCTCTGGAGCCAGACTGCCTGGGTTCGAATCCCGGCTCTGCCACTTACTAGCTGT

AGAAACTTGGACAATTTTATTTAATCCTCACT-TGT----ATTTCCTCATACATAAAATGGAGATGATAG
---|-|||||-|||-||-|-||||-||||-||-||------|||||||||---||||||||-|||-|||-
GTGACCTTGGGCAAGTT-ACTTAA-CCTCTCTGTGCCTCAGTTTCCTCATCTGTAAAATGGGGATAATAA

TAGTACTTACCTTACAGAGTCATTGTGACACTTAAAGG------TATATGTAAGAC--TTTGAACAAACT
||||||-|||||-|-||-||--||||||---|||||-|------||+||||||--|--||-|||||----
TAGTACCTACCTCATAGGGTTGTTGTGAGGATTAAATGAGTTAATAYATGTAAAGCGCTTAGAACAGTGC

CTGGAATAT--TAGGCAC---ACAAATGTTACTTA
||||-|-||--||-||-|---|-|||||||+-+||
CTGGCACATAGTAAGCGCTCAATAAATGTTRGYTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.5.SCAFFOLD275400	1524	1746	MIR	16	257	d	0.65	0.67	489

GGTTAAAGAGCACCAACCTTAGAACTGAGCCAATTGTGTT----TCCCAGCTCCACTGTATAAAAAGAGT
||||||-||||||--+|--|-||-|----|----||-|||----||||-||||--|----||--|---||
GGTTAA-GAGCACGGRCTCTGGAGCCAGACTGCCTGGGTTCGAATCCCGGCTCTGCCACTTACTAGCTGT

AGAAACTTGGACAATTTTATTTAATCCTCACT-TGT----ATTTCCTCATACATAAAATGGAGATGATAG
---|-|||||-|||-||-|-||||-||||-||-||------|||||||||---||||||||-|||-|||-
GTGACCTTGGGCAAGTT-ACTTAA-CCTCTCTGTGCCTCAGTTTCCTCATCTGTAAAATGGGGATAATAA

TAGTACTTACCTTACAGAGTCATTGTGACACTTAAAGG------TATATGTAAGAC--TTTGAACAAACT
||||||-|||||-|-||-||--||||||---|||||-|------||+||||||--|--||-|||||----
TAGTACCTACCTCATAGGGTTGTTGTGAGGATTAAATGAGTTAATAYATGTAAAGCGCTTAGAACAGTGC

CTGGAATAT--TAGGCAC---ACAAATGTTACTTA
||||-|-||--||-||-|---|-|||||||+-+||
CTGGCACATAGTAAGCGCTCAATAAATGTTRGYTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.8.chr8	1542	1703	MIR	18	182	c	0.69	0.69	380

CCCCACAACAACCAAATAAAGTAGTTACCA--------CCTATGCATTACAGGTGAGGAGTAGGAGGCTC
||-||||||||||--||-|-||||-|||-|--------||-||---||||||-||||||----|||||-|
CCTCACAACAACCCTATGAGGTAGGTACTATTATTATCCCCATT--TTACAGATGAGGAAACTGAGGCAC

ACAAACGTTAAATCATTAGTTCAAGGTCACACAACTAAAAAGGGCTGGGATAGAGC-----TTTGGATTC
|-|-|-|||||-|-|-|-|--||||||||||||-|||--|||---|||---|||||-----||-|-|--|
AGAGAGGTTAAGTAACTTGCCCAAGGTCACACAGCTAGTAAG---TGG--CAGAGCCGGGATTCGAACCC

AGGGATATTTGACAGCAGACCCCACATGCTTTCAA
|||-|--|-||-|--||||-+||---||||-|-||
AGGCA-GTCTGGCTCCAGAGYCCG--TGCTCTTAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	296	409	MIR	9	132	c	0.69	0.70	321

ATGGGAAAACCAGAGCCCAGAGAGTCTAACGGGTTT-TCTAAGAACACACAGCCTGGTAAGTGGTAGAGC
|||-|-||||----||-|||||||--|||-----||--|-|||--||||||||-|-||||||||-|||||
ATGAGGAAACTGAGGCACAGAGAGGTTAAGTAACTTGCCCAAGGTCACACAGC-TAGTAAGTGGCAGAGC

CTG---------CTA---AGTCTGCCTGGCCAGAGTACATACATTTAACTACTAAGC
|-|---------|-|---||||||-||--||||||+-|-|-|--|||||-||||-||
CGGGATTCGAACCCAGGCAGTCTGGCT--CCAGAGYCCGTGCTCTTAACCACTATGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.4.SCAFFOLD306532	831	1233	L1MC5	1731	2138	c	0.65	0.65	598

TTCTTAATAT--GGACAATTTCAAACATACCAAAAGCTGATATTATGGTAAAATAAA-TCCCTTTTACTT
||-||||-||--|-|-|||||||||-||||-|||||--||-|--||-|||-|||-||-|-||---|||--
TTTTTAAWATTAGAAAAATTTCAAATATAC-AAAAGTAGAGAGAATAGTATAATGAACTTCCACATACCC

AATATTCATCTTCAGCAATTGCCAGCTTATAAACAGTTTTGTTTCA-CTA-ATCTCC--CCACTTTCATT
|--|--||-|||||-|||||--||--|-||---||-||||||||||-|||-|-||||--|-||||-|---
ATCACCCAGCTTCAACAATTATCAATTCATGGCCAATTTTGTTTCATCTATAGCTCCACCTACTTCCTCC

TATGGTTTTGGGGATTTTTTTTCAGGGCAAAATGCCAGGCATTATGCCATTTCACCTCTAAATACATTAT
-----|--|||--|||-||||-----|||||-|-||||-|||-||---||||-|-||-||||||--|-|-
C----TCCTGG--ATTATTTT--GAAGCAAA-TCCCAGACATCATATMATTTTATCTATAAATATTTCAG

CATGCACTGCTAACATACA----CTTTCTTTTTACACATTCATCATGTCATTAACACATCTAAAATTAA-
-|||-|---||||-|-|-|----||-|-||-|-|-|-|---||-||--|||||-||||-||||||-|||-
TATGTATCTCTAAAAGATAAGGACTATTTTATAAAATAACTATAATACCATTATCACACCTAAAAATAAC

AATGAAGCACTATT-TCACACCAATATTT---CA-TACTCAGATTGGCCTGATTATCT-CAAAACCATTT
|||-|--|--||-|-|||--|-|||||-|---||-|--|||-|||---|--|||-|-|-||-|---||||
AATAATTCCTTAATATCAT-CAAATATCTAGTCAGTGTTCAAATT--TCCAATTGTATACAYATATATTT

TTTCACTGTGAGATTGTTTGAATCAGAATTCAAACAAAATCCATAAATTGTATTTGGTTCCTATGTCTTC
||--|-|-|----||-||||||||||-||-||||-||--||||||-||||||-||||||--||||||||-
TTATAGTTTAYATTTKTTTGAATCAGGATCCAAATAAGGTCCATACATTGTAATTGGTTGATATGTCTTT

T
|
T

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
bta.U11.4.SCAFFOLD306532	1332	1537	BTALUL1	2	205	d	0.79	0.79	1124

TCTTCCTCGGTAGCTCAGCTGATAAAGAATTTGCTGGCAATGAGGGAGACCCTGGTTTGATTTCTGGGTT
|-|-||||--||||||||-||-|-|||-||-|||--||||||---||||-||--|||-||||-||||||-
TTTCCCTCA-TAGCTCAGTTGGTTAAGCATCTGCCTGCAATGCAAGAGATCCCAGTTCGATTCCTGGGTC

GGGAAGATCCCCTGGGGAAGGGATAGGCTACCCACTCCAGTATTCTTGAGCTTCCCTGGTGGCTCAGATG
||||||-----||||-||||||||||||-|||||||||||||||||||-|-||||||-|||||||||-||
GGGAAGGATGGCTGGAGAAGGGATAGGC-ACCCACTCCAGTATTCTTGGGTTTCCCTTGTGGCTCAGCTG

GTAAAGAATCCACCTACAATGCAGGAGACCTGGGTTCAATCCCTGGGTTCAGAAGATCCCCTGGAG
||||||||||--|||-|||||--|||||||--|-|||-|||||||-|||--|||||||||||||||
GTAAAGAATCTGCCTGCAATGTGGGAGACCCAGCTTCTATCCCTGAGTTTGGAAGATCCCCTGGAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.1.chr2	1	131	SINEC1_CF	1	131	c	0.93	0.93	955

GAGGCAGAGACACAGGCAGAGGGAGAAGCAGGCTCCATGCAGGGAGCCTGACATGGGACTGGATCCCAGG
||||||||||||||||||||||||||||||||||||||||||||||||-||--|||||||-|||||||||
GAGGCAGAGACACAGGCAGAGGGAGAAGCAGGCTCCATGCAGGGAGCCCGATGTGGGACTCGATCCCAGG

TCTCCACAATCAGGCCTTGGGCTGAAGGCGGCACTAAACCGCTGAGCCACCCGGGCTGCCC
||||||--||||-|||-|||||||||||||||-||||||||||||||||||||||||||||
TCTCCAGGATCACGCCCTGGGCTGAAGGCGGCGCTAAACCGCTGAGCCACCCGGGCTGCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.8.chr8	1330	1527	SINEC1D_CF	2	190	d	0.83	0.83	1133

GGGGTGCCTGGGTGGCTCAGTGGATTAAGTATCTGCCTTTGGCTCAGGTCATGATCCCAGGGTCCTGAGA
||||-||||||||||||||||-|-|||||-|||||||||--|||||||||||||||-||||||||||-||
GGGGCGCCTGGGTGGCTCAGTCGGTTAAGCATCTGCCTTCAGCTCAGGTCATGATCTCAGGGTCCTGGGA

TTGAGGCCTATATCAGGATTCCTGCTCAGCTGGGAGCCTGCTTCTCCCTCTCCCTCTGCTCAAGCTCATG
|-|||-|||--|||-||-|-|||||||||--|||||-||||||||||||||||||||||----||-|-|-
TCGAGCCCTGCATCGGGCTCCCTGCTCAGTGGGGAGTCTGCTTCTCCCTCTCCCTCTGCCT--GCCCCTC

TTCATACTCATGCTCTGATTCTCTCTCGAATAAATAAATAAAATATTCTTTAAAAAGA
|-|-||||--||||||----|||||||-||||||||||||||||---|||||||||-|
TGCCTACTTGTGCTCT----CTCTCTCAAATAAATAAATAAAAT---CTTTAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.1.chr2	157	314	SINEC1D_CF	1	166	d	0.82	0.82	816

AGGGGCGCACCTGGGTGGCTTAGTGGGTTAAATGTCTGCCGTCAGCTCAGGTTATGATTTCAGGGTCCTG
||||||||--||||||||||-|||-||||||---||||||-|||||||||||-|||||-|||||||||||
AGGGGCGC--CTGGGTGGCTCAGTCGGTTAAGCATCTGCCTTCAGCTCAGGTCATGATCTCAGGGTCCTG

GGATCCAGCCCCGCATC------CCTGCTGAGCAGGGAGCCGGCTTCTCCCTCTCCTCC------CCGTT
|||||-|||||-|||||------||||||-||--|||||-|-||||||||||||||--|------||--|
GGATCGAGCCCTGCATCGGGCTCCCTGCTCAGTGGGGAGTCTGCTTCTCCCTCTCCCTCTGCCTGCCCCT

CTGCTCTCTCTCGCTCTCTGTCTCTCAAAT
||||---||---|||||||--|||||||||
CTGCCTACTTGTGCTCTCT--CTCTCAAAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	1424	1602	SINEC1D_CF	1	195	c	0.76	0.76	679

TTCTTTTTTTTTTAAGATTG-ATTTATTTATTTTAGAGAGAGAGCG-GGGTGGGGGCAGAGGG------A
||-|||||||||-||||||--||||||||||||-|||||||||||----||-||--|||||||------|
TTTTTTTTTTTTAAAGATTTTATTTATTTATTTGAGAGAGAGAGCACAAGTAGG--CAGAGGGGCAGGCA

AAGGGAGAAAGAAACTTAAGCAAGTTCCCTGCTGAGCATGAAGCCCGATGCAGGGCTCA-------GACT
-|||||||--||-|----||||---||||--|||||||-|-|||||||||||||||||--------|||-
GAGGGAGAGGGAGA----AGCAGACTCCCCACTGAGCAGGGAGCCCGATGCAGGGCTCGATCCCAGGACC

-TGAG-CCAAAACCAAGAGTTG------GATGCCTAACAGACTACACCACCCAGGTGCCTCT
-||||--||--|||--|||-||------|||||-||||-||||---|||||||||-|||-||
CTGAGATCATGACCT-GAGCTGAAGGCAGATGCTTAACCGACTGAGCCACCCAGGCGCCCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	656	755	SINEC1D_CF	1	97	c	0.76	0.76	445

AGCATGGAACTCCAAGTCATGGGGCTTGAAGTCATAACCCTGAGGTCAAGACCTGGGCTGAAGTCAGATA
||||-|||-|-||-|--||--|||||-||---||--||||||||-|||-||||||-|||||||-|||||-
AGCAGGGAGC-CCGATGCA--GGGCTCGATCCCAGGACCCTGAGATCATGACCTGAGCTGAAGGCAGATG

TTTAAACAACTGAGCTACCCAGACACCCCT
-||||-|-|||||||-||||||-|-|||||
CTTAACCGACTGAGCCACCCAGGCGCCCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.7.chr22	2035	2200	SINEC1D_CF	2	164	d	0.72	0.72	446

GAGGTGCCTGGCTGGCTCAGTTGGTT--GTGTCTGACTTGATTTTTGAGAGCCAAGATTTTTGGCTCTCA
|-||-||||||-|||||||||-||||--|--||||-|||-|---------||--||-|--|--|-|||||
GGGGCGCCTGGGTGGCTCAGTCGGTTAAGCATCTGCCTTCA---------GCTCAGGTCAT--GATCTCA

GGGTTGTAGGATCGATCCCCTGTATTGGGTTCCACACTGGGCATGGAGCCTGCTTGAGATTCTCTTTCTC
||||--|-|||||||-|||-||-||-|||-|||---||--|---||||-||||||------|||--||||
GGGTCCTGGGATCGAGCCC-TGCATCGGGCTCCCTGCTCAGTGGGGAGTCTGCTT------CTCCCTCTC

CCTCT-------------CCCACTCATTCTCTCTCTCTAAA
|||||-------------||-|||--|-||||||||||-||
CCTCTGCCTGCCCCTCTGCCTACTTGTGCTCTCTCTCTCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	1890	1956	SINEC1D_CF	2	79	c	0.78	0.78	285

GGGCTTGAACTCATAACCCCGAGATCAAGA-----------GTCACATGCTCCACCAACTGAGCCAGCCA
|||||-||-|-||--||||-|||||||-||-----------|-||-|||||--|||-|||||||||-|||
GGGCTCGATCCCAGGACCCTGAGATCATGACCTGAGCTGAAGGCAGATGCTTAACCGACTGAGCCACCCA

GGCACCCC
|||-||||
GGCGCCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.1.chr2	1743	1944	SINEC2A1_CF	1	196	d	0.87	0.87	1007

GGGATCCCCGGCTGGCTCAGCAGTTTAGCGCCTGCCTTTGGCCCAAGGCGCGATCCTGGAGTCCCCGGAT
||||||||-||-||||-||||-||||-||||||||||||||||||-|||||||||||||||-|||-||||
GGGATCCCTGGGTGGCGCAGCGGTTTGGCGCCTGCCTTTGGCCCAGGGCGCGATCCTGGAGACCCGGGAT

CGAGTCCCACGTCGGGCTCCCCACGTCGGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTC
|||-|||||||||||||||||-------||-----|||||||||||||||||||||||||||||||||||
CGAATCCCACGTCGGGCTCCC-------GG-----TGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTC

CGCCTCTCTCTCTATC---------ATGAATAT-ATAAATAAATCTTCAAACAAACAAACAAACAAAAAA
-||||||||||||-||----------|||-|||-||||||||||----|||-|---|||-|||-||||||
TGCCTCTCTCTCTCTCTCTCTCTGTGTGACTATCATAAATAAAT----AAAAATTTAAAAAAAAAAAAAA

AA
||
AA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.1.chr2	2074	2200	SINEC1C2_CF	1	118	d	0.84	0.84	666

GAGCACTTGGGTGGCTCAGCCGCTTGGGTGGGTGACAATCTGCCTTTGGCTCAGGTTGTGATCCTGGGGT
|-|--|-||||||||||||-----|||-||-|-|----||||||||||||||||||--||||||-|||||
GGGTGCCTGGGTGGCTCAG-----TGGTTGAGCG----TCTGCCTTTGGCTCAGGTCATGATCCCGGGGT

CCTTGGATTGAGTCCCGCATCCAGCTCCCTGCAGGGAGCCTGCTTCTCTCTTTGCCT
|||-||||-|||||||-||||--|||||||||||||||||||||||||-||-|||||
CCTGGGATCGAGTCCCACATCGGGCTCCCTGCAGGGAGCCTGCTTCTCCCTCTGCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	398	574	L1ME4A	259	464	d	0.71	0.71	384

GAAATAGGCACTC--ACACACTCTTGGTGGGCATGTAAATTGG-GCACCCCTCCTGAAAAAAAATTTAGC
||||--|||||||--|-|||||--|||||||--|-||||||||--||-||-|-|||-||---|||||-||
GAAACGGGCACTCTCATACACTGCTGGTGGGAGTATAAATTGGTACAACCTTTCTGGAAGGCAATTTGGC

------CATCAA--GGTTTAAAATATATT--TGCCTTCTGATC----------ACTCCTAGGAATTTGGA
-------|||||--|--||||||-||-||--|-||-|-|||-|----------|||-||||||||-|---
AATATNTATCAAAAGCCTTAAAA-ATGTTCATACCCTTTGACCCAGCAATTCCACTTCTAGGAATCTATC

CTTGTAAAAGTATCCCAAA-----GCAAATAT------ACAAAGATGTCCACTGCATTAGGGTTTATTTA
||----|||--|||--|||------||||-||------||||||||||-|||-|||-||----|||||||
CTAAGGAAATAATCAGAAATGTGNACAAAGATTTACGTACAAAGATGTTCACCGCAGTA----TTATTTA

T
|
T

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	1112	1278	L1MA9	880	1045	d	0.72	0.72	496

AGATCTTCAA-GTCCTCATCTCAAGCAAAAAAAAAAATTGTAATTATATATGGTGACAGAT--GCTAACT
|||||||-|--||-||||-|-||--||||||||----|-||||-|||-|--|||||--|||--|-|||-|
AGATCTTAAGTGTTCTCACCACACACAAAAAAA----TGGTAACTATGTGAGGTGATGGATATGTTAATT

AGACTTCTTGTGGTGATGGTTTTGCAATATATACAAATACCAAATCATTATGTTGTACCCCAGAAACCAA
||--|--|||||||-||--|||--||||-|||||--|||-||||-|||-|-|||||||-||--|||---|
AGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATA

GACAATATTGTTATATCAATTATACCTCAA
-|||||-||--|-|-|||||||||||||||
TACAATTTTTATTTGTCAATTATACCTCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.5.chrX	2115	2199	L1MA9	23	117	c	0.74	0.74	287

CATTTCTCTGTCAACTTTTGGGAGATGCCT----------TTTGTCCATTCGCAAATTGAATGATTCGTT
|||||-|-||||--||||||-||-|||-||----------||||-|||||----|||-|--|-|||-|||
CATTTGTATGTCTTCTTTTGAGAAATGTCTATTCAGGTCCTTTGCCCATTTTTTAATCGGGTTATTTGTT

TTTGTACTATTGATTTGTGTGAGTT
|||-|-|||||||-||||-||||||
TTTTTGCTATTGAGTTGTTTGAGTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	1633	1789	SINEC1C1_CF	1	157	c	0.93	0.93	1152

ATTTATTCATGAGAGACACAGAGATAGAGGCAGAGACACAGGCAGAGGGAGAAGTAGGCTCCCTTCTGGG
||||||||||||||||||||||||-|||||||||||||||||||||||||||||-|||||||-|-|-|||
ATTTATTCATGAGAGACACAGAGAGAGAGGCAGAGACACAGGCAGAGGGAGAAGCAGGCTCCATGCAGGG

AGCCTGATGTGGGACTTGATCCCAGGATTCTGGGATCACGACCTGAGCCAAAGGCAGACGCTCAACCACT
||||-|||||||||||-||||||||||--|-|||||||-|||||||||||||||||||||||||||||||
AGCCCGATGTGGGACTCGATCCCAGGACCCCGGGATCATGACCTGAGCCAAAGGCAGACGCTCAACCACT

GAGCCACCCAGGCACCC
|||||||||||||||||
GAGCCACCCAGGCACCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.7.chr22	1837	1996	SINEC1C1_CF	1	159	d	0.89	0.89	1057

GGACGCCTGGGTGGCTCAGGGGTTGAGTGTCTGCCTTAGGCTCAGGTCATGATCCCAGGGTCCTGGGATC
||--|||||||||||||||-|||||||-|||||||||-||||||||||||||||||-|||||||||||||
GGGTGCCTGGGTGGCTCAGTGGTTGAGCGTCTGCCTTTGGCTCAGGTCATGATCCCGGGGTCCTGGGATC

AAGTTCTGAATCAGGCTTCCTGCAGTGGAGCCTGCTTCTTGCTCTGCCTGTGTCTCTGCCTCTCTCTCTC
-|||-|---|||-||||-||||||-||||||||||||||--||||||||||||||||||||||||||||-
GAGTCCCACATCGGGCTCCCTGCA-TGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTG

TGTCTCTCATGAGTAAATAA
||||||||||||-|||||||
TGTCTCTCATGAATAAATAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.2.chr30	2060	2122	ATREP10D	129	191	c	0.83	0.83	231

GGTTTAGTTTTTA-TCTTGTATTTCTAATTTAAAAAGAAAAAAGTT---TTATTTCTTATGTTAGTA
|-||||-||||||-|-||-|||||||---||||-||||||||||||---|-|||||||-|-||||||
GATTTATTTTTTAGTTTTCTATTTCT---TTAAGAAGAAAAAAGTTAATTGATTTCTT-TTTTAGTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.3.chrX	28	960	L1_Fc_orf2	2172	3122	d	0.79	0.79	4923

TCAGTAAAATCGCAGGACACAAAATCAACATAAAGAAATCTGTTGCATTTCCATATACCAATAATGAAGC
||||-|||-|-||||||-||||||||||--||-|||||||-||||||||---|||-||-|||||-|||||
TCAGCAAAGTTGCAGGATACAAAATCAATGTACAGAAATCAGTTGCATTCTTATACACTAATAANGAAGC

AACAGAGAGAGAAATCAAGGAATCAATCCCATTTACAATCACACCAAAAGCCATGA--TACCTAGGAATA
||||||-|||-||||-|||-||---||||||||-||-||--||||||-|--|||-|--||||||||-|||
AACAGAAAGACAAATAAAGAAACTGATCCCATTCACGATTGCACCAAGAAGCATAAAATACCTAGGGATA

AACTTAACTGTAGAGGTAAAGGACCTGTTTTCTGAAAATTATAAAACATTGATGAAAGAAATTGAAGATG
||--||||---|||-||||--||-||||-|-|||||||-||||-||---|||||||-|||||||||||-|
AATCTAACCAAAGATGTAANAGATCTGTATGCTGAAAACTATAGAAAGCTGATGAAGGAAATTGAAGAAG

ACACAAAGAAATGGAAAAAGATTCCATGCTCATGGATTGGAAGAACAAATATCATTAGAATGTCTCTATT
|-|-||||||||||||||--|||||-|||||||||||||||||||-||||||--|-|-||||||--||-|
ATATAAAGAAATGGAAAACCATTCCGTGCTCATGGATTGGAAGAATAAATATTGTCAAAATGTCAATACT

ACCCAAAGCAACCTACACATTTAATGCAATCCCTATCAAAATACCACCAGTATTTTTCACAGAGCTAGAA
|-|||||||-|-|||||||||-|||||-|||||-||||||||--||||||-|||-|||-|--||||||||
AGCCAAAGCTATCTACACATTCAATGCGATCCCAATCAAAATTGCACCAGCATTCTTCTCGAAGCTAGAA

CAAACCATCCTAAAATTTGTATGGACCCACAAAAGACCCTGAATAGCCAAAGCAACCTTGAAAAAGCAAA
|||-|-|||||||||||--||||||-|||||||||-|||-||||||||||||-||--|||||-|||-|-|
CAAGCAATCCTAAAATTCATATGGAACCACAAAAGGCCCCGAATAGCCAAAGTAATTTTGAAGAAGAAGA

GCAAAGCTGGAGGCATTAAAATTCTAGACTTCATGGTATATTACAAAGCTGTAGTGAATAAAACAGTATG
-||||||-||||||||-|-|||-|-||||||-|---|-||-||||||||||||-|-|--||-||||-|||
CCAAAGCAGGAGGCATCACAATCCCAGACTTTAGCCTCTACTACAAAGCTGTAATCATCAAGACAGCATG

GTACTGGCACAAAAATAGACACATACATCAGTGGAATAGAACAGAAAACCCAGGAATGAATCCACAACTA
|||-|||||||||||-|||||||||-|-||-||||||||||-|||||-|||||-|-|--|-||||||---
GTATTGGCACAAAAACAGACACATAGACCAATGGAATAGAATAGAAACCCCAGAACTAGACCCACAAACG

TATGGTCA-------------------GGGAAGAACATCCAATGGAAAAAAGACAGTCTCTTCAACAAAT
|||||-||-------------------||-|||||-||||||||||||||||||||||||||-|||||||
TATGGCCAACTAATCTTTGACAAAGCAGGAAAGAATATCCAATGGAAAAAAGACAGTCTCTTTAACAAAT

GATGTTGTGAAAACTGGACAGCCGCATGCAAAACAATGGAACTGGACCACCTGCTTACATCAGACACAAA
|-||-||-||-|||||||||||--||||||-||---||-||||-||||||-|-||-|||-||--||||||
GGTGCTGGGAGAACTGGACAGCAACATGCAGAAGGTTGAAACTAGACCACTTTCTCACACCATTCACAAA

AATAAATTCAAAACGGATGAAAAACATAAATGTGAGATAAGAAACTATTAAAATCCTAGAAGAGAACTCA
||||||-||||||-||||-||--||-|-|||||||||-|-|||||-||-||||-||||||-|||||--||
AATAAACTCAAAATGGATAAAGGACCTGAATGTGAGACAGGAAACCATCAAAACCCTAGAGGAGAAAGCA

GGCAGTAAGCTCTTTGATATTTGCCACAGCAACTTCTTGCTAGATATATCTCCTAAGGCAAGGGAACCAA
||-|---|-||||-|||--|--|||--|||||-|||||-||-||-|-|||-||-||||||||||||--||
GGAAAAGACCTCTCTGACCTCAGCCGTAGCAATTTCTTACTTGACACATCCCCAAAGGCAAGGGAATTAA

AAGCAAAAATGAACTATTGGGACTTCATTAAAAAAAAAAAAAACTTCTTCACAGTGAAGGAAACAATCAA
||||||||||||||||-||||||-||||----||-|-|||||-|||||-|||||--||||||||||-|||
AAGCAAAAATGAACTACTGGGACCTCAT---GAAGATAAAAAGCTTCTGCACAGCAAAGGAAACAACCAA

CAAAACTAAAAAGCAGCCTACAGAATGGGAAACGATATTTGCAA
|||||||||||-|||-||-||-||||||||||-|||||||||||
CAAAACTAAAAGGCAACCAACGGAATGGGAAAAGATATTTGCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.3.chrX	1134	1320	L1_Felid	409	602	d	0.83	0.83	1065

AAAATACAGATTT--AGAGATACATGCACCCCAATGTTTATAGCAGCATTACTAACATTAGCCAAACTAT
||||-||--|||---|-|||||||||||||||-||||||||-|||||||||-|-|||-||||||||-|||
AAAACACTAATTCGAAAAGATACATGCACCCCTATGTTTATNGCAGCATTATTTACAATAGCCAAANTAT

GGAGAAAGCCCAAGTATCCATCAACTGATGAATGGATAAAGAAGAAGTGGTATATATA----ATGGAATA
|||---|-|||||||-||||||-|--|||||||||||||||||||-||||||||||-|----||||||||
GGAAGCAACCCAAGTGTCCATCGATGGATGAATGGATAAAGAAGATGTGGTATATACATACAATGGAATA

TTACTCAGCCATCAAAAAGA-TGAAACCTTGGCATTTCTAATGACACGGATGGA
||||||||||||-|||||||-|||||-||||-|||||--||--|||-|||||||
TTACTCAGCCATAAAAAAGAATGAAATCTTGCCATTTGCAACAACATGGATGGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.3.chrX	1548	1787	L1_Felid	690	930	d	0.73	0.73	838

AAAAAAAAGAAAAAAAAGGAGAGAGGGAAACAAGTCAT--AAGAGACTCCTAAAGATAGAGAACAAACTG
||||-|||--||-|||-|||-|-||--|-||||--||---||-||||||-|||--|||||||||||||||
AAAACAAATGAACAAAGGGAAAAAG--AGACAAACCAAGAAACAGACTCTTAACTATAGAGAACAAACTG

AGGGTTGATGGAAGG-AGGTGGGTGGGGA-ATGGGAAAGATGGGTGACGAGTATTAAGGAGGGTACCCAT
|-||||----||-||-||||-|||||||--|||||--|-||-|||||-|-|-|||||||||-|-||--||
ATGGTTACCAGAGGGGAGGTTGGTGGGGGGATGGGTGAAATAGGTGANGGGGATTAAGGAGTGCACTTAT

TATGATGAACACTATGTGTTGTATGTAAGGGATGAATCACTGAATTCTACTCCAGAAATCAATATTGCGC
--||||||-||||--||--|||||--||--|-|||||||||--|||-|||-||-||||--|||||----|
CGTGATGAGCACTGGGTAATGTATAGAANTGTTGAATCACTATATTGTACACCTGAAACTAATAT--AAC

ACTGTATGCTAACTAC-CTAAAATTTAAATTAAAA
||||||||-||||||--||--|||||||||-||||
ACTGTATGTTAACTATACTGGAATTTAAATAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.3.chrX	1366	1537	SINEC1A_CF	1	168	d	0.94	0.94	1269

GGGATCCCTGGGTGGCTCAGTGGTTTAGCACCTGCCTTCGGCCCAGGGCGTGATTCTGGAGTCCTGGAAT
||||||||||||||||||||-||||||||-||||||||-|||||||||||||||-|||||||||-||-||
GGGATCCCTGGGTGGCTCAGCGGTTTAGCGCCTGCCTTTGGCCCAGGGCGTGATCCTGGAGTCCCGGGAT

CGAGTCCTACATCAGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTATCTCTGCCTCTCTCTCTC
|||||||-|||||-|||||||||||||||||||||||||||||||||||||-||||||||||||||||||
CGAGTCCCACATCGGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTC

TCTCTCTCTCTGTGTCTCTCATGAATAAATAA
|||||||----|||||||||||||||||||||
TCTCTCT----GTGTCTCTCATGAATAAATAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.3.chrX	1893	1954	TOM_I	5499	5563	d	0.78	0.78	227

TAACAAAGCCTATAGGCAAGA----AAAGAAATAAATAGGGAATCTATTGCAATATGTAAGATAAC
|||-|||---||||--|||||----||||||-|||||||-||||-||||||||-||-|||-|-|||
TAATAAAATTTATAATCAAGACAACAAAGAAGTAAATAGTGAATGTATTGCAA-ATATAATAAAAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	206	330	MLT1I	281	409	d	0.71	0.71	422

AGCAAGGCCCCTGTCAATCCATGTTGGACACATAGCATTAGAAAGAAATCATCTTTTGTT-----AAGTC
||||--|||||-|-|-|-||--|-||||||--||||||-||-|||||||-|-|-||||||-----|||-|
AGCAGAGCCCCAGCCGACCCGCGATGGACATGTAGCATGAGCAAGAAATAAACCTTTGTTGTTTTAAGCC

ACTGAGGATTCAGGGTTAGCTCATTTGTACAGCATAATCTGACTGACACTGACTCATACA
||||||--||--|||||-|-|--||--|-||||||||-||--|--|--||||||-|||||
ACTGAGATTTGGGGGTT-GTTTGTTACTGCAGCATAACCTAGCCTATCCTGACTGATACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	4	116	MLT1I	130	236	d	0.70	0.70	277

TGGGCTGAGGTGAAAGGTGTCACCTTGGGGCCGAAGCATTTAAGAGGTGGTATAGGAGTCTCCAGGG-CT
||-||-||-||||---|||||||-|--||||-|||||-||||||||---||-|--||-||-|||-|--||
TGAGCAGAAGTGACGTGTGTCACTTCCGGGCAGAAGC-TTTAAGAGCCAGTGTGTGATTCNCCANGTTCT

CTCTTCCTTTGACACT-TGCCCAGAAAGGCCTTCTGTTACAGATG
||-|-|||-||-|||---|-||||-||-------||||-||||||
CTTTCCCTCTGCCACGGNGACCAGCAA-------TGTTCCAGATG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	640	702	ROVER_DM	3616	3679	c	0.77	0.77	243

TTATTTAGCCTGAAATTTGAAGT--GCTTTATATAATTTCTAGAACCCTGATTCAAAGGATTGGA
||||-||||-||-|-|||-|-||--||||-|-|||||||||-|||--|||-|||||-||||||-|
TTATCTAGC-TGTAGTTTAAGGTTGGCTTGAGATAATTTCTCGAAGACTGCTTCAAGGGATTGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	1323	1371	MEGY-LTR_MT	479	530	d	0.82	0.82	255

TTCTTTTCTTTTCCTTTCTTTTCTTTTTTTTTCCTTTT---CTTTCTTTCTT
||||||||-||||||||-|||||-|-|-||||-||||----||||||-||||
TTCTTTTCCTTTCCTTTATTTTCCTGTCTTTTACTTTCATGCTTTCTCTCTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.8.chr8	414	506	MIR3	58	152	d	0.73	0.73	309

GGGTTCAGATTCCATCTCTTCCACTAACCAGCTCTGTGATCTTGGCCAAGTGATGGTTG--CTTTCCCAG
||||||---|-|-|-||||-||||||||-||||-|||||-|||||-|||||-|---||---||-||---|
GGGTTCTAGTCCTAGCTCTGCCACTAACTAGCTGTGTGACCTTGGGCAAGTCAC--TTCACCTCTCTGGG

CCTCAGGT--CCTCATCTCCAAGATGA
||||||-|--||||||||--||-||||
CCTCAGTTTTCCTCATCTGTAAAATGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.7.chr22	301	420	MIR3	59	180	c	0.67	0.67	294

ACCTAAGAGGCCGTCCAGTCCAGATTCTTCTC-TTCTG-AGAGGAGCAACA-TGAAGCCCAAGGAGCTTA
||||-||||--|-||-||||||----|--|||-||-|--|||-|||-||-|-|||-|||||--|||-|-|
ACCTTAGAGATCATCTAGTCCAA--CCCNCTCATTTTACAGATGAGGAAAACTGAGGCCCAGAGAGGTGA

AGTGACTTGTACAAAG-AACCCCGCTAATTAGCAGTACAGTTCGTGCTAGAGCC
|||||||||--|||-|--||-|-||||-||||--|-|-||-|-|--|||||-||
AGTGACTTGCCCAAGGTCACACAGCTAGTTAGTGGCAGAGCTAGGACTAGAACC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.3.chr21	2068	2111	MIR3	153	195	c	0.84	0.84	266

TTTGAGCTGGGAGGGACCCTTAAAGGTCATCTAGTCCAACTCAC
||-|||||||-|||||||-|||-||-||||||||||||||-|-|
TTAGAGCTGGAAGGGACC-TTAGAGATCATCTAGTCCAACCCNC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.8.chr21	302	421	MIR3	59	180	c	0.67	0.67	285

ACCTAAGAGGCCGTCCAGTCCAGATTCTTCTCTTCTGAGAGA--AGCAACA-TGAAGCCCAAGGAGCTTA
||||-||||--|-||-||||||----|--|||-|-|-|-|||--||-||-|-|||-|||||--|||-|-|
ACCTTAGAGATCATCTAGTCCAA--CCCNCTCATTTTACAGATGAGGAAAACTGAGGCCCAGAGAGGTGA

AGTGACTTGTACAAAG-AACCCCGCTAATTAGCAGTACAGTTCGTGCTAGAGCC
|||||||||--|||-|--||-|-||||-||||--|-|-||-|-|--|||||-||
AGTGACTTGCCCAAGGTCACACAGCTAGTTAGTGGCAGAGCTAGGACTAGAACC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	1509	1602	MIR3	38	149	d	0.71	0.71	280

GACTGAGACACAAGACACTTAAGGTCCAGCCTTGGCT--GCCTCCAACTAGCTGTATG-------GCA--
||||--||--||-||-||-|--|-||-||-|-|-|||--|||-|-||||||||||-||-------|||--
GACTAGGAGTCAGGAGACCTGGGTTCTAGTCCTAGCTCTGCCACTAACTAGCTGTGTGACCTTGGGCAAG

-----TCACCACCCTGAACCTTAGTTTT--TTATCTATAAAA
-----|||||-|-|||--|||-||||||--|-||||-|||||
TCACTTCACCTCTCTGGGCCTCAGTTTTCCTCATCTGTAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.5.chr8	1687	1736	MIR3	155	205	c	0.75	0.75	229

TCATAGAATGTTAAA-TTGAATGAAAACTTAGAGATTACATAGTCCAATTC
|||||||||||||-|--||-|-|--|-|||||||||-|--||||||||--|
TCATAGAATGTTAGAGCTGGAAGGGACCTTAGAGATCATCTAGTCCAACCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	1818	1879	MER5C	7	76	d	0.80	0.80	310

TACTCAAAGGGTGGTCCAGAGA----TGCTGG----CAAACTATTTGTTACTGGTCTATGGCACGATAAG
|||||||||-||||||||--||----||||-|----||||||-||||||||--|||-|||--|-||||||
TACTCAAAGTGTGGTCCATGGACCAGTGCTAGTCTGCAAACTGTTTGTTACCAGTCCATGATAAGATAAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.4.chr37	1926	2003	CHARLIE10	1372	1449	c	0.76	0.76	374

ATTTTTTTTGACAACAAGATTTTCTCAGTGAAGGATGCAGGACATTGATTTACATTCTACAGGAAGCTTC
||||||||-|--|-|||||-||||||--|||||||-||||--|-|||-||||||||||---|-|||||-|
ATTTTTTTCG-TAGCAAGACTTTCTCGATGAAGGAAGCAGTGCGTTGGTTTACATTCTGGNGCAAGCTCC

TTA-TCTAG
|||-|||-|
TTAATCTGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.5.chr17	1276	1705	L1M3A_5	66	526	c	0.63	0.63	640

GTTCTGCAGTTGAGCAAAACCTCCGGTTGGGATTAATACTTGGG---CACTACAGGTAGGAACTCTGT--
|-|-|||||-||-||-|--|----||-|||-||---|--|||||---||||-|-||-||||||-|-|---
GCTTTGCAGGTGGGCTATGCAGTTGGCTGGTATCTCTGATTGGGTGCCACTGCTGGCAGGAACACAGAGC

--CTGCCAAGATACATGTGCTAATTGCCACAAGCCCTTCCCCACTT------TTCCACCACTGATTCTCA
--|--|||||||--|----||--|--|----|||-||-||-|--||------|||-|||--|||--|---
TACCACCAAGATCTACACACTGGTCACTGTGAGCTCTGCCTCCTTTCTTTGTTTCTACC--TGACCCCAG

GTGGTGGAGCCCCACACATT--CCCCAGCAATCCTTGTGATATGAGATCAGAGTAGAGGCTCCCATGAAG
|||||--||||---|-||||--||||-|---|||-|||||--|||||---||||-|-|--|||---||||
GTGGTCTAGCCATGC-CATTACCCCCTGTGTTCCCTGTGAGGTGAGACAGGAGTGG-GCTTCCTGGGAAG

TA----GGAGTGGT------GCTGGTTGT-TCCCCAGGGGCTCCCTTTTCCAACTGGAGGAACTGGAGGC
|------||-||-|------|||||-|||-|-||-----||||-|||||||-||||-||-|||||-||||
TGTCTCAGAATGCTAGGGAAGCTGGATGTCTACCTCTAAGCTCTCTTTTCCCACTGTAGAAACTGTAGGC

TTAGG--------CTCTGTGTGGTGCTGCACTGGCTTGGGGGAGAGGCAATACAGTCAAAGTGTAGCTGC
---||--------|||-||||||+-|||--|-|-||------||-|||||----||-||||||---|-|-
CCGGGGAAWTTCTCTCNGTGTGGYACTGTGCCGACTK-----AGGGGCAACGTGGTTAAAGTGAGACGGT

TTCTCTT----TTCTTATGCAGTTTGTCTTGGTCTCTAGTGC------AAGGGGTGGGAGTGGCACTTAA
|-|||||----||-|-|||--||||-|-||-||-|||-|||--------||--||---||+--||-||--
TCCTCTTACCCTTTTAATGTGGTTTTTATTCGTTTCT-GTGNTCCACGNAGNTGTCTCAGYCTCATTT--

AACCTACATTCTAGGATTCT-CACAGTGATGTT-TTGTTCTTGAATAGTTGTTAGT
---|-|--||||-|-|||-|-||||--|--|||-||||---||||||||||-||||
---CCAAGTTCTGGCATTTTTCACAAAGGCGTTCTTGTCTGTGAATAGTTGCTAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.5.chr17	1776	1821	ATCOPIA55_I	4224	4267	d	0.82	0.82	232

TCACTCCTGCTCTAAACATTTTTAAACTAATAATATCATTTTGTTA
||||-|--||||||||||-|||-|||||-|---|||||||||||||
TCACACACGCTCTAAACACTTTCAAACTCAC--TATCATTTTGTTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	1112	1504	L1ME_ORF2	2245	2644	c	0.74	0.75	1574

TGATCACAATAGCTTTTATAGTACGTCTTGAAATGGGGTAGTGTCAGCCCTCTGACTTTGTT-TTCTCCT
||||-||--|||||||-+|||||-||-|||||||--||||-|||-||-||||--||||||||-||||---
TGATTACTGTAGCTTT-RTAGTAAGTTTTGAAATCAGGTAATGTGAGTCCTCCAACTTTGTTCTTCTTTC

TCAATATTGTGTTAACTGTTCTAG-TCTTTTGCCTCTCTACATAAACTTAAGAATTGCTTTGCCAGTTCC
||||-|||||-||--||-||||-|-||-|||||-|-||-|-|||||-||-|||||---+|||-||-||-|
TCAAAATTGTTTTGGCTATTCTGGATCCTTTGCATTTCCATATAAATTTTAGAATCAGYTTGTCAATTTC

-ACAAAAGAGACTACTGGGAGTT-GATTATGATTATATTGAATCTATAGATCAAGCTGGAAAGAACCGAT
-||||||-|-||-|-|||||-||-||||--||||-|||||||||||||||||||--|||--||-|--|--
TACAAAAAAAACCATTGGGATTTTGATTGGGATTGTATTGAATCTATAGATCAATTTGGGGAGTATTGMC

ATCTGAACAATATTGAGTCTCACCATCCACGAACATGGAATATCTCTCTATTTATTTAGATCTTT---GA
||||-|||||||||||||||--|-|||||-||||||||-|||||||||-||||||||||-||||-----|
ATCTTAACAATATTGAGTCTTCCAATCCATGAACATGGTATATCTCTCCATTTATTTAGGTCTTCTTWAA

TTTATTTTACCAGCATTTCATTGTTTTACTCATATAGATTTTGTACATGTTTTGTTAGATTTATACTAGA
|||-|||-|-||---|||--|-|||||---|-||-|--|-|||+|-+|-||||||||-||||||-|---|
TTTCTTTCATCAATGTTTTGTAGTTTTCAGCGTACAAGTCTTGYATRTATTTTGTTAAATTTATTCCTAA

GTATTTC-TTATTTTGAGGTGCTAATGTAAATGGTATTGTCTT--TAATTTCA
||||||--||-||||||--|||||-|||||||||-|||||-||--||||||||
GTATTTTATTTTTTTGA--TGCTATTGTAAATGGWATTGTTTTCTTAATTTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	724	995	L1ME_ORF2	2859	3135	c	0.76	0.78	1280

TCCTTTATCAGATACGTGTTCTGCTAATATTTTCTCCTAGTCTGTGGCTCGTCTTTTCGTTCTCTCAACA
||||||-|||||||--||-|-|||-||||||||||||-|||||||||||-||||||||-||-|||--|-+
TCCTTTGTCAGATATATGWTTTGCAAATATTTTCTCCCAGTCTGTGGCTTGTCTTTTCATTTTCTTGATR

ATGTCTTTGGCAGAG---AAGTTTTTAATTTTAATGAAACTCAATTTGTCATTTTTTTTCTTTTATGTAT
-|||||||-|-||||---||||||||||||||-|||||---||||||-|||-|||||--|||||-|---|
GTGTCTTTTGAAGAGCAGAAGTTTTTAATTTTGATGAAGTCCAATTTATCAATTTTTC-CTTTTGTTGCT

CATACTTTTGGTGTTGTATTTAAAATGTCATCACCAAATCCAAGGTCACCTAGATTTTCTTCTGTGTTGT
--|-|||||-||||--|||-|||-|--||-|--||-|+-||||||||||--|||||||||-||-||||-|
TGTGCTTTTKGTGTCATATCTAAGAAATCWTTGCCTARCCCAAGGTCACGAAGATTTTCTCCTATGTTTT

CTTCTAGAATTTTTATAGTTTT-GCCTTTATATTTAGATCTAGAATCTATTTTGAATT--TTTTTTTA
||||||-+|-||||||||||||-|--||||-||||||-||||-+|||-|||||||-||--|||||-||
CTTCTAARAGTTTTATAGTTTTAGNTTTTACATTTAGGTCTATRATCCATTTTGAGTTAATTTTTGTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
cfa.U11.7.chr22	316	1300	L1ME_ORF2	1722	2721	c	0.67	0.67	1259

GTGTGG-TCTATTTCTTGGATCTCTTTTATGTTCCTTGGATTTACTTGTCTATCCTTAGGCTGATACCA-
||||||-|||||||||-||-|||||-||-||||||-|-|||-||--||||||||||||--|--||||||-
GTGTGGGTCTATTTCTGGGTTCTCTATTCTGTTCCATTGATCTATATGTCTATCCTTATACCAATACCAC

------TTCATTTGTGGGATTGTAGATTCCTATTAAATCCTAACAGCCTACAGGACAAGCTCGTGCTTCC
------||-|||------|-|||||-||--||-|||-|--|-|-|-|----|||--||----|||--|||
ACTGTCTTGATT------ACTGTAGCTTTRTAGTAAGTTTTGAAATC----AGG-TAA---TGTGAGTCC

CCTCTCCCTTGTCTAGTTCTTTTTAGAGATTTTCTTGTATTGACATTTTGCTTTTCCAAATAAATTTTAT
-|-|--|-||||----||||||-|--|-|||-|-|||------------|||-|||---||---------
TC-CAACTTTGTTC--TTCTTTCTCAAAATTGTTTTG------------GCTATTCTGGAT--------C

TTTTATTTATTTATTTTTATTCATTTTGTATATTTTTACCAAATAAATTTTAAAAATCAGCTTGTCATGT
-|||-----------------|||||------------|||-||||||||||-||-||||+||||||--|
CTTTG----------------CATTT------------CCATATAAATTTTAGAA-TCAGYTTGTCAATT

TCCATGAAAAAGGT--TTAGG-TTTTGATTAGTATTAT--------TATAAAGCAATAATTTGGGAGAAT
||-|--|||||-----||-||-||||||||-|-|||-|--------||||-|-||||--||-|||||-||
TCTACAAAAAAAACCATTGGGATTTTGATTGGGATTGTATTGAATCTATAGATCAAT--TTGGGGAGTAT

TGGTATTCT--C----CTGAGTCTCCTTATC-GTTAATATGATAGATTTGTCTACTGGTTTAGGCCTTTT
||--||--|--|-----|||||||-|--|||--|-||-|||-||-||-|-||-|-|--||||||-|||-|
TGMCATCTTAACAATATTGAGTCTTCCAATCCATGAACATGGTATATCTCTCCATTTATTTAGGTCTTCT

TAAAATAACGTTCAAAAAAAGTTTTATAATCTTATCCATAAAAATATTACATACTTTTAATTATACTTAT
|-||-|--|-||||--||--|||||-||-|-||---|-||-||-|-||-+||+--|||--|||-|-||||
TWAATTT-CTTTCATCAAT-GTTTTGTAGTTTTCAGCGTACAAGTCTTGYATRTATTTTGTTAAATTTAT

-CCTAGGAAATTTCCTTTTT-----CTTTTATAAATGG---TGATTTGTAAAATATTCCATCTCTTAGTT
-||||-|-|-|||--|||||-----||-||-|||||||---||-|||-|-||---||-|||-|-----||
TCCTAAGTATTTTATTTTTTTGATGCTATTGTAAATGGWATTGTTTTCTTAA---TTTCATTTTCANATT

CTTTCTTTTGAG-GTATAGGAATGAAATTAATTTTTATATATTGATTTTTCTATCCAGGTCCCTTGGTAG
-||--||---||--|||||-|||--||||-||||||-||||||||--||--|||||-|----||||-||-
GTTCGTTGCTAGTATATAGAAATACAATTGATTTTTGTATATTGACCTT-GTATCCTGNGANCTTGCTAA

TTTTGATCATT--TTAAAGTAGAAATGTTG------CTTT-----TTTCTTTGCAAGAAATCATTATAAT
-|||--|-|||--||--|||-|---|-|||------||||-----|||||-|--|--|||||||---|--
ATTTATTTATTAGTTCTAGTWGTTTTTTTGTGGATTCTTTAGRATTTTCTATATANAAAATCATGTCATC

TGCACATATTAAA----TTTTGATTCTTTCATTTCAATG-------CTTATAGATTTTTTTCTTGCCTTA
|||--|||--||-----||||--|||||-|-||-||||--------|||-||--|-|||-||||||||||
TGCMAATA--AAGACAGTTTTACTTCTTCCTTTCCAATCTGTATGCCTTTTATTTCTTTCTCTTGCCTTA

CTGCACTGATTAGGATCTATAGTACAGTGTTGAATGGCAGTGG---AAATA-ATATGCATG----ATGCA
-|||||||--|||||--|--||||||-||||||||-|-|-|||----|-||-|-||-|-||-----|-|-
TTGCACTGGCTAGGACTTCCAGTACAATGTTGAATAGAAATGGTGAGAGTAGACATCCTTGTCTTNTTCC

TAATTTT-TAAGAAAAGCTTTATAATGTTTTACCATTAGG-ATGCTGGTAGCAG--GGTTT--TGTAGGT
|-||-||----||||-|||||--|-|-|||-|||||||-|-|||-||-||||-|--|||||----||--|
TGATCTTAGGGGAAAWGCTTT-CAGTTTTTCACCATTAAGTATGATGTTAGCTGTAGGTTTGTCATATAT

ACCTTTCATCAGGGTGAAGAAGTTTCCTTCTACTCTCTGCTTT-----GAGTTTTTATAAAGAATGGGTG
--|-||-||-|---|||-||||||-|-|||||-||-||--|||-----||||||||||-|-||||||-||
KNCCTTTATTATNTTGAGGAAGTTCCTTTCTATTC-CTAGTTTATTGAGAGTTTTTATCATGAATGGATG

T-GGATTTTATCA--TGTTTTT---------AT-GAGATGAGCACG-AAGTTTTCTAGTTTCACCTCTTA
|-|-|||||-|||--||-||||---------||-|||||||-||----|-||||||--|||--+||-||+
TTGAATTTTGTCAAATGCTTTTTCTGCATCTATTGAGATGATCATATGATTTTTCTCCTTTANYCTGTTR

GAGTGATGAATTACATCAACAGATTCTT
--||--||-||-||||--+--||||-||
ATGTAGTGWATCACATTGRTTGATTTTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	2097	2187	L1ME_ORF2	2886	2983	d	0.80	0.82	460

AGACCTAAATGTAAGACCTTAAACTATAAAACTCTTAGA-GAAAACACAGGGGAAAAT------GACATC
||||||||||||||-|-||-|||||||||||||+|||||-|||||||-|||-||||||------|||-|-
AGACCTAAATGTAAAANCTAAAACTATAAAACTYTTAGAAGAAAACATAGGAGAAAATCTTCGTGACCTT

GAATTTGTCAGTGATTTCTTGGATATAA
|--+|-|-||--||||||||-|||||-|
GGGYTAGGCAAWGATTTCTTAGATATGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.6.Contig3838_Contig6523	1147	1374	L1ME_ORF2	632	879	c	0.69	0.70	237

TTTTGCTATTTTTCAAAAATTGTTTTATGTGTAGTATTTTTTCTTGAATTTTCTTCTTAAGTATTTTTAG
|||-|||---|--||-|||||-|||-||-|||-||+||||---||--||||--|||--||-|||||||--
TTTAGCTGCATCCCATAAATT-TTTGATATGTTGTRTTTTCATTTTCATTTATTTCA-AAATATTTTT--

TATAATTTTTCTTGTATTTTCTTTTT-----CA-GAATT-TTTAG---TATTTTTGTATATATTT-----
--||||||-||||-|--||||||-||-----||-||-||-|||||---|||-||-||-||-||||-----
--TAATTTCTCTTTTGATTTCTTCTTTGACCCATGAGTTATTTAGAAGTATGTT-GTTTA-ATTTCCAAG

--TTTGT-TACTTT--AGAATAT-TTCTTGTTAT--ATTTTAAGTTTGCTATTTAATTTTT-------AA
--|||||--|-|||--|||-|||-||-|||||||--||||--|-|||--||||--|||-|--------||
TATTTGTGNATTTTCCAGAGTATCTTTTTGTTATTGATTTCTAWTTT--TATTCCATTGTGGTCAGAGAA

TGTATTTTTTATTCGTGTAAATTTTGTAAATTTGTTGGTATATATTTT
--||-|||-|||---|--||-||||-|||||||-|||--|--|-||||
CATACTTTGTATRATTTCAATTTTTTTAAATTTATTGAGACTTGTTTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
csa.U11.1.paired_scaffold_106	2058	2149	L1-99ext_Cis	421	516	d	0.78	0.78	419

CCGGTCAGTCTGGCGGTTAAGTGTGTCGCATTTC----GAAAGGTTGCGGGTGAGAAACTGGTCGCTAGC
|||-|-|||||||-||||-||||-|-|-|-||||----||||||||||-|||--||||-|||||||-||-
CCGCTTAGTCTGGTGGTTTAGTGCGACACCTTTCAACCGAAAGGTTGCAGGTTCGAAATTGGTCGCAAGA

TAGTCGGTTGTGTCCTTGGACAAAAC
|||||||||-|||-|||||-|||--|
TAGTCGGTTATGTTCTTGGGCAAGGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dan.U11.1.2448814	885	957	ISFUN1	74	146	d	0.89	0.89	484

CCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGC-ATGTCCGTCTGTCTGT
||||||||||||||||||||||||||||-||||-|--|-||||||||-|||||-||||||||||||||||
CCTATAAAGTATATATATTCTTGATCAGTATCAACAGCCGAGTCGAT-TGAGCCATGTCCGTCTGTCTGT

CGGT
|-||
CTGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.2.Contig6654_Contig5965	72	170	CEREBA_HV_I	1460	1552	d	0.74	0.74	275

CTGCTGTTGCTG-TGTTGTTGGTTGACGCCGCTGCTGCTGCTGCTGACGCTGCTCCCGTCACCGCCGA-C
||||||-|||||-||-||-||--||---|-|||||||||||||||||-|-|-||------||-||-||-|
CTGCTGCTGCTGGTGCTGGTG-CTGGTACTGCTGCTGCTGCTGCTGAGGTTTCT------ACGGCTGAGC

ACCACCACGGACGATGATGATGATGACGATG
|-||--|-|-|--|||||||||||-||||||
AGCATGATG-ATTATGATGATGATTACGATG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.2.Contig6654_Contig5965	192	251	Copia1-I_CR	1326	1381	c	0.75	0.75	193

CTGCTGCTGTGGCCACCGCCAAGGCAGCGCCAGCTGCCACCGCTGCCGCCGCCGCTGCGG
||||-||-|---||||||||----||||-|||||||-|-|-|||||-||-|-|-||||||
CTGCCGCCGGCACCACCGCC----CAGCCCCAGCTGACCCTGCTGCTGCTGTCCCTGCGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.2.Contig6654_Contig5965	1390	1450	TE2-5_CR	57	114	d	0.69	0.69	197

GTGTATCCGAGAGTGTGGTGCGGGCGGGGTGGGGCGGGGTGGGGTGGGGTGGGAGGTGATG
|||---||--||-||-||||-|||---|-|||||-||||||||-|||--|||--|-||-||
GTGCGCCCCGGAATGCGGTGTGGG---GATGGGGTGGGGTGGGATGGACTGGCGGATGGTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.2.Contig6654_Contig5965	2157	2199	OSHOOTER	241	284	d	0.80	0.80	189

CTCTGCCACGGCCACCGCCACCGCCACTGCC-TCTGCTGTGGCC
|||-||--|||||||||||-|||||-|||||-||-|||--||||
CTCGGCTTCGGCCACCGCCGCCGCCGCTGCCCTCGGCTTCGGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.5.chr1	1204	1308	MDR2	5685	5789	c	0.72	0.72	368

ATTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTNCATGCNNTTCACCTCCT-CCTCCTCCTCTTCTTCTTC
||-|-|||||||-||----|||||-|||-|||-|-|-|---|||-|||||-|||||-||||||--||||-
ATCCGCCTCCTCTTCTCTGTCCTCATCC-CCTTCTTCCTCCTCATCTCCTTCCTCCGCCTCTTTGTCTTG

TTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTC
-||--|||||||-||--||-|||||-|||||||-||
CTCGCCCTCCTCGTCACCCACCTCCCCTTCTTCATC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.1.gnl|ti|330798991	799	904	MDR2	5680	5792	c	0.66	0.66	254

CTCATACTACTTCTTATGTTT-TCCTCATTCTCTTGCTCCTACTCATTTCTCTTCTCC--TTCTTCGT--
|||||-|--||-||--|-|-|-|||||||-|-|||--||||-|||||-||--|-||||---||||-||--
CTCATCCGCCTCCTCTTCTCTGTCCTCATCCCCTTCTTCCTCCTCATCTCCTTCCTCCGCCTCTTTGTCT

-GATC-TTCTTCTCCTAATCCTCCTCCCCTTTTCCTTCTTCTT
-|-||---||-|||-|-|-||-|||||||||-|-|-||--|-|
TGCTCGCCCTCCTCGTCACCCACCTCCCCTTCTTCATCCCCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.2.gnl|ti|252663728	485	590	MDR2	5680	5792	c	0.66	0.66	254

CTCATACTACTTCTTATGTTT-TCCTCATTCTCTTGCTCCTACTCATTTCTCTTCTCC--TTCTTCGT--
|||||-|--||-||--|-|-|-|||||||-|-|||--||||-|||||-||--|-||||---||||-||--
CTCATCCGCCTCCTCTTCTCTGTCCTCATCCCCTTCTTCCTCCTCATCTCCTTCCTCCGCCTCTTTGTCT

-GATC-TTCTTCTCCTAATCCTCCTCCCCTTTTCCTTCTTCTT
-|-||---||-|||-|-|-||-|||||||||-|-|-||--|-|
TGCTCGCCCTCCTCGTCACCCACCTCCCCTTCTTCATCCCCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.4.Contig1828_Contig8101	1032	1074	MDR2	5950	5997	c	0.82	0.82	220

CCATACATC-----CATTCACCCATCCATCCACCCATTCATCCATGCA
||||-||||-----|||-||-|-|||||||||-|||||-|-|||||||
CCATGCATCAAGTCCATCCATCTATCCATCCATCCATTGAACCATGCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	2	36	MDR2	5730	5764	d	0.80	0.80	201

GAGGGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGA
||||-||||||||-|||-||-||-|||||||--||
GAGGCGGAGGAAGGAGATGAGGAGGAAGAAGGGGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.5.chr8	441	645	L1P_MA2	6433	6638	d	0.74	0.75	767

GGGGAAAATCTTCATGATGCTGGATTTGG-TAATGATTTCTTCGCTATGATACC--AAAAGCATAGGCAA
|||||||-|||-||-||---|||||||||--||-||||||||---||--|||||--|-|||||-||||||
GGGGAAACTCTCCAGGACATTGGATTTGGGCAAAGATTTCTTGAGTA--ATACCCCACAAGCACAGGCAA

CAAAAGAAAAAAATAGATAAATTAGACTTCATCAAGGTTAAAAACGCTTGTGTAT--TAAAGGGCACAAT
|-||||-|||||-|-||-||||--||---+||||||-|||||||-||||-||-|----|||||--|||||
CCAAAGCAAAAA-TGGACAAATGGGATCAYATCAAG-TTAAAAA-GCTTCTGCACAGCAAAGGAAACAAT

CAACAGAGTGAAAAGTCAACCCATGGAATGGGAGAAAATATTTTCAAATAATGTGTTTGATAAAG-ATTA
|||||-||||||-||-|||-+||--||||||||||||||||||-||||--|----|-|||-||-|-||||
CAACAAAGTGAAGAGACAATYCACAGAATGGGAGAAAATATTTGCAAACTACCCATCTGACAAGGGATTA

A
|
A

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.4.Contig1828_Contig8101	1526	1605	L1P_MA2	4469	4549	d	0.75	0.75	243

AAAGCCAAAAGAAAACCAAGCTGGCGGAAATACTAGTAGAAAACAAATAAAAACGAACAG----GAAATA
|||||-||-||-|||||||-|---|--||-||-|||-||||||-||||||-||-||-|||----||||||
AAAGC-AAGAGCAAACCAAACC--CAAAATTAGTAGAAGAAAATAAATAATAAAGATCAGAGCAGAAATA

ACTAAAATTAAGAT
|-|-|||||-|-||
AATGAAATTGAAAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.5.Contig2645_Contig5905	1174	2045	ROO_I	5216	6127	d	0.72	0.72	2542

CCCGTTTCCAAATACAGGAA------ACGCCGGGCCTTACTATATCCGATGCTCTCAAAACCG-GGGCAG
||||||||--|||||-||||------||||-||-|||||-|||-|---|||-||--||||-||-||-||-
CCCGTTTCTTAATACTGGAATAGATTACGCAGGTCCTTATTATGTTAAATGTTCAAAAAATCGTGGCCAA

CAATCCTATAAGTGATATATTGCCGTATTCGTGAGCATGGCGACAAAAGCTATTCATTTGGAAGTAGTCA
-||-|-|-|||--||||--||||-||||||||--|||||||-||-|||||-||-||-||-|||-|-||-|
AAAACATTTAAAGGATACGTTGCTGTATTCGTTTGCATGGCCACCAAAGCCATACACTTAGAAATGGTAA

CCGAAGTTACTTCAGATGCATTTCTGGCTTCACCTAGAAGATTT-TCTCAAGAAGAGGAAAATGTGCAAA
-|||--|-||||||||-||||||-|-||--|||--|||||||||-|--|-|||-|-|||||||||-|-||
GCGATCTAACTTCAGACGCATTTTTAGCAGCACTCAGAAGATTTATTGCTAGACGGGGAAAATGTTCCAA

AATCTTTTCAGGTAATG-AACCAACTTTGTGGGAGCTTCGCGCAAATTAAAAGTCGAATATCAAAGAGCC
-||||-|||||--||-|-|||-||-|||||-||||||-|--|-||||||-|--||--------|||||--
TATCTATTCAGACAACGGAACAAATTTTGTAGGAGCTGCAAGAAAATTAGA--TC--------AAGAGTT

CTT-----------AAGAAAAACATAA-AAGTGGTGC-CAATATTAGAAAGAGAACAG-ATCGAGTGGCA
-||-----------|||||||--||||--|-||--||-||---||-||||-||-||||-||-||-|||||
ATTTAATGCAATACAAGAAAA-TATAACGATTGCAGCGCAGC-TT-GAAA-AGGACAGGATTGATTGGCA

CTTCATTTCCCCGGCAGGACCTCATTTCGGAAGTATTTGGGAAGCTGGGGTAAAATCAGTGAAATATCAC
-||-|||-||||||||||||||||-||||||-||||||||||||||||-||-||-|||-|||||||-||-
TTTTATTCCCCCGGCAGGACCTCACTTCGGAGGTATTTGGGAAGCTGGAGTTAAGTCAATGAAATACCAT

TTGAAAAGAGTAATTGGGGACAATAATTTAACCTATGAGGAAATGTCCACTCCATTATGTCAAATGGAAG
||-||--|--||||-||-||||-||-|||-||-||-||-||||||||-||||--|||||||||||-||||
TTAAAGCGTATAATCGGCGACACTATTTTGACTTACGAAGAAATGTCAACTCTTTTATGTCAAATAGAAG

CGGTATTAAATTCACGCCCTTTGCA-GCTACA---AATGATATTGACGATCTGGATGTATTAACACCAGT
|----|||||||||-|-||-||--|--|||-|---|-|||-|--|||-|-|--||-||-||||||||||-
CATGCTTAAATTCAAGGCCATTATACACTATAGTTAGTGAGAAGGACCAACAAGAAGTTTTAACACCAGG

TAATTTTATTATTGGAATGCCA---------ATATTTGGCCCGATT-AAGAC------------AATTTG
|-|||||-|-|||||||--|||---------|||-|-|--||-||--||||-------------||||||
TCATTTTTTAATTGGAAGACCACCTTTAGAAATAGTCGAACCAATGGAAGATGAAAAAATCGGAAATTTG

------TGGAGACTAATTCAGAAAATGAAAAGAGAATTTTGGATTAAACGGAAAGAAGATTATTTGCACA
------||||||||-||-||-||||||||-|-|||-||-|||-||||--|||||---||-||||||||-|
GATAGGTGGAGACTTATCCAAAAAATGAAGAAAGATTTCTGGGTTAAGTGGAAAAGTGAATATTTGCATA

CACTGCAACAAAGAAATAAATGGAAAATAGGAACGCAGAATATTAAAAAGGGACAGATTGTATTAATAAA
|-||-||-|||||-|||||||||||||--|-||--|--|||||--||-|-||-||-||-||-|||-||||
CGCTCCAGCAAAGGAATAAATGGAAAAAGGAAATTCCTAATATAGAAGAAGGGCAAATAGTTTTATTAAA

AAAAAGAAAACTGTCACCCAGCTATATGGTCCTTTGGAAAAATAGAAGAAATACATAAAGGTAAGGACGA
--|--||-||-|||||-||-||-|-||||-|-||-|||||--|-|||-|--|-|||||-||-||-||-||
GGAT-GAGAATTGTCATCCTGCAAGATGGCCTTTAGGAAAGGTGGAAAAGGTGCATAAGGGGAATGATGA

TAGAGTCAGAGTAGTAACTATA--AAACAT-CAAGACGGGTTGATAAAAC--GACCTATAACTAAAATTT
||--|||-||||-|---|||-|--|||-||-||-||-||-|--|||--||--||||-||-||||||||||
TAAGGTCCGAGTGG---CTAAAGTAAAGATGCAGGAAGGAT--ATATCACTAGACCCATTACTAAAATTT

TTCCATTAGCTGGAATTGAGTC
-|||-||-|--|||||--||||
GTCCCTTGGAAGGAATAAAGTC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.5.Contig2645_Contig5905	1035	1167	ROO_I	5029	5162	d	0.76	0.76	538

ATAAAGAAACATTGCACGGTGGAATTAATCTGATGCGAAACTATATCCAGCGAAAATTTTGG-TATTTGG
||||-|||||||||||-||-||-||-||-||-|||||||||||||||||--||||-|-||||-|-||-||
ATAAGGAAACATTGCATGGAGGGATAAACCTAATGCGAAACTATATCCAAAGAAAGTATTGGATTTTCGG

GCTACGAAATTTCTTAAAGAAAAAACTTTAAGAG--TTTGTCACCTGTGCTAGGTGTAGACAAAAT
|-|---|||||--||-||-||--|--||||||||--|-|||-||-|||||-||||-||-|||||||
GTTGAAAAATTCGTTGAAAAAGTA--TTTAAGAGAATGTGTAACGTGTGCAAGGTATAAACAAAAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.5.Contig2645_Contig5905	520	1026	ROO_I	4379	4888	d	0.65	0.65	536

GATAAAGAATGGAGACAATAAAGACAAGTTTATCAGGCGTCGAACTGACGAAGTAAGAAAAATTAAAGAA
|||-||-|-|||--|-|-|||---|||-|||||-|---|--||||-||-||--|--|-|||-|||||-||
GATTAACAGTGGTCAAAGTAAGATCAAATTTATAAAAAGAAGAACGGATGACATTCGGAAA-TTAAAAAA

-ATTAAATGGGGACACGTTAGAACTGAAGACATTCCATCAGATGTAGGATCAAGGGGCATTAGTG-----
-|-|-|||||---||-||||---|-||-||-|-||||-|||||-|||-|||-|||||----||||-----
TACTGAATGGAATCATGTTAAGTCAGAGGATAATCCAGCAGATTTAGCATCCAGGGG----AGTGGATTC

----CAGGTAAGCTACAA-GATTTTAAGATTTGGTGGATAGGGCCTCAATGGTTGGCGAAATCTAAGGAA
----|||-|-|-|-||---||||||------|||||||-|||-||--|||||-|-||--|--|-||-|||
TAACCAGTTGATCAACTGTGATTTT------TGGTGGAAAGGTCCGAAATGGCTAGCAGACCCAAAAGAA

CACTGGCCAAAAGAGGAAATTGAAGAAAAATTAGTTGTTGGCACAACA----ATTGTAATAGCAAAA--A
|--|||||-----||-|---||-||||-||---||--||---|-||-|----|||--|||--|||||---
CTTTGGCCTCGGCAGCAGTCTGTAGAAGAACCTGTC-TTAATA-AATACGGTATTA-AATGACAAAATAG

ATAACATTTTGTATGAATTATTACAAAAATATTCGTGTATACATAAACTAGAAAGAGTCATTGTATATGT
||-|---|-|-||-||||||-||-|||--|||||--|||||-|-|||||---|-|--|-||-|-|||--|
ATGATCCTATTTACGAATTAATAGAAAGGTATTCCAGTATAGAAAAACTTATACGTATAATAGCATACAT

ATTGAAGTTTATTCAAATCAAAACCAAAAAGAAAGAAT-TTCCTCCATT-TTTGACAGTGAAGGAGATTA
|---|--||--|-||-||-|||||-|-|||-||||--|-|||-||-|||-|||--||||-||||||||-|
AAATAGATTCGTGCAGATGAAAACAAGAAATAAAGCCTATTCATCAATTATTT--CAGTAAAGGAGAT-A

AGA---GCGCCAA-AGT----ATTAACAGTAAAACAACAACAAGCTATCCAATTCAGTTCCGAAATAG-C
|||---|||--||-|||----|||||-----|||||||||-||--||-|||-||-||----||-|||---
AGAATAGCGGAAACAGTTGTTATTAA----GAAACAACAAGAA--TA-CCAGTTTAGGCAAGAGATAAAG

TATCCTAATTAAT-AAAAAGAAAGTAGAAACAAAAAATAAATTATT
|--|-|||--|||-||||||-||-|--|-|||||-||||||-||||
TGCCTTAA--AATCAAAAAGGAAATCAAGACAAATAATAAAATATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.5.Contig2645_Contig5905	2062	2200	ROO_I	6639	6777	d	0.70	0.70	413

TTGGAAGGAAATATGAAAAATTTATTAGAAAACCAACATAACTTAGATGATTCAATTAAGAAACAAACAT
||-||||-|||||||||-|||||-|||||-|||||--|-|||-|-|||-|---||||-|-||||||||||
TTAGAAGAAAATATGAAGAATTTGTTAGATAACCAGAACAACCTTGATAAACTAATTCAAAAACAAACAT

CCGTGGTAAAGTCAACGGTAAATATCCTCATAAGAGCTACCGAGGAAATAAATGTGAACTTTAGAAGTA
|-|||||--|-|||||----|||-|--|-|--|||-|-||-||-||--|-||----||-||||||||||
CTGTGGTTGATTCAACTTCTAATCTATTAAAGAGAACAACAGAAGATGTTAACTCCAATTTTAGAAGTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.6.Contig3838_Contig6523	303	466	GRANDE1_ZD	11553	11714	d	0.69	0.69	248

CCGCTGCCGCCGCCACTGCCGCCGCCGCCGCTGCTGCCGCTTGCCGCTTCCGCCATGCCCCTTGCCCTCG
|-|-|||-||||||-|-||--|||||---|-|||||||-|||||-|||-|||||--|--|--|||||--|
CTGTTGCTGCCGCCGCCGCTACCGCCCTTGGTGCTGCC-CTTGCTGCTGCCGCCCCGGTCGCTGCCCCTG

TTCGGGTTGTCGGCTTGTCG-----GCCAGCACGGAAATCATTTGATTCCATGCCCCCACCG--GCCGTC
-|---|-||-||--|-||||-----|||--|-|-|--------||---||-||||-||-|||--||||||
CTGCCGCTGCCG--TCGTCGTCCTTGCCGCCGCCG-------CTG--CCCCTGCCGCCGCCGCTGCCGTC

CCC-----CATTCCGT-GTCGTGCCTCGTCCTCGCCG
-||-----|||--|||-|||||-|-||||||||||||
ACCGTCGCCAT--CGTCGTCGT-CTTCGTCCTCGCCG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.6.Contig3838_Contig6523	1729	1777	L1-3_CR	267	324	c	0.80	0.80	205

GGCTGGGGTTGGGGCTGGGGCTGGGG---------CTGGGGCTGGGGCTGTGGCTGGG
|||-|||--|--|||||-||||||||---------|||-||||||||--|||||||||
GGCCGGGACTAAGGCTGAGGCTGGGGAGGAGGAGGCTGAGGCTGGGGAGGTGGCTGGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.6.Contig3838_Contig6523	1884	1934	AGM1	394	457	c	0.83	0.83	246

CACACACGCACACGCACACAAAA-------------CACACACACACATACACACATACACCAA
|||||-|||||||||||||||||-------------||--|||||||--||||-||-|||-|||
CACACGCGCACACGCACACAAAATCCTAGCCAGCTCCAAGCACACACTCACACGCACACAGCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.7.Contig5305_Contig6323	2	159	WORF_DMi	4015	4174	d	0.86	0.86	884

ACCTTAAACCCTGAACTATCGCTTAAATAAATAGCATGCAATATTTATAATCACCTCAATTTAACTAACT
|||-||--|||||||||-||-||||||--|||-||||||||||||||||||||--|-||||||-||||||
ACCCTATCCCCTGAACTGTCTCTTAAACTAATTGCATGCAATATTTATAATCATTTAAATTTAGCTAACT

TTTAACTTCTCTTTTTTCCTCCTTTTGTAATTAAGTACCATTATTAACAGATAATT-GTTAATTTAATAA
||||||||-|||||||-|--|||||-||||-|||||||||||||||||||||||||-|||||||||||||
TTTAACTTATCTTTTT-CTGCCTTTAGTAACTAAGTACCATTATTAACAGATAATTTGTTAATTTAATAA

AATAATAAA--AATAAATAAA
|--||||||--||||||||||
ATAAATAAATAAATAAATAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.7.Contig5305_Contig6323	160	345	BILBO	3100	3297	d	0.77	0.77	800

ATAAGCTGGGCAATAAACAGCTTCAACCCGTTCAAATCCCCAGGCCC-----AAGTC--CCCAATTCAG-
||||||||||||-||||||||||-||--|-|-||||||-||-|||||-----|||||---||---||||-
ATAAGCTGGGCAGTAAACAGCTTTAAATCCTACAAATCGCCTGGCCCGGACCAAGTCATTCCGGCTCAGC

-----AAGGCCGTGGAAACGGCCATCAACTGGCTTCAAGGTATCTTCAGACAGAAACTGGCTGTAGGCAC
-----||-||||-|||---|||||||||||||||-|||-||||||||||--|||-||||-|-||-||-|-
TACAAAAAGCCGGGGACGTGGCCATCAACTGGCTGCAAAGTATCTTCAGGAAGATACTGACAGTGGGAAA

AATCACGCGAGCTTGGCTTAAGGCAAAGATAGTCTTCATCGCCAAAGCAGGGGAAATCC
||||-|-||-||||||||-|||||-||-||||||||-||--||||-|||||--|||-||
AATCCCCCGCGCTTGGCTAAAGGCTAAAATAGTCTTTATACCCAAGGCAGGA-AAACCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dps.U11.7.Contig5305_Contig6323	1996	2156	TransibN1_DP	1034	1194	c	0.93	0.93	1098

CACTATGGTCCGAGCGACCACTTTTGATGGCCAAAATAAATAACTCCCGAACGGAGCAAGATTTTTT-AT
|||||||||||||-||||||||||||-||||||||||-|||||||||||||||||-|||||||||||-||
CACTATGGTCCGAACGACCACTTTTGTTGGCCAAAATTAATAACTCCCGAACGGAACAAGATTTTTTCAT

TTAGTTTTTGGTATTGGATATACATATATAATCAATAAG---TGGATTTAAGAAAAAAAAATGGGTGTGG
|||||||||-||||||||||||----|||||||||||||---||||||||||||||||||-|||||||||
TTAGTTTTTTGTATTGGATATA----TATAATCAATAAGAAATGGATTTAAGAAAAAAAA-TGGGTGTGG

CACCGCTC-TTATTTTAATAATGCAT
||||||-|-||-||||||||||||||
CACCGCCCCTTTTTTTAATAATGCAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.1.chrUn	3	123	TOL2_OL	3907	4026	d	0.71	0.71	292

TTTTTACTCCTACTTTGAGTAATGTTTACAACAGGTACTTTTACTCT-ACTCACACTAAATATTTAGGC-
||||||||--||||---|||||--||-----|||-||||||||||-|-|-|---|-||||-||||---|-
TTTTTACTTTTACTC-AAGTAAGATTCTAGCCAGATACTTTTACTTTTAATTG-AGTAAA-ATTTTCCCT

AAGTAATGGTACTTTTACTTAAGTATGCTTTTTCAGTACTCTTTCCACCACTG
|||||-|-|||||||-||||-||||---|||||-||||||-|||-||||-|||
AAGTACTTGTACTTTCACTTGAGTAAAATTTTTGAGTACTTTTTACACCTCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.4.chr25	1885	2200	TDR18	7	323	c	0.93	0.93	2310

ACAGTCTACAGAACAAACCATCATTATACAATAACTTGCCTAATTTCCCTAACTTGCCTAGTTAACCTAA
|-||||||||||||||||||||-||||||||||||||||||||||-|||||||-||||||||||||||||
ATAGTCTACAGAACAAACCATCGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAA

TTAACCTACTGTAGTTAATCCTTTAAATGTCGCTTT--GTTGTATAGAAGTGTCTTGAAAAACATCTAGT
||||||||-----|||||-||||||||||||-||||--|-||||||||||||||||||||||-|||||||
TTAACCTA-----GTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGT

CAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATTAATTATTAAAACTA
-||||||||||||||||||||||||||||||||||||||||||||||||||||||-|-||||||||||||
MAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGAGTTATTAAAACTA

TTATATTTAGAAATGTGTTGAAAATA----TATTTTCTCCGTTAAACAGAAATTGGGGGAAAAAATAAAC
||||-|||||||||||||||||||-|----|-||-|||||||||||||||||||||||-|||||||||||
TTATGTTTAGAAATGTGTTGAAAAAAAAAATCTTCTCTCCGTTAAACAGAAATTGGGGAAAAAAATAAAC

AAGGGGGCTAAAAATTCAGGGGGGCTAATAATTCTGCCTTCA
|-|||||||||-||||||||||||||||||||||||-|||||
AGGGGGGCTAATAATTCAGGGGGGCTAATAATTCTGACTTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.1.chrUn	1260	1521	TDR18	37	311	c	0.91	0.91	1772

ATAAATTATTATTATA----AACTTGCCTATTTACCCAAACCTGTTTAATTATCCTAATTAACCTAGTTA
|-|||--||--|||||----||||||||||-||||||-||||||--||-|||-|||||||||||||||||
ACAAACCATCGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAATTAACCTAGTTA

AGCCTTTAAATATCACTTTAAGCTGTATAGAAGTGTTTTGAAAAATATCTA---ACATATTTTTTACTGT
|||||||||||-||||||||||||||||||||||||-||||||||||||||---|-|||||-||||||||
AGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTMAAATATTATTTACTGT

CATCATGGCAAAGATAAAATGAATCAGTTATAAGAAATGAGTTTTTAAAACTTTTATGTTTAGAAATGTG
||||||||||||||||||||-||||||||||-|||||||||||-||||||||-|||||||||||||||||
CATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGTG

TTGAAAAAAA------TCTCTCCGTTTAACAGAAATTGGAGAAAAAAATATACAGGGGGGCTAAT
||||||||||------||||||||||-||||||||||||-||||||||||-||||||||||||||
TTGAAAAAAAAAATCTTCTCTCCGTTAAACAGAAATTGGGGAAAAAAATAAACAGGGGGGCTAAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.4.chr25	1727	1874	TDR18	397	572	c	0.88	0.88	852

ATACAGCTAAAGTCAGAATTATTCTCCCCCCTTTG-TTTTTTTT---------------------AATGA
||||||-|-||||||||||||||--||||||||||-||||||||---------------------|||||
ATACAGTTGAAGTCAGAATTATTAGCCCCCCTTTGATTTTTTTTTTCTTTTTTAAATATTTCCCAAATGA

TGTT----AAAACA-GGACATTTTCACAGTATGTCTGATAATATTTTGTCTTCTGGAAAAAGTTTTATTT
||||----|-|-||-|||-||||||||||||||||||||||||||||-|||||||||-|||||-||||||
TGTTTAACAGAGCAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAGAAAGTCTTATTT

GTTT-ATTTTGGCTAGAGCAAAAGCAGTTTTTAATT
||||-||||-|||||||--|||||||||||||||||
GTTTTATTTCGGCTAGAATAAAAGCAGTTTTTAATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.1.chrUn	1563	1692	TDR18	50	198	d	0.81	0.81	533

TTTATATTTCCCCCTATGTACTGTTTAACATAATG------------TTCTACACATTTCTAAACTTAAT
|||||-|||--|||-|--|-|||||||||--|--|------------|||-||||||||||||||-||||
TTTATTTTTTTCCCCAATTTCTGTTTAACGGAGAGAAGATTTTTTTTTTCAACACATTTCTAAACATAAT

AGTTTTAAT-------TTCTAATAACTGATTTCTTTAATCTTTGCCACGATGAGAGTACATAACATTTTT
|||||||||-------||||||||||||||||-|||-||||||||||-|||||-||||-||||-||||--
AGTTTTAATAACTCATTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTKA

CAAGATACT
|-|||||-|
CTAGATATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.1.chrUn	1992	2129	TDR18	424	572	d	0.78	0.78	413

AAATAAAACAAATTAAACT--CTCTAGAAAAAAAAAAAAAACATACATATATAATCGAAGATACTGAGAA
|||||||||||||-|-|||--|||-||||-||||||-------------|||-|||--|-||||||-|||
AAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAA-------------TATTATCAGACATACTGTGAA

AATTCCCTTGTTCTATTGAAAATCACTTATCAA-TATTT------------------TAAAGGAGGGCTA
||||-|||||-|||-||-||-||||-||---||-|||||-------------------|||||-||||||
AATTTCCTTGCTCTGTTAAACATCATTTGGGAAATATTTAAAAAAGAAAAAAAAAATCAAAGGGGGGCTA

AT---TTTACCCTCAACTGTAT
||---|-|--|-||||||||||
ATAATTCTGACTTCAACTGTAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.1.chrUn	1835	1991	HATN17_DR	334	491	c	0.83	0.83	905

TTATTAAAGTCATT---CATTTATTCATTTTCTTGTCAGCTTAGTCCCTTTGTTAATCTGGGGTCGCCAC
|||-||||-|||||---|-||-||||||||||||-||-|||||||||||||-||||||--|||||-||||
TTAATAAACTCATTATTCTTTCATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCCAGGGTCACCAC

AGCCGAACGAACCGCCAATATATCCAGCAAGATTTTACGCAGCAGATGCCCTTCCAGCCGCAACCCATCT
|||-|||-||||||||||--||||-||||---||||||-||||-||||||||||||||-||||||||||-
AGCAGAATGAACCGCCAACTTATCTAGCACATTTTTACACAGCGGATGCCCTTCCAGCTGCAACCCATCA

CTGGGAAATTATTAAAGTCA
|||||||--||-||||-|||
CTGGGAA--TAATAAACTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.2.chr19	108	304	DNAX-1_DR	12	214	c	0.82	0.82	1067

CACAAACTGGAATTTGTTCAGTAAAAGTGTTTCCATTGCAGTTTATGCGCATCTTTTGTTTTCGAATTTA
|-||--|||||-|||||-|-||||||||||||||||-|-||||||||||||||||||-||-||||||--|
CGCATGCTGGAGTTTGTGCGGTAAAAGTGTTTCCATCGTAGTTTATGCGCATCTTTTCTTATCGAATAAA

AAGATCATCCTTCTCAGTTATGCACAT---TTTATCATGCATATTTTCAAAAGTTAGGTGAATCATGACG
|||-|-|||||-|||||||||||-|||---|||-|-||||--||||||||||-|||-|-|-||||||-||
AAGTTTATCCTACTCAGTTATGCGCATANGTTTTTTATGCGCATTTTCAAAATTTATGCGCATCATGGCG

TTTCCATCAATCATTTTC---ATGCGCAGATCCAAAATGAGCATTAAAATAGGTGGGTGGAAA
||||||||||---||||----|||||||-||-|||||||-||||-|||||||||||-||||||
TTTCCATCAACNGTTTTTTTTATGCGCATATGCAAAATGCGCATAAAAATAGGTGGATGGAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.2.chr19	733	791	DNA-2-3_DR	1083	1142	d	0.95	0.95	404

TGTATAAATAT-TATATATATATATATATATATATATATATATATATATATATATATATT
|-||||-||||-||||||||||||||||||||||||||||||||||||||||||||||||
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.4.chrX	2040	2109	DNA-2-3_DR	1307	1376	c	0.86	0.86	375

TCATTTTATATATATATATATGTATTTATATATATATATGTATGTATATATATATGCATTTATATATATA
|-|||||||||||||||||||-|||-|||||||||||||-|||-||||-||-|||--||||||-||||||
TTATTTTATATATATATATATATATATATATATATATATATATATATACATTTATTTATTTATTTATATA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.2.chr19	1275	1330	ARNOLD4	2101	2158	d	0.78	0.78	205

AAAATATTTGCAAAGATT-TTATTTAAAATAAATTGTTATTTTAAGTAAA--TTTTATT
|||||--|||-|||-||--||||||||-|||-||||-|-|||-|-|||||--|||||||
AAAATCCTTGTAAA-ATCATTATTTAAGATAGATTGATGTTTGAGGTAAACTTTTTATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.2.chr19	1548	1630	REX1_FURC	3246	3324	d	0.75	0.75	196

ATATATTCTATATTTTAATATAATATATTCTATAAT-TTAAAATATAATTTAGTATTTATATTATTCATT
|||||||-||||||-|--||||-|||--|-|||||--||--|||-|-||-|-|||||||||||||||--|
ATATATTATATATTCTG-TATA-TATGCTTTATAACGTTCTAATCTTATCT-GTATTTATATTATTC--T

GATGAAATACTTTG
|-|---||||||||
GTTTCTATACTTTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.2.chr19	1764	1906	ASAT_CY	67	211	c	0.70	0.70	321

AATATTGACTTTAGTAAAATCATTATTAATAACTTATTAACAATAATAA-------TCAAGCACCAAATC
||||||--|---||-|-||---||-|-||-|--||--|||-||||||||-------|--|||||||||||
AATATTAGC---AGCACAACTGTTTTCAACA--TTGATAATAATAATAAATGTTTCTTGAGCACCAAATC

TAAATATTAGAATGATTTTTGCCAG--CAGGTGTCATTGCAGACCAAAGTTATGGCTTTTGAAAAATCAT
---|||||||||||||||-||---|--||-|||-||-||-||||---|||-|||--|--||||||-|||-
AGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGA-TGCTGAAAATTCAG

ATTTGTGATCAC
-||||--|||||
CTTTGC-ATCAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.4.chr25	1157	1514	HE1_DR1	2	375	d	0.85	0.86	2230

GGCGATGCAGTGGTGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGCCTCAGCT
|||||--|-||||--||||-|-|||--|||||||||||||||||||||||-|||||||||||-|-|-|||
GGCGACACGGTGGCTCAGTGGTTAGCACTGTCGCCTCACAGCAAGAAGGTNGCTGGTTCGAGTCCCGGCT

GGGTCAGCTGGTGTTTCTGTGTGGAGTTTACATGTTCTCCCGTCCCAGCGTTTGCGTAGGTTTCCTCCTG
|||||||-|||--||||||||||||||||-|||||||||||--|---|-|||+||||-||||||||||-|
GGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCC--C---GTGTTYGCGTGGGTTTCCTCCGG

GTGGTCCAGTTTCCCCCACAGTCCAAAGACAAGTGGTACAGGTGAATCGGG----CTAAATTGTCAGTAG
|||-|||-|||||||||||||||||||||||-|-|-||-||||||||-||-----||||||||-|-||||
GTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGCTATAGGTGAATTGGATAAACTAAATTGGCCGTAG

TGTATGAGTGTGTGTG-------GAG-----------GTTTCCCAGAGATGGGTTGCAGCTGGAGGGGGC
||||||-|||||||||-------|||-----------|||||||||---|||||||||||||||-|||-|
TGTATGTGTGTGTGTGTGAATGTGAGTGTGTATGGGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGG-C

ATCCGCTGTGTAAAACATATGCTGGATAAGTTGGTGGTTAATTCTGCTGTGGCGACCCTGGATTAATAAA
|||||||||||||||||||||||||||-||||||-||||-||||-|||||||||||||--|||-||||||
ATCCGCTGTGTAAAACATATGCTGGATWAGTTGGCGGTTCATTCCGCTGTGGCGACCCCTGATAAATAAA

-GGGACTAAGCCAAAAAGAAAATGAATGAAA
-||||||||||||||--|||||||||||-||
AGGGACTAAGCCAAAG-GAAAATGAATGGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.4.chr25	783	1118	HE1_DR1	2	386	d	0.85	0.85	2095

GGTGACACTGTGGCTCAATGGTT--------TGCCTCATAGCAAGAAGGTCATTGGTTCGAGT-------
||-|||||-||||||||-|||||---------||||||-|||||||||||---||||||||||-------
GGCGACACGGTGGCTCAGTGGTTAGCACTGTCGCCTCACAGCAAGAAGGTNGCTGGTTCGAGTCCCGGCT

------------------------AGTTTGCATGTTCTCTCTGTGTTGCCGTGGGTTTCCTCCAGGTGCT
------------------------|||||||||||||||-|-|||||--||||||||||||||-||||||
GGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTYGCGTGGGTTTCCTCCGGGTGCT

CCGGTTTCCCCCACAGTCCAAAGAAATTTGCTGTAGTTGAATTTAATAAACTAAATTGGCTGT------T
||||||||||||||||||||||||-||--|||-|||-||||||--|||||||||||||||-||------|
CCGGTTTCCCCCACAGTCCAAAGACATGCGCTATAGGTGAATTGGATAAACTAAATTGGCCGTAGTGTAT

GTGTGTGTGTGTGAATATGAGTGTGTA--AGTGTTTCCCGGTACTGGTTTGCAGCTAAAAGGGCTTCTGC
||||||||||||||||-||||||||||---|||||||||-|||||||-||||||||--||||||-||-||
GTGTGTGTGTGTGAATGTGAGTGTGTATGGGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCATCCGC

TGTGTAAAACATATGCTGGAATAGTTAGTGGTTCATTCCACTCTGGCAACCCCTGATGAATAAA-GGGAC
||||||||||||||||||||--||||-|-||||||||||-||-||||-|||||||||-||||||-|||||
TGTGTAAAACATATGCTGGATWAGTTGGCGGTTCATTCCGCTGTGGCGACCCCTGATAAATAAAAGGGAC

TAAGTCGAAGGAAATTAAATG-AACAAATGAATAT
||||-|-|||||||-|-||||-||--|||-|||||
TAAGCCAAAGGAAAATGAATGGAATGAATNAATAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.3.chr1	489	710	HE1_DR1	137	386	c	0.87	0.87	1378

ATACACATTTATTCAAT-CATTTTCCTATGGCTTAGTCTCT---ATTT--CAGAGGTCACCACAGCGGAC
|||---|||-||||-||-|||||||||-||||||||||-||---||||--|||-||||-||||||||||-
ATATTNATTCATTCCATTCATTTTCCTTTGGCTTAGTCCCTTTTATTTATCAGGGGTCGCCACAGCGGAA

TGAACCGACAACTTATCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCTGCAACCCATCACTAGGA
|||||||-|||||-|||||||||||||||||||||||||||||||||||||||||||||||--|||-|||
TGAACCGCCAACTWATCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCTGCAACCCAGTACTGGGA

AACATCCATACACACTT-----------CACACACATACACTACAGACAATTTAG-------------CC
||||-|||||||||||------------||||||||||||||||-|-||||||||-------------||
AACACCCATACACACTCACATTCACACACACACACATACACTACGGCCAATTTAGTTTATCCAATTCACC

TACACCACATGTTTTTTGGACTTGTGGGGGAAACCGGAGCAC
||-|-|-|||||-|||-|||||-|||||||||||||||||||
TATAGCGCATGTCTTT-GGACT-GTGGGGGAAACCGGAGCAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.2.chr19	1954	2101	HE1_DR1	243	392	c	0.85	0.85	972

AAAATT-CATTTGTTCATTC-ATTTATTTTCTTTTTGGATTAGTCC-TTTTATTAATTAGGGGTTGTCAC
||||||--|||--|||||||-|||-||||||-|||-||-|||||||-|||||||-||-||||||-|-|||
AAAATTATATTNATTCATTCCATTCATTTTCCTTT-GGCTTAGTCCCTTTTATTTATCAGGGGTCGCCAC

AGCGGAATAACCCGCCAACTTATCCAGCATATGTTTTACACAGCAGATGTCCTTCCAGCCGCAACCCATC
||||||||-|-|||||||||-|||||||||||||||||||||||-||||-|||||||||-||||||||--
AGCGGAATGAACCGCCAACTWATCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCTGCAACCCAGT

ACTGGGAAACA
|||||||||||
ACTGGGAAACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.3.chr1	85	145	CR1-1_DR	4916	4975	d	0.79	0.79	275

TAAAGCTGCTTTGAAACAATAATTATTGTGAAAAGCACTATACAGATAACCTTGAACTGAA
|-||||||||||||-|||||----|||||-||||||-|||||||-||||---||||-||||
TGAAGCTGCTTTGACACAATCTACATTGT-AAAAGCGCTATACAAATAAAGCTGAATTGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dre.U11.3.chr1	1303	1646	DANA	1	394	c	0.88	0.88	1774

TTTTCTTGTCGGATTAGTCCCTTTATTAATCCGGGGTTGCCACAGCGGAATGAACCGCCAACTTTT----
|||||||-|-||-|||||||||||||||||||-||||--|||||||||||||||||||||||||-|----
TTTTCTTTTTGGCTTAGTCCCTTTATTAATCCAGGGTCACCACAGCGGAATGAACCGCCAACTTATCCAG

-----TTTCAAGCAAGTTTTTACGC-------AGCGGATGCCCTTCCATCCGCAACCCGTCTCTGGGAAA
-----|||-||-|||||||||-----------|||||||--|||||||-|||||||||-||-||||||||
CAAGTTTTTAATCAAGTTTTTTTTTTAGTTTTAGCGGATCGCCTTCCAGCCGCAACCCATCGCTGGGAAA

CATCCACACAAACATTCACAAACACACACACACTCATACACTACGGACAATTTAGCCTACCCAATTCACC
||||||||||-|||||||||--------||||||||||||||||||||||||||||||||||||||||||
CATCCACACACACATTCACA--------CACACTCATACACTACGGACAATTTAGCCTACCCAATTCACC

TGTACAGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAAGGCAGGGAGA
|||||--||||-|||-||||||||||||||--||||||||||||||||||||||-|-|||-|||||||||
TGTACCACATGCCTTAGGACTGTGGGGGAA--CGGAGCACCCGGAGGAAACCCATG-GAACGCAGGGAGA

ACATGCAAACTCCACAC---------------------------CAG------------------CGACC
|||||||||||||||||---------------------------||-------------------|||-|
ACATGCAAACTCCACACAGAAACGCCAACTGAGCGAGGCTCGTTCAAACCTTGTTAACCGAGGCTCGAAC

CAGTGACCTTTTTGCTGTGAGGCGACAGCACTACCCACTGCGCCACTGCCTCACC
|||-||-|||-|||||||||||||||||||||-||||||||||||||||-||-||
CAGCGAGCTTCTTGCTGTGAGGCGACAGCACTTCCCACTGCGCCACTGCGTCGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dvi.U11.1.scaffold_9	1915	2058	GYPSY2-I_MT	1231	1369	c	0.74	0.74	394

ACATGCTTGCATACATGCATGCATTCATACATGCATTCATACATGCATACATGCCTGCATTCATACATGT
|||||-|---|||||--||||||-||||||||----|||-|||--||-||||-|-|-||||||||||---
ACATG-TCATATACAGTCATGCAGTCATACAT----TCACACAGTCACACATTCATACATTCATACA---

ATGCATGCATGCATC--CATTCTTACATA--CATACATATATACATACATA-CAAACTTACAAACATACA
||-|||||||-||||---|||-|-|||||--|||||-|-|||||-||||-|-||-|---||||-|||--|
AT-CATGCATTCATCAATATTTTCACATATTCATACGTTTATACGTACACATCATATGCACAA-CATCAA

TGCATACAT
|-||-||||
TTCACACAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dvi.U11.1.scaffold_9	1871	1914	GYPSY2-I_MT	1299	1342	c	0.77	0.77	195

ACATGTATACATGCATGCATTCATACATGCATACATGCATGCAT
||||--|-|||--||--|||||||||||-||||||--|||||||
ACATTCACACAGTCACACATTCATACATTCATACAATCATGCAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dvi.U11.1.scaffold_9	2063	2146	ENSPM3_OS	10143	10233	c	0.69	0.69	219

ACACACATACATACATACATACAAACAT--ACATA---CATACACCTACATACACACATACATCTACATA
|-|||-||-|||-||-|-|-|||-||||--|||||---||-|||-|-|||-|--||||--|||||-||||
ATACATATGCATTCACATACACAGACATCAACATATTTCACACAACCACACATTCACAGCCATCT-CATA

---CATTTCTACTTATATACTT
---||--||-|-|-|-|||-||
TTTCACATCCATTCACATATTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	1387	1820	DNAREP1_DM	161	594	c	0.93	0.93	3122

TTATACCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGCTGAAAAGTATTTTACAGGCAGAAGGAA
||||||||||||||||||||||||||||||||||||||||||-||||||||||-|-||||||||||||||
TTATACCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAA

GCGTTTCCGACCATATAAAGTATAT--------------ATATTCTTGATCAGGATCAATAGCCGAGTCG
|||||||||||||||||||||||||--------------|||||||||||||||||||||||||||||||
GCGTTTCCGACCATATAAAGTATATTTATATATATATATATATTCTTGATCAGGATCAATAGCCGAGTCG

ATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGTATGAACGTCAAGATCTCAGGAACTACAAAA
||-|||||||||||||||||||||----------------|||||||||-|||||||||||||||-||||
ATCTGGCCATGTCCGTCTGTCCGT----------------ATGAACGTCGAGATCTCAGGAACTATAAAA

GCTAGAACGTTGAGATTAAGCATACAGACTCCAGGGACATAGACGCAGCGCAAGTTT--CGAATCATGCT
|||||||-||||||||||||||||||||-||-||-||||||||||||||||||||||---||--||||-|
GCTAGAAGGTTGAGATTAAGCATACAGATTCTAGAGACATAGACGCAGCGCAAGTTTGTTGACCCATGTT

GCCACGCCCAATCTAACGCCCACAAACCGCCCAAAGCTGCCACGCCCGCACTTTT-AAAAAATGTTTTGA
||||||||||-||||||||||||||||||||||||-|||||||||||-|||||||-|||||||-||||||
GCCACGCCCACTCTAACGCCCACAAACCGCCCAAAACTGCCACGCCCACACTTTTGAAAAAATTTTTTGA

TATTTTTTCATTTTTGTATTAGTCTTGTAAATTTCTATCGATTTGCCAAACAACTTTTTGCCACGCCCAC
|||||||-|||-|||-||||||||||||||||||||||||||||||||||-|||||||||||||||||||
TATTTTT-CATATTTTTATTAGTCTTGTAAATTTCTATCGATTTGCCAAAAAACTTTTTGCCACGCCCAC

TCTAACGCCCATAAACCCACA-AAAACTGTCA
||||||||||-||||-||-|--||||||||||
TCTAACGCCC-TAAAGCCGCCCAAAACTGTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	15	143	DNAREP1_DM	452	594	c	0.93	0.93	964

TTATACCCGTTACTCGTGGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGCCAGAAGGAA
|||||||||||||||||-||||||||||||||||||||||||||||||||||||||||||-|||||||||
TTATACCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAA

GAGTTTCCGTCCATATGAAGTATAT--------------ATATTCTCGATCAAGATCAAAAGCCGAGTCG
|-|||||||-||||||-||||||||--------------|||||||-|||||-||||||-||||||||||
GCGTTTCCGACCATATAAAGTATATTTATATATATATATATATTCTTGATCAGGATCAATAGCCGAGTCG

ATC
|||
ATC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	1836	1904	DNAREP1_DM	4	72	c	0.90	0.90	515

TTCGCACTTCCACTAGCTGAGTAACGGGTATCAAATAGTCGGGGAACTCGACTATAGCGTTCTCACTTG
||||||-|--||||||||||||||||||||||--||||||||||||||||||||||||-|||||-||||
TTCGCATTCACACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATTCTCTCTTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	145	245	DNAREP1_DM	161	284	c	0.86	0.86	502

CACACTTTTGAAAAAAGTTTT-GATATTTTTTCATTTTTGTA-----CTTGTAAA---------------
||||||||||||||||-||||-|||||||||-|||-|||-||-----||||||||---------------
CACACTTTTGAAAAAATTTTTTGATATTTTT-CATATTTTTATTAGTCTTGTAAATTTCTATCGATTTGC

---AAAACTTTTTGCCGCGCCCACTCTAACGTCAACAAACCGCCAAAAGCTGTCA
---|||||||||||||-||||||||||||||-|---||-|||||-|||-||||||
CAAAAAACTTTTTGCCACGCCCACTCTAACGCCCTAAAGCCGCCCAAAACTGTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	603	669	DNAREP1_DM	20	86	c	0.79	0.79	350

TGTGAAGACTTTCCTTTTGCATTTCCACTAGGTGAGTAACAG-TATTCGATAGTCGGGGAACTCGACT
|-||||-|-||--|-||-|||||--||||||-||||||||-|-|||--||||||||||||||||||||
TATGAA-ATTTCGCGTTCGCATTCACACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	505	601	DNAREP1_DM	161	278	c	0.79	0.79	323

TTTGAAAAAAGGTTTTG---TTTTT----TTTTCATT---TTTG--AACTTTTA----------AAAAAA
||||||||||--|||||---|||||----||||-|||----|||--||-||-||----------||||||
TTTGAAAAAATTTTTTGATATTTTTCATATTTTTATTAGTCTTGTAAATTTCTATCGATTTGCCAAAAAA

ATTTTTGCCGGGCCCACTTTTAACTTCCCCAA-CCGCCCAAAAGCTGTCA
-||||||||--|||||||-|-|||--||--||-||||||||||-||||||
CTTTTTGCCACGCCCACTCT-AACGCCCTAAAGCCGCCCAAAA-CTGTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	1905	2199	QUASIMODO_I	3159	3459	c	0.73	0.73	874

TTTTTATTCTAGTTTTATGGAAATACTTTATGG-----ACATCGTCAAAATTGTCTTTTATTAAGTCGAA
||||-|||-|-||||||||-||-||--||-|-|-----||-|--|-|--||-|||||||||-||-||-|-
TTTTAATTTTTGTTTTATGAAAGTATCTTTTAGTTTCTACGTTATTATTATCGTCTTTTATAAATTCTAT

TTGTCTGTTATAATAAGATTAAGAGGTCTTTCGGTTACTGAAATGTGATCTAGGTTGTCTTCCGGTGCAC
-||-|||||-||-|||--||||--||||||||-||||--|||||-|-|--|-||||-|||||--|-||||
CTGCCTGTTGTAGTAA--TTAATTGGTCTTTCCGTTAAGGAAATATAAGATTGGTTATCTTCTTGAGCAC

TATGCACAAAAGCTGCTGTGGG-AAAGAA----CATTGGGGCATCTTCTCCTAGGAAGTTTTCTTGAATT
|-||-|-|--||||--|||-||-||-|||-----|-|||---|--||||||||||||||||||||-||||
TGTGAATAGTAGCTTGTGTTGGTAACGAAATGTTACTGGA--AGTTTCTCCTAGGAAGTTTTCTTCAATT

TGAGCACTAGATATAGCATTAGCGACATGATTATCTTTACCAGGTAGATATTGAATATTATAATCGTATT
|---|-||-||||-|||||--||-|||||-||-|||||||||||-|||||||--||||-|||-||--|||
TTTACTCTCGATAGAGCATCTGCTACATGGTTTTCTTTACCAGGGAGATATTTGATATGATAGTCAAATT

CGTT-AAGTTGTATCTTCCATCTCTG
|-||-||-|||-||-|||||||||||
CATTTAATTTG-ATTTTCCATCTCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	956	990	QUASIMODO_I	3908	3942	c	0.83	0.83	210

AATAAATGTCAATACATGATAAGATTATTTTATTA
|||||||||||||-|||||-|-||---||||||||
AATAAATGTCAATGCATGACAGGAACGTTTTATTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
dya.U11.2.chrU	1000	1381	TV1I	3382	3763	c	0.72	0.72	997

CTGGGGATGTTTCAAGGGTTAATTTTGTGATTCTATGTTCAGTTTA-GAGATCTTAAAGATTTAATATTC
|-||-|-|-||||-|--|||||||||||---|||-|||||-||||--|-|||-||--|--|-|-|-||||
CCGGAGTTATTTCGAAAGTTAATTTTGTATCTCTGTGTTCTGTTTTTGCGATGTTGCAAGTCTCACATTC

GTTTATGATGTTTTGAATAATTTTTTGGTAATTGGGTAATAGTAAAGTTCTTTGAAC----TGA-AGTGA
-|||||-|--||||||-||||-|----------|||-||||||----||||||||||----|||-|||--
ATTTATTAGATTTTGA-TAATCT----------GGGAAATAGTGGGTTTCTTTGAACCAATTGATAGT--

GTTTTTCTATACCAGGGTGTAATATTTCTTTATGTGTTTTGAGAATGATTTCCTTGAACTGGGCATATGT
-||||||-||-||-||-|||||||-||||||-||--||||-|--||-|-|||-|||||-|--||||||||
-TTTTTCAATTCCTGGATGTAATAATTCTTTGTGCTTTTTTAATATTAATTCTTTGAATTCTGCATATGT

TTGAATGTCTATTAGTTTACTACTGGTTTTCATAGTTACTGTCG--------GGACCTATGATTTAAATA
|||||-||||||||-|||--||||-||||||||-|----|||-|--------||||-|||-||||--|--
TTGAAGGTCTATTAATTTTGTACTAGTTTTCATTGCCTTTGTTGAATTATTCGGACTTATTATTTCTAAG

TACGCATTTTGAAAGATTTTTAAAGTCGATTTCTTTAGGGAAGTAAATAACACTTTTCTTAGTGTAAAAT
||-||-|-||||||-|||---|||-||---|||-||--|||||||-|--|||||||||||-|||-|-||-
TAGGCTTCTTGAAAAATTGG-AAAATCTGCTTCGTTGTGGAAGTATAGCACACTTTTCTTTGTGCATAAG

TATTATTTAATTAGATCCTTAGCAAGGGT-TCAGTCATTTCTTTATA
||||-|||-||||--||-||-|||-|-||-|-||||||-|||||-||
TATTCTTTTATTAATTCTTTGGCATGCGTATTAGTCATGTCTTTGTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
fru.U11.3.scaffold_1626	2054	2088	L1C_OC	4232	4266	d	0.86	0.86	209

AATGGGAGGAGGAGGAGGAGATGGGGGTGTTGCAG
||||||||--||||-||||||||||-|-|||||||
AATGGGAGAGGGAGCAGGAGATGGGAGGGTTGCAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	437	521	HATN11_DR	222	321	c	0.78	0.78	296

GCATGTGTGTGTGT---GTGTGTGTGTGTGTGTGTGTGTG-GTGTGTATGTGG--------TTTGTGTGT
||-|||||||-||----|||--|||||||||||--|||-|-|-|-|||||-|---------|||||-|||
GCCTGTGTGTCTGCTTGGTGCTTGTGTGTGTGTTAGTGCGCGCGCGTATGAGAGAGAGAGATTTGTCTGT

GTGTGTGTGTT--GTG-TGTGTGTATGTGT
|||||||||-|--|||-|||||||-|||||
GTGTGTGTGCTTGGTGCTGTGTGTGTGTGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
fru.U11.6.scaffold_1147	1737	1817	HATN11_DR	222	307	d	0.74	0.74	260

ACGCACGCACGCACGCACGCACGCACACACACACACACACA-------CACACACACACACACACACACA
||-|||-|||-||-||||-||-|||||||||||||-|||-|-------|-|-||-||-|-|-|-|||--|
ACACACACACACA-GCAC-CAAGCACACACACACAGACAAATCTCTCTCTCTCATACGCGCGCGCACTAA

CACACACACACACGCCAA
||||||||||--|-||||
CACACACACAAGCACCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.4.chrX	2136	2176	HATN11_DR	218	258	c	0.86	0.86	217

TGTGTGTGTGTGTGTGTGTGTGTG-TGTGTGTGTGTGTTTGT
|||-||||||||||||--||-|||-|||||||||||||||-|
TGTCTGTGTGTGTGTGCTTG-GTGCTGTGTGTGTGTGTTTAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.9.chr13_random	1680	2180	CR1_GG	3036	3536	d	0.93	0.93	3686

ATTCCAGGGTTCTGAAGGAGCTGGCTGAGGTGGTTGCCAAGCCATTCTCCATCATATTTGAGAAGTCATA
||-||||||||||||||||||||||||||||||||||--|||||-||||||||||||||||||||||||-
ATCCCAGGGTTCTGAAGGAGCTGGCTGAGGTGGTTGCTGAGCCACTCTCCATCATATTTGAGAAGTCATG

GCTGTCAGGCAAGGTCCCAGATGACTGGAGGAAGGGTTACATCACTCCCATTTACAAGAAAGGGAGCAAG
||||||||||-|||||||||||||||||||||||||||||-|||||||||||||||||||||||||||||
GCTGTCAGGCGAGGTCCCAGATGACTGGAGGAAGGGTTACGTCACTCCCATTTACAAGAAAGGGAGCAAG

GAGGACCCAGGGAACTACAGGCCAGTGAGTCTCACCTCTGTGCCTGGGAAGATCATGCAACAGATCCTCC
|||||||||||||||||||||||-|||||||||||||||||||||||||||||||||-||||||||||||
GAGGACCCAGGGAACTACAGGCCGGTGAGTCTCACCTCTGTGCCTGGGAAGATCATGGAACAGATCCTCC

TGGATGACATGCTTGATCACATGAGGAATGAGCGTGTGATCCGAGACAGCCAGCACATCTTCACCGGGGG
|||||||||||||-||||||||||||||||||||||||||||||||||||||||||--|||||||-||||
TGGATGACATGCTCGATCACATGAGGAATGAGCGTGTGATCCGAGACAGCCAGCACGGCTTCACCAGGGG

GAGGTCATGCTTAACTAATTTTGTGGCCTTCTATGATGGAGTGACAGCATTGGTGGATGTGGGGAAGGCA
-||||||||||||||-|||-|||||||||||||||||||||||||-||-||||||||||-|||||||||-
AAGGTCATGCTTAACCAATCTTGTGGCCTTCTATGATGGAGTGACGGCGTTGGTGGATGAGGGGAAGGCG

ACCGATGTCATTTACCTGGACTTGACCAAGGCCTTTGACACGGTCCCCCGCCACATCCTTATCTCTTTTA
||||||||||||||||||||||||||||||||||||||||-||||||||-|||||||||||||||-----
ACCGATGTCATTTACCTGGACTTGACCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCCAAAT

TGGAGGGATGTGGATTTGATGGGTGGACCACTCATTCCTTTAGGGATTGGTTGAAAGGCTACAGACAGAG
||||||||||||||||||||||||||||||||||||---|-||--||||||||||||||--|||||||||
TGGAGGGATGTGGATTTGATGGGTGGACCACTCATTGGATAAGAAATTGGTTGAAAGGCCGCAGACAGAG

GGTGGTAATCA
||||||-|-||
GGTGGTGACCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.1.chr23	18	199	CR1_GG	4122	4314	c	0.73	0.73	612

TTCAGTTTAAAGCCATTCCCCTTTGTCCTGTCGTTATCCGCCCACGTCAGA-AGTTGCTCCCCCTCCTGT
||||--|||||-||-||||||-||||||||--||||||--|||---|||-|-||||----|||-||||||
TTCAACTTAAAACCGTTCCCCCTTGTCCTGCTGTTATCTACCC-TTTCAAAGAGTTTACTCCCTTCCTGT

CTGAGACCTCCCTCCAAGCACTGGCAGGATGCAGTGAGCTCTCC-CGGAGCCTTCTCTTCTCCAGGCTGA
-|-----||||||-||-|-||||--|||-||||-||||-||-||-||-||||||||||||||||||||||
TTATAGGCTCCCTTCAGGTACTGAAAGGCTGCAATGAGGTCACCGCGCAGCCTTCTCTTCTCCAGGCTGA

ACA-------CCCCCATAG---GCACACGCAGCAGAGGAGCTCCGGCCCTCTGA
|-|-------|-|||--||---|--|-||-||--||||-|||||-||||-||||
ATAAGCCCAGCTCCCTCAGCCTGTCCTCGTAGGGGAGGTGCTCCAGCCCCCTGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.1.chr23	461	627	MERMITEJ	507	670	c	0.72	0.72	249

CGCTGCCCCTCACAGCTCAGCCTCGGCCCCGCCGGTACCGGC-TGCAGCTCGGCCGGC-CGCACCACGCA
|||-|||-|||||--|---||-|||-|||||||-|--|||||--||-||-|-||||||-|-|-|||-|-|
CGCCGCCGCTCACGAC--GGCGTCGCCCCCGCCCGCGCCGGCACGCCGC-CTGCCGGCTCCCGCCAGGGA

TTCACCCCGCACCGCTCCCGGCCCCTTCGCC----CCGTACCTCCCCATGCCCCGCGG-GCGGACCGAG-
-||----||-|-|||||||--||||-|||||----|||--||--||---|||-||||--|||--|||-|-
GTC----CG-AGCGCTCCCTCCCCCCTCGCCGTCGCCGCGCCGGCCGCCGCCGCGCGCCGCGCCCCGCGC

-GCC-CCGCCGCCGGCTGCCCTCCCGTCGCCGCGCAC
-|||-|||||||||||-|||-----|-||||||||||
CGCCGCCGCCGCCGGCCGCC-----GCCGCCGCGCAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.1.chr23	1591	1671	MER52A	45	123	d	0.74	0.74	180

CAGCTGCAGCGGGGGGGAAACGTACCGTGCTGGGGGTGAGC---CCGGGGAGCCGGCGTGGTGCGGGG--
|-|||||||||||||-|---||------||-||||-||-||---||--||||||-|||-||-||-|||--
CGGCTGCAGCGGGGGAGGCGCG------GCCGGGGCTGCGCGCTCCATGGAGCCAGCG-GGAGCCGGGAA

CGGCGGGGAGCCCCGC
|-|--|||||||||||
CAGGCGGGAGCCCCGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.1.chr23	2106	2179	TREP102_LTR	722	791	d	0.74	0.74	180

CCCCACACG-TCCCTCTGCTCCAGCAC-GTGGGATCCCAGTGCCCTCTGGCCACCTTGCGATGCCCCTGC
||||-|--|-||||-|-||||||||||--|||--||||-|-||-|-|||-||||||-|||-|||----||
CCCCGCGAGCTCCCCCAGCTCCAGCACCATGGCCTCCC-GAGCTCCCTGCCCACCTCGCG-TGC----GC

GCTGCC
||-|||
GCCGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.2.chr4	1162	2200	CR1_F	3963	4963	d	0.67	0.67	3452

CTAGAACTGAACTTGGCCACTAGGGTAAAGGACAACAATTAACATTTCTATCAATACATCGATAGCAAGA
||-|||||-|||-||||--||-|||||||-|--|||||--|||--||-||--|-||-|||-|-||-||||
CTTGAACTCAACCTGGCTGCTGGGGTAAAAGGGAACAAGAAACTCTTTTACAAGTATATCAACAGTAAGA

GGAGGGCTAGGGAGAATCTCCATCTCTTGTTGGATGCCGAGGGGAATTCCACCACANNNNNNNNNNNNNN
|||||-|-|||||||||||||||----|--||||||--|--||||||---|||||---------------
GGAGGACCAGGGAGAATCTCCATTCTCTACTGGATGAGGCTGGGAATGTGACCAC---------------

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
----------------------------------------------------------------------
-------------------TGAGGATAAGGAAAAGGCAGACGTTCTGAATGCCTTCTTTACATCTGTCTT

NNNNNNNNNNNNNNNNNNNNNNNNNNTTACTCCCTGGGCACACAGCTCCTTGAGCTGGTAGATAGGGATG
--------------------------||-||||------------|||--|||-||||-||----||-||
TAAAAGTCAGACCAGTTATCCTCAGGTTTCTCC-----------ACTCTCTGACCTGGCAGCCCTGGCTG

GGGAACAGAATAGGCCATGCATAATACACAATGAGATGGTTTTGAACCTGTTCCGAAAGCTGGACACTCA
||||-||||-||--||---||-|||-|||-|-||-|--||-----|||||-|-|---|-||||||---||
GGGAGCAGACTAAACCTCCCACAATTCACGAGGAAACAGTCAGAGACCTGCTACACCAACTGGACTGCCA

CAAGTCCATGGGGCCAGATGAATTGCACCCTAGAGTGCTGAGGGAGTTGGCAGATG------CCAAACCA
|||||||||||--||||||||--|-|||||-||||||||||||||--|||||||-|------||-|-||-
CAAGTCCATGGAACCAGATGAGATTCACCCGAGAGTGCTGAGGGAACTGGCAGAGGTGATAGCCGAGCCG

GCCTCCATCATTCTTCAGCAGTTGTGGCTAACCAGGGATGTCCTGGTGGACTGGAGACTGTCAAATGTGA
---||||||||---|||||--|--|-|-|-||--|-||-||||--|--||||||||-||--|-|||||||
CTTTCCATCATCTATCAGCGCTCCTTGTTGACGGGTGAGGTCCCAGAAGACTGGAGGCTTGCCAATGTGA

CAGCCATCTTCAAAAAGGGCTGGAAACATGATCCTGGTAGCTACAGACCTATCAGTCTCACCTCGGTGCC
|--||||||-|||-||||||||-|---|-|||||-||-|-||-|||-|||-|-||-||-|||||||||||
CTCCCATCTCCAAGAAGGGCTGCAGGGAGGATCCGGGGAACTCCAGGCCTGTTAGCCTGACCTCGGTGCC

GGGGAATGTTATGGAACGGATAATCTTGGGAGCCATCATA-GACCAGTCTAAGGTCAACCAGGG-ATCAG
||||||--|||||||-|-|||--|||||-|-|--||||---|-|--||--|-||-|||||-|||-|||||
GGGGAAGATTATGGAGCAGATTGTCTTGAGGGAGATCACGTGGCACGTGCA-GGACAACCGGGGGATCAG

GCCCAGTCAGCATGGGTTTATGAACGGTAGATCCTGTTTGACAAACCTGATTTCATTCTATGACCAGGTG
|||-||-|||||||||||-|-|||-||-||-|||||-|||||-||||||||-||-||||||||-|--|||
GCCTAGCCAGCATGGGTTCACGAAGGGCAGGTCCTGCTTGACCAACCTGATCTCCTTCTATGATCCAGTG

ACCTGCTTATTGGATGAAGGCAAGGCTGTTGATGTGGTTTACCTGGACTTCAGTAAAGCCTTTGACCCTG
|||-|--|--|||||||-||-||||||||||||||-||-|||||-||-|||||-|||||||||||--|||
ACCCGTCTGGTGGATGAGGGAAAGGCTGTTGATGTAGTCTACCTAGATTTCAGCAAAGCCTTTGAAACTG

TCCCTTGCAACATTCTTGTGGAGAAGCTGGCCACCCACAGTTTGGATGGCCGTATGCTCT--GCTGGGTG
||-|---||--|||||--||-|-||||||||---||---|-|||||--|---||--||||--|||||||-
TCTCCCACAGTATTCTCCTGCAAAAGCTGGCAGTCCGTGGCTTGGACAG--ATACACTCTTGGCTGGGTA

AAACACTGGCTGGATGGCCAGGCCCAAAGAGCTGTGGTCAATGGAGGTAAATCCAATTGACGCCTGGTCA
|---||||||||||-|||||||||||-||||--|||||-|||||||-||||||||--||--|-|-|||||
AGGAACTGGCTGGAGGGCCAGGCCCAGAGAGTGGTGGTGAATGGAGTTAAATCCAGCTGGGGACCGGTCA

CAAGCGGTGTCCCCCAGGGCTCAGTACTGGGGCTGCTTTTATTTAACATCTTTATTAATGATCTTAACAA
|-||-|||||-||||||-|-||-||-|||||||---|--|-|||||--|||-||||-||||-||--|--|
CGAGTGGTGTTCCCCAGAGGTCGGTGCTGGGGCCTGTCCTGTTTAATGTCTGTATTGATGACCTGGATGA

GGAGATTGAGTGCACCCTCAGTAAGTTTGCAGACGACACCAAGTTGGGAGGGAATTTAGATCTGCCTGA
||--||||||||||||||||-||||||||||||-|||||||||-|-|--||-|-|-|-|||||||||||
GGGCATTGAGTGCACCCTCATTAAGTTTGCAGATGACACCAAGCTAGCTGGAAGTGTTGATCTGCCTGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.3.chr21	374	468	HERV35I	209	302	c	0.67	0.67	277

GAGAGAGAGAGAGAAAGAAAAAAAGAA---TGAATGAAAGAAAAAAAAAAGAAATAGAAGAAAAGAAAAA
||||---|-||--|-|||---||||-|---|||-|||-|||||-||-||-||||-||||--|-|-||-||
GAGAAGTAAAGGAAGAGAGGGAAAGCACCCTGAGTGACAGAAAGAAGAAGGAAAGAGAAAGAGACAACAA

ATAAAGAACGAACAAGAGGAGAAAGGAA
|||--|---|-|||-||||-||--||||
ATAGGGG--GGACAGGAGGGGA--GGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.3.chr21	2114	2196	CR1_B	3759	3845	d	0.68	0.68	286

AGGAAGGGGATGA-CTCCTTAGTAGGGTCTGTTGTGATAGGAAAAGGGGAAATGGTT---AACTAAAAGA
||||||||--|-|-|||-||---|||||---|------||||-||||||-||-||||---|--|-|||||
AGGAAGGGAGTAAACTCTTTGAAAGGGTAGATAACAGCAGGACAAGGGGGAACGGTTTTAAGTTGAAAGA

GGGGAGATTTAGACTGG
|||-||||||||--|||
GGGAAGATTTAGGTTGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.4.chr11_random	2	69	LTR27	2	82	c	0.79	0.79	212

GCTGTTTTTAGCCCCAGCAGCGTGAGGTTTTCCAGA----TGCCCCTGCCT-----------GGCT-CCT
|||||-||--|||---|-||-|||||||||--|||-----|||||||||||-----------||||-|||
GCTGTCTTCGGCCT--GGAG-GTGAGGTTTCACAGGGACCTGCCCCTGCCTACCTAGGCATTGGCTGCCT

CCTGTTGTTCTCAC
||||-||-||||||
CCTGCTGCTCTCAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.4.chr11_random	951	1015	RETROSAT2_I	2553	2623	c	0.71	0.71	203

GGCGTGGCGCTGCACTGCGGTCTGGCTGCCT------GTGGTCTGGGCGGCTGCCAGGGCTCTCAGGGAA
|||||||-|||||||-|||||--|||||-||------|||||---|||-||--|--|-||-||---||||
GGCGTGGAGCTGCACCGCGGTTGGGCTGACTTCCATGGTGGTTCTGGCTGCCACTGGAGCCCTGGTGGAA

G
|
G

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.9.chr13_random	143	1020	CR1-Y3	330	1202	d	0.89	0.89	5968

ATGATACAAAGCTGGGAGGAGTGGCTGGAACACTTGAAAGCTGTGTCAACAGCTTCAACAGGACCTGGCC
|||||||||||||||||||||||||||--||||--|||-||||||--|-||--|||||||-|||||||-|
ATGATACAAAGCTGGGAGGAGTGGCTGACACACCGGAAGGCTGTGCTACCA--TTCAACAAGACCTGGAC

AGACTGGAGTGCCTGGCAGGGAGGAACCTGATGTGGTTTAACAAGAGCAAGTGTAGAGTCTTGCACCTGG
|||||||||-|---|||||||||||||||||||-||||||||||||||||||||||||||||||||||||
AGACTGGAGAGTTGGGCAGGGAGGAACCTGATGAGGTTTAACAAGAGCAAGTGTAGAGTCTTGCACCTGG

GGAGGAATAACTGCATGCATCAGTACAGGCTGGGAGATGAACTACTGGACAGGAGC-CTGCAGAGAAGGA
|||||||||||-|||||||||||||||||-|-||-|||||-||-|||||-||||||-||||-||||||||
GGAGGAATAACCGCATGCATCAGTACAGGTTAGGGGATGACCTGCTGGAGAGGAGCTCTGCGGAGAAGGA

CCTGGGGGTCCTGG---ACAACAGTTTGGTCATGAGCCAGCGGTGTGCCCTCATGGTCAAGAAGGCCAAT
||||||||||||||---|||||||-||||-|||||||||||-|||||||||--|||-|||||||||||||
CCTGGGGGTCCTGGTGGACAACAGGTTGGCCATGAGCCAGCAGTGTGCCCTTGTGGCCAAGAAGGCCAAT

GGTATCCAGGGGTGCATTAAAAAGAACATGGCCAGCAGGTCGAGGGAGGGAATCCTCCCCCTCTACTCTG
|||||||-|||||||||||||||||-|-|||||||||||||||||||||--|||||||||||||||||||
GGTATCCTGGGGTGCATTAAAAAGAGCGTGGCCAGCAGGTCGAGGGAGGTGATCCTCCCCCTCTACTCTG

CCCTGGTGAGGCCACATTTAGACTACTGTGTCCAGTTCTGGGCTCCTCAGTTCAAAAAAAAAAAACAACA
||||||||||||||||||||||-|||||||||||||||||||||||-||||||||||||-|-|-------
CCCTGGTGAGGCCACATTTAGANTACTGTGTCCAGTTCTGGGCTCCCCAGTTCAAAAAAGACA-------

AATGGGTATCTCCTAGAAGGGATCCAACGGAGGGCCACAAAGATGATTAACAACCTGAAGTGTTTCCCTT
----||-|||||||||||||--||||-||||||||||||||||||||-||---||||-||--|-||||-|
----GGGATCTCCTAGAAGGAGTCCAGCGGAGGGCCACAAAGATGATAAAGGGCCTGGAGCATCTCCCGT

ACGAGGAGAGGCTGAGTAACCTGCATCTGTTCAGCCTGGGGAA-----GATTGAGAGGGGATATGATAAG
|-|||||-|||||||||||||||--||||||||||||||||||-----||-|||||||||||-||||||-
ATGAGGAAAGGCTGAGTAACCTGGGTCTGTTCAGCCTGGGGAAAAGAAGACTGAGAGGGGATCTGATAAA

CGTTTATCAATATCTAAAGGGAGGTGGGAGGCAAATGGATGAGGCCAGGCTCTTCTTGGTGATGTGTAGC
-||||||-||||||||||||||||||||||||||||||||||||||||||||||||-||||-||||||||
TGTTTATAAATATCTAAAGGGAGGTGGGAGGCAAATGGATGAGGCCAGGCTCTTCTCGGTGGTGTGTAGC

AATAGAACAAGGAGTAATGGCCTAAAACTTGAATATAGAAGGTTCCATACTAACATGAGGAAGGACTTCT
-||||-|||||||||||||||||||||||||||-||||-|-|||||-||||||||||-|||||-||||||
GATAGGACAAGGAGTAATGGCCTAAAACTTGAACATAGGAAGTTCCGTACTAACATGCGGAAGAACTTCT

TTATGGTAAGGGTGACGGTGCACTGGAACAGGATGCCAAGAGAGGTTATGGAGTCTCTTTCTCTGGAGAT
|||-||||||||||||||-|||||||||||||-||||-|||||||||-|||||||||-||||-|||||||
TTACGGTAAGGGTGACGGAGCACTGGAACAGGTTGCCCAGAGAGGTTGTGGAGTCTCCTTCTATGGAGAT

ATTCAAGATTTGGCTGGATGCCAACCTGTGAGACTTACTGAAGGGTTCCTGCTTTAGCAGGGGGGTTGGA
||||||||---|-|||||-|||-|||||||-|||-||-||-|||||-|||||||||||||||||||||||
ATTCAAGACCCGTCTGGACGCCTACCTGTGCGACCTATTGTAGGGTACCTGCTTTAGCAGGGGGGTTGGA

CTTTATGATCTCTTGAGTTCCCTCCCCAACACCTGTGATTCTGTGAT
||--|||||||||||||-|||||-||-|||-||||-|||||||||||
CTCGATGATCTCTTGAGGTCCCTTCC-AACCCCTGCGATTCTGTGAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.4.chr11_random	2031	2200	CR1-Y3	1009	1182	d	0.88	0.88	1163

GAGCGTCTTTAAGGTAAGGGTGACGGGGCACTGGAACAGATTGCTCAGAGAGGTTGTAGAGTCTCCT---
||-|-||||||-||||||||||||||-||||||||||||-||||-||||||||||||-|||||||||---
GAACTTCTTTACGGTAAGGGTGACGGAGCACTGGAACAGGTTGCCCAGAGAGGTTGTGGAGTCTCCTTCT

GTAGAGATATTCAAGACCTGTCTAGATGCCTACCTGTGTGACCTATTGTGGGTAACCTGCTTTAGCAGGG
-|-|||||||||||||||-||||-||-|||||||||||-||||||||||-||--||||||||||||||||
ATGGAGATATTCAAGACCCGTCTGGACGCCTACCTGTGCGACCTATTGTAGGGTACCTGCTTTAGCAGGG

GG-TTGGACTTTACGATCTCTTGAGGTCCCTTCC
||-|||||||--|-||||||||||||||||||||
GGGTTGGACTCGATGATCTCTTGAGGTCCCTTCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.8.chr27_random	1323	1385	SZ-10_I	1122	1187	d	0.72	0.72	219

TGGAGATGCAGATTGAGAACCTGAAGGAGGAGCTG--GCCTACCT-GAAGAAGAACCACGAGGAGG
||||||-|-||||--||||-|-|||||||-|||||--||---|||-|-|--|||||-||||-||-|
TGGAGAAGAAGATGAAGAATCCGAAGGAGAAGCTGCTGCTCGCCTTGCAAGAGAACAACGAAGAAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gga.U11.8.chr27_random	1930	2029	ZMCOPIA1_I	142	234	c	0.73	0.73	201

CGCCTGGAGCAGGAGATCG-----CCACGTACCGCCGGCTGCTGGAGGGCGAGGACGCCCAGTG--CGTG
||||||||-||||-||-||-----||--|--|||-||||||--||||||-||||--|-||-|-|---|||
CGCCTGGA-CAGGGGACCGGTGGTCCG-GCGCCGGCGGCTG--GGAGGGAGAGGGAGGCCGGCGGCTGTG

GGGTTTCATGGGGCGGCACAGTGGGAGGGGAAGGGAG
|-|--------||||||----||||||||--||||||
GAGCC------GGCGGC----TGGGAGGGAGAGGGAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.4.chr14	212	326	ZMCOPIA1_I	139	254	c	0.68	0.68	185

AGAGGCAGATGAGGCTGTGTTCTGC--CTAGACAGGGGGCTTCAGGACCCTGACGACCCTAGGCCAGGTG
|||||||||-||-||---|-||-||--||-||||||||-|--|-|----|-|-||-||---|||--||-|
AGAGGCAGA-GAAGC---GCTCCGCGCCTGGACAGGGGAC--CGGTGGTCCGGCG-CCGGCGGCTGGGAG

AGAGGGCGAGACT--CAGATGTGGA-----CGGCTAGGAGGGTGAAAGGAGCTG
-|||-|-|||-|---|-|-||||||-----|||||-||||||-||--|||||-|
GGAGAGGGAGGCCGGCGGCTGTGGAGCCGGCGGCTGGGAGGGAGAG-GGAGCCG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.7.gnl|ti|299077911	618	654	ATENSPM3	5941	5977	c	0.86	0.86	221

TAGTAATTGACAAATCAAAGACAAAATGATCATAATT
||-||||||||||||-||||--||||||-||||||||
TAATAATTGACAAATAAAAGTTAAAATGGTCATAATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.8.gnl|ti|299077986	336	372	ATENSPM3	5941	5977	c	0.86	0.86	221

TAGTAATTGACAAATCAAAGACAAAATGATCATAATT
||-||||||||||||-||||--||||||-||||||||
TAATAATTGACAAATAAAAGTTAAAATGGTCATAATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gnl|ti|307976921	42	75	ATENSPM3	5941	5974	c	0.88	0.88	212

TAATTGACAAATCAAAGACAAAATGATCATAATT
||||||||||||-||||--||||||-||||||||
TAATTGACAAATAAAAGTTAAAATGGTCATAATT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
gnl|ti|307976921	380	751	piggyBac-N11_SP	4	395	c	0.86	0.86	1962

AGAGGAAGTTGAGTTCTGGGAAGAGGAGAAAAATAATTTGAGAGCGTTATCATTGTTATTAATTATGCAA
||||-|-|||||||||||||||||||-|||||||||||||-|||||||||||||-||||||----|||||
AGAGAAGGTTGAGTTCTGGGAAGAGGTGAAAAATAATTTGTGAGCGTTATCATTCTTATTA----TGCAA

GTGTGGAAGAACATCAGATAAAAAAAAAAGTTCCCTGAATAGCAT--CT-----AATAC-----------
|||||||||||||||||||||-|-|----||||||||||-|||||--||-----|||-|-----------
GTGTGGAAGAACATCAGATAAGACAT---GTTCCCTGAAAAGCATGGCTCTTCAAATGCCTTTATATTCT

-----TGTCCTATAACAGCACAAAA-TCAGGACGGAATG------------TTATGCCACGTGTTCGTGT
-----||||-|-||||--|--||||-||-||--||---|------------|||-|||||||||||||||
AAATATGTCATGTAAC-TCGTAAAACTCGGGGGGGGGGGGGGGTAGGTTTTTTACGCCACGTGTTCGTGT

AGTCCCATATACATATTTCTGTGTACAGTGCTTGTAACTCATAACTGCAAGACTGGGCCACATTTCTTAT
||||||||||||||-|||||||||||||||-||||||||--|-||--|||||||-|||||-|||||||||
AGTCCCATATACATCTTTCTGTGTACAGTGTTTGTAACT--TTAC--CAAGACTTGGCCAAATTTCTTAT

CATTTTGATAATTCCAGAACCTTGCAGTACACACCATTACTGTCTTAT-TGCGAGATGATCAACCTTTTC
|||||||||-||||||||||||||||-|||||||-|-|----||||||-|||-|||||||||||||||||
CATTTTGATGATTCCAGAACCTTGCAATACACACAAAT----TCTTATATGCTAGATGATCAACCTTTTC

TGATCGATTCCACAACGTTCCTTTCACAATGCAATCACATGACCATAACTCATCCTTCA
||-||||||-||||-||||-||||||||||||||||-||||||||-||||||--|||||
TGGTCGATTTCACACCGTTTCTTTCACAATGCAATCGCATGACCAGAACTCA-ACTTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.5.gnl|ti|257943862	658	1029	piggyBac-N11_SP	4	395	c	0.86	0.86	1962

AGAGGAAGTTGAGTTCTGGGAAGAGGAGAAAAATAATTTGAGAGCGTTATCATTGTTATTAATTATGCAA
||||-|-|||||||||||||||||||-|||||||||||||-|||||||||||||-||||||----|||||
AGAGAAGGTTGAGTTCTGGGAAGAGGTGAAAAATAATTTGTGAGCGTTATCATTCTTATTA----TGCAA

GTGTGGAAGAACATCAGATAAAAAAAAAAGTTCCCTGAATAGCAT--CT-----AATAC-----------
|||||||||||||||||||||-|-|----||||||||||-|||||--||-----|||-|-----------
GTGTGGAAGAACATCAGATAAGACAT---GTTCCCTGAAAAGCATGGCTCTTCAAATGCCTTTATATTCT

-----TGTCCTATAACAGCACAAAA-TCAGGACGGAATG------------TTATGCCACGTGTTCGTGT
-----||||-|-||||--|--||||-||-||--||---|------------|||-|||||||||||||||
AAATATGTCATGTAAC-TCGTAAAACTCGGGGGGGGGGGGGGGTAGGTTTTTTACGCCACGTGTTCGTGT

AGTCCCATATACATATTTCTGTGTACAGTGCTTGTAACTCATAACTGCAAGACTGGGCCACATTTCTTAT
||||||||||||||-|||||||||||||||-||||||||--|-||--|||||||-|||||-|||||||||
AGTCCCATATACATCTTTCTGTGTACAGTGTTTGTAACT--TTAC--CAAGACTTGGCCAAATTTCTTAT

CATTTTGATAATTCCAGAACCTTGCAGTACACACCATTACTGTCTTAT-TGCGAGATGATCAACCTTTTC
|||||||||-||||||||||||||||-|||||||-|-|----||||||-|||-|||||||||||||||||
CATTTTGATGATTCCAGAACCTTGCAATACACACAAAT----TCTTATATGCTAGATGATCAACCTTTTC

TGATCGATTCCACAACGTTCCTTTCACAATGCAATCACATGACCATAACTCATCCTTCA
||-||||||-||||-||||-||||||||||||||||-||||||||-||||||--|||||
TGGTCGATTTCACACCGTTTCTTTCACAATGCAATCGCATGACCAGAACTCA-ACTTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.8.gnl|ti|299077986	677	1038	piggyBac-N11_SP	13	395	c	0.86	0.86	1922

AGAGGAAGTTGAGTTCTGGGAAGAGGAGAAAAATAATTTGAGAGCGTTATCATTGTTATTAATTATGCAA
||||-|-|||||||||||||||||||-|||||||||||||-|||||||||||||-||||||----|||||
AGAGAAGGTTGAGTTCTGGGAAGAGGTGAAAAATAATTTGTGAGCGTTATCATTCTTATTA----TGCAA

GTGTGGAAGAACATCAGATAAAAAAAAAAGTTCCCTGAATAGCAT--CT-----AATAC-----------
|||||||||||||||||||||-|-|----||||||||||-|||||--||-----|||-|-----------
GTGTGGAAGAACATCAGATAAGACAT---GTTCCCTGAAAAGCATGGCTCTTCAAATGCCTTTATATTCT

-----TGTCCTATAACAGCACAAAA-TCAGGACGGAATG------------TTATGCCACGTGTTCGTGT
-----||||-|-||||--|--||||-||-||--||---|------------|||-|||||||||||||||
AAATATGTCATGTAAC-TCGTAAAACTCGGGGGGGGGGGGGGGTAGGTTTTTTACGCCACGTGTTCGTGT

AGTCCCATATACATATTTCTGTGTACAGTGCTTGTAACTCATAACTGCAAGACTGGGCCACATTTCTTAT
||||||||||||||-|||||||||||||||-||||||||--|-||--|||||||-|||||-|||||||||
AGTCCCATATACATCTTTCTGTGTACAGTGTTTGTAACT--TTAC--CAAGACTTGGCCAAATTTCTTAT

CATTTTGATAATTCCAGAACCTTGCAGTACACACCATTACTGTCTTAT-TGCGAGATGATCAACCTTTTC
|||||||||-||||||||||||||||-|||||||-|-|----||||||-|||-|||||||||||||||||
CATTTTGATGATTCCAGAACCTTGCAATACACACAAAT----TCTTATATGCTAGATGATCAACCTTTTC

TGATCGATTACACAACGTTCCTTTCACAATGCAATCACATGACCATAAC
||-||||||-||||-||||-||||||||||||||||-||||||||-|||
TGGTCGATTTCACACCGTTTCTTTCACAATGCAATCGCATGACCAGAAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.7.gnl|ti|299077911	959	1073	piggyBac-N11_SP	288	395	c	0.88	0.88	673

AGAGGAAGTTGAGTTCTGGGAAGAGGAGAAAAATAATTTGAGAGCGTTATCATTGGTATTANTTATGCAA
||||-|-|||||||||||||||||||-|||||||||||||-|||||||||||||--|||||----|||||
AGAGAAGGTTGAGTTCTGGGAAGAGGTGAAAAATAATTTGTGAGCGTTATCATTCTTATTA----TGCAA

GTGTGGGAGAACATCAGATNAAAAAAAAAGTTCCCTGAATAGCAT
||||||-||||||||||||---||-|-|-||||||||||-|||||
GTGTGGAAGAACATCAGAT---AAGACATGTTCCCTGAAAAGCAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.1.chr1	110	391	AluY	1	282	d	0.95	0.95	2165

GGCTGGGCACGATGGCTCACGCCTATAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACAAAGTC
|||-||||-||-||||||||||||-|||||||||||||-|||||||||||||||||||||||||-|-|||
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTC

AGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGG
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||-||
AGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG

GCATGGTGGCGGGGGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGA
||-||||||||||-|||||||||||||||||||-||||||||||||||||||||||||||||||||-|||
GCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA

GGTGGAGCTTGCGGTGAGCCGAGATCGCGCCACTGCACTGCAGCCTGGGCGACAGAGCGAGACTCCGTCT
||-|||||||||-||||||||||||||||||||||||||-||||||||||||||||||||||||||||||
GGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT

CA
||
CA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	2	275	AluY	10	282	d	0.94	0.94	2043

CGGTGGCTCACGCCTATAATCCCAGCACTCTGGGAGGCTGAGGCGGGCGGATCACAAAGTCAGGAGATCG
|||||||||||||||-|||||||||||||-||||||||-||||||||||||||||-|-||||||||||||
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCG

AGACCATCCTGGCTAACATGGTGAAACCCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTG
||||||||||||||||||-|||||||||||-|||||||||||||||||||||||||||||||||-|||||
AGACCATCCTGGCTAACACGGTGAAACCCC-GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTG

GCAGGGGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTGGAGC
||-||-|||||||||||-|||||||-||||||||||||||||||||||||||||||||-|||||-|||||
GCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGC

TTGCGGTGAGCCGATATCGCGCCACTGCACTGCAGCCTGGGCGACAGAGCGAGACTCCGTCTCA
||||-|||||||||-||||||||||||||||-||||||||||||||||||||||||||||||||
TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	1177	1457	AluY	1	282	c	0.90	0.90	1935

TGAGACGGAGTCTTGCTCTGTCAAC-AGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACCTCTG
|||||||||||||-||||||||--|-|||||||||||||||||-||||||||-|||||||-|||-|||-|
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCG

CCTCCCGGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTATAGGTGCCTGCCACCAC
|||||||||||||-|--|||||||||||||||||||||--|||||||||||||-|||-|||-||||||||
CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCAC

GCCTGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTC
|||-|||||||||||||||||||||-|||||||||||||||||-||||||||||||||||||||||||||
GCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTC

CTGACCTCCTGATCTGCCTGCATCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAA
||||||||-|||||-|||-||-||-|||||||||||||||||||||||||||||||||||||--||||--
CTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGG

CC
||
CC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	1179	1459	AluY	1	282	c	0.89	0.89	1924

TGAGACGGAGTCTTGCTCTGTCAAC-AGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACCTCTG
|||||||||||||-||||||||--|-|||||||||||||||||-||||||||-|||||||-|||-|||-|
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCG

CCTCCCAGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTATAGGTGCCTGCCACCAC
||||||-||||||-|--|||||||||||||||||||||--|||||||||||||-|||-|||-||||||||
CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCAC

GCCTGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCAATCTC
|||-|||||||||||||||||||||-|||||||||||||||||-||||||||||||||||||||-|||||
GCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTC

CTGACCTCCTGATCTGCCTGCGTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAA
||||||||-|||||-|||-||-||-||||||||||||||||||||||||||||||||||||||-||||--
CTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGG

CC
||
CC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	715	765	OSTE21	307	357	c	0.83	0.83	202

CGCGCAGCCGCTCTTCCCCGCCACTCCCTCGGTGCC-CGCCAG-CACATTCCC
|||||-|||||||-|||||--|||-|||-||||-||-||||||-||||-||||
CGCGCCGCCGCTCCTCCCC--CACGCCCGCGGTCCCACGCCAGACACACTCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.1.chr1	827	877	OSTE21	307	357	c	0.83	0.83	202

CGCGCAGCCGCTCTTCCCCGCCACTCCCTCGGTGCC-CGCCAG-CACATTCCC
|||||-|||||||-|||||--|||-|||-||||-||-||||||-||||-||||
CGCGCCGCCGCTCCTCCCC--CACGCCCGCGGTCCCACGCCAGACACACTCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	1192	1258	Gypsy-20-LTR_DR	118	193	d	0.76	0.76	236

GTAACTGAAAAGAGATT---------CTGTGTGTGTTTTTTTTTTTTTT--TAGAGGCTGCATAGTTATT
||-|||||--|||||||---------|||||||--|||||-||||-|||--|||||--|-|-||-||--|
GTGACTGATGAGAGATTACGCTCCACCTGTGTGGATTTTTCTTTTCTTTGATAGAGATTTCGTAATT--T

TGTATGAA
|||-||||
TGTGTGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	1958	2199	AluJo	1	213	d	0.76	0.76	873

GGCTAGGTGCGGTGGTGGCTCATGCCTGTAATCCCAGCACTTCGGGAGGC-GGGGTGGGAGAATCGCTTC
|||--||-|||||||---||||-|||||||||||||||||||-|||||||-|-||-|||||-||-||||-
GGCCGGGCGCGGTGG---CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATTGCTT-

AAGCCCGGGAGGTCGCAGCTGCAATGACCCATGAGTGGTTCTGTACTCCAGCTTGGGCAACGGAGCAGGA
-|||||-||||-|||----------||||--------------------|||-||||||||--|||--||
GAGCCCAGGAGTTCGA---------GACC--------------------AGCCTGGGCAACATAGCGAGA

CCATGTCTCAAAAAAAAAAAAAAAAG---GCCGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGG
||--|||||-|-||||||-|-||||----||||||||--|||||-|-|-||||||-|||||||---|-||
CCCCGTCTCTACAAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGG

AAGGCAGAGGCGGGCAGATCATTTGAAGTCAGGAGT
-||||-|||||-||--||||--||||---|||||||
GAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	1002	1111	AluJo	157	276	c	0.84	0.84	661

GAGTCTCACTCTGTGGCCCAGGCTAGAGCGCAGTGGTGCAATCATAACTCACTGCAACCTCGACCTACTG
|-|||||-||||||-|||||||||-|||-|||||||-||-||||||-|||||||||-||||||-||-|||
GGGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCATAGCTCACTGCAGCCTCGAACTCCTG

GGCACAAGCAATCCTC-----TCA-----CCAAGTAACTGGGACTGCAGG
|||-|||||-||||||-----|||-----||-||||-||||||||-||||
GGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	1277	1426	AluJo	7	156	d	0.68	0.68	402

GCAAGGTAATTCAGACCTGTA-TCCTAGCACTT-AAGAAGTGGAAGTGGGATAACCCTGCGTGTTCTC--
||--|||---|||--||||||-|||-|||||||---||-|--||-|-||||--|---|||-||--|-|--
GCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGAT--TGCTTGAGCCCAG

GTGTGGGAGGCTAGCTTAAGCAACAAAGCAGGAAGGCCCCACCA--ACAAAAGAATTTAAAAATTATACG
|-||--|||-|-|||-|--||||||-|||--||---||||--|---||||||-|||--||||||||--||
GAGTTCGAGACCAGCCTGGGCAACATAGCGAGA---CCCCGTCTCTACAAAA-AATACAAAAATTAGCCG

TGCGTGGTGGCGCGCG
-|||||||||||||||
GGCGTGGTGGCGCGCG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.1.chr1	5	81	AluJo	1	101	c	0.83	0.83	363

TATGTTGCCCATTGTGGTCTCAAACTCCTGGGCTC------------------------TCAAAATGTTG
|||||||||||---|||||||-|||||||||||||-------------------------||||-||-||
TATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCTCCCGCCTCGGCCTCCCAAAGTGCTG

GGATTACAGGCATGACCCACAGCACCCGTCC
|||||||||||-|||-||||-||-||||-||
GGATTACAGGCGTGAGCCACCGCGCCCGGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.8.chr10	43	98	AluJo	82	137	d	0.80	0.80	246

AGGCTAGCCTGAGCTACAT---GAGACCCTGCCTCAAAAAAAAGGATACAATAAATTAG
||-|-||||||-||-||||---|||||||-|-|||-|-|||||--||||||-|||||||
AGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTACAAAAA--ATACAA-AAATTAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.4.chr14	1936	2027	AluJo	8	127	d	0.68	0.68	225

CACAGGAGCTTATTTCTGTAATTCCAGCAC--------------ACAGGAAGATGGC----------AAG
|-|-|--|||-|---|||||||-|||||||---------------|-|||-|||-||-----------||
CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATTGCTTGAGCCCAGGAG

TTCAAGGCCTGCCTGTGCTATGCAGCAAGATGCTTTCTC----AAAAATA
|||-||-||-|||||-||-|---|||-|||--|--||||----|||||||
TTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTACAAAAAATA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	1502	1687	AluSc	1	189	c	0.89	0.89	1207

CCTGCCTCAGCCCCCCGAATGGCTGGGACTACAGGCGTGCGCCTCCGCGCCCAGCTAATTTTTGCATTTT
||||||||||||-|||||-|-||||||||||||||||-|||||-||-|||||||||||||||||-|||||
CCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCGCGCCACCACGCCCAGCTAATTTTTGTATTTT

TGGTAGAGACGGG--TTCACCATGTTGGCCAGGATGGTCTCCATCTCTTCATCTGGTGATCCGCCCACCT
|-|||||||||||--||||||||||||||||||||||||||-|||||||-|-||-|||||||||||-|||
TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCGCCCGCCT

CGGCCTCTAGGAGTGCTAGGATTACAGGCGTG-GCCATCGCGCCCGGCC
|||||||----||||||-||||||||||||||-||||-|||||||||||
CGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.1.chr1	1788	2071	AluSp	1	284	d	0.92	0.92	2186

GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTCCTAGAGGCCGAGGTGGGCGGATCACCTGAAG
||||||||||-|||||||||||||||||||||||||||----||||||||||-|||||||||||||||-|
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGG

TCGGGATTTCAAGACCAGCCTGACCAACATGGAGAAACCCCTTCTCTAACTAAAAATACAAAA-TTAGCC
||||||-|||-||||||||||||||||||||||||||||||-||||||-||||||||||||||-||||||
TCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTA-CTAAAAATACAAAAATTAGCC

AGGCGTGGTGGAGTATGCCTGTAATCCCAGTTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAG
-||||||||||-|-||||||||||||||||-|||||-||||||||||||||||||||-||||||||||-|
GGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGG

GAGGCGGAGGTTGCAGTGAGCCGAGACCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCG
||||||||||||||-|||||||||||-|||-||||||||||||||||||||||||||||||-||||||||
GAGGCGGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCG

TCTCA
|||||
TCTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	607	889	AluSp	1	284	c	0.89	0.89	2081

TGAGACAGAGTTTTGCTCTTGTCGCCCAGCCTGGAGAGAAATGGTGTGATCTTGGCTCACTGCAACCCCT
||||||-||||||-||||||||-||||||-||||||-|-|||||-|-|||||-|||||||-||||||-|-
TGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCC

GCCTCCTGGATTCAAACAATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGTTTACAGGCATGCGCCACCA
||||||-||-|||||-|-||||||||||||-|||||||||||||||||||-|||||||||||||||||||
GCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCA

CGCCCAACTAATTTT-GTGTTTTTAGTAGAGACAGGGTTTCTCTGTGTTGGTCAGGCTGGTCTCTAACTC
|||||--||||||||-||-||||||||||||||-|||||||||--|||||||||||||||||||-|||||
CGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTC

CCGACCTCAGGTGATCCACCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCC
|||||||||||||||||-|||-|||-|||||||||||||||||||||||||||-|||||||||-||||||
CCGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC

GGCC
||||
GGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	1	162	AluSp	122	284	d	0.88	0.88	1135

AAAATACAAAA-TTAGCCAGATGTGGTGGTGCACACCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGG
|||||||||||-||||||-|--|||||||-|||--|||-|||||||||||||||||||||||||||||||
AAAATACAAAAATTAGCCGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGG

AGAATGGCGTGAACCCAGGAGGCAGAGAGTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGC
|||||-||-|||||||-||||||-|||--|||-|||||||||||||||-|||||||||||||||||||||
AGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGC

AACAAGAGCAAAACAACTTCTCA
|||||||||-||||--|-|||||
AACAAGAGCGAAACTCCGTCTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.2.chr7	1	162	AluSp	122	284	d	0.87	0.87	1112

AAAATACAAAA-TTAGCCAGATGTGGTGGTGCACACCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGG
|||||||||||-||||||-|--|||||||-|||--|||-|||||||||||||||||||||||||||||||
AAAATACAAAAATTAGCCGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGG

AGAATGGCGTGAACCCAGGAGGCATAGAGTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGC
|||||-||-|||||||-||||||--||--|||-|||||||||||||||-|||||||||||||||||||||
AGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGC

AACAAGAGCAAAACAACTTCTCA
|||||||||-||||--|-|||||
AACAAGAGCGAAACTCCGTCTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	16	298	AluSz	1	283	c	0.87	0.87	1972

TGAGACAAGGTCTTGATCTGTTGCCCAGGCTGGAGTGCAGTGGCACTATCTCAGCTCACTGCAGCCTCTG
||||||---||||-|-|||||-||||||||||||||||||||||-|-|||||-||||||||||-||||-|
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCG

CCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCTATTAGCTGGGATTATAGGCATGCGCCACCAT
||||||-|||||||||--||||||||||||||||||||-|-||||||||||||-||||--|||||||||-
CCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCAC

ACCCGGCTGATTTTTGTATTTTTAGTCGAAACAGGGTTTCACCATGTTAGCCAGACTTGTCTCAAACTCC
-|||||||-|||||||||||||||||-||-||-|||||||||||||||-|||||-||-|||||-||||||
GCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC

TGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGGGCTGGGATTACAGGGGTGAGCCCCTCTGCCCA
||||||||||||||||||||-|||-||||||||||||-||||||||||||||-|||||||-|---||||-
TGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG

GCC
|||
GCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	4	286	AluSz	1	283	c	0.86	0.86	1960

TGAGACAAGGTCTTGATCTGTTGCCCAGGCTGGAGTGCAGTGGCACTATCTCAGCTCACTGCAGCCTCTG
||||||---||||-|-|||||-||||||||||||||||||||||-|-|||||-||||||||||-||||-|
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCG

CCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCTATTAGCTGGGATTATAGGCATGTGCCACCAC
||||||-|||||||||--||||||||||||||||||||-|-||||||||||||-||||--|-||||||||
CCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCAC

ACCCGGCTGATTTTTGTATTTTTAGTCAAAACAGGGTTTCACCATGTTAGCCAGACTTGTCTCAAACTCC
-|||||||-|||||||||||||||||--|-||-|||||||||||||||-|||||-||-|||||-||||||
GCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC

TGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGGGCTGGGATTACAGGGGTGAGCCCCTCTGCCCA
||||||||||||||||||||-|||-||||||||||||-||||||||||||||-|||||||-|---||||-
TGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG

GCC
|||
GCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	1484	1759	AluSz	2	282	c	0.85	0.85	1821

GAGACAGAGTCTTGCTCTGTCACC-AGGCTGGAGTGCAGTGGCGTGATTTCGGCTCACTGCA-CCTCCTC
|||||-||||||-||||||||-||-|||||||||||||||||||-|||-|||||||||||||-|||||-|
GAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGC

CTCCTGGGGTCAAGTGATTCTAGTACCTCAGCCTGCCAAGTAGCTGGGACTATAGGTGTCC--CACCACA
||||-|||-|||||-||||||--|-|||||||||-||-|||||||||||-||-|||-|--|--||||||-
CTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACG

CC-AGCTAATTTTTGGATTTTTAATACAGATGAGGTTTCACCATGTTGGCGAGGCTAATCTCAAACTCTT
||--|||||||||||-|||||||-||-|||-|-|||||||||||||||||-|||||--||||-|||||-|
CCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCT

GGCCTCAAGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGG
|-||||||||||||-||||-||||-|||||||||||||||||||||||||||||||||||||-||||-||
GACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGG

C
|
C

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.1.chr1	1878	2156	AluSz	3	283	d	0.86	0.86	1804

CCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTC
|||||-||||||||||||||||||||||||||||||||||||||||||||-|||||||||||||||||||
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGGTC

AGGGGTTGGAGACCAGCCTAGCCAACAGGGTGAAACCCTGTCGCTCTTAAAAATACAAAAATTAGCCAGG
|||-|||-|||||||||||-|||||||-||||||||||-|||-||--||||||||||||||||||||-||
AGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGG

CCGGGTGTCAGGCGTTTGTAATCCCAGTTACTTGGGAGGTTGAGGCAGGAGAATTGTTTGCACC-GCCAG
|--||||-|--|||--|||||||||||-||||-||||||-||||||||||||||-|-|||-|||-|--||
CGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAG

GCGGTG-TTCCTGTGAGCCGAGATAGTGATCCTGCACTCCAGCCTGGGCAACAGAGGGAGATTCTGTCTC
||||-|-||-|-||||||||||||-|-|---||||||||||||||||||-||||||-||||-||-|||||
GCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC

A
|
A

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	1486	1761	AluSz	2	282	c	0.84	0.84	1781

GAGACAGAGTCTTGCTCTGTCACC-AGGCTGGAGTGCAGTGGCGTGATTTCGGCTCACTGCA-CCTCCTC
|||||-||||||-||||||||-||-|||||||||||||||||||-|||-|||||||||||||-|||||-|
GAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGC

CTCCTGGGGTCAAGTGATTCTAGTACCTCAGCCTGCCAAGTAGCTGGGACTATAGGTGTCC--CACCACA
||||-|||-|||||-||||||--|-|||||||||-||-|||||||||||-||-|||-|--|--||||||-
CTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACG

CC-AGCTAATTTTTGTATTTTTAATACAGATGAGGTTTCACCGTGTTGGCGAGGCTAATCTCAAACTCTT
||--|||||||||||||||||||-||-|||-|-|||||||||-|||||||-|||||--||||-|||||-|
CCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCT

GGCCTCAAGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACGTGG
|-||||||||||||-||||-||||-|||||||||||||||||||||||||||-|||||||||-|-|--||
GACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGG

C
|
C

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	1385	1509	AluSz	1	125	d	0.82	0.82	783

GGCGAGGTGCAGGGGCTCACACCTGTAATTCCAACACTTTGGGAGGCTGAGGCAGGAGTATCTCTTGAGG
|||--||-||-|-|||||||-||||||||-|||-|||||||||||||-|||||-||-|-|||-|||||||
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGG

TCAGGAATTCAAGACCAACCTGGTCAACATAGTGAGACCCCATCTCTACGAATAA
||||||-|||-||||||-|||||-||||||-||||-|||||-|||||||-||-||
TCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	1967	2118	MER30	1	143	d	0.87	0.87	964

CAAGGGTGTCTAATCTTTTGGCTTCCCTGGGCCACATGGCAAGAAGGAGAATTGTCTTGGGCCACACATA
||-|||||||-|||||||||||||||||||||||||--|-||||||-|||||||||||||||||||||||
CAGGGGTGTCCAATCTTTTGGCTTCCCTGGGCCACACTGGAAGAAGAAGAATTGTCTTGGGCCACACATA

AAATACACTAATACTAATGGTAACTGATGAGCTGGAAAAAAAAAAAAAGGAAAAAAAATTGCTAAAAAAA
|||||||||||-|||||-|-||-||||||||||--|||||||||||-|---------||--|--|||||-
AAATACACTAACACTAACGATAGCTGATGAGCTWAAAAAAAAAAAAMA---------ATCCCAMAAAAAT

CTCATAATGTTT
||||||||||||
CTCATAATGTTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	288	364	MER30	1	84	c	0.92	0.92	581

GTGTTAGCATATTTTATGT-TGGCCAAAGACAGTTCTTC------CAGTGTGGCCCAGGGAAGCCAAAAG
|||||||--||||||||||-|||||-||||||-||||||------|||||||||||||||||||||||||
GTGTTAGTGTATTTTATGTGTGGCCCAAGACAATTCTTCTTCTTCCAGTGTGGCCCAGGGAAGCCAAAAG

ATTGGACACCCCTG
||||||||||||||
ATTGGACACCCCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	300	376	MER30	1	84	c	0.92	0.92	581

GTGTTAGCATATTTTATGT-TGGCCAAAGACAGTTCTTC------CAGTGTGGCCCAGGGAAGCCAAAAG
|||||||--||||||||||-|||||-||||||-||||||------|||||||||||||||||||||||||
GTGTTAGTGTATTTTATGTGTGGCCCAAGACAATTCTTCTTCTTCCAGTGTGGCCCAGGGAAGCCAAAAG

ATTGGACACCCCTG
||||||||||||||
ATTGGACACCCCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	608	889	AluSx	1	283	c	0.92	0.92	2013

TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCG
|||||||||||||||||||||||||||||||||||||||||||||-||||||||||||||||||-|||||
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCG

CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGTTTACAGGCATGCGCCACCAC
|||||||||||||-||-||||||||||||||||||||||||||||||||-||||||||--||||||||||
CCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCAC

GCCCAACTAATTTT-GTGTTTTTAGTAGAGACAGGGTTTCTCTGTGTTGGTCAGGCTGGTCTCTAACTCC
||||--||||||||-||-||||||||||||||-|||||||-|--||||||-||||||||||||-||||||
GCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC

CGACCTCAGGTGATCCACCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCCG
-|||||||||||||||-|||-|||-|||||||||||||||||||||||||||-|||||||||||||||||
TGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG

GCC
|||
GCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	2119	2200	AluSx	1	82	d	0.85	0.85	517

GGCCAGGCATGGTGGCACATGCCTATAATTACAGCAATTTGGGAGGCCAAGGTGGGCAGATCACCTGAGG
||||-|||--||||||-||-||||-||||--|||||-|||||||||||-|||-||||-||||||||||||
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGG

TCAGGAGTTCGA
||||||||||||
TCAGGAGTTCGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	1196	1384	GOLEM_B	928	1114	c	0.67	0.67	519

AAACCTCCGTAGTAGATCCTGCCCCACCTCAGGGCTATGTGGTAGGATATATGCTGTTTCCACATTATGC
||||||---|-|||-|-|||-|--|||--|--||||||+|||||-----|||--||-|-|-|---||---
AAACCTAGATGGTATAGCCTACTACACACCTAGGCTATRTGGTATAGCCTAT--TGCTCCTAGGCTACAA

GACTGCATGCTATCTTACTGGTTTAAATGGTGTAGGTGACCATAACACAATGGCAAGCATCCTGTGTATA
--|||-|----||-||||||---|-|||--||||||--|---|||||||||||-|||-||--|||||||-
ACCTGTACAGCATGTTACTGTACTGAATACTGTAGGCAATTGTAACACAATGGTAAGTATT-TGTGTATC

CAAGTACAGAAAAGATACAGTAAAAAT-CACTATAAAAGACAAAAAGTGG
-||--|-|||||||-||||||||||||-|--|||||||||-|||||-|||
TAAACATAGAAAAGGTACAGTAAAAATACGGTATAAAAGATAAAAAATGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.2.chr7	1192	1385	GOLEM_B	928	1118	c	0.67	0.67	513

ACACTAAACCTCCGTAGTAGATCCTGCCCCACCTCAGGGCTATCTGGTAGGATATATGCTGTTTCCACAC
||||-||||||---|-|||-|-|||-|--|||--|--||||||-|||||-----|||--||-|-|-|--|
ACAC-AAACCTAGATGGTATAGCCTACTACACACCTAGGCTATRTGGTATAGCCTAT--TGCTCCTAGGC

TATGCGACTGCATGCTATCTTACTGGTTTAAATGATGTAGGTGACCATAACACAATGGCAAGCATCCTGT
||-----|||-|----||-||||||---|-|||--||||||--|---|||||||||||-|||-||--|||
TACAAACCTGTACAGCATGTTACTGTACTGAATACTGTAGGCAATTGTAACACAATGGTAAGTATT-TGT

GTGTACAAGTACAGAAAAGATACAGTAAAAAT-CACTATAAAAGACAAAAAGTGG
||-|--||--|-|||||||-||||||||||||-|--|||||||||-|||||-|||
GTATCTAAACATAGAAAAGGTACAGTAAAAATACGGTATAAAAGATAAAAAATGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.3.chr8	1808	1956	GOLEM_B	929	1082	c	0.68	0.69	389

GGCTGTGTGGTGTGATGCACTGTTTCTAGGTTA------TGT---GATTGGTTTGTTGTATTAAATGTTG
||||-|+||||-|-----|-||-|-|||||-||------|||---|--||--||--||||-|-|||--||
GGCTATRTGGTATAGCCTATTGCTCCTAGGCTACAAACCTGTACAGCATG--TTACTGTACTGAATACTG

TGGGTGATTATAACACAAGGACAAACATTTTGTGTATCTTAAGTATAGAAAACATATGGTAAATATCTCT
|-||--|||-||||||||-|--||--||||-||||||||-||--||||||||--||--|||||-||----
TAGGCAATTGTAACACAATGGTAAGTATTT-GTGTATCT-AAACATAGAAAAGGTACAGTAAAAATACGG

TATTAAAGACAAGAAATG
|||-|||||-||-|||||
TATAAAAGATAAAAAATG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	1810	1933	GOLEM_B	954	1082	c	0.68	0.69	343

GGCTGTGTGGTGTGATGCACTGTTTCTAGGTTA------TGT---GATTGGTTTGTTGTATTAAATGTTG
||||-|+||||-|-----|-||-|-|||||-||------|||---|--||--||--||||-|-|||--||
GGCTATRTGGTATAGCCTATTGCTCCTAGGCTACAAACCTGTACAGCATG--TTACTGTACTGAATACTG

TGGGTGATTATAACACAAGGACAAACATTTTGTGTATCTTAAGTATAGAAAACATATGGTAAA
|-||--|||-||||||||-|--||--||||-||||||||-||--||||||||--||--|||||
TAGGCAATTGTAACACAATGGTAAGTATTT-GTGTATCT-AAACATAGAAAAGGTACAGTAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.2.chr10	1936	2107	AluJb	113	283	d	0.75	0.75	672

TCTCTATTAAAGACA-AGAAATGCGGCTAGGTGCGGTGGTGGCTCATGCCTGTAATCCCAGCACTTCGGG
||||||--|||-|-|-|-||||---||--||-|---|||||||-|--|||||||-|||||||---|||||
TCTCTACAAAAAATACAAAAAT-TAGCCGGGCG---TGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGG

AGGCAG-GGTGGGAGAATCGCTTCAAGCCCGGGAGGTCGCAGCTGCAATGACCCATGA--GTGGCTCTGT
||||-|-||--||||-|||||||--||||||||||||||--||||||-|||-||-|||--|-|-|-|||-
AGGCTGAGGCAGGAGGATCGCTT-GAGCCCGGGAGGTCGAGGCTGCAGTGAGCCGTGATCGCGCCACTGC

ACTCCAGCTTGGGCAACGGAGCAGGACCATGTCTCA
||||||||-|||||-||-||||--||||-|||||||
ACTCCAGCCTGGGCGACAGAGCGAGACCCTGTCTCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	24	88	L2B	287	354	c	0.67	0.67	199

GATACAGTGGTGACAAAGACAAACTAAACCCGTATTCTGGTGCAGTTTGCATTC---TGAGGGGGATA
|||||||||||||--||||||-||--|--||-|---||-|-|-||-|--||-||---||-|||-||-|
GATACAGTGGTGAACAAGACAGACACAGTCCCTGCCCTCGCGGAGCTCACAGTCCAGTGGGGGAGACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	28	92	L2B	287	354	c	0.65	0.65	185

GATACAGTGGTGACAAAGACAAACTAAACCCGTATTCTGATGCAGTTTGCATTC---TGAGGGGGATA
|||||||||||||--||||||-||--|--||-|---||---|-||-|--||-||---||-|||-||-|
GATACAGTGGTGAACAAGACAGACACAGTCCCTGCCCTCGCGGAGCTCACAGTCCAGTGGGGGAGACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	100	364	L2A	2851	3139	c	0.66	0.66	532

TGATAAGTGCTAAGAA-AAGAACAAAGTGATTTGAG--------------TGGGGGAGA---TGTACTTG
||||||||||||-|||-||-||-||||-|---|-||--------------|||||||||---|||-|---
TGATAAGTGCTATGAAGAAAAATAAAGCGGGGTAAGAAAGATGGGCATGATGGGGGAGAGGGTGTGCW--

TACTGTAGACAGAGTAG-CAAGGAAGTCCTTGATAAGCAGGTGACATTCAAGCAGACATCTGAATAATGA
-|-|-||||-||-||-|-||-|||||-|||---|-||-||||||||||--|||-||-|-|||||--|-|-
-ATTTTAGATAGGGTGGTCAGGGAAGGCCTCTCTGAGGAGGTGACATTTGAGCWGAGACCTGAAKGAGGT

GAAG-AGACAG--ATGTGCAAAGGTCTAGG--AAGAGCATCCTAAGCAAAATAAA--GAAGGTAGCCAAG
||+|-||--||--|-|||-|-|--|||-||--||||||-|-|-|-|||-|---||--|-|-||-||-|||
GARGGAGCSAGCCACGTGGATA--TCTGGGGGAAGAGCGTTCCAGGCAGAGGGAACAGCAAGT-GCAAAG

CCCCTGAGATGAAAATGAGTTTGA---GTTCAAGGAACCACA-GAAAGTCAATGTTGTTAGAGTTAATGG
-|||||||-----|--|-|--||----||||-||||||--||-|-|-|-||-|||-|-|-|||---|--|
GCCCTGAGGCAGGAGCGTGCCTGGCGTGTTCGAGGAACAGCAAGGAGGCCAGTGTGGCTGGAGCGGAGTG

AGTGGGGCAGAGAGT
||-|-||--||||||
AGCGAGGGGGAGAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	96	360	L2A	2851	3139	c	0.66	0.66	532

TGATAAGTGCTAAGAA-AAGAACAAAGTGATTTGAG--------------TGGGGGAGA---TGTACTTG
||||||||||||-|||-||-||-||||-|---|-||--------------|||||||||---|||-|---
TGATAAGTGCTATGAAGAAAAATAAAGCGGGGTAAGAAAGATGGGCATGATGGGGGAGAGGGTGTGCW--

TACTGTAGACAGAGTAG-CAAGGAAGTCCTTGATAAGCAGGTGACATTCAAGCAGACATCTGAATAATGA
-|-|-||||-||-||-|-||-|||||-|||---|-||-||||||||||--|||-||-|-|||||--|-|-
-ATTTTAGATAGGGTGGTCAGGGAAGGCCTCTCTGAGGAGGTGACATTTGAGCWGAGACCTGAAKGAGGT

GAAG-AGACAG--ATGTGCAAAGGTCTAGG--AAGAGCATCCTAAGCAAAATAAA--GAAGGTAGCCAAG
||+|-||--||--|-|||-|-|--|||-||--||||||-|-|-|-|||-|---||--|-|-||-||-|||
GARGGAGCSAGCCACGTGGATA--TCTGGGGGAAGAGCGTTCCAGGCAGAGGGAACAGCAAGT-GCAAAG

CCCCTGAGATGAAAATGAGTTTGA---GTTCAAGGAACCACA-GAAAGTCAATGTTGTTAGAGTTAATGG
-|||||||-----|--|-|--||----||||-||||||--||-|-|-|-||-|||-|-|-|||---|--|
GCCCTGAGGCAGGAGCGTGCCTGGCGTGTTCGAGGAACAGCAAGGAGGCCAGTGTGGCTGGAGCGGAGTG

AGTGGGGCAGAGAGT
||-|-||--||||||
AGCGAGGGGGAGAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	1829	1912	L2A	2978	3061	d	0.73	0.74	350

AGAT-TCTACTATGTCTCACTCCTTCTCATCCTCCAGTTCTCAGCTGAAATGCTCTCTCCTCAGAGTAGC
||||-||-||--||-||--||||+||-|-||-|-|||-||||-|||-|||||----||||||||||--||
AGATATCCAC-GTGGCTSGCTCCYTCACCTCMTTCAGGTCTCWGCTCAAATGTCACCTCCTCAGAGAGGC

CTTCTCTGACCACTC
||||-||||||||-|
CTTCCCTGACCACCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mdo.U11.3.scaffold_13440	895	1008	L2A	3172	3292	c	0.70	0.70	334

TATTAGGCATTTACCTTATGCCAAACATTGTGATAAAAGCTGGGGATACA---------AATACAAGTAA
||||--||---|||--|-|||||--||-|||--||---||||||||||||---------||-|||---||
TATTGAGCGCCTACTATGTGCCAGGCACTGTKCTAGGCGCTGGGGATACAGCAGTGAACAAAACAGACAA

GTTTCCTTGCCCTCAAGGAACT-ACATTTTAATGGGGGTAAAACAATACATAAA
--|-|||-|||||||-|||-||-|||||-||-|||-||--|-||||||-|-|||
AGTCCCT-GCCCTCATGGAGCTTACATTCTAGTGGAGG--AGACAATAAACAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	1696	1777	L2A	3226	3309	d	0.75	0.75	318

TCTGCTTC-TTCACTGCTGAATCCCCAGCACCAGGAAAAATGATTGGAAC-CATTAGTTGCTAAATAAGT
||||-||--||||||||||-|||||||||-||--|-|-|-||--|||-||--|-|||--|||-|||||-|
TCTGTTTTGTTCACTGCTGTATCCCCAGCGCCTAGMACAGTGCCTGGCACATAGTAGGCGCTCAATAAAT

ATTTGTTAAATGAA
|||||||-||||||
ATTTGTTGAATGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.2.chr7	1697	1778	L2A	3226	3309	d	0.75	0.75	318

TCTGCTTC-TTCACTGCTGAATCCCCAGCACCAGGAAAAATGATTGGAAC-CATTAGTTGCTAAATAAGT
||||-||--||||||||||-|||||||||-||--|-|-|-||--|||-||--|-|||--|||-|||||-|
TCTGTTTTGTTCACTGCTGTATCCCCAGCGCCTAGMACAGTGCCTGGCACATAGTAGGCGCTCAATAAAT

ATTTGTTAAATGAA
|||||||-||||||
ATTTGTTGAATGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	388	487	L2A	2672	2773	c	0.71	0.71	272

TTTATTCTTATTGCAATGGGAAATCTTTGCAGAGTTTTAAGTAAAAAACACAAAACGTCATATGACTTAT
||||-|||-|-||--|||||||--|--||-||-|||||-||-|-|--|------||-|-||-||||||||
TTTACTCTGAGTGAGATGGGAAGCCACTGGAGGGTTTTGAGCAGAGGA---GTGACATGATCTGACTTAT

ACTTTTAAAA--ATCACTCTG----CTGTATGGAGA
--||||||||--|||||||||----||||-|-||||
G-TTTTAAAAGGATCACTCTGGCTGCTGTGTTGAGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	384	483	L2A	2672	2773	c	0.71	0.71	272

TTTATTCTTATTGCAATGGGAAATCTTTGCAGAGTTTTAAGTAAAAAACACAAAACGTCATATGACTTAT
||||-|||-|-||--|||||||--|--||-||-|||||-||-|-|--|------||-|-||-||||||||
TTTACTCTGAGTGAGATGGGAAGCCACTGGAGGGTTTTGAGCAGAGGA---GTGACATGATCTGACTTAT

ACTTTTAAAA--ATCACTCTG----CTGTATGGAGA
--||||||||--|||||||||----||||-|-||||
G-TTTTAAAAGGATCACTCTGGCTGCTGTGTTGAGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	609	1549	L1PA16	36	909	d	0.89	0.89	5268

CAACAAGCAAAAAACAAATATTCCAATTTAAAAATGGGCAAAGGACATGAACAGATACTTCTCAAAACAA
||||||||||||||||||-|--||-|||-||||-|||||||||||||||||||||-|||||||||||-||
CAACAAGCAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAA

GACAGAAAAATGGCCAACAAACAT--GAAAAAATGCTCATCATCACTAATCATCAGAGAAATGCAAATCA
||||-|-||--|||||||||||||--|||||||||||||-||||||||||||||||||||||||||||||
GACATACAAGCGGCCAACAAACATATGAAAAAATGCTCAACATCACTAATCATCAGAGAAATGCAAATCA

AAACCACAATGAGGTACCATCTCACACCAGTCACAATAACTATTATTAAAAAGTGAAAAAAAATATCAGA
|||||||||||||-|||||||||||||||||||-|||--|||||||||||||||-||||||---|-||||
AAACCACAATGAGATACCATCTCACACCAGTCAGAATGGCTATTATTAAAAAGTCAAAAAA--CAACAGA

TGCTGGCGAGGCTGTGGA---------ATGCTTGTACCCTGCTGGTGGGAATGCAAATTAGTTCAGCCAC
||||||||||||||-|||---------|-||||-|||-|||-|||||||||||-||||||||||||||||
TGCTGGCGAGGCTGCGGAGAAAAGGGAACGCTTATACACTGTTGGTGGGAATGTAAATTAGTTCAGCCAC

TGTGGAATGCAGTTTGGAGATTTCTCAAAGAACTTAAAACAGAACTACCATCTGACCCAGCAATTCCATT
|||||||-|||||||||||||||||||||||||||||||||||||||||||-||||||||||||-|||||
TGTGGAAAGCAGTTTGGAGATTTCTCAAAGAACTTAAAACAGAACTACCATTTGACCCAGCAATCCCATT

ACTGGGTATATACCCAAAGGAATATAAATCATTCTACCAAAATGATACATGCAAAAAAGGGCTTCTGTCG
||||||||||||||||||||||-|||||||||||||||||||-||-|||||||-----------------
ACTGGGTATATACCCAAAGGAAAATAAATCATTCTACCAAAAAGACACATGCA-----------------

TGAGTGGCACACGTAGGGCAACTCGACTGCTCTGCATGCGGAATCGACATCAAAATGATACATGCACACA
---------------------||||---------------------------------------------
---------------------CTCG---------------------------------------------

TATGTTCATCTCAGCACTATTCACAATAGCAAAGGCATAGAATCAACCTAGGTGCCCATCAACAATGGTA
|||||||||--|||||||||||||||||||||||-|||-|||||||||||||||||||||||---||||-
TATGTTCATTGCAGCACTATTCACAATAGCAAAGACATGGAATCAACCTAGGTGCCCATCAA---TGGTG

GACTGGATAAATAAAATGTGGTACATATACATCATAGAATACTACACAGCCATAAAAAAGAGCAATATGA
|||||||||||-|||||||||||||||||||-|||-|||||||||-|||||||||||||||---|-||-|
GACTGGATAAAGAAAATGTGGTACATATACACCATGGAATACTACGCAGCCATAAAAAAGAATGAAATCA

TATCCTTTGCAGGAACATGGATGCATCTAGAGGCCATTGTCCTAAGTGAGTTAATGCAGAAACAGAAAAC
|-||||||||||-||||||||||||-||-|||||||||-|||||||-||-||||-||||-||||||||||
TGTCCTTTGCAGCAACATGGATGCAGCTGGAGGCCATTATCCTAAGCGAATTAACGCAGGAACAGAAAAC

CAAATACTGCATGTTCTCACTTATAAGTAGGAGCTAAACAATGAGTACACATGGGCATAAA-ATTGGAAC
|||||||-||||||||||||||||||||-|||||||||||-||-||||||||||-||||||-||-|||||
CAAATACCGCATGTTCTCACTTATAAGTGGGAGCTAAACATTGGGTACACATGGACATAAAGATGGGAAC

AATAGACACTGGGGACTTCCAAAAGTTGG-GGGAGGG--GTGGACATGGGTTGAAAAACCA----TTGGA
|||||||||||||||||-|-|-|-|--||-|||||||--|-||-||-||||||||||||-|----||||-
AATAGACACTGGGGACTACTAGAGGGGGGAGGGAGGGAGGAGGGCAAGGGTTGAAAAACTACCTATTGGG

TACTATGCTCACTACCTGGGTGACAGGATCATCTATACCTCAGACCTCAACATCACACAATACACT--TG
|||||||||||||||||||||||--|||||||---||||-||-||||||-||||||-|||||-||---||
TACTATGCTCACTACCTGGGTGATGGGATCATTCGTACCCCAAACCTCAGCATCACGCAATATACCCATG

TAACAAACCTGCACATGTACCCTCTGAATCCAAAATGAAAGTTGGGAAAAAA
||||||||||||||||||||||-|||||||-|||||-|||||||--||||||
TAACAAACCTGCACATGTACCCCCTGAATCTAAAATAAAAGTTGAAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	1715	1833	MLT1B	1	118	d	0.89	0.89	788

TGTTATGGGCTAAATTGTGTCCACCCCCAAAACTCTTATGTTGAAGTCCTAACCCCCA-TACCTCAGAAT
|||||||||||-||||||||||--||||||||-||-||||||||||||||||||||||-|||||||||||
TGTTATGGGCTGAATTGTGTCC--CCCCAAAATTCATATGTTGAAGTCCTAACCCCCAGTACCTCAGAAT

GTCACTCTATTTGAAAATAGGTTCTTTAAAGAGTTAATTCAGTTAAAACG
||-|||-||||||-|-|||||-|||||||||||-|||||-||||||||-|
GTGACTGTATTTGGAGATAGGGTCTTTAAAGAGGTAATTAAGTTAAAATG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	1713	1831	MLT1B	1	118	d	0.87	0.87	761

TGTTATGGGCTAAATTGTGTCCACCCCCAAAACTCTTATACTGAAGTCCTAACCCCT-GTACCTCAGAAT
|||||||||||-||||||||||--||||||||-||-|||--|||||||||||||||--||||||||||||
TGTTATGGGCTGAATTGTGTCC--CCCCAAAATTCATATGTTGAAGTCCTAACCCCCAGTACCTCAGAAT

GTCACTCTATTTGAAAATAGGTTCTTTAAAGAGTTAATTCAGTTAAAATG
||-|||-||||||-|-|||||-|||||||||||-|||||-||||||||||
GTGACTGTATTTGGAGATAGGGTCTTTAAAGAGGTAATTAAGTTAAAATG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	1965	2116	MLT1J	170	317	d	0.69	0.70	562

AGAGAATAAGTAGACATGTCGTGTGTGACTTCCAAAAATTCTCCCTAAGGGGAAGG-CACTACACTTTTG
|||---||||-|||--||--|||||--|||||-|--||-|-|||-|||-|-||-||-||-+-|-|||-|-
AGATGGTAAGCAGAAGTGATGTGTGCAACTTCTAGGAAATGTCCTTAAAGAGAGGGGCA-YGCCCTTCTT

TCCTCCTTACTTCCCTCTTCTTGCTGCTTCAAATGCAGATGTAATGACTGAAGCTCTAGCAGCCACCCTG
|-|-||||----||--||||-||||||-|--||||-||||||-|||-|||-||||||||||||||-|-||
TTCCCCTT----CCTCCTTCCTGCTGCCTGGAATGTAGATGTGATGGCTGGAGCTCTAGCAGCCATCTTG

GGGCAAAAGGTAA
|--||--||||-|
GACCATGAGGTGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	1966	2117	MLT1J	170	317	d	0.69	0.69	545

AGAGAATAAGTAGACATGTCGTGTGTGACTTCCAAAAATTCTCCCTAAGGGGAAGG-CACTACACTTTTG
|||---||||-|||--||--|||||--|||||-|--||-|-|||-|||-|-||-||-||-+-|-|||-|-
AGATGGTAAGCAGAAGTGATGTGTGCAACTTCTAGGAAATGTCCTTAAAGAGAGGGGCA-YGCCCTTCTT

TCCTCCTTACTTCCCTCTTCTTGCTGCTTCAAATGCAGATGTAATGACTGAAGCTCTGGCAGCCACCCTG
|-|-||||----||--||||-||||||-|--||||-||||||-|||-|||-||||||-|||||||-|-||
TTCCCCTT----CCTCCTTCCTGCTGCCTGGAATGTAGATGTGATGGCTGGAGCTCTAGCAGCCATCTTG

GGGCAAAAGGTAA
|--||--||||-|
GACCATGAGGTGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.3.chr11	2159	2200	ALU	1	42	d	0.83	0.83	225

GGCGGGGCAAGGTGGCTCAGGCCGATAGTCCCAGCACTTTGG
|||-||||--|||||||||-|||--||-||||||||||||||
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	2160	2200	ALU	1	41	d	0.83	0.83	217

GGCAGGGCAAGGTGGCTCAGGCCGATAGTCCCAGCACTTTG
|||-||||--|||||||||-|||--||-|||||||||||||
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.2.chr7	181	403	CHARLIE5	2375	2612	d	0.78	0.78	1004

GTTTAAAATACATGCTGGATTTTGAAGAGTT-GTATGAGGAAAAGGATATAAATTATCTTGTCAAT--TT
||-|||||||||--|-||||||-|||||-||-|||-||--|||||-||-||||-|||||--|-|||--||
GTGTAAAATACACACCGGATTTCGAAGACTTAGTACGAAAAAAAGAATGTAAAATATCTCATTAATAATT

TTAATATTGATTTCACATTGAAATGACA-TATT--GCATATGTTATACTAAATAAGTTATGTTATTAAAA
||-|||||||||-||--|||||||||-|-||||--|-||||-||----|||||||--|||-|||||||||
TTTATATTGATTACATGTTGAAATGATAATATTTTGGATATATTGGGTTAAATAAAATATATTATTAAAA

TTAATTTC-------TCCTTTT--TTTTTTTAGTGTGGCTACCAGGAAATTCAGAATTACATATGTGACT
||||||||-------||-||||--||||||||-|||||||||-||-|||||-|-|||||||||||||-||
TTAATTTCACCTGTTTCTTTTTACTTTTTTTAATGTGGCTACTAGAAAATTTAAAATTACATATGTGGCT

TGCATTGTGTTTTTATTGAGTAGCGTTG
-|||||-|-|||-|||||---||||-||
CGCATTATATTTCTATTGGACAGCGCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	182	403	CHARLIE5	2375	2612	d	0.78	0.78	983

GTTTAAAGTACATGCTGGATTTTGAAGAGTT-GTATGAGGAAAAGGATATAAATTATCTTGTCAAT--TT
||-||||-||||--|-||||||-|||||-||-|||-||--|||||-||-||||-|||||--|-|||--||
GTGTAAAATACACACCGGATTTCGAAGACTTAGTACGAAAAAAAGAATGTAAAATATCTCATTAATAATT

TTAATATTGATTTCACATTGAAAT---AACATATTGCATATGTTATACTAAATAAGATATGTTATTAAAA
||-|||||||||-||--|||||||---||-||-|||-||||-||----|||||||-||||-|||||||||
TTTATATTGATTACATGTTGAAATGATAATATTTTGGATATATTGGGTTAAATAAAATATATTATTAAAA

TTAATTTC------TCCTTTT----TTTTTTAGTGTAGCTACCAGGAAATTCAGAATTACATATGTGACT
||||||||------|-|||||----|||||||-|||-|||||-||-|||||-|-|||||||||||||-||
TTAATTTCACCTGTTTCTTTTTACTTTTTTTAATGTGGCTACTAGAAAATTTAAAATTACATATGTGGCT

TGCATTGTGTTTTTATTGAGTAGCGTTG
-|||||-|-|||-|||||---||||-||
CGCATTATATTTCTATTGGACAGCGCTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	497	579	MER117	29	117	d	0.68	0.71	232

GTGCCAACCCTGTTCCAT--GTTGCAGCTGCCTGGGGGGATGTGT----GAGGACTGTGAGACCATACCT
|||+||||-|||-||-||--||-|--|||||||||-|-|-|||||-----||||-|-||||-|--+|-||
GTGYCAACTCTGATCGATTGGTAGTGGCTGCCTGGAGTGCTGTGTTGAGAAGGATTCTGAGGCTGYATCT

TGGCTGAGCAGGCAGGAAT
-||||-||--||-|-||-|
GGGCTCAGTGGGAAAGAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.2.chr7	497	579	MER117	29	117	d	0.68	0.71	232

GTGCCAACCCTGTTCCAT--GTTGCAGCTGCCTGGGGGGATGTGT----GAGGACTGTGAGACCATACCT
|||+||||-|||-||-||--||-|--|||||||||-|-|-|||||-----||||-|-||||-|--+|-||
GTGYCAACTCTGATCGATTGGTAGTGGCTGCCTGGAGTGCTGTGTTGAGAAGGATTCTGAGGCTGYATCT

TGGCTGAGCAGGCAGGAAT
-||||-||--||-|-||-|
GGGCTCAGTGGGAAAGAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.4.chr8	1896	1959	HERVS71	1562	1630	c	0.76	0.76	263

TTCTCTCCCTTCCTCGTTTTTTA-ACTTCCTTCC-AAAT---TTTGGTGTCTTTCCGACTCTAAGCCAA
|||||-|-|||||||-|-||-||-||-|-|-|||-||||---||||||||||---||||||-|||-|||
TTCTCCCTCTTCCTCTTCTTCTAGACCTACATCCTAAATATTTTTGGTGTCTCCACGACTCAAAGGCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.2.chr7	1897	1960	HERVS71	1562	1630	c	0.76	0.76	263

TTCTCTCCCTTCCTCGTTTTTTA-ACTTCCTTCC-AAAT---TTTGGTGTCTTTCCGACTCTAAGCCAA
|||||-|-|||||||-|-||-||-||-|-|-|||-||||---||||||||||---||||||-|||-|||
TTCTCCCTCTTCCTCTTCTTCTAGACCTACATCCTAAATATTTTTGGTGTCTCCACGACTCAAAGGCAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.5.chr8	646	1002	L1MB4	5	357	d	0.78	0.78	1791

TATTCACAATATATAAAGAACTTCAACTGAACCACAACAACAACAAAATGAAAAGTCCCAACTAAAAAAT
|||-||-|||||||||||||||-|-||--|||--|||||||||-||||--||-|--|||||-||||||||
TATCCAGAATATATAAAGAACTCCTAC--AACT-CAACAACAAAAAAACAAATAA-CCCAATTAAAAAAT

GGGCAAACTATTTCAATAGACCTTACTCCAAAGAAAATATGCAGATGATCGGGGAGCATATAAAATGATG
|||||||--|-||-|||||||-||-||||||||||-||||-||-|||--|----||||-||-|||-||||
GGGCAAAGGACTTGAATAGACATTTCTCCAAAGAAGATATACAAATGGCCAATAAGCACATGAAAAGATG

CTCAAAATCATTAATCATTAGAGAAATGAAAATCAAATTCACAATGAGATACCACTTTACACTCACTAGG
|||||-||||-||-|||||||-||||||-||||||||--||||||||||||||||-|-||||-|||||||
CTCAACATCACTANTCATTAGGGAAATGCAAATCAAAACCACAATGAGATACCACCTCACACCCACTAGG

ATGGCTAACATCAAAAAACTGGAAGATAACAAGTGTTGGTGAGGATGCAGAGGAATTAGAACCCTTGGGC
|||||||--|||||||||---|||-||||||||||||||-|||||||--|||-||||-|||||||---||
ATGGCTATAATCAAAAAAACAGAAAATAACAAGTGTTGGCGAGGATGTGGAGAAATTGGAACCCTCATGC

ATTGCTGTTAAGAATGTAAAATGGTATTCCTGCTCTGGAAATTGATATGATAGTTCTTTAAAAAATTAAA
|||||||-|--||||||||||||||----|-|||-||||||----|-||-|-||||-|-|||||-|||||
ATTGCTGGTGGGAATGTAAAATGGTGCAGCCGCTGTGGAAAACAGTTTGGTGGTTCCTCAAAAAGTTAAA

TAGAGAA
-|-||||
CATAGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.5.chr8	1146	1426	L1MB3	340	621	d	0.81	0.81	1543

AAAAAATTAAA--CAGCATTGCCGTATGATCTAGTAATTTCTATTCAGGGTATACACCGCAAAGATTTGA
|||||||||||---||-|||-||-|||||||-||-||||-|--|||-|||||||-|||--|||-|-||||
AAAAAATTAAAAATAGAATTACCATATGATCCAGCAATTCCACTTCTGGGTATATACCCAAAAKAATTGA

AAACAGATGACTCAAACAGATATGTGTACACTCATGTTCAGGGCAGTATTATTCACAATTGCCAAAAGGT
||-|||--|||||-|||||||||-|||||||-||||||||--||||-||||||||||||-||||||||||
AAGCAGG-GACTCGAACAGATATTTGTACACCCATGTTCATAGCAGCATTATTCACAATAGCCAAAAGGT

GGAAGCAACTCACATATTTGTTGGCGGATGAATGAATAAGCAAAACATGGTATAAACACACAATGGAATA
|||||||||-||--|-|---|-|-||||||||||-||||-|||||--|||||||-|||-|||||||||||
GGAAGCAACCCAAGTGTCCATCGACGGATGAATGGATAAACAAAATGTGGTATATACATACAATGGAATA

TTATTCATCCCTAAAAAGGAAGGGGATTCTAACACATGCTTCAGCATGGATCGACCTTGAACAAATTATG
|||||||-||-||||||||||||--|||||-|||||||||-||-|||||||--|||||||--|-||||||
TTATTCAGCCTTAAAAAGGAAGGAAATTCTGACACATGCTACAACATGGATGAACCTTGAGGACATTATG

GTA
-||
CTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.5.chr8	1429	1598	LTR48	617	782	c	0.75	0.75	622

GGGGCAAAGAGGATTTTCCTTCCTCTTCCTTCTGAAAGCTTGGTAATTTGAGTCTATAAAACAAACTGAC
|||--||||---|--||||---||-|-||-||||||-|-|||------|||--------||--|||||||
GGGNGAAAGGAAAGCTTCCCCTCTGTCCCCTCTGAAGGTTTG-----CTGA--------AATGAACTGAC

AATAGACAGATTAACAGGAGAAAAGGCATACAAATT-ATTTATGGGCAAATGTACA--GGAACC-T-CAA
||||||||||||||||||||||||||||||||||||-|||-|---|||-|||-|||--|||--|-|-|||
AATAGACAGATTAACAGGAGAAAAGGCATACAAATTTATTAACATGCATATGAACATGGGAGTCATACAA

AATACA----AAACTCAAAGAAGAACCAGATGACTGAGG
|||--|----|-|||||||||||--|||||||--|||-|
AATNTATATGAGACTCAAAGAAGGGCCAGATGGTTGAAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.6.chr17	1772	1864	HERV30I	1865	1966	c	0.72	0.72	253

TTAATCCTT-CAGAGCTTCCAT-TAGTCATCAGAATCATCTTACAAT------AAATCT-TTTTTATTTG
|||||||||-||---|-||-||-||||-|||-|-|||||||-|-|||------||||||---||||||||
TTAATCCTTGCAAGACATCTATATAGTTATCGGGATCATCTGAGAATTTCCCTAAATCTGCCTTTATTTG

TGATAGATTTGAGCATTTGAAGCAGCCA-GTAC
|--||-||-||||--|--||||-||-||-||||
TTTTAAATCTGAGAGTGCGAAG-AGACATGTAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.7.chr14	1113	1509	MSTA	1	428	c	0.84	0.84	2461

TGTATTAGTCCATTCTCACAC-GCTACAAA----TACCTGAGACTGCGTAATTTATAA-GAAAAGAGGTT
|||||||||||-|||||-||--||||-|||----||||||||||||-|||||||||||-|||||||||||
TGTATTAGTCCGTTCTCGCATTGCTATAAAGAAATACCTGAGACTGGGTAATTTATAAAGAAAAGAGGTT

TAATTAGCTCACGGTTCTGCAGGCTGTACAAGAAGCACAGCA---GCTTCTGTTCAGCTTCTGGGAAGGT
|||||-||||||||||||||||||||||||-||||||--|-----||-||||-||-|||||||||-|||-
TAATTGGCTCACGGTTCTGCAGGCTGTACAGGAAGCATGGTGCTGGCATCTGCTCGGCTTCTGGGGAGGC

TTCAGGAACTTTACATTCATGGCAGAAGGCAAAGGAGAAGCAG-CTCTTCTTACATGGCTGGAGCAGGAG
-|||||||--|||||-|||||||-||||||-||||-|-|||||-|-|-||--|||||||--|||||||||
CTCAGGAAACTTACAATCATGGCGGAAGGCGAAGGGGGAGCAGGCACGTC--ACATGGCCAGAGCAGGAG

CAAGACCAAGAGAGGGGAGACGTACTACATGCTTTTAAACAACCGGATCTCATAAGAACTCACTCACTAT
|||||---||-||||||-||-||-|-|||--|||||||||||||-|||||||--||||||||||||||||
CAAGAGAGAGCGAGGGGGGAGGTGCCACACACTTTTAAACAACCAGATCTCACGAGAACTCACTCACTAT

CATGAGAACAGCACCAATGGG---------------------GAAATCCACTCCCATGACCCA--TGCCT
||-|||-||||||||||-|||---------------------|||||||||-|||||||-|||----|||
CACGAGGACAGCACCAAGGGGATGGTGCTAAACCATTCATGAGAAATCCACCCCCATGATCCAATCACCT

CCCAGCAGGCTCCACCTTCAACATTGGGGATTACAATTCAAGATGAAATTTGGGCGGTGACACAGATCCA
||||-|||||-||||||-|||||-|||||||||||||||||-||||-|||||||-||-||||||||||||
CCCACCAGGCCCCACCTCCAACACTGGGGATTACAATTCAACATGAGATTTGGGTGGGGACACAGATCCA

AACCATATCA
||||||||||
AACCATATCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.6.chr15	1114	1513	MSTA	1	428	c	0.82	0.82	2349

TGTATTAGTCCATTCTCACAC-GCTATAAA----TACCTGAGACTGCGTAATTTATAAGAAAAGAAGGTT
|||||||||||-|||||-||--||||||||----||||||||||||-|||||||||||--|||--|||||
TGTATTAGTCCGTTCTCGCATTGCTATAAAGAAATACCTGAGACTGGGTAATTTATAAAGAAAAGAGGTT

TAATCAGCTCATGGTTCTGCAGGCTGTACAAGAAGCACAGCA---GCTTCTGTTCAGCTTCTGGGAAGGT
||||--|||||-||||||||||||||||||-||||||--|-----||-||||-||-|||||||||-|||-
TAATTGGCTCACGGTTCTGCAGGCTGTACAGGAAGCATGGTGCTGGCATCTGCTCGGCTTCTGGGGAGGC

TTCAGGAACTTTACATTCATGGCGGAAGGCAAAGGAGAAGCAG-CTCTTCTTACACGGCTGGAGCAGGAG
-|||||||--|||||-||||||||||||||-||||-|-|||||-|-|-||--|||-|||--|||||||||
CTCAGGAAACTTACAATCATGGCGGAAGGCGAAGGGGGAGCAGGCACGTC--ACATGGCCAGAGCAGGAG

CAAGACCAAGAGAGGGGAGACGTACTACATGCTTTTAAACAACTGGATCTCATAAGAACTCACTCACTAT
|||||---||-||||||-||-||-|-|||--||||||||||||--|||||||--||||||||||||||||
CAAGAGAGAGCGAGGGGGGAGGTGCCACACACTTTTAAACAACCAGATCTCACGAGAACTCACTCACTAT

CATGAGAACAGCACCAATGGG---------------------GAAATCCACTCCCATGACCCA--TGCCT
||-|||-||||||||||-|||---------------------|||||||||-|||||||-|||----|||
CACGAGGACAGCACCAAGGGGATGGTGCTAAACCATTCATGAGAAATCCACCCCCATGATCCAATCACCT

CCCAGCAGGCTCCACCTTCAACATTGGGGATTACAATTCAAGGATGAAATTTTGGGCGGCGACACAGATC
||||-|||||-||||||-|||||-|||||||||||||||||--||||-||||-|||-||-||||||||||
CCCACCAGGCCCCACCTCCAACACTGGGGATTACAATTCAAC-ATGAGATTT-GGGTGGGGACACAGATC

CAAACCATATCA
||||||||||||
CAAACCATATCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.7.chr14	1552	1579	CRE2	187	214	d	0.96	0.96	208

AAATAAATAAATAAATAAATAAATAAGC
|||-||||||||||||||||||||||||
AAAGAAATAAATAAATAAATAAATAAGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.8.chr21	715	1334	MER31I	3330	3894	c	0.75	0.75	1928

TAGGCCAAGGACCAGACCAGTTTTCCCAAGAGGGCTTTGTAAGTAAGCATTGGTTCCATAAAGTCAACCT
||-||||-|-|||||-||--||||-||||||||||||||||||----|||||||||||||||||||||-|
TAAGCCAGGTACCAGGCCGATTTTTCCAAGAGGGCTTTGTAAG----CATTGGTTCCATAAAGTCAACTT

TAGTTCTTTAAAAGCATGTGGTCATATCTGATTAAATGAACATCATTCTTAA-TAGGACATGGCAGGCAG
||||||-|||||---------------||-|||--|||--||||||||--||-||-|||||---||-||-
TAGTTCCTTAAAG--------------CTAATTCTATGCCCATCATTCCCAAATATGACATTCTAGTCAA

GACCTAGGTTACATAACCAATGTTTTCAATTATGCCCTGGCAAGAAGGAAGACAGATTCTTGTTGAAGTT
--|||-|||-|-|||||||-|||||-|||||-||-||||--|--|||||--||||||||||--||||-||
AGCCTTGGTAATATAACCAGTGTTTCCAATTGTGTCCTGTTA-CAAGGAGAACAGATTCTTACTGAACTT

ATGCAAATAAGTATATTGCCAAAAAATATATATGTATTCTGATTGAATAAGCAGATTCAATAAGAATTTT
||||||||||-||||||||||------------------|||---||||||-|-|-|||-|||-|-|||-
ATGCAAATAACTATATTGCCA------------------TGA--AAATAAGAATACTCACTAATAGTTTC

TGAACTCCAGAGGAATCGGGCAGGGAGAATAAGAGGTCATTTACAAGTGATTCATTTCAGCTTACAAAAG
-|||-||--||||-|||-||-||-|||||----|-||-|||-----||--||||-||--|-|-|||||||
CGAATTCTGGAGGGATCAGGTAGAGAGAA----AAGTAATT-----GT--TTCAWTTTTGTTCACAAAAG

CAGAATCTACAACATTATTATGATGTATGGAAAGCTTAAGAGAAAGCAAAAAGGGCTTCCTTATATATAA
-|-|-|-|||-|-|||--|-|-|--|||-||-|||||||-|||||--||||||---||||||--||-|--
TATACTTTACCAAATTGCTGTAAGTTATAGATAGCTTAAAAGAAAAGAAAAAG--TTTCCTTGAATCT--

GGAAAATAAGACATTAAAATAACATCAACAGTATTCCAGACAAAAATTA-------CTAT----CATCCC
||||||-||-||||||||--|||--||-||-|-||-||-|||||||--|-------||||----|||||-
GGAAAACAAAACATTAAAG-AAC--CAGCAATGTTTCAAACAAAAAACATAAAAAACTATAAATCATCC-

TCACCAATTCATTTAATCCTATGTAATTAATTCCTATTCCACTGGATCTTGTGGATCTTGGGTTAGTCGT
|||-|--||-|||-|-|||-|||||||||||||-|-|||---||---||||---||||||||||||--||
TCATCGGTTNATTCAGTCCCATGTAATTAATTCTTGTTC---TG---CTTG---ATCTTGGGTTAGCAGT

CTAATGAACCCATCTGCTTCTCAACAAAAGTTCTGGAAAATTTGACTAAGTCCACGGATATGGTCT-CAA
-|-||||||||-||-|-||||--|---||||-|||||||-|-|-|||-||||||--|--|||||||-|||
TTCATGAACCCGTCAGTTTCTTCATTCAAGT-CTGGAAATTCTTACTCAGTCCAGTGGCATGGTCTGCAA

AGT
|||
AGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.7.chr22	715	1334	MER31I	3330	3894	c	0.74	0.74	1848

TAGGCCAAGGACCAGGCCAGTTTTCCCAAGAGGGCTTTGTAAGTAAGCATTGGTTCCATAAAGTCTACCT
||-||||-|-||||||||--||||-||||||||||||||||||----||||||||||||||||||-||-|
TAAGCCAGGTACCAGGCCGATTTTTCCAAGAGGGCTTTGTAAG----CATTGGTTCCATAAAGTCAACTT

TAGTTCTTTAAAAGCACGTGGTCATATCTGATTAAATGAACATCATTCTTAA-TAGGACATGGCAGGCAG
||||||-|||||---------------||-|||--|||--||||||||--||-||-|||||---||-||-
TAGTTCCTTAAAG--------------CTAATTCTATGCCCATCATTCCCAAATATGACATTCTAGTCAA

GACCTAGGTTACATAACCAATGTTTTCAATTATGCCCTGGCAAGAAGGAAGACAGATTCTTGTTGAAGTT
--|||-|||-|-|||||||-|||||-|||||-||-||||--|--|||||--||||||||||--||||-||
AGCCTTGGTAATATAACCAGTGTTTCCAATTGTGTCCTGTTA-CAAGGAGAACAGATTCTTACTGAACTT

ATGGAAATAAGTATATTGCCAAAAAATATATATGTATTCTGATTTAATAAGCAGATTCAATAAGAATTTT
|||-||||||-||||||||||--|||--------------------|||||-|-|-|||-|||-|-|||-
ATGCAAATAACTATATTGCCATGAAA--------------------ATAAGAATACTCACTAATAGTTTC

TGAACTCCAGAAGAATTAGGCAGGGAGAATAAGAGGTCATTTACAAGTGATTCATTTCAGCTTACAAAAG
-|||-||--||-|-||-|||-||-|||||----|-||-|||-----||--||||-||--|-|-|||||||
CGAATTCTGGAGGGATCAGGTAGAGAGAA----AAGTAATT-----GT--TTCAWTTTTGTTCACAAAAG

CAGAATCTACAACATTATTATGATGTATGAAAAGCTTAAGAGAAAGCAAAAAGGGCTTCCTTATATATAA
-|-|-|-|||-|-|||--|-|-|--|||--|-|||||||-|||||--||||||---||||||--||-|--
TATACTTTACCAAATTGCTGTAAGTTATAGATAGCTTAAAAGAAAAGAAAAAG--TTTCCTTGAATCT--

GGAAAATAAGACATTAAAATAACATCAGCAGTATTCCAGACAAAAATTA-------CTGT----CATCCC
||||||-||-||||||||--|||--|||||-|-||-||-|||||||--|-------||-|----|||||-
GGAAAACAAAACATTAAAG-AAC--CAGCAATGTTTCAAACAAAAAACATAAAAAACTATAAATCATCC-

TCACCAATTCATTTAATTCTATGTAATTAATTCCTATTCCACTGGATCTTGTGGATCTTGGGTTAGTCGT
|||-|--||-|||-|-|-|-|||||||||||||-|-|||---||---||||---||||||||||||--||
TCATCGGTTNATTCAGTCCCATGTAATTAATTCTTGTTC---TG---CTTG---ATCTTGGGTTAGCAGT

CTAATGAACCCATCTGCTTCTCAACAAAAGTTCTGGAAAATTTGACTAAGTCCACGGATATGGTCT-CAA
-|-||||||||-||-|-||||--|---||||-|||||||-|-|-|||-||||||--|--|||||||-|||
TTCATGAACCCGTCAGTTTCTTCATTCAAGT-CTGGAAATTCTTACTCAGTCCAGTGGCATGGTCTGCAA

AGT
|||
AGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.8.chr21	1735	1848	MER31I	3181	3288	c	0.75	0.75	446

CTTCATGAAAGATGAAGCATTTTTGCTTGTAGCTCATTACAA-ATAACTTCAGGGAAGCATCAAAGCAAA
||||-|--|||||||||||-|||--|-|||||||--||--||-||---|||||-||||-||||-||-|||
CTTCTTTGAAGATGAAGCACTTTGCCCTGTAGCTGMTTGTAAGATGCTTTCAGAGAAGAATCAGAGTAAA

ACATGCTAACAAAAATATCTGTAGATGACAAAAAACTTAAAATGG
|||-------||||-|-|||||---||||||||-|||||||||-|
ACA-------AAAACTGTCTGTGAGTGACAAAAGACTTAAAATAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.7.chr22	1730	1843	MER31I	3181	3288	c	0.75	0.75	446

CTTCATGAAAGATGAAGCATTTTTGCTTGTAGCTCATTACAA-ATAACTTCAGGGAAGCATCAAAGCAAA
||||-|--|||||||||||-|||--|-|||||||--||--||-||---|||||-||||-||||-||-|||
CTTCTTTGAAGATGAAGCACTTTGCCCTGTAGCTGMTTGTAAGATGCTTTCAGAGAAGAATCAGAGTAAA

ACATGCTAACAAAAATATCTGTAGATGACAAAAAACTTAAAATGG
|||-------||||-|-|||||---||||||||-|||||||||-|
ACA-------AAAACTGTCTGTGAGTGACAAAAGACTTAAAATAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.8.chr21	1360	1642	AluYf2	1	284	c	0.98	0.98	2274

TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCA
|||||||||||||||||||||||||||||||||||||||||||-|||||||||||||||||||||||||-
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCG

CCTCCAGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGCGTAGCTGGGACTACAGGCGCCCGCCACCAC
|||||-|||||||||||||||||||||||||||||||-||||||||||||||||||||||||||||||||
CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTACAGGCGCCCGCCACCAC

GCCCGGCTAATTTTTT-GTGTTTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATC
||||||||||||||||-|||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCCGGCTAATTTTTTTGTGTTTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATC

TCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||-|||||
TCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC

GGCC
||||
GGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.7.chr22	1356	1637	AluYf2	1	284	c	0.99	0.99	2267

TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACCGCAAGCTCCG
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||-||||||||||
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCG

CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCAC
|||||||||||||||||||||||||||||||||||||||-||||||||||||||||||||||||||||||
CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTACAGGCGCCCGCCACCAC

GCCCGGCTAATTTTTT-GTGTTTTTTAGTAGAGACGGG-TTTCACTGTGTTAGCCAGGATGGTCTCGATC
||||||||||||||||-|||||||||||||||||||||-|||||||||||||||||||||||||||||||
GCCCGGCTAATTTTTTTGTGTTTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATC

TCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC

GGCC
||||
GGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.9.chr5_random	1	269	L1PREC1	2145	2413	d	0.91	0.91	1939

ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGCAAAGG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||--||||
ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGG

AGAAATAAAATCCTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCTTCCCTTACAAGAG
||||||||||||||||-|||||||||||||||||||-||||||||-||||||||||-|-||||-||||||
AGAAATAAAATCCTTTCCAGACAAGCAAATGCTGAGGGATTTTGTTACCACCAGGCCTGCCTTGCAAGAG

ATCCTGAAGGAAGCACTAAATAGGTAAAGGAAAAACCAGTATCAGCCACTGCAAAAACATACCAAATTGT
-|||||||-|||||||||||||-|-||||||||||||-|||-|||||||||||||||||-||||||-|-|
CTCCTGAAAGAAGCACTAAATATGGAAAGGAAAAACCGGTACCAGCCACTGCAAAAACACACCAAAATAT

AAAGACCATCGACACTGTGAAGAAACTGCCTCAACTAATGGGCAAAATAACCAGCTAGC
||||||||--||||||-||||||||||||-|||||||-||-||||||||||||||||||
AAAGACCAATGACACTATGAAGAAACTGCATCAACTAGTGTGCAAAATAACCAGCTAGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.9.chr5_random	278	1988	L1PA7_5	2	1727	d	0.90	0.91	12735

GTGACTGGCAAGATGGCCGAGTAGGAACAGCTCCATTCTGCAGCTCCTAGCAAGATCAATGCAGAAGGCA
|||-||||||||||||||||-||||||||||||---|||||||||||-|||-|||||||-||||||||||
GTGGCTGGCAAGATGGCCGAATAGGAACAGCTCTGGTCTGCAGCTCCCAGCGAGATCAACGCAGAAGGCA

GGCGATTTC--------CAACTGAGGTACCCGGCTTATCTCAGTGGGACTGATTAGACAGTGGGTGCAGT
||-||||||--------||||||||||||||||||-||||||-||||||||-|||||||||||||||||-
GGTGATTTCTBCATTTCCAACTGAGGTACCCGGCTCATCTCATTGGGACTGGTTAGACAGTGGGTGCAGC

TGGTGGAGGGTGAGTGGAAGCAGGGTGGGGCATTGCCTCACCGAGGAAGTGCAAGAAGTTGGGGAACTTC
----||||||-|||--|||||||||||||||-|-||||||||--|||||-|||||--||--|||||||-|
CCACGGAGGGCGAGCAGAAGCAGGGTGGGGCGTCGCCTCACCCGGGAAGCGCAAGGGGTCAGGGAACTCC

CTCCCTTACTCAAAGGAAACCATGAGGGACTGTGCTGTGAGGAACGGTGCACTCTGGCCCAGATACTACA
|||||-||--|||-||||-||-|||||||||||||---||||||||+||||-||-|||||||||||||--
CTCCCCTAGCCAAGGGAAGCCGTGAGGGACTGTGCCACGAGGAACGRTGCATTCCGGCCCAGATACTATG

CTTTTCCCAAGGTCTTTGCAACGCACAAACCAGGAGATTCCCT-GGGTGCCTACGCCACCAGGGCCCAGG
|||||||||-||||||-|||||-||||-|||||||||||||||-||||||||||-||||||||||||-||
CTTTTCCCATGGTCTTCGCAACCCACAGACCAGGAGATTCCCTCGGGTGCCTACACCACCAGGGCCCTGG

GTTTCAAGCACAAAACTTGGCAGGTGTTTGGGCACACACTGAGCTAGCTGTAAGAGTTTTTTTTTT-CAT
|||||||||||||||||-|||||--|||||||||-||||-||||||||||-|-|||||||||||||-|-|
GTTTCAAGCACAAAACTGGGCAGCCGTTTGGGCAGACACCGAGCTAGCTGCAGGAGTTTTTTTTTTTCGT

ACCCCAGTGGTACCTGGAATGCCAGTGAGACAGAACCATTCACTCTCCTGGAAAGGGGGCTGAAGCCAGG
||||||||||--|||||||-||||||||||||||||--|||||||-||||||||||||||||||||||||
ACCCCAGTGGCGCCTGGAACGCCAGTGAGACAGAACTGTTCACTCCCCTGGAAAGGGGGCTGAAGCCAGG

GAGCCAAGTGGTCTAGCTCAGTGGATCCCACGCCCATGGAGCCCAGCAAGCTAAGACCCACTGGCTTGAA
|||||||||||||||||||||||||||||||-||||-|||||||||||||||||||-|||||||||||||
GAGCCAAGTGGTCTAGCTCAGTGGATCCCACCCCCACGGAGCCCAGCAAGCTAAGATCCACTGGCTTGAA

ATTCTCGCTGCCAGCACAGCAGTCTGAAGTTGACCTGGGATGATAGAGCTTGGTTGGGGGAGAGTTGTCT
||||||||||||||||||||||||||||||-|||||||||||-|-|||||||||-|||||||-|---||-
ATTCTCGCTGCCAGCACAGCAGTCTGAAGTCGACCTGGGATGCTCGAGCTTGGTGGGGGGAGGGGCATCC

GCCATTACTGAGGCTTCAGTAGGCGGTTTTCCCTTCA--GTGTAAACAAAGCCACCAGGAAGTTCAAGCT
||||||||||||||||-||||||||||||||||-|||--||||||||||||||||||||||||||-|-||
GCCATTACTGAGGCTTGAGTAGGCGGTTTTCCCCTCACAGTGTAAACAAAGCCACCAGGAAGTTCGAACT

GGGCAAAGCCCACCGCAGCTCAGCAAAGCGGCTGTGGCCCGACTCCCTCTCTAGAGTCCTCGTCTCTGGG
||||--||||||||-||||||-|||||-|||||||-|||-||||-||||||||||-|||||-||||||||
GGGCGGAGCCCACCACAGCTCCGCAAANCGGCTGTAGCCAGACTGCCTCTCTAGATTCCTCCTCTCTGGG

AAGGGGATCTCTGAAAGAAAGGCAGCAGTACCAGTCAGGGACTTATAGATAAAACTCCCATCTCACTGGG
-||||-||||||||||||||||||||||--||||||||||-|||||||||||||||||||||||-|||||
CAGGGCATCTCTGAAAGAAAGGCAGCAGCCCCAGTCAGGGGCTTATAGATAAAACTCCCATCTCCCTGGG

ACAGAGCACCTGGGGGAAGGGGAGGCTGTGGGCACAGCTTCAGCAGACTTAAACAGCCCTGCATGCCAGC
||||||||||||||||||||||-||||||||||-||||||||||||||||||||---|||||-|||||||
ACAGAGCACCTGGGGGAAGGGGCGGCTGTGGGCGCAGCTTCAGCAGACTTAAACGTTCCTGCCTGCCAGC

TCTGAAGAGAGCAGCGGATCTCCCAGCACAGTGTTCGAGTTCTGCTAAGGGACAGACTGCC-CTTCAACT
|||||||||||||||||||||||||||||||||-|||||-|||||||||||||||||||||-|-||||-|
TCTGAAGAGAGCAGCGGATCTCCCAGCACAGTGCTCGAGCTCTGCTAAGGGACAGACTGCCTCCTCAAGT

GGGTGCCTGACCCCTGTGCCTTCTGATTGGGAGACACCTCCCAGCAGGGGTCAACAGACACCTCATACAG
||||-||||||||||||||||-||||-|||||||||||||||||||||+|||-|||||||||||||||||
GGGTCCCTGACCCCTGTGCCTCCTGACTGGGAGACACCTCCCAGCAGGRGTCGACAGACACCTCATACAG

GAGAGCTCTGGCTGGCATATGGCGGGTGCCCCTCTGGGACGAACCTTACAGAGGAAGGAGCAGGCAGCAA
||||||||-|||||||||-|||-||||||||||||||||||||-|||-|||||||||||-||||||||||
GAGAGCTCCGGCTGGCATCTGGTGGGTGCCCCTCTGGGACGAAGCTTCCAGAGGAAGGAACAGGCAGCAA

TCTTTGCTGTTCTGCAGCCTCCACTTGTGATCCCCAGGCAAACAGGGCCTAGAGTGGACCTCCAGCAAAT
||||||||||||||||||||||-||-|||||-+||||||||||||||-||-||||||||||||||||||-
TCTTTGCTGTTCTGCAGCCTCCGCTGGTGATAYCCAGGCAAACAGGGTCTGGAGTGGACCTCCAGCAAAC

TTCAGCAGACCTGCAGCAGAGGAGCCTGACTGTCAGAAGGAAAACTAACAAACAGAAAGGAATAGCATCA
|-||||||||||||||||||||-||||||||||-|||||||||||||||||||-|||||-||||||||||
TCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTAGAAGGAAAACTAACAAACGGAAAGCAATAGCATCA

ACATCAACAAAAAGGACATCCACACAGAA-CCCCATCTGAAGGTCACCAACATCAAAGACTAAAGGTAGA
|||||||||||||||||-|||||||||||-|||||||-||||||||||||||||||||||-|||||||||
ACATCAACAAAAAGGACGTCCACACAGAAACCCCATCCGAAGGTCACCAACATCAAAGACCAAAGGTAGA

TAAATCCACGAACATGAGGAAAAACCAGTGCAAAAAGGCTAAAAATTCCAAAACCCAGAATGCCTCTTCT
||||||||||||-|||||||||||||||||||||||||||-||||||||||||-||||||-|||||||||
TAAATCCACGAAGATGAGGAAAAACCAGTGCAAAAAGGCTGAAAATTCCAAAAACCAGAACGCCTCTTCT

CCTCCAAAGCATCACAACTCCTCGCCAGCAAGGGAACAAAACTGGATGGAGAATGAGTTTGACGAATTGA
|||||||||-||||||||||||||||||||||||||||||||||||-|||||||||||||||||||||||
CCTCCAAAGAATCACAACTCCTCGCCAGCAAGGGAACAAAACTGGACGGAGAATGAGTTTGACGAATTGA

CAGAAGTAGGCTTCAGAAGGTGGGTAATAACAAACTCTTCCAAGCTAAAGGAGCATGTTCTAACCCAATG
|||||||||||||||||||||||||||||||||||||-|||-||||||||||||||||||||||||||||
CAGAAGTAGGCTTCAGAAGGTGGGTAATAACAAACTCCTCCGAGCTAAAGGAGCATGTTCTAACCCAATG

TAAGGAAGCTAAAAACCTTGAAAAAAGGTTAGACGA-TGGCTAACTAGAACAACCAGTTTAGTGAGGAAC
-|||||||||||-||||||||||||||||||||-||-|-|||||||||||-|||||||||||-||-||||
CAAGGAAGCTAAGAACCTTGAAAAAAGGTTAGAGGAATTGCTAACTAGAATAACCAGTTTAGAGAAGAAC

ATAAAGGACCCAATGGAGCTGAAAAACACAGCACGAGAACTTCATGAAGCATACACAAGTCTCAATAGCC
|||||-||||--|||||||||||||||||||||-|||||||||-||||||||||||||||-|||||||||
ATAAATGACCTGATGGAGCTGAAAAACACAGCATGAGAACTTCGTGAAGCATACACAAGTATCAATAGCC

AAATCGATCAAGTGGAAGAAAGGATATCAGAGATTGAAGATCAGCT
-|||||||||||--|||||||||||||||||||||||||||||-||
GAATCGATCAAGCAGAAGAAAGGATATCAGAGATTGAAGATCAACT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
hsa.U11.9.chr5_random	1990	2200	L1HS	1283	1493	d	0.89	0.89	1432

AATGAAATAAAGCATGAAGACCAGATTAGAGAAAAAAGAATGAAAAGAAATGAACAAAGTCTCCAAGAAA
||||||||-||||--||||---||-||||||||||||||||-|||||||||||-|||||-||||||||||
AATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAA

TATGGGACTATGTGGAAAAACCAAACCTACGTTTGATTGGTGTACCTGAAAGTGACAGGGGGAATGGAAC
||||||||||||||-|||-||||||-||||||-||||||||||||||||||||||---||-|||||||||
TATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAAC

CAAGTTGGAAAACACTCTTCAGCATATTATCCAGGAGAACTTCCCCAACCTAGGAAGACAGGCCAACATT
||||||||||||||||||-|||-|||||||||||||||||||||||||-||||-|||-|||||||||-||
CAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTT

C
|
C

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|Contig62_Contig4544:78777-80976	222	327	TART	697	799	c	0.71	0.71	284

TTCCTTCAGTTATTCCAATAATTCCCTTCTCTTCAGCCCAAGGCTTTTGGGCTTCTGTTTTTCTTCGGTT
||||||||-||--|--|-||||||-|||-|||----|-||||---|||---|--||-|||||--|||-||
TTCCTTCAATTTGTTTATTAATTCTCTTTTCT----CTCAAGATCTTTA--CCGCTTTTTTTAGTCGATT

TTTGG--GCTTCT-GTTTAG-TCTGTCCTCTGTCTGTTCT
||--|--||||-|-||||||-|-|||||||-|||-|||||
TTCAGCTGCTTTTAGTTTAGCTTTGTCCTC-GTCCGTTCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|Contig62_Contig4544:78777-80976	847	880	ZAM_I	615	648	d	0.85	0.85	210

ATATCATTATGAATATATGTACATATATATATAT
|-|||||||--||-||-|||||||||||||||||
ACATCATTACTAACATGTGTACATATATATATAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|Contig62_Contig4544:78777-80976	1225	1271	SC-4	1990	2035	c	0.83	0.83	198

TGTGCCCCAGGCG-GCATGGCAGCATGCCACGCGCCTACGACAGCGTG
|||||||-|||||-|||||-||||--||||||||-||-||-|-|||||
TGTGCCCGAGGCGAGCATGCCAGC--GCCACGCGTCTTCGTCGGCGTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|Contig62_Contig4544:78777-80976	1478	1534	ATHATN3	492	552	d	0.75	0.75	202

GAAAAACCTGAACCTGAAA--CCCACACCGAACCGAA--CGAACACCCACATGCACAGCCC
||||||||-|||||-||||--|||---|||||||--|--||||-||||--|-||-|||-||
GAAAAACCCGAACCCGAAATACCCGACCCGAACCCGATCCGAATACCCGAACGCCCAGGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr15:51459567-51461766	328	404	RMER17B	324	416	d	0.77	0.77	300

GCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCC------
||||||-|-||-|||--|||||-|||||--|-|||--||||||||||-|-|-|-|-||||||||------
GCTCTCGC-CTTTCTTACTCTCMTCTCTAGCCCTCCTTCTCTCTCTCCCCTCCCCCCTCTCTCCACGTGG

----------CTCTCTCTCTCTCT
----------||||||||||-|||
CCATGGCCGGCTCTCTCTCTTTCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr15:51459567-51461766	31	152	RMER17B	322	446	d	0.69	0.69	290

AAGCACCCCTCCTTCTCTCCCTCCCTCCT--CCCTCCTTCCCTTGCTTCCTCCCTTGTTCCCTCCCTTTC
||||-|-|--|-||||--|-|||----||--|||||||||-||--||--|||||-|----||-||||-||
AAGCTCTCGCCTTTCTTACTCTCMTCTCTAGCCCTCCTTCTCT--CT--CTCCCCT----CCCCCCTCTC

TTTATCTAGTCAT-------TC-CTATTTTCCTAT-TTCTCTCCTTCCCACCTTCTTTTCTAC
|--|--|-|-|||-------||-||-|-||-|||--||||||||||-|--|||-|-|||||||
TCCACGTGGCCATGGCCGGCTCTCTCTCTTTCTACCTTCTCTCCTTTCTCCCTGCCTTTCTAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.7.gnl|ti|299077911	128	179	RMER17B	403	449	c	0.83	0.83	248

ATGGTAGAAAGAGAGAGAGAGAGAGAGAGAGAGAAGTGAGAAAGAGAGAGAG
||-||||||||--||-||||-||-----||||||||--||||||||||||||
ATTGTAGAAAGGCAGGGAGAAAG-----GAGAGAAGGTAGAAAGAGAGAGAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr15:51459567-51461766	1164	1249	VANDAL17	5909	5999	d	0.72	0.72	255

TCTCTCTCTGTCTCTGCCTCTCTCTGTATCTCTGTCAC--TGTATC-CCTGTGTCTCTGTCTCTGTCTCT
||--||||--|-||-|||-|-|||--||||-|||||||--||---|-|||-|-|-|||-||||-||||||
TCCTTCTCACTTTCAGCCAC-CTCCTTATCACTGTCACCTTGAGCCACCTCTTTGTCTATCTCAGTCTCT

GTCTCT---GTCTCTCTCTCCT
||-|||-----|||||||||||
GTTTCTCCAACCTCTCTCTCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.5.chrX	1227	2006	LX	274	1054	d	0.86	0.87	4979

AAAAGAAAACACATGGTATGTACTCACTGTTAAGTGGATATTAGCCCAAAAGCTCCAAATACTCAAGATA
|||||||-||||||||||||-||||||||-|||||-|||||||||||||||||||--|||||-|||||||
AAAAGAACACACATGGTATGCACTCACTGATAAGTAGATATTAGCCCAAAAGCTCGGAATACCCAAGATA

CAATCCACAGACCACATGAAGCTCAACAA----AAAGATCAAAGTGTGGATGTTTCAGTCCTTCTTAGAA
||||-|||||||||||||||||||||-||----|||||--||||||||||||-|||||||||||||||||
CAATTCACAGACCACATGAAGCTCAAGAAGAAGAAAGACYAAAGTGTGGATGCTTCAGTCCTTCTTAGAA

GCAAGAACAAAATACTCACAGGAGGAAATAAGGAGACAAAGTGTGTAGCAGAGAATGAAGGAAAGGCCAC
|---|||||||||||||||-||||||||||-||||||||||||||-||||||||-||||||||||||||-
GGGGGAACAAAATACTCACGGGAGGAAATACGGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCAT

TCAGAGACTTCGCAACCTGGGGATCCATCCCATATACTGTTACCAAACCCAGACTCTATTGAGGATGGCA
|||||||||-|-|-|||||||||||||||||||||||-|--|||||||||||||-||||||--||||-||
TCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAGCCACCAAACCCAGACACTATTGYKGATGCCA

AGAAGTACTTGCTGACAGTATCCTGGTATAGCTGTCCCCTGGGAAGCTCTGCCAGAGCCTGACATATACA
||||||-|-|||||||||-|-||||-||||||||||-||||-||-|||||||||||||||||||-|||||
AGAAGTGCATGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATACA

GAAGTGTATGCTCACAGCCAACCATTGGACTGAGCATGGGGTTCCCAATAGAGGAGTTAGAGAAAGGACT
||-|-|-||||||-|||||||||||||-||||||||-|||||-||||||-||||||||||||||||||||
GAGGCGGATGCTCGCAGCCAACCATTGAACTGAGCACGGGGTCCCCAATGGAGGAGTTAGAGAAAGGACT

GAAGGAGCTAAAGGGATTTGGAACCCCATAAGAAGAACAACAGTATCAACCAACCAGACTCCCCAGAGCT
|||||||||-|||||-||||-|||||||||-|||||||||||-||||||||||||||||-|-||||||||
GAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGACCCYCCAGAGCT

CCTAGGGATTAAACCA---ACCAAAGAGTACACATGGAGGGACCTATGGCTCCAGCTGCATATGTAGCAG
||-|||||-|||||||---||-||||||||||||||||-|||||+||||||-||||-|||||-|||||||
CCCAGGGACTAAACCACCAACMAAAGAGTACACATGGAKGGACCYATGGCTYCAGCCGCATACGTAGCAG

AGGATGGCCTTGTCAGGCATCAATGGAGGGGGGGGGGAGGAGGAGTCTTTGGTCCTGTGAAGGCTCAATG
|||||||||||||--|||||||||||----------||||||--|-|-||||||||||||||||||-|||
AGGATGGCCTTGTYNGGCATCAATGG----------GAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATG

CCCCA-TGTAGGGGAATTCCACGGTGGGGAGGCTGGAGTG--------GGTGGGTGGCAGAGAACCCTCA
|||||-|||||||||||-|||--|-||-|||||-||||||---------||||||||--|||-|||||||
CCCCAGTGTAGGGGAATGCCA--GCGGRGAGGCGGGAGTGWATGAGTGKGTGGGTGGGGGAGCACCCTCA

TAGAAGCAGGGGGAAGGGAGATGAGGTAGGAGATTTCCAGAGGGGAAACCGGGAAAGGTTAGAACATTTG
|+||+|||||||--|||--||||-|-||||---||+-|-|||||-+||||-|||||||--|-||-|||||
TRGARGCAGGGGRCAGGAGGATGKGATAGGG--TTYTCGGAGGG-RAACCAGGAAAGGRGATAAYATTTG

AAATGTAAGTAAGTAAAATATCCAAT
||||||||-|||--||||||||||||
AAATGTAAATAAAGAAAATATCCAAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr15:51459567-51461766	1592	2200	LX	439	1054	c	0.83	0.84	3752

ATTGGAT----TTTTAATTTACATTTCAAATGTTATCCCTATTCCTGGTTCCCCTCCAGAAACCC----A
|||||||----|-||-|||||||||||||||-|||||-|--|||||||||-||||||--+|||||-----
ATTGGATATTTTCTTTATTTACATTTCAAATRTTATCYCCTTTCCTGGTTYCCCTCCGARAACCCTATCM

CAATCTCT----CCCTGCTTTTTTGAGGGTACTCCCCTACCAACCCACCCACTTCTTCCTACCTCTCCCC
||--|||-----||||||+|-+-|||||||-||||||-|||-||-|||-||-----|||--||||+||-|
CATCCTCCTGYCCCCTGCYTCYATGAGGGTGCTCCCCCACCCACMCACTCATWCACTCCCGCCTCYCCGC

CACCCTGACATTCTCCTACACTAGAGCATTGAGCCTTGGCAGGACTAAGGGCCTCTCCTCCCATTGATGC
-----||-|||||-||||||||-|-||||-|||||||--||||||-||||||||||||||||||||||||
-----TGGCATTCCCCTACACTGGGGCATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGC

CTGACAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATAGTTCCATCCCTGTATAGTCTTGGGATGG
|--||||||||||||||||||||-|||||-||||-||||||+|-|||-|||-|||-||-||||--|-|||
CNRACAAGGCCATCCTCTGCTACGTATGCGGCTGRAGCCATRGGTCCMTCCATGTGTACTCTTTKGTTGG

TGGTTTAGAACCTTGGAGCTCTGAGGGGTCAGGTTGGTTGATATTGTTGTTCTTCTTATGGAATTACAAA
||||||||--|||-|||||||||--|||||-||||||||||||||||||||||||-|||||--||-||||
TGGTTTAGTCCCTGGGAGCTCTGGRGGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTGCAAA

CCACTTCAGCTTCTTCAATCCTTTCCCTAACTCCTCCAGTGGGAATTCTGTTCTCAGTTCAGTGGTTGTC
||-||||||||-|||||-|||||||-||||||||||||-||||-|--|-||-|||||||||-||||||-|
CCCCTTCAGCTCCTTCAGTCCTTTCTCTAACTCCTCCATTGGGGACCCCGTGCTCAGTTCAATGGTTGGC

TGCAAGCACCCACCTCTGTATTTGTCAGGTTCTGGCAAAGCCTCTCAGGAGAAAGCTATATCAGGCTCCT
|||-||||-||-|||||||||||||||||-|||||||-||||||||||||||-|||||||||||||||||
TGCGAGCATCCGCCTCTGTATTTGTCAGGCTCTGGCAGAGCCTCTCAGGAGACAGCTATATCAGGCTCCT

GTTAGCACACCCTTCTTGGCATCCACAATATTGTTTAGGTTTAGTGACTGTATATGGGATGGATCCCCAG
||-||||--|-||||||||||||-+|||||-|||-|-|||||-|||-|||||||||||||||||||||||
GTCAGCATGCACTTCTTGGCATCMRCAATAGTGTCTGGGTTTGGTGGCTGTATATGGGATGGATCCCCAG

GTGAAGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGATCCACACTTTGCCTCCATATTT
|||--||||||||||-||||||||||||||||||||||-|||||||||||-||||-|||||
GTGGGGCAGTCTCTGAATGGCCTTTCCTTCAGTCTCTGCTCCACACTTTGTCTCCGTATTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.9.chrUn_random	1	809	LX	155	1054	d	0.79	0.80	3669

AATGTGGTACATTTACACAATGGATTACTATTCAGCTATTAAAT-CAATGGATTTATGAAATTCTTAAGG
|||||||||-||||||||||||||-|||||--|||||||||||--|||||--||-||||||||||||-||
AATGTGGTAYATTTACACAATGGAGTACTACACAGCTATTAAAAACAATGACTTCATGAAATTCTTA-GG

CAAATGGATGAATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACCAAAGAACCCACATGATATG
||||||||||-|-||-||--|||||||||||||||||||||||||+||||-|||||||-||||||-||||
CAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCARTCACAAAAGAACACACATGGTATG

CAATCACTGATAAGTGGTTATTATCCCAGAAACTCAGAATATCCAAGATACAGTTTGCAAGACACATGAA
||-||||||||||||-|-|||||-||||-||-|||-|||||-||||||||||-||--||---||||||||
CACTCACTGATAAGTAGATATTAGCCCAAAAGCTCGGAATACCCAAGATACAATTCACAGACCACATGAA

ACTCAAGAATAAGGAAGACAAAAGAGTGGATATTTTGAGCCTTCTTAGAAGGGGTAACAAAATACCCATA
-||||||||-|||-|||||-||||-||||||--||----|||||||||||||||-||||||||||-||--
GCTCAAGAAGAAGAAAGACYAAAGTGTGGATGCTTCAGTCCTTCTTAGAAGGGGGAACAAAATACTCACG

GAAGGAGTTACAGAGACAAAGTTTGGAGCTGATACAGAAGGATGGACCATCCAGAGACTGCCCCACCTGG
|-||||--|||-||||||||||-||||||-||-||-||||||--|-||||-|||||||||||||||||||
GGAGGAAATACGGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATTCAGAGACTGCCCCACCTGG

GGATCCATCCCAT-TATCAGCCACCAAAC----ACAT--------ATGCCAGCAATAGTTTGCTGAAAGG
|||||||||||||-||-||||||||||||----|||---------||||||--||--|--||||||-|||
GGATCCATCCCATATA-CAGCCACCAAACCCAGACACTATTGYKGATGCCAAGAAGTGCATGCTGACAGG

ACCCTGATATAGCTGTCTCATGTGAGGCTATGCCAGTGCCTGGAAATTATAGAAGTGAATGCTCACAGTC
|-|||||||||||||||||-||-||||||-||||||-|||||--||-||-|||-|-|-||||||-|||-|
AGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATACAGAGGCGGATGCTCGCAGCC

ATCTATTGGATGGAACACAGGGTCCCCAGGGGAGGTGCTAGAGAAAGTACCCTAGGAGCTGAAGGGGTCT
|-|-||||-|--||-|||-|||||||||--|||||-|-|||||||||-||---|||||||||||||||-|
AACCATTGAACTGAGCACGGGGTCCCCAATGGAGGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGGGTTT

GCAACCCTATAGAAGGACCAACAATATGAACTAACCAATACTCCCAGAGCTC------------------
|||||||-||||-|-||-|||||||||-|||-|||||---|--|||||||||------------------
GCAACCCCATAGGAAGAACAACAATATCAACCAACCAGACCCYCCAGAGCTCCCAGGGACTAAACCACCA

--------------------------ATGTCTCTAGCTGCATATGTAGCAGAAGATGGCTTTGTTGGCCG
--------------------------|||-||--|||-|||||-||||||||-||||||-||||+-|-|-
ACMAAAGAGTACACATGGAKGGACCYATGGCTYCAGCCGCATACGTAGCAGAGGATGGCCTTGTYNGGC-

AATCCACGGGAAGAGTGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTAGAGGGGAACGTCAG----
-|||-|-||||-|||-|||||-||||||-||--||---|--||||||||||--|||||||-|-|||----
-ATCAATGGGAGGAGAGGCCC-TTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAGGGGAATGCCAGCGGR

--GGCCAGGAATTGG--GAGAGGGTGGGTAGGGAAGCA----------------GGACCGGGGGAGGGTA
--|||--||-|-||---|||-|-||||||-|||-||||----------------||+|-||-|||-|--|
GAGGC--GGGAGTGWATGAGTGKGTGGGTGGGGGAGCACCCTCATRGARGCAGGGGRCAGGAGGATGKGA

TAGGGGACTTTT-------------------GGGATAGCATTTTAAACGTAAATGAAGAAAATATCTAAT
|||||---||+|-------------------|-||||--||||-|||-||||||-|||||||||||-|||
TAGGG---TTYTCGGAGGGRAACCAGGAAAGGRGATAAYATTTGAAATGTAAATAAAGAAAATATCCAAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	1905	2087	LX	671	853	d	0.80	0.80	1035

ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGAGTTTGAAACCCCATAGGAGGAACAGCAATATG
|||-|||||-|||||||||-||--|||||||||||||-|||||-||||||||||||-|||||-||||||-
ATGGAGGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACAACAATATC

AAATGGCCAGTACCTCTAGAGCTCCCAGGGAATAAACCACTAAGCAAAGAACACACATGGTGGGACTCAT
||----||||--||+|-||||||||||||||-||||||||-||--|||||--||||||||--||||--||
AACCAACCAGACCCYCCAGAGCTCCCAGGGACTAAACCACCAACMAAAGAGTACACATGGAKGGACCYAT

GACTCCAGCTGCATATGTAGCAGAGGATGACCTAGTCAGTCAT
|-||-||||-|||||-|||||||||||||-|||-||--|-|||
GGCTYCAGCCGCATACGTAGCAGAGGATGGCCTTGTYNGGCAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	1722	1904	LX	854	1054	c	0.83	0.85	949

ATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCTCTTTCCTGGTTTCCCCTCCAAAAGCCCCCTA
|||-|||||||||||||||||||||||||||-|||||--|||||||||||+|||--|-|+||---|||||
ATTGGATATTTTCTTTATTTACATTTCAAATRTTATCYCCTTTCCTGGTTYCCCTCCGARAA---CCCTA

TCCC-TTCTCCCCTCCCCT-------------TGCTCACCAACCCACCCACTC--------CTGCTTCTT
||-|-|-||||--+|||||-------------|||||-||-||||||-|||||--------|-||-||+-
TCMCATCCTCCTGYCCCCTGCYTCYATGAGGGTGCTCCCCCACCCACMCACTCATWCACTCCCGCCTCYC

GACCCTGGCATTTCC-TACACTGGGTCATAGAGCCTTCTCAGGACCAAGGGCCTCTCCTCCCATTG
--|-||||||||-||-|||||||||-|||-||||||||-|||||||||||||||||||||||||||
--CGCTGGCATTCCCCTACACTGGGGCATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.2.chr4	2059	2200	LX	515	656	d	0.80	0.81	744

ATATATATGCTCCAAAACTAGATAAGATCTTTGAAGCCAAAGAGTGCATGATGACTGGAGCCTGATATAG
|||||-|--|-|||||-|-|||-|--||--+-||-|||||--||||||||-||||-||||||||||||||
ATATACAGCCACCAAACCCAGACACTATTGYKGATGCCAAGAAGTGCATGCTGACAGGAGCCTGATATAG

CTGTCTCCTTAGAGCCTCAGCCAGAGCATGACAATCACAGAGGCAGATGCTCACAGCCAACCATTGAATT
|||||||||-||||-|||-||||||||-||||||--||||||||-|||||||-|||||||||||||||-|
CTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATACAGAGGCGGATGCTCGCAGCCAACCATTGAACT

AA
-|
GA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	614	746	B1	2	134	c	0.95	0.95	1034

GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT
||||||||||||||||||-||||||||||||||||||||||||||-||||||||||||||||||||||||
GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTNTGTAGACCAGGCTGGCCTCGAACT

CAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCCAG
||||||||||||||||||||||||||-|||||||||||||||||-|||-|||||||-||||-|
CAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.1.chr4	229	363	B1	1	135	c	0.94	0.94	1024

CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCCAAC
|||||||||||||||||||-||||||||||||||||||||||||||-|||||||||||||||||||-|||
CGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTNTGTAGACCAGGCTGGCCTCGAAC

TCAGAGATCCACCTGCCTCTACCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGC
|||||-||||-|||||||||-||||||-|||||||||||||||||||||||||||||-|||||||
TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	1441	1570	B1	1	134	c	0.95	0.95	999

GAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCGAACT
||||||||||||||||||||||-||||||||||||||||||||||-|||||||||||||-||||||||||
GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTNTGTAGACCAGGCTGGCCTCGAACT

CAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCA----CCACCATGCCCGGC
|||||||||-|||||||||||||||||||||||||||||||||||-----||||||||||||||
CAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.1.chr4	1298	1430	B1	3	135	d	0.87	0.87	829

CGGGCATGGTGGTCCACGCCTTTAATCCCAGAGTTTGGGAGGCAGACGCAGGTGGTTTTCTGAGTTCGAG
||||||||||||--|||||||||||||||||---||||||||||||-|||||-||-||||||||||||||
CGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAG

GCCATCCTGCTCTTCAATGTTAGTTCCAGGACAGCCAGGGTTATACAAAGAAACCCTGTCTCG
||||-||||-|||-||--||-|||||||||||||||||||-||-|||-|||||||||||||||
GCCAGCCTGGTCTACANAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	1487	1621	B1	1	134	c	0.81	0.81	771

GAGACAAGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCAAATT
||||||-|||||||||||-|||-||||||||||||||||-|||||-|||||||||||||||||||-||-|
GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTNTGTAGACCAGGCTGGCCTCGAACT

CAGAGGTCTACCTGCCTCTCCCACATGAGAACTGGAATTAAAGGTACGCGCCACCACCACCCGGC
||||--||--|||||||||-||-|---||--||||-||||||||---|||||||||---||||||
CAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAT-GCCCGGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	1694	1827	B1	1	134	d	0.79	0.79	683

GCCAGGGGAGATGACCCACAC-TTTAATCCCAGCATTTAGGAGGCAGAGGCAGGTGGATCTTTGAGTTGG
|||-||---|-||-|-|||-|-|||||||||||||-||-|||||||||||||||-||||-|-||||||-|
GCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCG

AAGGCAGTCTGGTCTACAGAGAGAGAGTCTAGGATAATTCGGGCTACACAGAGAAACCCTGTCTC
|-|-|||-||||||||||-||-|||--||-||||-|----|||||||||||||||||||||||||
AGGCCAGCCTGGTCTACANAGTGAG-TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr2:31329164-31331363	1222	1337	B1	20	133	c	0.84	0.84	637

AAACAGGATCTCACTGTGTAGCCCTGGCTGTCCTGGATCTCACTATTGTAGACCAGGCTGGCCTCAGATG
|-|||||-|-||-||||||||||||||||||||||||-||||||-|-||||||||||||||||||--|--
AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTNT-GTAGACCAGGCTGGCCTCGAA--

CTCCGCTATC-ACCTGCCTCTGCCTCCCAAGTGCTGAGACTAAAAGC
|||-|--|||--||||||||||||||||||||||||-||-||||-||
CTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.5.chr1	2058	2179	B1	11	135	c	0.77	0.77	621

CAAGACAGGGTTTCTCAGTGTAGCCTTGGCTGACCTGAGACTTACTCTGTGAACGAGGCTACTCTCAAAC
|-||||||||||||||-||||||||-||||||-||||--|||-|||-|||--||-|||||---|||-|||
CGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTNTGTAGACCAGGCTGGCCTCGAAC

ACAGAGATCTGCTTGCCTCTGTTTCCTGAGTGCTGGAATTAGAG---TGTACCAC
-||||-|||-||-||||||||--|||--||||||||-||||-||---||--||||
TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	396	513	B1	9	125	d	0.70	0.70	442

TGGTGCCTCGTGTCTTGAATTCCAGCTCCTGAGAAGGCAGAGTCAGGAAGCTCTATGAGTTTAAGGCCAG
|||||-|-|--|-|||-|||-|||||-|-||-||-|||||||-||||--|-|-|-||||||--|||||||
TGGTGGCGCACGCCTTTAATCCCAGCACTTGGGA-GGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG

CTTCATCTACAGAACAAGTTCTAGGATGGCTAGGGACATACAAATAAA
|-|--||||||-|---|||||-||||--||-||||--|-|||-|-|||
CCTGGTCTACANAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.4.chr14	1	59	B1	10	77	c	0.92	0.92	366

CTGGTCTCTAACTCAGAAATCTGCCTGCCTCTGCCTCCC-------GGGATTAAAGGCGTGC--CACC
||||-|||-||||||||||||-|||||||||||||||||-------||||||||||||||||--||||
CTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	683	744	B1	70	134	d	0.77	0.77	240

GAGGC--ATCTGCTCTATAGAGGGAGTTCC-GGTCAACCTGGGACACACAGAGAAAACCAGTCTC
|||||----|||-||||-|-||-|||||||-||-||-||-|||--|||||||||||-||-|||||
GAGGCCAGCCTGGTCTACANAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr2:31329164-31331363	1380	1442	BC1	6	70	c	0.72	0.72	208

GCTGGGGATGGAACCCAGGGCCTCAGTGCATGTTAGGCAAGT-TTCTTGTATC--CCAAATCCCCA
||||-|||--|||||||||||||--|-||-||-||||||||---|||---|----|-|||||||||
GCTGAGGACCGAACCCAGGGCCTT-GCGCTTGCTAGGCAAGCGCTCTACCACTGGCTAAATCCCCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr2:31329164-31331363	1815	1867	L1MA4A	721	772	d	0.75	0.75	208

AGAGGCCGGAGAGTGAGAAGGGTGGGTGGGGGGCAGAGGAGGGTGAGGAGAGG
|||--||-|||--||-||||||||-|||||-||-||-||-||-|||-||||||
AGATACCAGAGGCTGGGAAGGGTGTGTGGGTGGGAGGGG-GGATGAAGAGAGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
lcl|chr3_random:411470-413669	1549	1680	Sat-CR1_GG	607	747	d	0.79	0.79	541

TGTGGATGCCCCATCCCTGGAGGCATTCGAGGCCAGGCTGGACGTGGCTCTGGGCAGCCTGGGCTGCTGG
||-|||||||-||||||||||||||||-|||-|||||||||--|||||||||-||||||-||-||-||||
TGGGGATGCCTCATCCCTGGAGGCATTGGAGCCCAGGCTGGGTGTGGCTCTGCGCAGCCCGGTCTACTGG

TTGGCGACCCTGCACA---TAGC---AGGGGGTTGGAACTGGATGAGCACTGTGGTCCTATCC---CCAG
||||||||||||--||---||||-----||-||||-||||---||--|--||-||||||-|-|---||||
TTGGCGACCCTGTGCAACTTAGCCCGGCGGCGTTGAAACTCCGTGGTCCTTGAGGTCCTTTTCAACCCAG

G
|
G

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.9.chr17	792	873	CANDYSTRIPE1	4641	4712	d	0.72	0.72	253

CACACACAGGCATACATAGATATACAGATAAACACAGGCACACACAAATACACACATACACAGGCATACA
||-||||-||||--|||-------|||---|||||||||||-|-----|-||--||-|||||||||--|-
CAAACACGGGCACGCATG------CAGCCGAACACAGGCACGCG----TGCAGCCAAACACAGGCACGCG

TACAGCCACACA
|-||||||-|||
TGCAGCCAAACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	622	728	B3	6	112	d	0.69	0.69	419

TGGAGAGAAGTTGCAGTGGTCAAGGCTACGTGTTGCTCTTCCTGAGGAACTGGGTTCAGTTCCCAGGAAT
||||||||-|---|||-|||-|||---||--|-|||||||-|-|||||-|-||||||-||||||||-|--
TGGAGAGATGGCTCAGCGGTTAAGAGCACTKGCTGCTCTTSCAGAGGACCCGGGTTCGGTTCCCAGCACC

CATATGATGGCTCATACTTGTTCAAAACTCAAGCTCC
||-|||--||||||-|---||----|||||-||-|||
CACATGGCGGCTCACAACCGTCTGTAACTCCAGTTCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.1.chr4	540	573	B3	47	81	d	0.83	0.83	218

CAGAG-ACCTGAATTCGGTTCCTAGCACCCATATG
|||||-|||-|--|||||||||-||||||||-|||
CAGAGGACCCGGGTTCGGTTCCCAGCACCCACATG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.1.chr4	1577	1763	B2	1	194	d	0.92	0.92	1424

GGGCTGGTGAGATGGCTCAGCGGTTAAGATTGCC-GACTGCTCTTCCAAAGGTCCTGAGTTCAAATTCCA
|||||||-||||||||||||-||||||||---||-|||||||||||||-|||||||||||||||-|-|||
GGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCA

GCAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTGATTCTCTCTTCTGGAGTGTCTGAAGACAG
||||||||||||||||||||||||||||||||-||-|||||||-|-|||||||||-||||||||||||||
GCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAG

CTACAGTGTACTTACATATAATAAATAAATAAATA------TTTTAAAAAAAAA
|||||||||||||||||||||||||||||||||||------|-|||||||||||
CTACAGTGTACTTACATATAATAAATAAATAAATAAATAAATCTTAAAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.1.chr4	2052	2191	B2	55	208	c	0.91	0.91	987

TTTTCTTT-TCTTTTCTTTTTTTAAGATTTGTTTATTT------------TATGTAAGTACACTGTCACT
||||||||-|-||||-||||||||||||||-|||||||------------||||||||||||||||--||
TTTTCTTTCTTTTTTTTTTTTTTAAGATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCT

GTCTTCTGATACACCAGAAGAGGGCATCAGAGCCCATT-CAGATGGTTGTGAGCCACCATGTGTTTGCTG
||||||-||-|||||||||||||||||||||-|-||||-||||||||||||||||||||||||-||||||
GTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTG

GGAATTGAACTCAG
||||||||||||||
GGAATTGAACTCAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	762	885	B2	1	125	d	0.83	0.83	775

GGGCTGGAGAGATGGCTCAACAGTTAAGAGTACCAG-CTGCTCTCCCAGAGGACCTGAGTTCAATTCCCA
|||||||||||||||||||---||||||||-|||-|-|||||||-|||||||-|||||||||||||||||
GGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCA

GCAACCTCGTGGTGGTTCATGCCCATCTATAATAAACTCTGATGACCGCTGCTGG
||||||-|-||||||-|||---||||||-||||-|--|||||||-||-||-||||
GCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.1.chr4	1775	1867	SINEB2_MU	1	94	c	0.77	0.77	446

TGGTAATGAGCCACCCTGTAGGTACCTGGGATAAAATTTGGGACTCTTA-AAGAACAGCCAGTGCTCTTA
||||--|||||||||-|||-|-|-|--||-||--||-|--||||--||--||||-|||||||||||||||
TGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGCCAGTGCTCTTA

ACCAATGAGCCATCTCTCTAGCCC
|||--|||||||||||||-|||||
ACCTCTGAGCCATCTCTCCAGCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.4.chr14	2153	2201	SINEB2_MU	4	52	d	0.82	0.82	275

CTGGAGAGATGGATCAGCACCTAAGAGCACTGACTGCTCTTTCGAATGT
||||||||||||-||||----|||||||||||-||||||||-|-||-||
CTGGAGAGATGGCTCAGAGGTTAAGAGCACTGGCTGCTCTTCCAAAGGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.4.chr14	2031	2139	B1F	3	112	d	0.72	0.72	422

CAGGTATGGTGGTACATGCCTGTTTTCCCAGAACTTGGGAGCCTGAGGCAGGAGGAT-TGTCAAGCATTC
||||-||-||||-|||--|||||--||||||-||||-||||-|||||||||||||||-||----|--||-
CAGGCATAGTGGCACACACCTGTAATCCCAGCACTTAGGAGGCTGAGGCAGGAGGATCTGCTGTGAGTTT

AGGGCCAGGTAGGGCTCCATAGCGAGATTCTGGCCTGCTT
---|||||---|||||-|||||-|||-|-|-||||-||-|
GAAGCCAGCCTGGGCTACATAGTGAGTTCCAGGCCAGCCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	1208	1282	B1F	12	91	d	0.79	0.79	389

TGACACACACCTGTACTTCCTACACTCAAGAGGCTGAGGCAGGAGAGTTT----TGA-TTCCAGGCTAGC
||-||||||||||||-|-||--||||-|-||||||||||||||||--|-|----|||-||--|-||-|||
TGGCACACACCTGTAATCCCAGCACTTAGGAGGCTGAGGCAGGAGGATCTGCTGTGAGTTTGAAGCCAGC

CTGGGCTACA
||||||||||
CTGGGCTACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	1233	1349	B1F	21	151	d	0.74	0.74	409

CCTTTAATCTCAGCATGGATGAGCTAAAGGCAGGCAGAGCT-CTGTGACATCCAGGCTAGCCTGATCTAC
|||-|||||-|||||---|-|||----|||||||--||-||-||||||--|--|-||-||||||--||||
CCTGTAATCCCAGCACTTAGGAGGCTGAGGCAGGAGGATCTGCTGTGAGTTTGAAGCCAGCCTGGGCTAC

ATAGAGAGCTCCAGA---------GCTACATAGTGAGTC----TTTCAAAAAAAAAAAAAA
||||-|||-|||||----------||||||-||||||-|----|-||||||||-|||||||
ATAGTGAGTTCCAGGCCAGCCTGGGCTACACAGTGAGACCCTGTCTCAAAAAACAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.6.chr11	2	93	B1F	21	142	d	0.78	0.78	318

CCTGCAATCCCAA---TTGGGAGG---AGGCA-----------TTCGAGGTCAAGGCCAACCTTGGCTAC
||||-|||||||----||-|||||---|||||-----------|--|||-|--|-||||-|||-||||||
CCTGTAATCCCAGCACTTAGGAGGCTGAGGCAGGAGGATCTGCTGTGAGTTTGAAGCCAGCCTGGGCTAC

ATCGTAAGTTTGAGGC----------TACA---TGAGACCCTGCCTCAAAAA
||-||-||||--||||----------||||---||||||||||-||||||||
ATAGTGAGTTCCAGGCCAGCCTGGGCTACACAGTGAGACCCTGTCTCAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	334	464	B1F	1	148	d	0.66	0.66	309

GCCAGGTGTGTTGATAACTGCTTGCAATCCCGGCACTGAGGAGATACAACCAGAAGGATAAGATGTT---
||||||--|--||--|----|-||-||||||-|||||-|||||----|--|||-|||||--|-|||----
GCCAGGCATAGTGGCACACACCTGTAATCCCAGCACTTAGGAGGCTGAGGCAGGAGGATCTGCTGTGAGT

----------CTTAGAC-ACATAATGAGTTCAAGGGCAGCCTGGGATAC---TTAAGATCCTACATCAAG
----------|-|-|-|-|||||-|||||||-|||-|||||||||-|||----|-|||-|||---||||-
TTGAAGCCAGCCTGGGCTACATAGTGAGTTCCAGGCCAGCCTGGGCTACACAGTGAGACCCTGTCTCAAA

GGAAAAAA
--|-||||
AAACAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	571	605	ATHILA_I	6713	6747	c	1.00	1.00	286

TTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTT
|||||||||||||||||||||||||||||||||||
TTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	750	820	MER3	1	71	c	0.72	0.72	332

TGGCTATTTTCTTGAACAATATAGCTACAGAGCATTTCCACCATCACAGAAAGTTCCACTAGAAAGCACC
||||||---|-|||-|||----||-||-|||-||||||||-||-||||||||||||-|-|-||-|||-|-
TGGCTACCGTATTGGACAGCGCAGATATAGAACATTTCCATCACCACAGAAAGTTCTATTGGACAGCGCT

G
|
G

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	1176	1250	L1ME3	508	584	d	0.72	0.72	247

GAATGGTTAAATAAAATAAGGCATATTCACTAAATGGAATATAACATAAAAGTTTAAGGGAACAAACTA-
||||||-||||-|||-|--||-|||||||---|||||||||--|||-|--|-|--||-|||||-|||||-
GAATGGATAAACAAATTGTGGTATATTCATACAATGGAATACTACACAGCAATAAAAAGGAACGAACTAC

-GATATA
-||||-|
TGATACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	1579	1910	MSTD	60	396	d	0.67	0.67	891

ATAGTTTTAAAAGATGAGACTTC-TAGGAGGTGACCAGGTTGGGAGGCTTTTGCCTTCAAAAATGAACTA
|-|||-||---||-||-|-|-|--||-|||||||--||||---||||--|-||||-|||--||||-|-||
ACAGTGTTGGGAGGTGGGGCCTAATAAGAGGTGATTAGGTCATGAGGGCTCTGCCCTCATGAATGGATTA

GAGCCATCATCATGACAGTCTCTTTGACATTATGGGAGTGGCAATCTTACCAAGGCTGAGT---GCCCTC
--|-|||-|||--|--|||---||-|--||---||||||||---|-|||--||-|---|||---||||-|
ATGTCATTATCGCGGGAGTGGGTTAGTTATCGCGGGAGTGGGTTTGTTATAAAAGN-AAGTTCGGCCCCC

CCTGTCTCTCTTGAGTGCCCTGTTGCTTTGTGACCC-----CCTTCTGCCATCTTATGATGCAACAAGAA
--|--||||||------|-||-|--||-|-|--|||-----|||||-|||||---||||-|||-||||||
TTTTGCTCTCT------CNCTCTCACTCTCTTGCCCTTCCGCCTTCCGCCATGGGATGACGCAGCAAGAA

GGCCCTCTCCAGATGCAA--CCTTTGATCTGTGATGTTTCAGCCTTCAGAACTGTGAGGCAAA--AACTT
|||||||-||||||||-----|--||||||--||--|--||||||-||||||-|||||-||||--||-||
GGCCCTCACCAGATGCCGGCNCCWTGATCTTGGACTTCCCAGCCTCCAGAACCGTGAGCCAAATAAATTT

GTACTATTTAGAAATTACTAAAGCTGTGATATTCTTATATAAGCAACAGAGAATGTACTAAGACA
-|--|-||||-|||||||--|--|||||-||||||--||||-|||-||-|-||-|-|||||||||
CTGTTCTTTATAAATTACCCAGTCTGTGGTATTCTGTTATA-GCAGCACAAAACGGACTAAGACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.2.chrX	1951	2200	RLTR9A	96	363	c	0.81	0.81	1287

TGTAGAGGCCAGCAGCCACAGAGAACTGGGTACCTGAAAGGAGAGCTGGGGATGGATGGGAAGGAGAGAC
|||||--||||||-||||--|----||||||-||||||||||-||||||||-||||||||||||-|-|-|
TGTAGCCGCCAGCGGCCATGGSTTCCTGGGTTCCTGAAAGGAAAGCTGGGGTTGGATGGGAAGG-GCGGC

AAGAGAGGAATGAGA--CCAAGACAAAGTT-TCTGACCAAGGCCCAATGTTTAATTCTTAAGTCTGAATT
-|||||--|||-||---|||||||||||||-|||||-|||||||||||-||||-||-||--|||||||--
GAGAGA--AATAAGGAGCCAAGACAAAGTTCTCTGATCAAGGCCCAATSTTTACTTTTTGGGTCTGAACC

T---AAAGGGGGGAACCTATTTCCCACTTTGCCAGGATCT--------GTCAGGA--------AAGCAAG
|---||-|||||||-||-||--||||||-|||||||||||--------|||||||---------|-||||
TTAAAAGGGGGGGAGCCCATCCCCCACTATGCCAGGATCTCGTGGCTTGTCAGGATCTCCTTAGAACAAG

CTCAGCTGCTCAGCAGGTAGTGGCTTCTTGTAGGAAGCTGCAGATGTGACAGGACAACAGAC
||||||--||||||||||||||||-|||||-|||||||||||||||||-|||-||||-||||
CTCAGCCKCTCAGCAGGTAGTGGCGTCTTGSAGGAAGCTGCAGATGTGGCAG-ACAATAGAC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	58	193	CR1-9_SP	2134	2278	c	0.76	0.76	524

AGAAGAA--GAAGAAGAAGAAGAAGAAGAAAAGAAGA----AGAAGAA-GAAGAGGAGGAGGAGG--AAG
|||||||--|||-||-|--||-||--||-|||||--|----|-||-||-||--||-|||||-|||--|||
AGAAGAAACGAAAAATAGAAATAAAGAGTAAAGAGAATAATATAATAATGATAAGTAGGAGAAGGTGAAG

AAGAGGAGGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
|||-|-||-|||||||-|||||-|||||-|||-||||||--|||||||||||-|-|||||||||||||||
AAGGGAAGAAAGAGGAAGAAGAGGAAGACGAAAAAGAAGTGGAAGAAGAAGAGGCAGAAGAAGAAGAAGA

AGAAG
--|||
GAAAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	217	312	CR1-9_SP	2134	2229	c	0.79	0.79	479

GAAAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAGAGGATGAGGAAGAAGAAGAAGAAGAAGA
||-|||-||-|||||--||-||-|-|-||-|||||||-||||||||-||-|||-||||||--||||||||
GATAAGTAGGAGAAGGTGAAGAAGGGAAGAAAGAGGAAGAAGAGGAAGACGAAAAAGAAGTGGAAGAAGA

AGAAGAAGAAGAAGAAGAAGAAGAAG
|||-|-|||||||||||||||--|||
AGAGGCAGAAGAAGAAGAAGAGAAAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	322	386	CLAUDIA1_TM	2305	2379	d	0.88	0.88	374

AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA----------TGGTTGCGATGACAGAATGA
||||||||||||||||||||||||||||||||-|||||||----------||-||--|||||||--|-||
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGAAGAGCAAGGAATATGATTCTGATGACAACAAGA

AGAAG
|||||
AGAAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.8.chr12	1	837	L1_MM	5539	6389	d	0.80	0.80	4434

AGAGAATGTAGTACATTTGCACAATGGATTACTACTCAGCTATTAAATC-AATGGATTTATGAAATTCTT
|||-|||||-||||||-|-|||||||||-||||||||||||||||||---||||-|||||||||||||-|
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT

AGGCAAATGGATGAATCTGGAGGCTATCATCCTGAGTGAGGTAACACAATCACCAAAGAAAC-CACATGA
||-||||||||||-|-|||||||--|||||||||||||||||||||||-||||-||||||||-||||--|
AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC-AAAGAAACTCACACAA

TATGCAATCACTGATAAGTGGTTATTATCTCAGAAACTCAGAATATCCAAGATACA-----T--TTTGCA
||||-|-||||||||||||||-|||||-|-|--||||--||-|||-||||||||-|-----|--|||||-
TATGTATTCACTGATAAGTGGATATTAGCCCC-AAACCTAGGATACCCAAGATATAAGATATAATTTGCT

AAACACATGAAACTCAAGAAGAAGGAAGACAAAAGAGTGGATATTTTGATCCTTCTTAGAAGGGGGAA--
||||||||||||||||||-||||-||||||--|||-|||||-|-|-||--|||-||||||---|||||--
AAACACATGAAACTCAAGGAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACA

AAATACCCATAGAAGGAGTTACCGAGACAAATTTTGGAGCTGATACAGAAAGATGGACCATCCAGAGACT
|||-||||||-|||||||||||-|||||--|-|||||||||||-|---||-||||||||||--|||||||
AAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACT

GCCCAACCTGGGGATCCATTCCATTATCAGCCACTAAACAC------------ATATGCCAGCAATAGTT
|||--|-|--||||||||--||||-||||||--|-||||-|------------|||--|-|||||-|-||
GCCATAGCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTT

TGCTGAAAGTACCCTGATAAAGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAATTATAGAAGTGGAT
|--||||||-||-|-|||--||||||||||||||||-|||||||-|-|||--||||--|-||||||||||
TATTGAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGGAT

GCTCACAATCATCTATTGGATGGAGCACAGGGTCCCCAGGGGAGGAGCTAGAGAAAGTACCCTAGGAGCT
|||||||-|||-|||-||||||||-||-||||--||||--|||||||||||||||||||-||-|||||||
GCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCT

GAAAGGGTCTGCAACCCTATAGGAGGACCAACAATATGAACTAACCAGTACTCCCAGAGCTCGTGTCTCT
-||-||-||||||||||||||||-|||-|||||-|||||-|||||||||||-|||-||||||-||-||||
AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTAC-CCCGGAGCTCTTGACTCT

AGCTGCACATGTAGCAGAAGATGGCCTTGTTGGCCATTCTTGTGAAGAGAGGCCCTTTGGTCTTGCAAAC
|||||||-||-||-||-||||||||||-||-||||||---||--|||||||||||-||||-|||||||||
AGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAAC

TTTATATGTATCAGTACAGGGGAATGCCAGGGCCAGGAATTGGGAGTGGGTAAGTTGGGGAGCAGGACGG
||||||||---||||||||||||||-|||||||||--||--||||||||||--|--||||||--||--||
TTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGG--GG

GGGGAGGGTATAGGGGACTTTCGGGATAGCATTTTAAATGTAAATGAAGAAAATATCTAATAAAAATGTT
-|||-||-|||-|||||||||-||-||||||||--||||||||||||---|||||-||||||||||----
TGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAA----

ATAAAACAAAACAAAAATCC
||--||-||||-|||||-||
ATGGAAAAAAAAAAAAAACC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.5.chrX	387	984	L1_MM	5053	5676	d	0.86	0.86	3967

AAAAGGTAGATTTTCAGAA--CCAAATAGCCCTATTAAAAA-TGAGGTACAGATCTAAACAAAGAATTCT
|-|||||-||-||-|||||---||||||-|||-||||||||-||-||--||||-||-|||||||||||||
AGAAGGTGGACTT-CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCT

CATCTGAGACATATTGA-TGAACAAGAAGCACCTAAAGAAATGTCCAACATCCTTAGTCATCAGGGAAAT
||-|||||--|||--||-||----||||||||||-||-||||||-|||||||||||-|||||||||||||
CACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT

TCAAATCAAAACAATCCTGAGATTCCACCTCATACCATTCAGAATGGCTAAGATTAAAAGTTCAGGTGAC
-|||||||||||||-|||||||||||||||||-||||-||||||||||||||||-||||-||||||||||
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC

AACAGATGCTGGTGAGGATGTGGAGAAAGAGGTACACTCCTCCATTGCTGGTGGGATTGCAAGCTAGTAC
|-||||||||||-|||||||||||||||||||-||||||||||||||-||||||||-||||-|||-||||
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTAC

AACCACCCTGAAAATCAGTTTGGTGGTTCCTCAGAAAATTGGAC------------------CCGGCAAT
||||||-|||-||||||||-|||-||||||||||||||-|||||------------------||-|||||
AACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAAT

ACCACTCCTGGGCATATACCCAGAAAATGCTCCAACATGCAATAAAGACACATGCTCCACTATGTTCATA
|||-||||||||||||||-||||||-||||-||||||-|-||-||-||||||||||||||||||||||||
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATA

GCAGCCATATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGGTACAGA
||||||-|||||||||||||||||||||||||||||||-|||||-||||||||||||||||||-||||||
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA

AAATGTGGTACATTTACACAATGGACTACTACTCAGCTATTAAAAACAATGACTTCATGCAATTCTTAGG
|||||||||||||-|||||||||||-||||||||||||||||||||-|||||-||-|||-|||||-|||-
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC

CAAATGGACAGAATTATAAA--AT-ATCCTGAGTGAGGTAACCCAGTCACAAAAGAAA---ACACA
||||||||--||--|--|----||-|||||||||||||||||-||-|||||||-||||---|||||
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA-GAAACTCACACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.3.chr18	732	1005	L1_MM	6105	6383	d	0.91	0.91	2059

CTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATA
|||||||||||||||||||||||||-|||||-|||||||||||||-||||||||||-||-||||||||||
CTGCAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA

TGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGATCCATTGGACTTGCAAACTTTATATGC
|-|||||||||||||||||||||||||||||||-||||||||--||||||||||||||||||||||||||
TATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGC

CCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGG--GGTGGGTAT
|||||||||||||||--||||||||||||||||||||||||||||-||||||-||||||--|||||-|||
CCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATAT

GGGGGACCTTTGGGATATCATTGAAAATGTAAACGAGGAAAATTCCTAATTAAAAA---AAAAAAAAAA
|||||||-|||||-|||-|||||-|||||||||-|||--||||-||||||-|||||---||||||||||
GGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.8.chr12	1551	1751	L1_MM	6186	6385	d	0.80	0.80	895

ATAGCTTAGTCAGCCATCATT---AAGAGAGGCCCATTGGTCTTATGAAGATTATATGCCCCA-CACAGG
||-||-|||||-|||||||-|---||||||||||||||||-|||---||--||||||||||||--|||||
ATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGG

GGAACACCAGGGCCAGGAAATTGGAGTGGGTGGGTTTGGGAGCTGGGTGGGGGGATGG-TATAGGGGACT
||||-||||||||||--||---||||||||||||---|||||-||||--||-||-|||-|||-|||||||
GGAATACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAG-TGGG--GGTGGGTGGATATGGGGGACT

TTCAGGATAGCATTTGAAATGTAAAATCTAGA---AAGTATCTAATAAAA--TGTTTTGAAAAAAACAGA
||--|-||||||||-||||||||||-|---||---||-||-|||||||||--||----||||||||-|-|
TTTGGTATAGCATTGGAAATGTAAA-T---GAGTTAAATACCTAATAAAAAATG----GAAAAAAAAAAA

A
|
A

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.9.chrUn_random	1547	1727	L1_MM	6186	6368	d	0.78	0.78	801

ATGGCTTAGTCACTCATCATTAG---GAGAGGCC--TTGGGTCTTGCGAAGATTATATGCCCCA-CACAG
|||||-|||||---|||||-|-|---||||||||--||||--|||||-||--||||||||||||--||||
ATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGA-CTTGCAAACTTTATATGCCCCAGTACAG

GAGAATGCCAGGGCCAGGAAAATGGGAGTGGGTGGGTTTGGGAGCAGGGTTGGGGGGTGG-TATAGAGGA
|-||||-|||||||||--|||--|||||||||||||---|||||--|||---|-||||||-|||-|-|||
GGGAATACCAGGGCCAA-AAAGGGGGAGTGGGTGGGCAGGGGAGTGGGG---GTGGGTGGATATGGGGGA

CTTTCAGGATAGCATTTGTAATGTAAAATGAAG-AAATATCTAATAAAA
||||--|-||||||||-|-||||||||-|||---|||||-|||||||||
CTTTTGGTATAGCATTGGAAATGTAAA-TGAGTTAAATACCTAATAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.5.chrX	2051	2092	L1_MM	6009	6050	c	0.98	0.98	372

TCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC
||||||||-|||||||||||||||||||||||||||||||||
TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.4.chr14	1243	1343	ERVB1_1-I_RN	5446	5551	d	0.69	0.69	348

TTCCTGGGATTGGAG-TGTAGCTCAGAGGTCTAATGCATGCTTAACATACATAAGGCCTTGGATCTGCTC
||-|-|||-||||-|-|-||||||||-|||--|--||-|||-||-||--|--||-|||-|||-|--|-||
TTACCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAAGCCCTGGGTTCGGTC

CCCAG----GATAAGAGGGAAAAAGGAAGAAAGAAA
|||||----||-||-|-|-||||||-||-|||-|||
CCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.5.chrX	128	213	MLT1A1	302	391	d	0.69	0.69	221

CTTATTCTTGGAGTTTC-AGATGCTGTAGCTGTAAGCAATAAAGT-ATGTTCC--ATGAAGTACTCATTT
|||--|||||||-||-|-||---|---|-||||-||-||||||-|--|||||---||-||-|||-||-|-
CTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTCTTTATAAATTACCCAGTC

TTAACTGTTTTGTTATAGCA
|-|--|-|||||||||||||
TCAGGTATTTTGTTATAGCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.5.chrX	1146	1226	TDR7	249	333	c	0.73	0.74	206

AAATAAAGATTTTTTAAAAAAGAAAGGAAAGA--AAGAAAGAAAGAAAGAAAGAAAGAAA-----GAAAG
|||||-|-||||||-||||||||--|||||-|--||||-|---|-|||-|||-|||-|||------|||-
AAATACAAATTTTT-AAAAAAGA--GGAAAAATCAAGAGAAGCAAAAAAAAAAAAAAAAATHAATAAAAT

AAAGAAAGAAAGAAAGAA
|||-||+-|||-|||-||
AAATAARTAAAAAAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.7.chr15	182	233	BGLII	173	230	c	0.81	0.81	239

CTCCCTCCTCCTC------CTCCTCCTCTTCCTCCTCCTCCTTCCCCCCCCTCTCTCC
||-||||||||||------|||-|||||||||-|-|-|||||||--|||||-|-||||
CTTCCTCCTCCTCTGCATTCTCTTCCTCTTCCACTTTCTCCTTCATCCCCCACCCTCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.7.chr15	1850	2114	LX9	571	846	c	0.65	0.66	724

TGAGTTCATGTGTTCAAGTGACC-TGACTTGTCCAAAAAATATTATCCTGTAGC--TATCTACTA-CCTC
|||||||-||-||--||-||-||-||-|-|||+||-||-|-|--||-----|||--|--|--|-|-||||
TGAGTTCGTGAGTGTAA-TGGCCATGTCATGTYCAGAAGACAGCATTTCACAGCACTCCCCCCCATCCTC

TGGCTCTTACAGTCTTTCTGCCTCCTCTTCTACCACAATCTCTGAGCCTTGCAGGGGGAGTGTGACATAG
-||||||||||-||||||||||||-|||||--|-|---||-|||||---|-|-|---|---||-|-||||
CGGCTCTTACANTCTTTCTGCCTCTTCTTCCNCAATGTTCCCTGAGAGCT-CGGAATGTNNGTAATATAG

ACATCCCACTGGGGACTGAACACTAA---GTCTCTCTCTCTCA--ACTGTGGCCACTTGTGTGTCTCTGT
|--|||||-|--||-||||-||||-|---|||-+|---|||||--|||-||-|||-||-||-|||||||-
ATGTCCCATTTAGGGCTGAGCACTCAACAGTCAYTTATTCTCAGCACTTTGACCAGTTATGAGTCTCTGC

GTTAATCAACATCTACTAAAGAAAAAAACTTCTATGATGAGAGTTGAGAGT----CTTATTTATGAGT
|-|||-|-----|-|||--|-||---|||||||-|||--|-|||||||||-----||-||-||||-||
GCTAACCGCTGCCCACTGCAAAAGGGAACTTCTCTGACCAAAGTTGAGAGCAGCACTAATCTATGGGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.9.chrUn_random	1017	1079	RLTR15B_MM	5	67	d	0.71	0.73	230

GGGTCTGGCATGGCTGTGGAAGGGGGGCTCTGACACAGTTCATGCTCCTGGAGCATCCCCAGC
|-|||--|||||||--||||||||--|-|-|||||--||||-|+|-||||||-||---|||||
GAGTCCTGCATGGCCATGGAAGGGATGGTGTGACATGGTTCCTRCCCCTGGAACAGAGCCAGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.8.chr12	1017	1079	RLTR15B_MM	5	67	d	0.70	0.71	219

GGGTCTGGCATGGCTGTGGAAGGGGGGCTCTGACACAGTTCGTGTTCCTGGAGCATCCCCAGC
|-|||--|||||||--||||||||--|-|-|||||--||||-|+--||||||-||---|||||
GAGTCCTGCATGGCCATGGAAGGGATGGTGTGACATGGTTCCTRCCCCTGGAACAGAGCCAGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.9.chrUn_random	1984	2038	CUMULE	2032	2088	d	0.79	0.79	250

CTGAAGGATTTACATGCAT--AAAATTAAAAACTTTGTAAAAATTCATTTCTGTTCT
||||||||||-|-||--||--||-||||||||-|-|||-|||-||||||--||||||
CTGAAGGATTCAAATATATTCAAGATTAAAAAGTATGTGAAAGTTCATTCATGTTCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
mmu.U11.8.chr12	1989	2043	CUMULE	2032	2088	d	0.75	0.75	212

CTGAAAGCTTTACATGCAT--AAAATTAAAAACTTTGTAAAAATTCATTTCTGTTCT
|||||-|-||-|-||--||--||-||||||||-|-|||-|||-||||||--||||||
CTGAAGGATTCAAATATATTCAAGATTAAAAAGTATGTGAAAGTTCATTCATGTTCT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.4.chr9	609	1537	L1PB4	36	900	d	0.82	0.82	4009

CAACAAGCAAAAAACAAATATTCCAATTTAAAAATGGGCAAAGGACATGAACAGATACTTCTCAAAACAA
|||||||-||||||||||-|--||-|||-||||-|||||||||||||||||||||-|-||-||||||-||
CAACAAGAAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACATTTTTCAAAAGAA

GACAGAAAAATGGCCAACAAACAT--GAAAAAATGCTCATCATCACTAATCATCAGAGAAATGCAAATCA
||||-|-||--|||||||||||||--|||||||||||||-||||||||||||||||||||||||||||-|
GACATACAAGCGGCCAACAAACATATGAAAAAATGCTCAACATCACTAATCATCAGAGAAATGCAAATTA

AAACCACAATGAGGTACCATCTCACACCAGTCACAATAACTATTATTAAAAAGTGAAAAAAAATATCAGA
|||||||||||||-||||||||-||||||||||-|||--|||||||||||||||-||||||---|-||||
AAACCACAATGAGATACCATCTTACACCAGTCAGAATGGCTATTATTAAAAAGTCAAAAAA--CAACAGA

TGCTGGCGAGGCTGTGGA---------ATGCTTGTACCCTGCTGGTGGGAATGCAAATTAGTTCAGCCAC
||-||||||||-||-|||---------|-||||-|||-|||-|||||||||||-||||||||-||-||-|
TGTTGGCGAGGATGCGGAGAAAAGGGAACGCTTATACACTGTTGGTGGGAATGTAAATTAGTACAACCTC

TGTGGAATGCAGTTTGGATATTTCTCTAAGAACTTAAAACAGAACTACCATCTGACCCAGCAATTCCATT
|-|||||--||||-||||-|||||||-|||||||-||||-|||||||||||--||-||||||||-|||-|
TATGGAAAACAGTATGGAGATTTCTCAAAGAACTAAAAATAGAACTACCATTCGATCCAGCAATCCCACT

ACTGGGTATATACCCAAAGGAATATAAATCATTCTACCAAAATGATACATGCAAAAAAGGGCTTCTGTCA
|||||||||-||||||||||||-|-||||||||-------------------------------------
ACTGGGTATCTACCCAAAGGAAAAGAAATCATT-------------------------------------

TGAGTGGCACACGTAGGGCAACTCGATTGCTCTGCATGCGGAATCGACATCAAAATGATACATGCACACA
----------------------------------------------|-|||||||-|||||-|||||-|-
----------------------------------------------ATATCAAAAAGATACCTGCACTCG

TATGTTCATCTCAGCACTATTCACAATAGCAAAGGCATAGAATCAACCTAGGTGCCCATCAACAATGGTA
||||||-|||-|||||||||||||||||||||||--||-|||||||||||-|||-|||||||---|||--
TATGTTTATCGCAGCACTATTCACAATAGCAAAGATATGGAATCAACCTAAGTGTCCATCAA---TGGAT

GATTGGATAAATAAAATGTGGTACATATACATCATAGAATACTACACAGCCATAAAAAAGAGCAATATGA
||-||||||||-|||||||||||-|||||||-|||-|||||||||-|||||||||||||||---|-||-|
GACTGGATAAAGAAAATGTGGTATATATACACCATGGAATACTACTCAGCCATAAAAAAGAATGAAATCA

TATCCTTTGCAGGAACATGGATGCATCTAGAGGCCATTGTCCTAAGTGAGTTAATGCAGAAACAGAAAAC
|-||-|||||||-||||||||||-|-||-|||||||||-||||||||||--|||--||||||||||||--
TGTCTTTTGCAGCAACATGGATGGAACTGGAGGCCATTATCCTAAGTGAAATAACTCAGAAACAGAAAGT

CAAATACTGCATGTTCTCACTTATAAGTAGGAGCTAAACAATGAGTACACATGGGCATA-AAATTGGAAC
|||||||-||||||||||||||||||||-||||||||||||||-||||||||||-||||-|-|-|||||-
CAAATACCGCATGTTCTCACTTATAAGTGGGAGCTAAACAATGKGTACACATGGACATACAGAGTGGAAT

AATAGACACTGGGGACTCCCAAAAGT-------TGGGGGAGGGGTGGACATGGGCTGAAAAA----CCAT
||||||||||||-|||||--|||-||-------||||-|-||||||-----|||-|||-|||----|-|-
AATAGACACTGGAGACTCMGAAAGGTGGGAGGGTGGGAGGGGGGTGA----GGGATGAGAAATTACCTAW

TGGATACTATGCTCACTACCTGGGTGACAGGATCATCTATACCTCAGACCTCAACATCACACAATACA--
|||-|||-|||--|||||---||||||--|---||---|-|-|-|||||-|||-||--||-|||||-|--
TGGGTACAATGTACACTATTCGGGTGATGGKTACACTAAAAGCCCAGACTTCACCACTACGCAATATATC

CTTGTAACAAACCTGCACATGTACCCTCTGAATCCA---AAATGAAA
|-|||||||||-||||||-|||||||-||-||||-|---||||-|||
CATGTAACAAAACTGCACTTGTACCCCCTAAATCTATAAAAATAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.5.chr19_random	1771	1839	ERVB7_1-I_MM	2367	2434	c	0.78	0.78	231

ATTAATCCTTCAGAGCTT---CCATTAGTCATCAGAATCATCTTACAAT-AAATCTTT-ATTTGTGATAG
||||||||||||-|||||---||||-|------|||||||--|||---|-|--|||-|-|||-|||||||
ATTAATCCTTCAAAGCTTTTTCCATCA------AGAATCAATTTAAGGTTAGGTCTCTGATTGGTGATAG

ATTT
||||
ATTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.6.chr15	1535	1596	L1MC3	1726	1792	d	0.75	0.75	212

GCCCTTACTCATA-AAATAAATAAAATAAGTAAATAAATAAAT-----AAATAAATAAGCCCTTTTTG
|-||-||||-|||-||||-|||-|--|||-|||||||||||||-----|-|||||||||-|--|--||
GTCCATACTGATATAAATGAATGAT-TAAATAAATAAATAAATTGAGAAGATAAATAAGTCTCTNNTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
ptr.U11.9.chr12_random	4	723	L1MC2	1	758	c	0.84	0.84	4060

ATTCATCCCTCAC-CCCTCCCCAGGAACCCG-GGCAACCTCTGATCTTTTCACTGTCTCCACAAGTTTGC
|||||||||||-|-||||||||--||||||--|||||||-||||||||||-||||||||||-|--|||||
ATTCATCCCTCCCTCCCTCCCCCTGAACCCCTGGCAACCACTGATCTTTTTACTGTCTCCATAGTTTTGC

CTTTTCCAGAATGTCATATA-CTGGAATCATATAGTATATAGCCTTTTCAGACTGGCTTCTTTCACTTAG
||||||||||||||||||||--||||||||||-|||||-|||||||||||||||||||||||||||||||
CTTTTCCAGAATGTCATATAGTTGGAATCATACAGTATGTAGCCTTTTCAGACTGGCTTCTTTCACTTAG

CATTACACATTTAAGGTTCCT----------TCATGACTTGATAGCTTGATCGTTTTTTAACCGTGAATA
||-||--||||||||-|||||----------|||||-||||||||||--||---||||||-|--||||||
CAATATGCATTTAAGTTTCCTCCATGTCTTTTCATGGCTTGATAGCTC-ATTTCTTTTTATCGCTGAATA

ATATTTCATTGTCTGGGTGAACCACTATTTATTTAACC-TTTACCTGCTGAAGGATATCTTGGTT-----
|||||-||||||-|||-||-|||||--|||-||||-||-||-||||--|||||||-|||||||||-----
ATATTCCATTGTATGGATGTACCACAGTTTGTTTATCCATTCACCTATTGAAGGACATCTTGGTTGCTTC

CAAGTTTTTTGCAATTTTTTGAATAAAGGTGCTATAAACATTTATGTGCAGG-----GGG-GAACATAAA
||||||||--||||||-|--||||||||-|||||||||||||--||||||||-----|-|-|-||||||-
CAAGTTTTG-GCAATTAT--GAATAAAGCTGCTATAAACATTCGTGTGCAGGTTTTTGTGTGGACATAAG

TTTTCAGTTCATTTGGGTAAATTCC--TGAGGGTGATCGCTGGAT-GTATATGTAAGAGTATGTTCAGCT
||||||--||||||||||||||-||---|||---|||-|||||||-||||--||||||-||||||-||||
TTTTCAACTCATTTGGGTAAATACCAAGGAGCACGATTGCTGGATCGTATG-GTAAGANTATGTTTAGCT

TTTGCAAGAAACTCCCAAACTGCCTTCCAATGTGTGTGTATCATTTTGCATTCCCACCAGCAATGAATGA
||-|-||||||||-||||||||-|||||||-|||--|||--|||||||||||||||||||||||||||||
TT-GTAAGAAACTGCCAAACTGTCTTCCAAAGTGGCTGTGCCATTTTGCATTCCCACCAGCAATGAATGA

GAATTC-TATTGCTCTTCAGCCACTTCAGCATTTGGTGTTGCCAGTGTTTGGGACTTTAGCCATTATAAT
||-|||-|-||||||--||-||-|--|||||||||||||||-|-||||||-|||-||||||||||-||||
GAGTTCCTGTTGCTCCACATCCTCGCCAGCATTTGGTGTTGTCGGTGTTTTGGATTTTAGCCATTCTAAT

AGGTGTGTAGTGGTATCTCATTGTTATTCTAATTTGCAACTCCCTAATGACATATTATGTTGAGCATCTT
||||||||||||-||||||||||||-||-||||||||||-|||||||||||||||-||||||||||||||
AGGTGTGTAGTGATATCTCATTGTTGTTTTAATTTGCAATTCCCTAATGACATATGATGTTGAGCATCTT

TTCATATGTTTATTTGCCATCTGTATGCCTT---TGGTGAGATGTCTGTTCCGATCTTT-GCTCATTTTT
||||||||-|||||||||||||||||--|||---|||||||-|||||||||-|||||||-||-||||||-
TTCATATGCTTATTTGCCATCTGTATATCTTCTTTGGTGAGGTGTCTGTTCAGATCTTTTGCCCATTTTA

AA-TTGAATTGTTT----TCTTATTGTCGA------AGGGTTCTTTGTGTACTTTGGATAGCAG
||-|||--||||||----|||||||||-||------||-|||||||||-||-||||||||-|||
AAATTGGGTTGTTTGTTTTCTTATTGTTGAGTTTTAAGAGTTCTTTGTATATTTTGGATAMCAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.1.chr9	14	368	MTD	43	404	d	0.69	0.71	913

ATGTGGGAAGAGGAAACT---AT------AATGCCTCCATCAGATTGACCTGTGC-CGAGTCTGTGGGGC
||-||||||||||-|||----||------|||||||||||||||||+-||||||--|-|||||---||-|
ATCTGGGAAGAGGGAACCTCAATTGAGAAAATGCCTCCATCAGATTRGCCTGTGGGCAAGTCTANAGGAC

ATTTTTCTGATTAATTAACTCATCTGAGACATCTCAGCCAACTG-GGATTATGCCACTCATGAATATGCT
|||||--|+|||-||--|-|-||-||--|---|-|||||-||||-||-|--|||||++|-||---|-|--
ATTTTCTTRATTGAT-GATTGATRTGGAAGGGCCCAGCCCACTGTGGGTGGTGCCAYYCCTGGGCAGGTG

ATC-------ACATAAGAAAATAAA--AAAAAAACAATCTGTAGGATAGAAGCCAGTAACCTGCGTTCAA
+||---------||||||||--|-----|--||-|-||--|-||||---||||||||||-|-||||||--
RTCCTGGRTGGTATAAGAAAGCAGGCTGAGCAAGCCAT--G-AGGA-GCAAGCCAGTAAGCAGCGTTC--

TATTCTCCAT----TCTTCGTC---TCTTACCTCTTGTTTCCTGCCCTGCTTCTGTTCCTGCCCCGGCAT
----||||||----|||-|-||---||-|-|||-|-|-||||||||--|-----||||||||||-|-|-|
----CTCCATGGTCTCTGCTTCAGTTCCTGCCT-TAGGTTCCTGCCTCGA----GTTCCTGCCCTGACTT

CTCTTAGTGATGTACTACGGCAGGGTCATGTAAGCC-AAATGAAACCTTTCTCTCTCAAGTTGGTTTTGG
|--|-|+|||||-|||----|--||---||||||||-||||-||-||||||---|-|||||||-||||||
CCTTCARTGATGGACTGTAACGTGGAACTGTAAGCCGAAATAAACCCTTTCCTCCCCAAGTTGCTTTTGG

TTTTGGTCACAGTGTTCCCCACAGCAACAGAAA
|--||||----||-|||--||||||||||||||
TCATGGT----GT-TTCATCACAGCAACAGAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.1.chr9	1912	2196	MLT1F2	61	356	c	0.62	0.62	335

GTTTAACTGGAGA--AGCACCTATTTCTAAGCTCATTGA-AGGGTTGTTGGCAATGTTTAGACCCTTGCA
|-|-||||-|||---||-|-|---|||-|||||-|-|-|----|-||||||||---||-||--|||----
GCTCAACTNGAGGGGAGGATCNGCTTCCAAGCTTACTCAYNNNGCTGTTGGCAGGATTCAGTTCCTC---

AGCTGTTGTTGGC------------TGAATTTCTTTGGCACATGGCCTCT----ATATGACAGCTTCCAT
||-||-|||||-|------------|||-||-||----||-|-|||--||----|-|||-|||||||--|
AG-TGCTGTTGACCAGAGACAGCCYTGAGTTCCTCNC-CANAGGGCAGCTCACAACATGGCAGCTTCN-T

CATCAATCAA---AGTTGAGAAG-GCAAAAGGAGTCAGATAGAAAAATGACAGTCATAATCATTTGTAGT
||---|-|||---|||-|||-||-||||-||-||--|||-||-||-||---||-||-|-||-|||-||--
CA--GAGCAAGTGAGT-GAGTAGAGCAAGAG-AG--AGAGAGCAAGATAGAAGCCACAGTCTTTTATAAC

CTAATCATGAGAGTCATATTGAATCAACTTTGCTAAATTCTATCAGTTATCCTGAAA----TTGCTAGAC
||||||-----|||-|-||---||||--|||||-|-|||||||---|||----|||-----|--||||--
CTAATCTCAGAAGTGACATCCCATCACTTTTGCCATATTCTATTCATTA----GAAGCAAGTCACTAGGT

CCAGTCCATGTTTCAGAAACTGAGACTGCACA
||||-|||---|--||-----|-||-|-||||
CCAGCCCACACTCAAGGGGAGGGGATTACACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.2.chr4	2	1974	L1_RN	4600	6384	d	0.93	0.93	12981

ACAAAAGAGAAACAAGCCGAGAAA----TTAGGGAATCGACACCCTTCATAGTAGACCCAAATAATATAA
||||||||||||||||||||||||----||||||||-||||||||||||||-||||||||||||||||||
ACAAAAGAGAAACAAGCCGAGAAAGAAATTAGGGAAACGACACCCTTCATAATAGACCCAAATAATATAA

AGTACCTCGGTGTGACTTTAACCAAGCAAGTAAAAGATCTGTACAATAAGAACTTCAAGACTCTGAAGAA
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||-||||-|||
AGTACCTCGGTGTGACTTTAACCAAGCAAGTAAAAGATCTGTACAATAAGAACTTCAAGACACTGAGGAA

CGAAATTGAATTAGACCTCAGAAGATGGTAAGATCTCCCATGCTCATGGATTGCCAGGACTAATATAGTA
-|||||||||--||||||||||||||||-||||||||||||||||||||||||-|||||-||||||||||
AGAAATTGAAGAAGACCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGTA

AAAATGGCCATTCTACCAAAAGCGATCTACAGATTCAATGCAATCCCCATCAAAATACCAATCCAATTCT
||||||||||||-||||||||||-||||||||||||||||||||||||||||||||||||||||||||||
AAAATGGCCATTTTACCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATACCAATCCAATTCT

TCAAAGAATTAGACAGAACAATTTGCAAATTCATCTGGAATAACAAAAA-CCAAGGATGGCTAAAACTAT
|||||||-|||||||||||||||||||||||||||||||||||||||||-||-|||||-||||||-||||
TCAAAGAGTTAGACAGAACAATTTGCAAATTCATCTGGAATAACAAAAAACCCAGGATAGCTAAAGCTAT

TCTCAACAATAAAAGGACTTCAGGGGAAATCACTATCCCTGAACTCAAGCAGTATTACAGAGCAATAGTG
-|||||||||||||||||||||||||-|||||||||||||||||||||||||||||||||||||||||||
CCTCAACAATAAAAGGACTTCAGGGGGAATCACTATCCCTGAACTCAAGCAGTATTACAGAGCAATAGTG

ATAAAAACTGCATGGTATTGGTACAGAGACAAACAGATAGACCAGACAAACAGATAGAACAGAATTGAAG
|||||||||||||||||||||||||||||||-||||||||||||---------||-|||-||||||||||
ATAAAAACTGCATGGTATTGGTACAGAGACAGACAGATAGACCA---------ATGGAATAGAATTGAAG

ACCCAGAAATGAACCCACACACCTATGGGCACTTGATTTTTGACAAAGGAACCAAAACCATCCAATGGAA
||||||||||||||||||||||||||||-|||||||||||||||||||||-|||||||||||||||||||
ACCCAGAAATGAACCCACACACCTATGGTCACTTGATTTTTGACAAAGGAGCCAAAACCATCCAATGGAA

AAAAAGATAGAATTTTCAGCAAATGGTGCTGGTTCAACTGGAGGTCAACATGTAGAAGAATGCAGATCGA
||||-|||||-|||||||||||||||||||||||||||||||||-|||||||||||||||||||||||||
AAAA-GATAGCATTTTCAGCAAATGGTGCTGGTTCAACTGGAGGGCAACATGTAGAAGAATGCAGATCGA

TCCATGCTTATCACCCTGTACAAAGCTTAAGTCCAAGTGGATCAAGGACCTCCACATCAAACCAGATACA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||-|||
TCCATGCTTATCACCCTGTACAAAGCTTAAGTCCAAGTGGATCAAGGACCTCCACATCAAACCAGACACA

CTCAAACTAATAGAAGAAACACTAGGGCAGCATCTGGAACACATGGGCACTGGAAAAAAATTCCTGAACA
|||||||||||||||||||-|||||||-|||||||||||||||||||||||||||||||-||||||||||
CTCAAACTAATAGAAGAAAAACTAGGGAAGCATCTGGAACACATGGGCACTGGAAAAAATTTCCTGAACA

AAACACCAATGGCTTATTCTCTAAGATCAAGAATCGACAAATGGGATCTCATAAAACTGCAAAGCTTCTG
|||||||||||||||||-||||||||||||||||||||||||||||||||||||||||||||||||||||
AAACACCAATGGCTTATGCTCTAAGATCAAGAATCGACAAATGGGATCTCATAAAACTGCAAAGCTTCTG

TAAGGCAAAGGACACTGTGGTTAGGACAAAACAGCAACCAACAGATTGGGAAAAGATCTTTACCAATCCT
||||||||||||||||||||||||||||||||-|||||||||||||||||||||||||||||||||||||
TAAGGCAAAGGACACTGTGGTTAGGACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTACCAATCCT

ACAACAGATAGAGGGCTTATATCCAAAATATACAAAGAACTCAAGAAGTTAGACTGCAGGGAGACAAATA
||||||||||||||-|||||||||||||||||||||||||||||||||||||||-|||||||-|||||||
ACAACAGATAGAGGCCTTATATCCAAAATATACAAAGAACTCAAGAAGTTAGACCGCAGGGAAACAAATA

ACTCTATTAAAAATGGGGTTCAGAAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTG
||-||||||||||---------------------------------------------------------
ACCCTATTAAAAA---------------------------------------------------------

CTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATC
----------------------------------------------------------------------
----------------------------------------------------------------------

GTTGGTCCCGGCGCCTGCGCGGTTGTGAAAATAAAGGTTTTCTTTAGTAGTTTAAAAAAAAAATGGGGTT
--------------------------------------------------------------||||||||
--------------------------------------------------------------ATGGGGTT

CAGAGCTAAACAAAGAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATGTTCAAC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAGAGCTAAACAAAGAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATGTTCAAC

ATCTTTAGTCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACACCAGTGAGAATGGCT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATCTTTAGTCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACACCAGTGAGAATGGCT

AAGATTAAAAACTCAGGTGACAACAAATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTTTT
|||||-||||||||||||||||-||-|||||||-|||||||||||||||||||||||||||||||||-||
AAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT

GGTGGGACTGCAGACTGGTGAAACCATTCTGGAAATCAGTCTGGGTGTTCCTCAGAAAATTGGACATTGA
|||||||-|||||||||||-||||||||||||||||||||||||--||||||||||||||||||||||||
GGTGGGATTGCAGACTGGTAAAACCATTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAATTGGACATTGA

ACTGCCTGAGGATCCAGCTATACCTCTCTTGGGCATATACCCACAAGATGCCCCAACATATAAATGA--C
|||||||||||||||||||||||||||||||||||||||||||-||||||||-|||||||||||-||--|
ACTGCCTGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCTCAACATATAAAAGAGAC

ACGTGGTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTT
|||||-||||||||||||||-|||||||||||||||||||||||||||||||||||||||||||||||||
ACGTGCTCCACTATGTTCATCGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTT

CAACAGAGGAATGGATACAG--------GTACATCTACACAATATAGTACTACTCAACTATCAAAATCAG
||||||||||||||||||||--------|||||||||||||||--|-||-||||||-|||||||||-||-
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAA

TGACTGCATGAAATTCATGGGCAAATAGATGGGACTAGAAAATATCATACTGTGTGTATTAACCCAATCA
-||-|--|||||||||-|-|||||||-|-|||-|||-|||||||||||-|||-|||---|||||||||||
CGAGTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCATCCTGAGTGAGCTAACCCAATCA

CAGCAAAACACACATAGTATGCACTCACTGATAAGAGGATATTAGCCCAAAATCTTGAATTACCCAAGAT
|||-||-|||-||||-|||||||||||-|||||||-||-||||||||||||--||||||||||||-||||
CAGAAAGACATACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGAT

GCAATCCACAGACCACATGAAGCTCAAGAAGAAGGAAGACTAAAGTGTGGATGCTTCAGTCCTT-TTTAA
-----||--|||-||-|-|||-|||||||-|---||-||--|||-||||-||||||||-|||||-|||||
-----CCCTAGAACAAACGAAACTCAAGACG---GATGATCAAAATGTGAATGCTTCACTCCTTCTTTAA

AAGTGGAACAATCATATTCATAGGAGGGGTAATGGAGA--CAAAGTTTGGAGCAGAGCCTGAAGGAATGG
|-|-||||-||--|||--|-|-|-||||--||-|||||--|||||-||--|-|||||-|||||||||---
ATGAGGAAAAAGAATACCCTTGGCAGGG--AAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACAC

CCATTTAGAGGCTGTCCCTCCTGGGG---ATACA
|||||-||||-|||-|||-|-||-||---|||||
CCATTCAGAGCCTGCCCCACATGTGGCCCATACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.2.chr4	1977	2058	UVIR_DV	465	564	c	0.81	0.82	293

ATATGTGTGTTTGTATGTGTATGTATGTATATGTATATATATGTATATATATATGT-------------A
|||-|||-||||||||||||-||--||||-||-|||||+|-|||-|||||||-|||--------------
ATAAGTGAGTTTGTATGTGTTTGC-TGTAGATATATATRTTTGTTTATATATGTGTTTTGACAGGAGTTG

TATATATGTATAT------ATATATGTATAT
||-||||||||-|------||||||||||||
TAGATATGTATGTGAAAGTATATATGTATAT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	1577	1682	ERVB5_4-I_RN	3421	3526	d	0.91	0.91	811

AGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTGGCAAGCACAAGGCCCTGGGTTCAGTCCCCA
|||||||||||||||||||||||||||||||||||||||-|-||||-|||||||||||||||-|||||||
AGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCA

ACTCCGAAAAAAAGAAAAAGAAAAAAAAAGAAAGAA
-|||||-||||||-|||||-|||||||||-|-||||
GCTCCGGAAAAAAAAAAAAAAAAAAAAAAAAGAGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	1823	1952	ERVB5_4-I_RN	3418	3526	c	0.94	0.94	772

TTTTTTTTTTTTTCTTTTTTCTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTCGCTAGG
||-|-||||||||-||||||-||||||||||||||||||||||||||||||||||||||||||-------
TTCTCTTTTTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCT-------

CAAGCGCTCTAGCTCGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGCA
-------||-------||||||||||||||||||||||||||||||||||||||||-|||
-------TC-------CTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	927	969	ERVB5_4-I_RN	3422	3465	c	0.95	0.95	347

CTTCC-AGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCC
|||||-|||||||-||||||||||||||||||||||||||||||
CTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	1398	1444	GYPSY39-I_AG	4881	4928	c	0.83	0.83	230

TTTATTTAATTTTT-TCTGTTTTGGGGTTTTTTTTTGTTTTGTTTTGT
|||-||||||||||-|-|||-||-||-||||||||--|||||||||||
TTTGTTTAATTTTTCTATGTATTTGGATTTTTTTTCTTTTTGTTTTGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	1657	1799	B3A	60	198	c	0.69	0.69	410

TTATTTTTAATT-ATGTGCATGTGTTTACACAATGGGTATATGTTCTTGTGAGTGCTGGTGCCC-TGGAA
|||||||||-||-|||||-||||||-----------||-|-||--|-||||-||||--||||||---||-
TTATTTTTATTTTATGTGTATGTGT-----------GTGTGTGCGCGTGTGWGTGCGTGTGCCCACAGAG

GCCAGA----GGCATCAGATCCTCCTGGGATTGAAA--AGAAACAGTTATCAGCCACCCAACTTGGGTGC
||||||----|||-||-|||||-|||||---||-|---|-|--|-|||-|-||||-||--|--|||||||
GCCAGAAGAGGGCGTCGGATCC-CCTGGAGCTGGAGTTACAGGCGGTTGTGAGCCGCCTGATGTGGGTGC

TAGAGATGGAA
|-|--|--|||
TGGGAACCGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.3.chr10	2140	2190	MUSID3	3	52	d	0.76	0.76	233

GGCTGGGGATGCAGCTCCGTTGGTGAAGAGCCTGCCCAGTATACACAAAGC
|||||||||||-|||||-||-|||--||-||-||||-||-||-|||-|-||
GGCTGGGGATGTAGCTCAGT-GGTAGAGCGCTTGCCTAGCATGCACGAGGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.4.chrX	28	88	MUDR	564	619	d	0.80	0.80	245

CATTATCTTCAAGTTTTTAAAATATTGTTTGAAAACTGATAACAGTTTTGCAATTGCAAAA
||||-|||||||-|||-|||||||-||||-|||-||||-|--|||||||--|-|||-||-|
CATTGTCTTCAA-TTTCTAAAATAGTGTTGGAAGACTGCT--CAGTTTT--AGTTGTAAGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.4.chrX	1563	1611	GYPSY13-LTR_AG	154	204	d	0.80	0.80	236

GTAGAATAGAATAGAATAGAATAGAATAG--AATAGAATAGAATAGAATAG
||||-||||||||||||||-|||--||||--|||||-|-|-|-||-|||||
GTAGGATAGAATAGAATAGCATAAGATAGGAAATAGGAAATAGTAAAATAG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.4.chrX	1779	1872	HELITRON8_OS	7710	7808	c	0.71	0.71	240

GTTGTTTCTTAAGAAGAAATATAAAAGAAATAAT-CAAGTGTA--TTAAGAAATCAA----GTATTAGAC
|||-||-|-|-|--|||||---|||-||||-|-|---||||||--||||||||-||-----|-|-||---
GTTTTTCCATGAATAGAAA---AAAGGAAACAGTGTGAGTGTAATTTAAGAAAGCAGCGGCGCACTAAGA

ATCTATATTTGCA-AAAATGAAAGGGTAAAAA
||||||---||||-||||-||||-||||||||
ATCTATGCATGCATAAAAGGAAAAGGTAAAAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.5.chr1	150	272	SINEB1_MU	4	132	c	0.73	0.73	385

GAGACAGGGTCTCATTGTGTTCTCTTGATTGGCCTA----CAGCTTG---GCCAGTCTGGCCTTGAATTC
||||||||||-||--|||||---||||--||-|||-----||--|||----||||-|||||||-|||-||
GAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGACTCATTTTGTAGACCAGGCTGGCCTCGAACTC

ATAGTTCATAGAGAACCTCCTCCTGCCTCTC-----CTGAGATCAAAGGAATATGCTACCATACC
|-||-||-------||||-|--|||||||-|-----|||-|||-|||||-||-|||-||||-|||
AGAGATCC------ACCTGCCTCTGCCTCCCGAGTGCTGGGATGAAAGGCATGTGCCACCACACC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	910	953	SINEB1_MU	34	78	c	0.80	0.80	225

GGCTGGCATGGAACTT-GTGATCCTCCTGCCTTTGCCTTCCAAGT
|||||||-|-|||||--|-|||||-|||||||-|||||-||-|||
GGCTGGCCTCGAACTCAGAGATCCACCTGCCTCTGCCTCCCGAGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.5.chr1	876	920	L1-3_DR	2128	2171	c	0.80	0.80	222

TTTGTCTTCTAAATAGCTCTGTGTTCTTTCCATTCTCTTTCCCTC
|||||||||||-|-|-|||--|-|||||-|||||-||||||-|||
TTTGTCTTCTAGAAAACTCCTTTTTCTTCCCATT-TCTTTCTCTC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.1.gnl|ti|330798991	1139	1208	SZ-64	210	277	d	0.71	0.71	197

TCTCCTCCCTTTTT-----ACGCCGCCTCCTCCTCCTACTTCTCCTATACCTCAATTCTCTTCTTCTGAT
|||-|-||-||-||-----||-|-|-|||||||||||-------||-|-|-|||--||||-|--|||--|
TCTGCCCCTTTCTTCCTCGACTCTGTCTCCTCCTCCT-------CTGTTCTTCACCTCTCCTGCTCTAGT

TCTTC
|||||
TCTTC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	571	611	HARBINGER1_DR	2785	2826	c	0.90	0.90	284

TGTGTGTGTATGTGTG-TGTGTGTGTGTGTGTGTGTGTGTGT
||||||||||||||-|-|||-|||-|||||||||||||||||
TGTGTGTGTATGTGAGATGTATGTATGTGTGTGTGTGTGTGT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.6.chr6	711	880	RSINE2A	2	167	c	0.68	0.68	277

GCTGACTGGGGAGCTTCCTGTGACTCCTGTGTCTACCTCTCATGTTCC-----TGTAGGAA-----CACA
||||-|--|-|||||-|--|----||||||-|||-||||-|--||-|------|--|||-------|||-
GCTGGCCAGCGAGCTCCAGGATCTTCCTGTCTCTGCCTCCCCAGTGCTGGGATTACAGGCGTGTGCCACC

ACATCTAG---TTGTACATGGCTGCTCTGAGCTTTGGGGATTTGAGCTCAGTTGAAATTCGAGCTAAGCT
|-|-||-|---||-|||||||-||||---------||||||-|||-|||||-|-----||--|||-----
ATACCTGGCTATTTTACATGGGTGCT---------GGGGATCTGAACTCAGGTC---CTCATGCT-----

CTTGTACAGTGCG-GCTCTACCCACTGACCCACCTCCC-AGCCCC
--||-||||---|--||-||||||||||-|||-|||||-||||||
--TGCACAGCAAGCACTTTACCCACTGAGCCATCTCCCCAGCCCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.7.chr16	148	291	URR1	1	145	c	0.87	0.87	957

AGATATTTACATTGAAATTCATAACAGTAGCAAAATTATAGTTATGAAGTAGCAGT-AAGATAATTTTAT
|||||||||||||---||||||||||||||||||||||-|||||||||||||||---||-||||||||||
AGATATTTACATTACGATTCATAACAGTAGCAAAATTACAGTTATGAAGTAGCAACGAAAATAATTTTAT

GGTTGGGGATCACCACAACATGAGGAACTGTATTAAATGGTCAGGGCATTATAAAGGTTGAGAGCCACAG
||||||||-||||||||||||||||||||||||||||-||||---||||||--||||||||||-||||-|
GGTTGGGGGTCACCACAACATGAGGAACTGTATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACCACTG

ATCTA
--|||
CCCTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.7.chr16	1442	1560	SZ-67LTR	397	498	c	0.77	0.77	229

TTCTTTGTAATTTATGGTG--TTTTCTTATTCATA--GAATTTTCATAGTCTTTTAATAT-TTTACTAAG
||||||-||||--||-|||--|||||-||||-||---||------------|||||-|-|-|||-|||--
TTCTTTTTAATGAATAGTGACTTTTCCTATTTATCCCGA------------TTTTAGTGTATTTCCTA--

GTATAAATTTAATTCATCAATTGTAATTATTAAATTATTGCTGAAATGAAGTCT
-|||||||||-||||------|-|||||--||||||-||||--|||||||||-|
-TATAAATTTGATTC------TATAATTCCTAAATT-TTGCATAAATGAAGTTT

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.7.chr16	1684	1733	VANDAL1N1	334	381	d	0.84	0.84	210

TTATAATAAAGATTATATT-TGAGA-ATTTAAAATTACAATTGAGAGTAGAA
||||||||-||||||||||-|-|||-|||||-----|-||||||||-|||||
TTATAATAGAGATTATATTGTAAGATATTTA----CATAATTGAGATTAGAA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.7.chr16	1850	1950	RMER12	792	885	d	0.74	0.74	228

ATCCTCTAGATATGACCTAGAATGAATGTTTCTCTCCCTGAA-ATACATTTATTAATTAAAG-----TTC
|||||-|-||--|||||||||||||||||||-||--|-|||--|||-||||-|------|||-----|||
ATCCT-TGGACCTGACCTAGAATGAATGTTTTTC--CTTGANCATAAATTTGTC---CCAAGCCTATTTC

TTATAAACTTTAGCACATATATTTTAAAAGCTAATTG
|--|----|||||--||---|||-|-||||||-||||
TCTT----TTTAGTGCA---ATTATGAAAGCTCATTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.9.chr17	115	298	RSINE1	8	177	d	0.72	0.72	402

GATGAGATG-TTCTGCTGGAAAAGGTGCTTGCAGCTAAGCATAGTGACCTGAATCTGAGC---AGGACCT
|--||||||--||-|--||-|||||-||||||-||-||||-|--||||||||-|--||-|----|||||-
GGCGAGATGGCTCAGTGGGTAAAGGCGCTTGCCGCCAAGCCTGATGACCTGAGTTCGATCCCCGGGACCC

ACACAGTGGTAGGAGAGAA---ACATCTACAA-------AAGCGGTGCTCTGATCACTATTTGTACATCA
|||--||||-|||||||||---||-|||--||-------|||--||-||||||-|-|-|-----|||-|-
ACATGGTGGAAGGAGAGAACTGAC-TCTGAAATTCCCGCAAGTTGTCCTCTGACCTCCAC----ACA-CG

TGACATCTGTGGGCACTACATGTAGAATCACACACACACACACACACACACACACACA
-|----|-||||------------------|||-|-|-||||||||||||||||||||
CG----CCGTGG------------------CACGCGCGCACACACACACACACACACA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.9.chr17	328	660	ORR1A	11	325	c	0.85	0.86	1964

TCTTTAAGATAGAGTTTTACTGCTGTGAAGAGACAACATGATCAAGGCAAGTCTTATAA-GGACAACATT
||||--||-|||-||||||||||||||||-|||||-|||||-||||||||-||||||||-||||||||||
TCTT--AGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAAGGACAACATT

TAATTGAGGCTGGCTGACAGGTTCAGAAGCTCAGTCCATTATTATCAAGGTGGGAGCATAGCAGCTTCCA
||||||-||||||||-|||||||||||-|-||||||||||||-|||||||-||||||||-||||--||||
TAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCGGGAGCATGGCAGTATCCA

GGCAAGCATGGTGTAGGAAGTGCTCAGAGTTCTACATCTTGTTCAGAAGGCA---AACAGAAGTCTGACT
||||--|||||||-||||-|-|||-|||||||||||||||--||-|||||||---|--|||||-|||+||
GGCAGACATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCCGAAGGCAGCTAGNAGAAGACTGRCT

TCCAGGGAGGTAGGATAAGGGTCTTAAAGACCACAGCCACAATGACATACTACCTCCAACAAGGCCACAC
||||||-||-|||||--|||||||-||||-|||||-|||||-|||||-||+-||||||||||||||||||
TCCAGGCAGCTAGGAGGAGGGTCTCAAAGCCCACACCCACAGTGACACACYTCCTCCAACAAGGCCACAC

CTACCCCAACAAGGCCACACCTCCTAATAGTGCCACTCCCTGGGCCATGTATATTCA
||--------------------|||||||||||||||||||||||||-|-||||-||
CT--------------------CCTAATAGTGCCACTCCCTGGGCCAAGCATATWCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.9.chr17	1202	1228	CR1-5_SP	4148	4174	d	0.96	0.96	222

CTATTTATCTATCTATCTATCTATCTA
|-|||||||||||||||||||||||||
CCATTTATCTATCTATCTATCTATCTA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
rno.U11.9.chr17	1428	1547	ORR1D	32	141	c	0.70	0.71	317

AAATCTCAAGGCCTATTCCCAGGGGCCCACTTCCTCCA-CTGGGCCTCTGCCCAGTAAAGGCTCCACAAC
|||-|||||-|||-|--|||||-|-|-|||||||||||-|--||||-|-------------||||--|-|
AAACCTCAAAGCCCACCCCCAGTGACACACTTCCTCCAACAAGGCCAC-----------ACCTCCTAATC

CTTCTATAACAATGCCAACAACCCAGGACCAAGTGTCCAAGCACATGAGCC
||||---||||-|-|||-||||---||||||||-||-|||--|-+||||||
CTTCCCAAACAGTTCCACCAACTGGGGACCAAGCGTTCAAATATRTGAGCC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.1.gnl|ti|330798991	1019	1136	GYCUME1_LTR	544	660	d	0.73	0.73	377

ATTTTATTGCTCTTTTTCCCCCTCCTTCTCCTACTTCT------TATTTCTTCCTCATTCTCTTGCTCCT
|||||-||--||||||||-||||-||||-||-----|--------||-|||-|||---||--||-|||||
ATTTTCTTCTTCTTTTTCTCCCTTCTTCGCCCGTCGCCGCCAGCCATCTCTCCCT---TCGTTTTCTCCT

TCTCCTACTCATTCCTCTCCTCCTTCTTCTGCTACTTCTTCCTTTCTTCTCCCA
|||||--|||-|||-||||||-||-|||||-||-||||||||||-|--|-||||
TCTCC--CTCGTTC-TCTCCTTCT-CTTCTCCTTCTTCTTCCTTACAGCCCCCA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.7.gnl|ti|299077911	351	423	HERVIP10FH	791	860	d	0.81	0.81	343

GAGAGATCCACAGAGAG-AAAGAGTGAGTGTGTGTGTGAGAGAGAGAGAGAAAGAGAGAGAAAGATGAAA
||-|||-|--|||||||-||||||-||----|-|-|-|||||||||||||-||||||||||-|||-||||
GAAAGACCAGCAGAGAGGAAAGAGAGAA---GAGAGAGAGAGAGAGAGAGGAAGAGAGAGAGAGA-GAAA

GAGA
||||
GAGA

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.2.gnl|ti|252663728	715	829	HERVIP10FH	803	916	c	0.68	0.68	310

TCTTTTTCCCCCTCCTTCTCCT--ACTTCTTATTTTTC-CTCATTCTCTTGCTCCTTCTCCTACTCATTC
|||-|-|-||-|||--||||-|--|||-|-|-|||-||-|||--||||---|||--||||-|-|||--||
TCTCTCTGCCTCTCTCTCTCTTCGACTCCATCTTTGTCTCTCTCTCTCCCTCTCTCTCTCTTTCTCTCTC

-CTCTCCTCCCTTCTCTGCTACTTCTTGCTTTCTTCTCCCATTCTCCTC
-|||||-|||--|||||------|||--||-|||||||-|-|||--|||
TCTCTCTTCCTCTCTCT-----CTCTCTCTCTCTTCTCTCTTTCCTCTC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
spu.U11.8.gnl|ti|299077986	65	161	COPIA2-I_LC	5274	5375	c	0.74	0.74	240

AGAT--AGAGAGATCCACAGAGAGA--AAGAGTGAGTGTGTGTTGAGAGAGAGAGAGAAAGAGAGAGAAA
||||--|||||||||-|-|||||-|---||-||-||-|-||-||||-|---|||||||--|||||-||||
AGATGAAGAGAGATCGAGAGAGAAATCGAGGGTAAGCG-GTTTTGAAAAGCAGAGAGAGCGAGAGTGAAA

----GA--TGAAAGAGATGTATTGTGTATGTATTGTG
----||--||||-||||---|--||||-|||||-|||
ACCGGAAGTGAASGAGA---AC-GTGTGTGTATAGTG

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
tni.U11.1.chr21	1765	1939	MERMITEA	592	741	c	0.69	0.69	181

GCGGCACGCAGCCGCC-------GCGCTGCGAGCGCCGAGCTCCAGCCGTCTCCGGCAGCGACGCCGGCG
||-||-||||||-|||-------||||-|||-||||||-||---|||||-----|||-|||-||--|-||
GCCGCGCGCAGCTGCCAGGCGGGGCGCGGCG-GCGCCGGGC---AGCCG-----GGCGGCGGCG--GACG

ATGTCGGCCGGGCTCCCCGCGTCAACCCGACGCCCCGGCGGGAGCTGCAATGGCCTCCGCCGAGCACAAG
--||||-||||||-----------------||--|||-||||--|-||---||---|-||||-||-|---
GCGTCGACCGGGC-----------------CGGACCGTCGGGGACGGCGTAGGAGGCGGCCGGGCGCGGA

TGTGCCGAGCTGCGAGGGTTGCTCACGGGGGCGACGAGGCGC
-|-|-||----|||-|||--||||-||||-||--||||||||
GGAGGCG----GCGGGGGCGGCTCCCGGGCGCCGCGAGGCGC

Name	From	To	Name	From	To	Dir	Sim	Pos	Score
tni.U11.3.chr2	591	624	HERV15I	560	593	d	0.85	0.85	229

TGGTGTGTGTGTGTGTGTGCATGTGTGAATCTAA
||||||||||-||||||||-|||||-||--||||
TGGTGTGTGTATGTGTGTGAATGTGGGAGCCTAA

---

Masked Regions

>aga.U11.1.chr3L FRAGMENT 708 -> 653
TTTAAAAATTTTTGAAAAAAATCCTTTTGAATAAGAAAACAAAAAAGTAGAAGAGA
>aga.U11.2.chrU FRAGMENT 643 -> 607
AATCATATTTTTGTGTAATTTTGGGGATACATTTTAA
>aga.U11.2.chrU FRAGMENT 751 -> 644
TCAGAAAGAAGGCTTCATTAATAAAATTTAAATTGTATTTAAATTTAAAATTTATTATTAAAAATGTAAA
AAAAAATCCTTTTGAATAAGATAAAAAAAGTAGAAGAG
>aga.U11.3.chrM FRAGMENT 10 -> 171
AAATAATTTTATTTTTTATTAAATTTTAAATTTAATTTATAATTATTTAATATTAATAAGATTATTTTAT
TCTAGTTAAATATTTTATTATTATTTTATTTTACATGTAAATTTTTGTGTGAATTTTTATTAATTTTAAA
AATTAATAATTTTTAATTTATT
>aga.U11.3.chrM FRAGMENT 172 -> 229
CGCAGTAATTAATATTAATTATAAAAGAAATTTTGAATTAGTAATAATATATAGTATT
>aga.U11.3.chrM FRAGMENT 991 -> 910
AAATTATTTTTATTAATAATTATAAATAAAAAAAAATAATTAATAAATAATTATTATCAATTTAAATTGA
TTTGCACAAATT
>aga.U11.3.chrM FRAGMENT 1055 -> 992
AAATACTAATACACTATAATTAAAATTATTATTTCATTATAAATTACTAAAACTATAAAAAATA
>aga.U11.3.chrM FRAGMENT 1413 -> 1183
TTTAAGCTTATATTTATTTAAAAATTATAAAAAATATAAAATTTTATTTTAAAGCTCATCCCTTAAAATA
TTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAATAAGCTAAATTAAATTCATTTCT
TAAAAAACTAGATATATTTTAAAACGATTAACATTTCATTTCTAATTACATATTTAAAATAGTTATTCCA
CAATAACTTTTATATATAATT
>aga.U11.3.chrM FRAGMENT 1453 -> 1414
TAAAAAATAAATTATAACAAATTTATTAATAATAGCTATT
>aga.U11.3.chrM FRAGMENT 1560 -> 1454
AATTACTTTATATAAATTTATATACTAATTTTATCATAATTACTAAATTTTTATTATTAAAATTTAAATT
TTAATAAATAATTTAATTTAAATTAAATAATTTTTTA
>bta.U11.1.SCAFFOLD255372 FRAGMENT 6 -> 118
ACGGCAACCCACTCAAGTGTCCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGCGTGCCGCAGTCCA
TGGGGTCGCAGAGTCAGAAAAGACTGAAGCAACTTAGCACGCA
>bta.U11.1.SCAFFOLD255372 FRAGMENT 1775 -> 1862
GAATTTCTCTGGCAGTCCAATGTTTTATATGCAGAGCTGCCACTGTAGGGGGCGCAGGTGGTCCGGGAAC
TAGGATCCTGCACGCTGC
>bta.U11.1.SCAFFOLD255372 FRAGMENT 1971 -> 2168
CCCTGGAGGCCCAGACGTAAAGAATCTGCCTGCAATGCCGGAGACCTGGGTTCGACCCCCGGGTTGGGAA
GATGATCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAGAGGAG
CCTGGCGGGCTGCAGTTCATGGGTCTCAAAGAGTCGGATACGAGCCACTAAGCACACA
>bta.U11.2.SCAFFOLD291927 FRAGMENT 74 -> 286
TGACTCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAGGGCAGGAGGAGGAAGGGACAACAGAGGATG
AGATGGTTGGATGGCATCACTGACTCGATGGACATGAGTTTGGGTGGACTCCGGGAGTTGGTGATGGACA
GGGAAGCCTGGTGTATTGTGGTCCCTGGGGTTGCAAAGAGTTGGACACAACTGAGCGGCTGAACTGAACT
GAA
>bta.U11.2.SCAFFOLD291927 FRAGMENT 992 -> 385
CAGAATTGAAAGAGACATGTGTACCCCAGTGTTCATCACAGCACTGTTTATAATAGCCAGGACATGGAAG
CAACCTAGATGTCCATCAGCAGATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTTTTACT
CAGCCATTAAAAAGAATGCATTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGCCTATTATACAGAG
TGAAGTGAGCCAGAAAGAAAAACACCAATACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGT
AATAACTCTGTATGCGAGACAGCAAAAGAGACACAGATGTATAGAACAGTCTTTTGGACTCTGGGAGAGG
GAGAGGGTGGGATGATTTGGGAGAATGGCATTGAAACATGTATAATATCATACAAGAAACGAATCACCAG
TCCAGGTTCCATGCAGGATATAGGATGCTTGGGGCGGTGCACTGGGATGACCCAGAGGGATGACACGGGG
AGGGAGGTGGGAGTGGGGTTCAGGGTGGGGAACACATGTACACCTGTGGCGGATTCATGTTGATGTATGG
CAAAACCAATACAATATTGTAAAGTAATTAGCCTCTAATTAAAATAAA
>bta.U11.2.SCAFFOLD291927 FRAGMENT 1643 -> 1443
AAAGACTCTGACGCTGGGAGGGATTGGAGGCAGGAGGAGAAGGGGACGACAGAGGATGAGACGGCTGGAT
GGCATCACCGACTCGCTGGACATGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCAGGC
GTGCTGCGATTCACGGGGTCACGAAAAATCGGACTCAACTGAGCGACTGAGCTGAACTGAA
>bta.U11.3.SCAFFOLD275400 FRAGMENT 360 -> 412
CCACCGGAATCGTAGATTCAAATCAAGGTCTCATTTCTTCTCCCACAGTGCAG
>bta.U11.3.SCAFFOLD275400 FRAGMENT 531 -> 568
CCACAAGTGGATATATTTACCCTAAGCTCTGTTGCTGT
>bta.U11.3.SCAFFOLD275400 FRAGMENT 854 -> 573
AAATCAACCCTGAGTACTTGTTGGAAGGACTGATGCTGAAGTTGAAATTCCAGTATTTCGGTCATCTGAA
GCAAACAGCTGACTCATTGGAAAAGTCCCTGATGCTGGGAAAGATTGAGGGCAGAGGGAGAAGAGGACAT
CTGAGGATAAGATGGTTAGACACATCAATGATGCAATGAACTTCAACTTGGGCAAACTTCGGGAGATAAT
GAGGGAGAGAGAGGCCTGGCCTGCTGTAGTCCATGGGGTTGCAAAGAGTCAAACATGACTGGGCGACTGA
AC
>bta.U11.3.SCAFFOLD275400 FRAGMENT 1566 -> 1788
GGTTAAAGAGCACCAACCTTAGAACTGAGCCAATTGTGTTTCCCAGCTCCACTGTATAAAAAGAGTAGAA
ACTTGGACAATTTTATTTAATCCTCACTTGTATTTCCTCATACATAAAATGGAGATGATAGTAGTACTTA
CCTTACAGAGTCATTGTGACACTTAAAGGTATATGTAAGACTTTGAACAAACTCTGGAATATTAGGCACA
CAAATGTTACTTA
>bta.U11.3.SCAFFOLD275400 FRAGMENT 1979 -> 1833
CCATGAGTCAGGAAGATCCCCTGGAGCAAGAAATGACAAGCCAATCCAGTTTTCTTACCTGGGGAATCCC
ATGGACAAAGGAGCCTGGTGGGCTACAGTGCATGGGGTCACAAAGAATCTGACATGACTGAGTCGACTTA
GCACACA
>bta.U11.4.SCAFFOLD306532 FRAGMENT 1233 -> 831
AGAAGACATAGGAACCAAATACAATTTATGGATTTTGTTTGAATTCTGATTCAAACAATCTCACAGTGAA
AAAATGGTTTTGAGATAATCAGGCCAATCTGAGTATGAAATATTGGTGTGAAATAGTGCTTCATTTTAAT
TTTAGATGTGTTAATGACATGATGAATGTGTAAAAAGAAAGTGTATGTTAGCAGTGCATGATAATGTATT
TAGAGGTGAAATGGCATAATGCCTGGCATTTTGCCCTGAAAAAAAATCCCCAAAACCATAAATGAAAGTG
GGGAGATTAGTGAAACAAAACTGTTTATAAGCTGGCAATTGCTGAAGATGAATATTAAGTAAAAGGGATT
TATTTTACCATAATATCAGCTTTTGGTATGTTTGAAATTGTCCATATTAAGAA
>bta.U11.4.SCAFFOLD306532 FRAGMENT 1332 -> 1537
TCTTCCTCGGTAGCTCAGCTGATAAAGAATTTGCTGGCAATGAGGGAGACCCTGGTTTGATTTCTGGGTT
GGGAAGATCCCCTGGGGAAGGGATAGGCTACCCACTCCAGTATTCTTGAGCTTCCCTGGTGGCTCAGATG
GTAAAGAATCCACCTACAATGCAGGAGACCTGGGTTCAATCCCTGGGTTCAGAAGATCCCCTGGAG
>bta.U11.5.SCAFFOLD275400 FRAGMENT 318 -> 370
CCACCGGAATCGTAGATTCAAATCAAGGTCTCATTTCTTCTCCCACAGTGCAG
>bta.U11.5.SCAFFOLD275400 FRAGMENT 489 -> 526
CCACAAGTGGATATATTTACCCTAAGCTCTGTTGCTGT
>bta.U11.5.SCAFFOLD275400 FRAGMENT 812 -> 531
AAATCAACCCTGAGTACTTGTTGGAAGGACTGATGCTGAAGTTGAAATTCCAGTATTTCGGTCATCTGAA
GCAAACAGCTGACTCATTGGAAAAGTCCCTGATGCTGGGAAAGATTGAGGGCAGAGGGAGAAGAGGACAT
CTGAGGATAAGATGGTTAGACACATCAATGATGCAATGAACTTCAACTTGGGCAAACTTCGGGAGATAAT
GAGGGAGAGAGAGGCCTGGCCTGCTGTAGTCCATGGGGTTGCAAAGAGTCAAACATGACTGGGCGACTGA
AC
>bta.U11.5.SCAFFOLD275400 FRAGMENT 1524 -> 1746
GGTTAAAGAGCACCAACCTTAGAACTGAGCCAATTGTGTTTCCCAGCTCCACTGTATAAAAAGAGTAGAA
ACTTGGACAATTTTATTTAATCCTCACTTGTATTTCCTCATACATAAAATGGAGATGATAGTAGTACTTA
CCTTACAGAGTCATTGTGACACTTAAAGGTATATGTAAGACTTTGAACAAACTCTGGAATATTAGGCACA
CAAATGTTACTTA
>bta.U11.5.SCAFFOLD275400 FRAGMENT 1937 -> 1791
CCATGAGTCAGGAAGATCCCCTGGAGCAAGAAATGACAAGCCAATCCAGTTTTCTTACCTGGGGAATCCC
ATGGACAAAGGAGCCTGGTGGGCTACAGTGCATGGGGTCACAAAGAATCTGACATGACTGAGTCGACTTA
GCACACA
>cfa.U11.1.chr2 FRAGMENT 131 -> 1
GGGCAGCCCGGGTGGCTCAGCGGTTTAGTGCCGCCTTCAGCCCAAGGCCTGATTGTGGAGACCTGGGATC
CAGTCCCATGTCAGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTC
>cfa.U11.1.chr2 FRAGMENT 157 -> 314
AGGGGCGCACCTGGGTGGCTTAGTGGGTTAAATGTCTGCCGTCAGCTCAGGTTATGATTTCAGGGTCCTG
GGATCCAGCCCCGCATCCCTGCTGAGCAGGGAGCCGGCTTCTCCCTCTCCTCCCCGTTCTGCTCTCTCTC
GCTCTCTGTCTCTCAAAT
>cfa.U11.1.chr2 FRAGMENT 1743 -> 1944
GGGATCCCCGGCTGGCTCAGCAGTTTAGCGCCTGCCTTTGGCCCAAGGCGCGATCCTGGAGTCCCCGGAT
CGAGTCCCACGTCGGGCTCCCCACGTCGGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTC
CGCCTCTCTCTCTATCATGAATATATAAATAAATCTTCAAACAAACAAACAAACAAAAAAAA
>cfa.U11.1.chr2 FRAGMENT 2074 -> 2200
GAGCACTTGGGTGGCTCAGCCGCTTGGGTGGGTGACAATCTGCCTTTGGCTCAGGTTGTGATCCTGGGGT
CCTTGGATTGAGTCCCGCATCCAGCTCCCTGCAGGGAGCCTGCTTCTCTCTTTGCCT
>cfa.U11.2.chr30 FRAGMENT 398 -> 574
GAAATAGGCACTCACACACTCTTGGTGGGCATGTAAATTGGGCACCCCTCCTGAAAAAAAATTTAGCCAT
CAAGGTTTAAAATATATTTGCCTTCTGATCACTCCTAGGAATTTGGACTTGTAAAAGTATCCCAAAGCAA
ATATACAAAGATGTCCACTGCATTAGGGTTTATTTAT
>cfa.U11.2.chr30 FRAGMENT 755 -> 656
AGGGGTGTCTGGGTAGCTCAGTTGTTTAAATATCTGACTTCAGCCCAGGTCTTGACCTCAGGGTTATGAC
TTCAAGCCCCATGACTTGGAGTTCCATGCT
>cfa.U11.2.chr30 FRAGMENT 1112 -> 1281
AGATCTTCAAGTCCTCATCTCAAGCAAAAAAAAAAATTGTAATTATATATGGTGACAGATGCTAACTAGA
CTTCTTGTGGTGATGGTTTTGCAATATATACAAATACCAAATCATTATGTTGTACCCCAGAAACCAAGAC
AATATTGTTATATCAATTATACCTCAAAAA
>cfa.U11.2.chr30 FRAGMENT 1602 -> 1424
AGAGGCACCTGGGTGGTGTAGTCTGTTAGGCATCCAACTCTTGGTTTTGGCTCAAGTCTGAGCCCTGCAT
CGGGCTTCATGCTCAGCAGGGAACTTGCTTAAGTTTCTTTCTCCCTTTCCCTCTGCCCCCACCCCGCTCT
CTCTCTAAAATAAATAAATCAATCTTAAAAAAAAAAGAA
>cfa.U11.2.chr30 FRAGMENT 1789 -> 1633
GGGTGCCTGGGTGGCTCAGTGGTTGAGCGTCTGCCTTTGGCTCAGGTCGTGATCCCAGAATCCTGGGATC
AAGTCCCACATCAGGCTCCCAGAAGGGAGCCTACTTCTCCCTCTGCCTGTGTCTCTGCCTCTATCTCTGT
GTCTCTCATGAATAAAT
>cfa.U11.2.chr30 FRAGMENT 1956 -> 1890
GGGGTGCCTGGCTGGCTCAGTTGGTGGAGCATGTGACTCTTGATCTCGGGGTTATGAGTTCAAGCCC
>cfa.U11.2.chr30 FRAGMENT 2122 -> 2060
TACTAACATAAGAAATAAAACTTTTTTCTTTTTAAATTAGAAATACAAGATAAAAACTAAACC
>cfa.U11.3.chrX FRAGMENT 28 -> 960
TCAGTAAAATCGCAGGACACAAAATCAACATAAAGAAATCTGTTGCATTTCCATATACCAATAATGAAGC
AACAGAGAGAGAAATCAAGGAATCAATCCCATTTACAATCACACCAAAAGCCATGATACCTAGGAATAAA
CTTAACTGTAGAGGTAAAGGACCTGTTTTCTGAAAATTATAAAACATTGATGAAAGAAATTGAAGATGAC
ACAAAGAAATGGAAAAAGATTCCATGCTCATGGATTGGAAGAACAAATATCATTAGAATGTCTCTATTAC
CCAAAGCAACCTACACATTTAATGCAATCCCTATCAAAATACCACCAGTATTTTTCACAGAGCTAGAACA
AACCATCCTAAAATTTGTATGGACCCACAAAAGACCCTGAATAGCCAAAGCAACCTTGAAAAAGCAAAGC
AAAGCTGGAGGCATTAAAATTCTAGACTTCATGGTATATTACAAAGCTGTAGTGAATAAAACAGTATGGT
ACTGGCACAAAAATAGACACATACATCAGTGGAATAGAACAGAAAACCCAGGAATGAATCCACAACTATA
TGGTCAGGGAAGAACATCCAATGGAAAAAAGACAGTCTCTTCAACAAATGATGTTGTGAAAACTGGACAG
CCGCATGCAAAACAATGGAACTGGACCACCTGCTTACATCAGACACAAAAATAAATTCAAAACGGATGAA
AAACATAAATGTGAGATAAGAAACTATTAAAATCCTAGAAGAGAACTCAGGCAGTAAGCTCTTTGATATT
TGCCACAGCAACTTCTTGCTAGATATATCTCCTAAGGCAAGGGAACCAAAAGCAAAAATGAACTATTGGG
ACTTCATTAAAAAAAAAAAAAACTTCTTCACAGTGAAGGAAACAATCAACAAAACTAAAAAGCAGCCTAC
AGAATGGGAAACGATATTTGCAA
>cfa.U11.3.chrX FRAGMENT 1134 -> 1320
AAAATACAGATTTAGAGATACATGCACCCCAATGTTTATAGCAGCATTACTAACATTAGCCAAACTATGG
AGAAAGCCCAAGTATCCATCAACTGATGAATGGATAAAGAAGAAGTGGTATATATAATGGAATATTACTC
AGCCATCAAAAAGATGAAACCTTGGCATTTCTAATGACACGGATGGA
>cfa.U11.3.chrX FRAGMENT 1366 -> 1537
GGGATCCCTGGGTGGCTCAGTGGTTTAGCACCTGCCTTCGGCCCAGGGCGTGATTCTGGAGTCCTGGAAT
CGAGTCCTACATCAGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTATCTCTGCCTCTCTCTCTC
TCTCTCTCTCTGTGTCTCTCATGAATAAATAA
>cfa.U11.3.chrX FRAGMENT 1548 -> 1787
AAAAAAAAGAAAAAAAAGGAGAGAGGGAAACAAGTCATAAGAGACTCCTAAAGATAGAGAACAAACTGAG
GGTTGATGGAAGGAGGTGGGTGGGGAATGGGAAAGATGGGTGACGAGTATTAAGGAGGGTACCCATTATG
ATGAACACTATGTGTTGTATGTAAGGGATGAATCACTGAATTCTACTCCAGAAATCAATATTGCGCACTG
TATGCTAACTACCTAAAATTTAAATTAAAA
>cfa.U11.3.chrX FRAGMENT 1893 -> 1954
TAACAAAGCCTATAGGCAAGAAAAGAAATAAATAGGGAATCTATTGCAATATGTAAGATAAC
>cfa.U11.4.chr37 FRAGMENT 4 -> 116
TGGGCTGAGGTGAAAGGTGTCACCTTGGGGCCGAAGCATTTAAGAGGTGGTATAGGAGTCTCCAGGGCTC
TCTTCCTTTGACACTTGCCCAGAAAGGCCTTCTGTTACAGATG
>cfa.U11.4.chr37 FRAGMENT 206 -> 330
AGCAAGGCCCCTGTCAATCCATGTTGGACACATAGCATTAGAAAGAAATCATCTTTTGTTAAGTCACTGA
GGATTCAGGGTTAGCTCATTTGTACAGCATAATCTGACTGACACTGACTCATACA
>cfa.U11.4.chr37 FRAGMENT 702 -> 640
TCCAATCCTTTGAATCAGGGTTCTAGAAATTATATAAAGCACTTCAAATTTCAGGCTAAATAA
>cfa.U11.4.chr37 FRAGMENT 1323 -> 1371
TTCTTTTCTTTTCCTTTCTTTTCTTTTTTTTTCCTTTTCTTTCTTTCTT
>cfa.U11.4.chr37 FRAGMENT 1509 -> 1602
GACTGAGACACAAGACACTTAAGGTCCAGCCTTGGCTGCCTCCAACTAGCTGTATGGCATCACCACCCTG
AACCTTAGTTTTTTATCTATAAAA
>cfa.U11.4.chr37 FRAGMENT 1818 -> 1879
TACTCAAAGGGTGGTCCAGAGATGCTGGCAAACTATTTGTTACTGGTCTATGGCACGATAAG
>cfa.U11.4.chr37 FRAGMENT 2003 -> 1926
CTAGATAAGAAGCTTCCTGTAGAATGTAAATCAATGTCCTGCATCCTTCACTGAGAAAATCTTGTTGTCA
AAAAAAAT
>cfa.U11.5.chr17 FRAGMENT 1705 -> 1276
ACTAACAACTATTCAAGAACAAAACATCACTGTGAGAATCCTAGAATGTAGGTTTTAAGTGCCACTCCCA
CCCCTTGCACTAGAGACCAAGACAAACTGCATAAGAAAAGAGAAGCAGCTACACTTTGACTGTATTGCCT
CTCCCCCAAGCCAGTGCAGCACCACACAGAGCCTAAGCCTCCAGTTCCTCCAGTTGGAAAAGGGAGCCCC
TGGGGAACAACCAGCACCACTCCTACTTCATGGGAGCCTCTACTCTGATCTCATATCACAAGGATTGCTG
GGGAATGTGTGGGGCTCCACCACTGAGAATCAGTGGTGGAAAAGTGGGGAAGGGCTTGTGGCAATTAGCA
CATGTATCTTGGCAGACAGAGTTCCTACCTGTAGTGCCCAAGTATTAATCCCAACCGGAGGTTTTGCTCA
ACTGCAGAAC
>cfa.U11.5.chr17 FRAGMENT 1776 -> 1821
TCACTCCTGCTCTAAACATTTTTAAACTAATAATATCATTTTGTTA
>cfa.U11.7.chr22 FRAGMENT 1300 -> 316
AAGAATCTGTTGATGTAATTCATCACTCTAAGAGGTGAAACTAGAAAACTTCGTGCTCATCTCATAAAAA
CATGATAAAATCCACACCCATTCTTTATAAAAACTCAAAGCAGAGAGTAGAAGGAAACTTCTTCACCCTG
ATGAAAGGTACCTACAAAACCCTGCTACCAGCATCCTAATGGTAAAACATTATAAAGCTTTTCTTAAAAA
TTATGCATCATGCATATTATTTCCACTGCCATTCAACACTGTACTATAGATCCTAATCAGTGCAGTAAGG
CAAGAAAAAAATCTATAAGCATTGAAATGAAAGAATCAAAATTTAATATGTGCAATTATAATGATTTCTT
GCAAAGAAAAAAGCAACATTTCTACTTTAAAATGATCAAAACTACCAAGGGACCTGGATAGAAAAATCAA
TATATAAAAATTAATTTCATTCCTATACCTCAAAAGAAAGAACTAAGAGATGGAATATTTTACAAATCAC
CATTTATAAAAGAAAAAGGAAATTTCCTAGGATAAGTATAATTAAAAGTATGTAATATTTTTATGGATAA
GATTATAAAACTTTTTTTGAACGTTATTTTAAAAAGGCCTAAACCAGTAGACAAATCTATCATATTAACG
ATAAGGAGACTCAGGAGAATACCAATTCTCCCAAATTATTGCTTTATAATAATACTAATCAAAACCTAAA
CCTTTTTCATGGAACATGACAAGCTGATTTTTAAAATTTATTTGGTAAAAATATACAAAATGAATAAAAA
TAAATAAATAAAAATAAAATTTATTTGGAAAAGCAAAATGTCAATACAAGAAAATCTCTAAAAAGAACTA
GACAAGGGAGAGGGGAAGCACGAGCTTGTCCTGTAGGCTGTTAGGATTTAATAGGAATCTACAATCCCAC
AAATGAATGGTATCAGCCTAAGGATAGACAAGTAAATCCAAGGAACATAAAAGAGATCCAAGAAATAGAC
CACAC
>cfa.U11.7.chr22 FRAGMENT 1837 -> 1996
GGACGCCTGGGTGGCTCAGGGGTTGAGTGTCTGCCTTAGGCTCAGGTCATGATCCCAGGGTCCTGGGATC
AAGTTCTGAATCAGGCTTCCTGCAGTGGAGCCTGCTTCTTGCTCTGCCTGTGTCTCTGCCTCTCTCTCTC
TGTCTCTCATGAGTAAATAA
>cfa.U11.7.chr22 FRAGMENT 2035 -> 2200
GAGGTGCCTGGCTGGCTCAGTTGGTTGTGTCTGACTTGATTTTTGAGAGCCAAGATTTTTGGCTCTCAGG
GTTGTAGGATCGATCCCCTGTATTGGGTTCCACACTGGGCATGGAGCCTGCTTGAGATTCTCTTTCTCCC
TCTCCCACTCATTCTCTCTCTCTAAA
>cfa.U11.8.chr8 FRAGMENT 414 -> 506
GGGTTCAGATTCCATCTCTTCCACTAACCAGCTCTGTGATCTTGGCCAAGTGATGGTTGCTTTCCCAGCC
TCAGGTCCTCATCTCCAAGATGA
>cfa.U11.8.chr8 FRAGMENT 1330 -> 1527
GGGGTGCCTGGGTGGCTCAGTGGATTAAGTATCTGCCTTTGGCTCAGGTCATGATCCCAGGGTCCTGAGA
TTGAGGCCTATATCAGGATTCCTGCTCAGCTGGGAGCCTGCTTCTCCCTCTCCCTCTGCTCAAGCTCATG
TTCATACTCATGCTCTGATTCTCTCTCGAATAAATAAATAAAATATTCTTTAAAAAGA
>cfa.U11.8.chr8 FRAGMENT 1703 -> 1542
TTGAAAGCATGTGGGGTCTGCTGTCAAATATCCCTGAATCCAAAGCTCTATCCCAGCCCTTTTTAGTTGT
GTGACCTTGAACTAATGATTTAACGTTTGTGAGCCTCCTACTCCTCACCTGTAATGCATAGGTGGTAACT
ACTTTATTTGGTTGTTGTGGGG
>csa.U11.1.paired_scaffold_106 FRAGMENT 2058 -> 2149
CCGGTCAGTCTGGCGGTTAAGTGTGTCGCATTTCGAAAGGTTGCGGGTGAGAAACTGGTCGCTAGCTAGT
CGGTTGTGTCCTTGGACAAAAC
>dan.U11.1.2448814 FRAGMENT 885 -> 957
CCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCTGTC
GGT
>dps.U11.2.Contig6654_Contig5965 FRAGMENT 72 -> 170
CTGCTGTTGCTGTGTTGTTGGTTGACGCCGCTGCTGCTGCTGCTGACGCTGCTCCCGTCACCGCCGACAC
CACCACGGACGATGATGATGATGACGATG
>dps.U11.2.Contig6654_Contig5965 FRAGMENT 251 -> 192
CCGCAGCGGCGGCGGCAGCGGTGGCAGCTGGCGCTGCCTTGGCGGTGGCCACAGCAGCAG
>dps.U11.2.Contig6654_Contig5965 FRAGMENT 1390 -> 1450
GTGTATCCGAGAGTGTGGTGCGGGCGGGGTGGGGCGGGGTGGGGTGGGGTGGGAGGTGATG
>dps.U11.2.Contig6654_Contig5965 FRAGMENT 2157 -> 2199
CTCTGCCACGGCCACCGCCACCGCCACTGCCTCTGCTGTGGCC
>dps.U11.4.Contig1828_Contig8101 FRAGMENT 1074 -> 1029
TGCATGGATGAATGGGTGGATGGATGGGTGAATGGATGTATGGATG
>dps.U11.4.Contig1828_Contig8101 FRAGMENT 1526 -> 1605
AAAGCCAAAAGAAAACCAAGCTGGCGGAAATACTAGTAGAAAACAAATAAAAACGAACAGGAAATAACTA
AAATTAAGAT
>dps.U11.5.Contig2645_Contig5905 FRAGMENT 520 -> 1026
GATAAAGAATGGAGACAATAAAGACAAGTTTATCAGGCGTCGAACTGACGAAGTAAGAAAAATTAAAGAA
ATTAAATGGGGACACGTTAGAACTGAAGACATTCCATCAGATGTAGGATCAAGGGGCATTAGTGCAGGTA
AGCTACAAGATTTTAAGATTTGGTGGATAGGGCCTCAATGGTTGGCGAAATCTAAGGAACACTGGCCAAA
AGAGGAAATTGAAGAAAAATTAGTTGTTGGCACAACAATTGTAATAGCAAAAAATAACATTTTGTATGAA
TTATTACAAAAATATTCGTGTATACATAAACTAGAAAGAGTCATTGTATATGTATTGAAGTTTATTCAAA
TCAAAACCAAAAAGAAAGAATTTCCTCCATTTTTGACAGTGAAGGAGATTAAGAGCGCCAAAGTATTAAC
AGTAAAACAACAACAAGCTATCCAATTCAGTTCCGAAATAGCTATCCTAATTAATAAAAAGAAAGTAGAA
ACAAAAAATAAATTATT
>dps.U11.5.Contig2645_Contig5905 FRAGMENT 1035 -> 1167
ATAAAGAAACATTGCACGGTGGAATTAATCTGATGCGAAACTATATCCAGCGAAAATTTTGGTATTTGGG
CTACGAAATTTCTTAAAGAAAAAACTTTAAGAGTTTGTCACCTGTGCTAGGTGTAGACAAAAT
>dps.U11.5.Contig2645_Contig5905 FRAGMENT 1174 -> 2045
CCCGTTTCCAAATACAGGAAACGCCGGGCCTTACTATATCCGATGCTCTCAAAACCGGGGCAGCAATCCT
ATAAGTGATATATTGCCGTATTCGTGAGCATGGCGACAAAAGCTATTCATTTGGAAGTAGTCACCGAAGT
TACTTCAGATGCATTTCTGGCTTCACCTAGAAGATTTTCTCAAGAAGAGGAAAATGTGCAAAAATCTTTT
CAGGTAATGAACCAACTTTGTGGGAGCTTCGCGCAAATTAAAAGTCGAATATCAAAGAGCCCTTAAGAAA
AACATAAAAGTGGTGCCAATATTAGAAAGAGAACAGATCGAGTGGCACTTCATTTCCCCGGCAGGACCTC
ATTTCGGAAGTATTTGGGAAGCTGGGGTAAAATCAGTGAAATATCACTTGAAAAGAGTAATTGGGGACAA
TAATTTAACCTATGAGGAAATGTCCACTCCATTATGTCAAATGGAAGCGGTATTAAATTCACGCCCTTTG
CAGCTACAAATGATATTGACGATCTGGATGTATTAACACCAGTTAATTTTATTATTGGAATGCCAATATT
TGGCCCGATTAAGACAATTTGTGGAGACTAATTCAGAAAATGAAAAGAGAATTTTGGATTAAACGGAAAG
AAGATTATTTGCACACACTGCAACAAAGAAATAAATGGAAAATAGGAACGCAGAATATTAAAAAGGGACA
GATTGTATTAATAAAAAAAAGAAAACTGTCACCCAGCTATATGGTCCTTTGGAAAAATAGAAGAAATACA
TAAAGGTAAGGACGATAGAGTCAGAGTAGTAACTATAAAACATCAAGACGGGTTGATAAAACGACCTATA
ACTAAAATTTTTCCATTAGCTGGAATTGAGTC
>dps.U11.5.Contig2645_Contig5905 FRAGMENT 2062 -> 2200
TTGGAAGGAAATATGAAAAATTTATTAGAAAACCAACATAACTTAGATGATTCAATTAAGAAACAAACAT
CCGTGGTAAAGTCAACGGTAAATATCCTCATAAGAGCTACCGAGGAAATAAATGTGAACTTTAGAAGTA
>dps.U11.6.Contig3838_Contig6523 FRAGMENT 303 -> 466
CCGCTGCCGCCGCCACTGCCGCCGCCGCCGCTGCTGCCGCTTGCCGCTTCCGCCATGCCCCTTGCCCTCG
TTCGGGTTGTCGGCTTGTCGGCCAGCACGGAAATCATTTGATTCCATGCCCCCACCGGCCGTCCCCCATT
CCGTGTCGTGCCTCGTCCTCGCCG
>dps.U11.6.Contig3838_Contig6523 FRAGMENT 1374 -> 1147
AAAATATATACCAACAAATTTACAAAATTTACACGAATAAAAAATACATTAAAAATTAAATAGCAAACTT
AAAATATAACAAGAAATATTCTAAAGTAACAAAAAATATATACAAAAATACTAAAAATTCTGAAAAAGAA
AATACAAGAAAAATTATACTAAAAATACTTAAGAAGAAAATTCAAGAAAAAATACTACACATAAAACAAT
TTTTGAAAAATAGCAAAA
>dps.U11.6.Contig3838_Contig6523 FRAGMENT 1409 -> 1375
ATATTAAATATTTAAGAGTAATACAAAAAATACTG
>dps.U11.6.Contig3838_Contig6523 FRAGMENT 1777 -> 1724
CCCAGCCACAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAACCCCAGCCTCGAC
>dps.U11.6.Contig3838_Contig6523 FRAGMENT 1934 -> 1884
TTGGTGTATGTGTGTATGTGTGTGTGTGTTTTGTGTGCGTGTGCGTGTGTG
>dps.U11.7.Contig5305_Contig6323 FRAGMENT 2 -> 159
ACCTTAAACCCTGAACTATCGCTTAAATAAATAGCATGCAATATTTATAATCACCTCAATTTAACTAACT
TTTAACTTCTCTTTTTTCCTCCTTTTGTAATTAAGTACCATTATTAACAGATAATTGTTAATTTAATAAA
ATAATAAAAATAAATAAA
>dps.U11.7.Contig5305_Contig6323 FRAGMENT 160 -> 345
ATAAGCTGGGCAATAAACAGCTTCAACCCGTTCAAATCCCCAGGCCCAAGTCCCCAATTCAGAAGGCCGT
GGAAACGGCCATCAACTGGCTTCAAGGTATCTTCAGACAGAAACTGGCTGTAGGCACAATCACGCGAGCT
TGGCTTAAGGCAAAGATAGTCTTCATCGCCAAAGCAGGGGAAATCC
>dps.U11.7.Contig5305_Contig6323 FRAGMENT 2156 -> 1996
ATGCATTATTAAAATAAGAGCGGTGCCACACCCATTTTTTTTTCTTAAATCCACTTATTGATTATATATG
TATATCCAATACCAAAAACTAAATAAAAAATCTTGCTCCGTTCGGGAGTTATTTATTTTGGCCATCAAAA
GTGGTCGCTCGGACCATAGTG
>dre.U11.1.chrUn FRAGMENT 3 -> 123
TTTTTACTCCTACTTTGAGTAATGTTTACAACAGGTACTTTTACTCTACTCACACTAAATATTTAGGCAA
GTAATGGTACTTTTACTTAAGTATGCTTTTTCAGTACTCTTTCCACCACTG
>dre.U11.1.chrUn FRAGMENT 1521 -> 1260
ATTAGCCCCCCTGTATATTTTTTTCTCCAATTTCTGTTAAACGGAGAGATTTTTTTCAACACATTTCTAA
ACATAAAAGTTTTAAAAACTCATTTCTTATAACTGATTCATTTTATCTTTGCCATGATGACAGTAAAAAA
TATGTTAGATATTTTTCAAAACACTTCTATACAGCTTAAAGTGATATTTAAAGGCTTAACTAGGTTAATT
AGGATAATTAAACAGGTTTGGGTAAATAGGCAAGTTTATAATAATAATTTAT
>dre.U11.1.chrUn FRAGMENT 1563 -> 1692
TTTATATTTCCCCCTATGTACTGTTTAACATAATGTTCTACACATTTCTAAACTTAATAGTTTTAATTTC
TAATAACTGATTTCTTTAATCTTTGCCACGATGAGAGTACATAACATTTTTCAAGATACT
>dre.U11.1.chrUn FRAGMENT 1991 -> 1835
TGACTTTAATAATTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCTGCTGCGTAAAATCTTGCTGGATA
TATTGGCGGTTCGTTCGGCTGTGGCGACCCCAGATTAACAAAGGGACTAAGCTGACAAGAAAATGAATAA
ATGAATGACTTTAATAA
>dre.U11.1.chrUn FRAGMENT 1992 -> 2129
AAATAAAACAAATTAAACTCTCTAGAAAAAAAAAAAAAACATACATATATAATCGAAGATACTGAGAAAA
TTCCCTTGTTCTATTGAAAATCACTTATCAATATTTTAAAGGAGGGCTAATTTTACCCTCAACTGTAT
>dre.U11.2.chr19 FRAGMENT 304 -> 108
TTTCCACCCACCTATTTTAATGCTCATTTTGGATCTGCGCATGAAAATGATTGATGGAAACGTCATGATT
CACCTAACTTTTGAAAATATGCATGATAAAATGTGCATAACTGAGAAGGATGATCTTTAAATTCGAAAAC
AAAAGATGCGCATAAACTGCAATGGAAACACTTTTACTGAACAAATTCCAGTTTGTG
>dre.U11.2.chr19 FRAGMENT 836 -> 733
AACTAAATAAATGCACATTGATTGCATTTTTAATATGGATACCCTAATATATATATATATATATATATAT
ATATATATATATATATATATATAATATTTATACA
>dre.U11.2.chr19 FRAGMENT 1275 -> 1330
AAAATATTTGCAAAGATTTTATTTAAAATAAATTGTTATTTTAAGTAAATTTTATT
>dre.U11.2.chr19 FRAGMENT 1548 -> 1630
ATATATTCTATATTTTAATATAATATATTCTATAATTTAAAATATAATTTAGTATTTATATTATTCATTG
ATGAAATACTTTG
>dre.U11.2.chr19 FRAGMENT 1906 -> 1764
GTGATCACAAATATGATTTTTCAAAAGCCATAACTTTGGTCTGCAATGACACCTGCTGGCAAAAATCATT
CTAATATTTAGATTTGGTGCTTGATTATTATTGTTAATAAGTTATTAATAATGATTTTACTAAAGTCAAT
ATT
>dre.U11.2.chr19 FRAGMENT 2101 -> 1954
TGTTTCCCAGTGATGGGTTGCGGCTGGAAGGACATCTGCTGTGTAAAACATATGCTGGATAAGTTGGCGG
GTTATTCCGCTGTGACAACCCCTAATTAATAAAAGGACTAATCCAAAAAGAAAATAAATGAATGAACAAA
TGAATTTT
>dre.U11.3.chr1 FRAGMENT 85 -> 145
TAAAGCTGCTTTGAAACAATAATTATTGTGAAAAGCACTATACAGATAACCTTGAACTGAA
>dre.U11.3.chr1 FRAGMENT 710 -> 489
GTGCTCCGGTTTCCCCCACAAGTCCAAAAAACATGTGGTGTAGGCTAAATTGTCTGTAGTGTATGTGTGT
GAAGTGTGTATGGATGTTTCCTAGTGATGGGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAACATATGCT
GGATAAGTTGTCGGTTCAGTCCGCTGTGGTGACCTCTGAAATAGAGACTAAGCCATAGGAAAATGATTGA
ATAAATGTGTAT
>dre.U11.3.chr1 FRAGMENT 1646 -> 1303
GGTGAGGCAGTGGCGCAGTGGGTAGTGCTGTCGCCTCACAGCAAAAAGGTCACTGGGTCGCTGGTGTGGA
GTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGAC
ATGCTGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGTTTGTGAATGTT
TGTGTGGATGTTTCCCAGAGACGGGTTGCGGATGGAAGGGCATCCGCTGCGTAAAAACTTGCTTGAAAAA
AAGTTGGCGGTTCATTCCGCTGTGGCAACCCCGGATTAATAAAGGGACTAATCCGACAAGAAAA
>dre.U11.4.chr25 FRAGMENT 783 -> 1118
GGTGACACTGTGGCTCAATGGTTTGCCTCATAGCAAGAAGGTCATTGGTTCGAGTAGTTTGCATGTTCTC
TCTGTGTTGCCGTGGGTTTCCTCCAGGTGCTCCGGTTTCCCCCACAGTCCAAAGAAATTTGCTGTAGTTG
AATTTAATAAACTAAATTGGCTGTTGTGTGTGTGTGTGAATATGAGTGTGTAAGTGTTTCCCGGTACTGG
TTTGCAGCTAAAAGGGCTTCTGCTGTGTAAAACATATGCTGGAATAGTTAGTGGTTCATTCCACTCTGGC
AACCCCTGATGAATAAAGGGACTAAGTCGAAGGAAATTAAATGAACAAATGAATAT
>dre.U11.4.chr25 FRAGMENT 1119 -> 1150
TTAAACTTGGTCTATATTTACTTTTAAACATT
>dre.U11.4.chr25 FRAGMENT 1157 -> 1514
GGCGATGCAGTGGTGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGCCTCAGCT
GGGTCAGCTGGTGTTTCTGTGTGGAGTTTACATGTTCTCCCGTCCCAGCGTTTGCGTAGGTTTCCTCCTG
GTGGTCCAGTTTCCCCCACAGTCCAAAGACAAGTGGTACAGGTGAATCGGGCTAAATTGTCAGTAGTGTA
TGAGTGTGTGTGGAGGTTTCCCAGAGATGGGTTGCAGCTGGAGGGGGCATCCGCTGTGTAAAACATATGC
TGGATAAGTTGGTGGTTAATTCTGCTGTGGCGACCCTGGATTAATAAAGGGACTAAGCCAAAAAGAAAAT
GAATGAAA
>dre.U11.4.chr25 FRAGMENT 1515 -> 1539
GTTTTTTTTATGCAAATTTTTATAA
>dre.U11.4.chr25 FRAGMENT 1874 -> 1727
AATTAAAAACTGCTTTTGCTCTAGCCAAAATAAACAAATAAAACTTTTTCCAGAAGACAAAATATTATCA
GACATACTGTGAAAATGTCCTGTTTTAACATCATTAAAAAAAACAAAGGGGGGAGAATAATTCTGACTTT
AGCTGTAT
>dre.U11.4.chr25 FRAGMENT 2200 -> 1885
TGAAGGCAGAATTATTAGCCCCCCTGAATTTTTAGCCCCCTTGTTTATTTTTTCCCCCAATTTCTGTTTA
ACGGAGAAAATATATTTTCAACACATTTCTAAATATAATAGTTTTAATAATTAATTTCTAATAACTGATT
TATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATGTTTTTCAAGACACTTCTATACAAC
AAAGCGACATTTAAAGGATTAACTACAGTAGGTTAATTAGGTTAACTAGGCAAGTTAGGGAAATTAGGCA
AGTTATTGTATAATGATGGTTTGTTCTGTAGACTGT
>dvi.U11.1.scaffold_9 FRAGMENT 1914 -> 1871
ATGCATGCATGTATGCATGTATGAATGCATGCATGTATACATGT
>dvi.U11.1.scaffold_9 FRAGMENT 2058 -> 1915
ATGTATGCATGTATGTTTGTAAGTTTGTATGTATGTATATATGTATGTATGTAAGAATGGATGCATGCAT
GCATACATGTATGAATGCAGGCATGTATGCATGTATGAATGCATGTATGAATGCATGCATGTATGCAAGC
ATGT
>dvi.U11.1.scaffold_9 FRAGMENT 2146 -> 2059
AAGTATATAAGTAGAAATGTATGTAGATGTATGTGTGTATGTAGGTGTATGTATGTATGTTTGTATGTAT
GTATGTATGTGTGTATGC
>dya.U11.2.chrU FRAGMENT 143 -> 15
GATCGACTCGGCTTTTGATCTTGATCGAGAATATATATACTTCATATGGACGGAAACTCTTCCTTCTGGC
TGTTACATACTTTTCAACGAATCTAGTATACCCTTTTACTCCACGAGTAACGGGTATAA
>dya.U11.2.chrU FRAGMENT 245 -> 145
TGACAGCTTTTGGCGGTTTGTTGACGTTAGAGTGGGCGCGGCAAAAAGTTTTTTTACAAGTACAAAAATG
AAAAAATATCAAAACTTTTTTCAAAAGTGTG
>dya.U11.2.chrU FRAGMENT 601 -> 505
TGACAGCTTTTGGGCGGTTGGGGAAGTTAAAAGTGGGCCCGGCAAAAATTTTTTTTAAAAGTTCAAAAAT
GAAAAAAAAACAAAACCTTTTTTCAAA
>dya.U11.2.chrU FRAGMENT 669 -> 603
AGTCGAGTTCCCCGACTATCGAATACTGTTACTCACCTAGTGGAAATGCAAAAGGAAAGTCTTCACA
>dya.U11.2.chrU FRAGMENT 999 -> 956
GTTTTTACTTAATAAAATAATCTTATCATGTATTGACATTTATT
>dya.U11.2.chrU FRAGMENT 1381 -> 1000
TATAAAGAAATGACTGAACCCTTGCTAAGGATCTAATTAAATAATAATTTTACACTAAGAAAAGTGTTAT
TTACTTCCCTAAAGAAATCGACTTTAAAAATCTTTCAAAATGCGTATATTTAAATCATAGGTCCCGACAG
TAACTATGAAAACCAGTAGTAAACTAATAGACATTCAAACATATGCCCAGTTCAAGGAAATCATTCTCAA
AACACATAAAGAAATATTACACCCTGGTATAGAAAAACTCACTTCAGTTCAAAGAACTTTACTATTACCC
AATTACCAAAAAATTATTCAAAACATCATAAACGAATATTAAATCTTTAAGATCTCTAAACTGAACATAG
AATCACAAAATTAACCCTTGAAACATCCCCAG
>dya.U11.2.chrU FRAGMENT 1820 -> 1387
TGACAGTTTTTGTGGGTTTATGGGCGTTAGAGTGGGCGTGGCAAAAAGTTGTTTGGCAAATCGATAGAAA
TTTACAAGACTAATACAAAAATGAAAAAATATCAAAACATTTTTTAAAAGTGCGGGCGTGGCAGCTTTGG
GCGGTTTGTGGGCGTTAGATTGGGCGTGGCAGCATGATTCGAAACTTGCGCTGCGTCTATGTCCCTGGAG
TCTGTATGCTTAATCTCAACGTTCTAGCTTTTGTAGTTCCTGAGATCTTGACGTTCATACGGACAGACAG
ACGGACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTAT
ATGGTCGGAAACGCTTCCTTCTGCCTGTAAAATACTTTTCAGCGAATCTAGTATACCCTTTTACTCTACG
AGTAACGGGTATAA
>dya.U11.2.chrU FRAGMENT 1904 -> 1836
CAAGTGAGAACGCTATAGTCGAGTTCCCCGACTATTTGATACCCGTTACTCAGCTAGTGGAAGTGCGAA
>dya.U11.2.chrU FRAGMENT 2199 -> 1905
CAGAGATGGAAGATACAACTTAACGAATACGATTATAATATTCAATATCTACCTGGTAAAGATAATCATG
TCGCTAATGCTATATCTAGTGCTCAAATTCAAGAAAACTTCCTAGGAGAAGATGCCCCAATGTTCTTTCC
CACAGCAGCTTTTGTGCATAGTGCACCGGAAGACAACCTAGATCACATTTCAGTAACCGAAAGACCTCTT
AATCTTATTATAACAGACAATTCGACTTAATAAAAGACAATTTTGACGATGTCCATAAAGTATTTCCATA
AAACTAGAATAAAAA
>fru.U11.3.scaffold_1626 FRAGMENT 2054 -> 2088
AATGGGAGGAGGAGGAGGAGATGGGGGTGTTGCAG
>fru.U11.6.scaffold_1147 FRAGMENT 1737 -> 1817
ACGCACGCACGCACGCACGCACGCACACACACACACACACACACACACACACACACACACACACACACAC
ACACACGCCAA
>gga.U11.1.chr23 FRAGMENT 199 -> 18
TCAGAGGGCCGGAGCTCCTCTGCTGCGTGTGCCTATGGGGGTGTTCAGCCTGGAGAAGAGAAGGCTCCGG
GAGAGCTCACTGCATCCTGCCAGTGCTTGGAGGGAGGTCTCAGACAGGAGGGGGAGCAACTTCTGACGTG
GGCGGATAACGACAGGACAAAGGGGAATGGCTTTAAACTGAA
>gga.U11.1.chr23 FRAGMENT 627 -> 461
GTGCGCGGCGACGGGAGGGCAGCCGGCGGCGGGGCCTCGGTCCGCCCGCGGGGCATGGGGAGGTACGGGG
CGAAGGGGCCGGGAGCGGTGCGGGGTGAATGCGTGGTGCGGCCGGCCGAGCTGCAGCCGGTACCGGCGGG
GCCGAGGCTGAGCTGTGAGGGGCAGCG
>gga.U11.1.chr23 FRAGMENT 628 -> 759
ACCGGAAGCCCTTCCGGGGCAGCACCCGGAAGTACTTTCGGTGCCGCCAAATCGGAAGACGAAGCGCACT
GCGCGTGCGCAACGCGCGTTCCGGCGGAGTCGCAGCTGCGCGTGTGCAGAGCGGTGGCGGGG
>gga.U11.1.chr23 FRAGMENT 1591 -> 1671
CAGCTGCAGCGGGGGGGAAACGTACCGTGCTGGGGGTGAGCCCGGGGAGCCGGCGTGGTGCGGGGCGGCG
GGGAGCCCCGC
>gga.U11.1.chr23 FRAGMENT 2106 -> 2179
CCCCACACGTCCCTCTGCTCCAGCACGTGGGATCCCAGTGCCCTCTGGCCACCTTGCGATGCCCCTGCGC
TGCC
>gga.U11.2.chr4 FRAGMENT 1162 -> 2200
CTAGAACTGAACTTGGCCACTAGGGTAAAGGACAACAATTAACATTTCTATCAATACATCGATAGCAAGA
GGAGGGCTAGGGAGAATCTCCATCTCTTGTTGGATGCCGAGGGGAATTCCACCACANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTACTCCCTGGGCACACAGCTCCTTGAGCTGGTAGATAGGGATG
GGGAACAGAATAGGCCATGCATAATACACAATGAGATGGTTTTGAACCTGTTCCGAAAGCTGGACACTCA
CAAGTCCATGGGGCCAGATGAATTGCACCCTAGAGTGCTGAGGGAGTTGGCAGATGCCAAACCAGCCTCC
ATCATTCTTCAGCAGTTGTGGCTAACCAGGGATGTCCTGGTGGACTGGAGACTGTCAAATGTGACAGCCA
TCTTCAAAAAGGGCTGGAAACATGATCCTGGTAGCTACAGACCTATCAGTCTCACCTCGGTGCCGGGGAA
TGTTATGGAACGGATAATCTTGGGAGCCATCATAGACCAGTCTAAGGTCAACCAGGGATCAGGCCCAGTC
AGCATGGGTTTATGAACGGTAGATCCTGTTTGACAAACCTGATTTCATTCTATGACCAGGTGACCTGCTT
ATTGGATGAAGGCAAGGCTGTTGATGTGGTTTACCTGGACTTCAGTAAAGCCTTTGACCCTGTCCCTTGC
AACATTCTTGTGGAGAAGCTGGCCACCCACAGTTTGGATGGCCGTATGCTCTGCTGGGTGAAACACTGGC
TGGATGGCCAGGCCCAAAGAGCTGTGGTCAATGGAGGTAAATCCAATTGACGCCTGGTCACAAGCGGTGT
CCCCCAGGGCTCAGTACTGGGGCTGCTTTTATTTAACATCTTTATTAATGATCTTAACAAGGAGATTGAG
TGCACCCTCAGTAAGTTTGCAGACGACACCAAGTTGGGAGGGAATTTAGATCTGCCTGA
>gga.U11.3.chr21 FRAGMENT 346 -> 373
GTTCCAAAAAAAAAAAAAAAAAGAGAGA
>gga.U11.3.chr21 FRAGMENT 469 -> 374
CTTCCTTTCTCCTCTTGTTCGTTCTTTATTTTTTCTTTTCTTCTATTTCTTTTTTTTTTCTTTCATTCAT
TCTTTTTTTCTTTCTCTCTCTCTCTC
>gga.U11.3.chr21 FRAGMENT 540 -> 470
ATTTCCTATTTATTCCCTTTATTTCCAATGCTCCATGTTACCTCTTCCCCCTTCTTGCAGTCCGCATATT
T
>gga.U11.3.chr21 FRAGMENT 2111 -> 2068
GTGAGTTGGACTAGATGACCTTTAAGGGTCCCTCCCAGCTCAAA
>gga.U11.3.chr21 FRAGMENT 2114 -> 2196
AGGAAGGGGATGACTCCTTAGTAGGGTCTGTTGTGATAGGAAAAGGGGAAATGGTTAACTAAAAGAGGGG
AGATTTAGACTGG
>gga.U11.4.chr11_random FRAGMENT 69 -> 2
GTGAGAACAACAGGAGGAGCCAGGCAGGGGCATCTGGAAAACCTCACGCTGCTGGGGCTAAAAACAGC
>gga.U11.4.chr11_random FRAGMENT 1015 -> 951
CTTCCCTGAGAGCCCTGGCAGCCGCCCAGACCACAGGCAGCCAGACCGCAGTGCAGCGCCACGCC
>gga.U11.4.chr11_random FRAGMENT 2031 -> 2200
GAGCGTCTTTAAGGTAAGGGTGACGGGGCACTGGAACAGATTGCTCAGAGAGGTTGTAGAGTCTCCTGTA
GAGATATTCAAGACCTGTCTAGATGCCTACCTGTGTGACCTATTGTGGGTAACCTGCTTTAGCAGGGGGT
TGGACTTTACGATCTCTTGAGGTCCCTTCC
>gga.U11.8.chr27_random FRAGMENT 1323 -> 1385
TGGAGATGCAGATTGAGAACCTGAAGGAGGAGCTGGCCTACCTGAAGAAGAACCACGAGGAGG
>gga.U11.8.chr27_random FRAGMENT 2033 -> 1930
CCACCTCCCTTCCCCTCCCACTGTGCCGCCCCATGAAACCCCACGCACTGGGCGTCCTCGCCCTCCAGCA
GCCGGCGGTACGTGGCGATCTCCTGCTCCAGGCG
>gga.U11.9.chr13_random FRAGMENT 143 -> 1020
ATGATACAAAGCTGGGAGGAGTGGCTGGAACACTTGAAAGCTGTGTCAACAGCTTCAACAGGACCTGGCC
AGACTGGAGTGCCTGGCAGGGAGGAACCTGATGTGGTTTAACAAGAGCAAGTGTAGAGTCTTGCACCTGG
GGAGGAATAACTGCATGCATCAGTACAGGCTGGGAGATGAACTACTGGACAGGAGCCTGCAGAGAAGGAC
CTGGGGGTCCTGGACAACAGTTTGGTCATGAGCCAGCGGTGTGCCCTCATGGTCAAGAAGGCCAATGGTA
TCCAGGGGTGCATTAAAAAGAACATGGCCAGCAGGTCGAGGGAGGGAATCCTCCCCCTCTACTCTGCCCT
GGTGAGGCCACATTTAGACTACTGTGTCCAGTTCTGGGCTCCTCAGTTCAAAAAAAAAAAACAACAAATG
GGTATCTCCTAGAAGGGATCCAACGGAGGGCCACAAAGATGATTAACAACCTGAAGTGTTTCCCTTACGA
GGAGAGGCTGAGTAACCTGCATCTGTTCAGCCTGGGGAAGATTGAGAGGGGATATGATAAGCGTTTATCA
ATATCTAAAGGGAGGTGGGAGGCAAATGGATGAGGCCAGGCTCTTCTTGGTGATGTGTAGCAATAGAACA
AGGAGTAATGGCCTAAAACTTGAATATAGAAGGTTCCATACTAACATGAGGAAGGACTTCTTTATGGTAA
GGGTGACGGTGCACTGGAACAGGATGCCAAGAGAGGTTATGGAGTCTCTTTCTCTGGAGATATTCAAGAT
TTGGCTGGATGCCAACCTGTGAGACTTACTGAAGGGTTCCTGCTTTAGCAGGGGGGTTGGACTTTATGAT
CTCTTGAGTTCCCTCCCCAACACCTGTGATTCTGTGAT
>gga.U11.9.chr13_random FRAGMENT 1680 -> 2180
ATTCCAGGGTTCTGAAGGAGCTGGCTGAGGTGGTTGCCAAGCCATTCTCCATCATATTTGAGAAGTCATA
GCTGTCAGGCAAGGTCCCAGATGACTGGAGGAAGGGTTACATCACTCCCATTTACAAGAAAGGGAGCAAG
GAGGACCCAGGGAACTACAGGCCAGTGAGTCTCACCTCTGTGCCTGGGAAGATCATGCAACAGATCCTCC
TGGATGACATGCTTGATCACATGAGGAATGAGCGTGTGATCCGAGACAGCCAGCACATCTTCACCGGGGG
GAGGTCATGCTTAACTAATTTTGTGGCCTTCTATGATGGAGTGACAGCATTGGTGGATGTGGGGAAGGCA
ACCGATGTCATTTACCTGGACTTGACCAAGGCCTTTGACACGGTCCCCCGCCACATCCTTATCTCTTTTA
TGGAGGGATGTGGATTTGATGGGTGGACCACTCATTCCTTTAGGGATTGGTTGAAAGGCTACAGACAGAG
GGTGGTAATCA
>gnl|ti|307976921 FRAGMENT 75 -> 42
AATTATGATCATTTTGTCTTTGATTTGTCAATTA
>gnl|ti|307976921 FRAGMENT 751 -> 380
TGAAGGATGAGTTATGGTCATGTGATTGCATTGTGAAAGGAACGTTGTGGAATCGATCAGAAAAGGTTGA
TCATCTCGCAATAAGACAGTAATGGTGTGTACTGCAAGGTTCTGGAATTATCAAAATGATAAGAAATGTG
GCCCAGTCTTGCAGTTATGAGTTACAAGCACTGTACACAGAAATATGTATATGGGACTACACGAACACGT
GGCATAACATTCCGTCCTGATTTTGTGCTGTTATAGGACAGTATTAGATGCTATTCAGGGAACTTTTTTT
TTTATCTGATGTTCTTCCACACTTGCATAATTAATAACAATGATAACGCTCTCAAATTATTTTTCTCCTC
TTCCCAGAACTCAACTTCCTCT
>hsa.U11.1.chr1 FRAGMENT 2 -> 287
CGGTGGCTCACGCCTATAATCCCAGCACTCTGGGAGGCTGAGGCGGGCGGATCACAAAGTCAGGAGATCG
AGACCATCCTGGCTAACATGGTGAAACCCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTG
GCAGGGGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTGGAGC
TTGCGGTGAGCCGATATCGCGCCACTGCACTGCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAA
>hsa.U11.1.chr1 FRAGMENT 765 -> 715
GGGAATGTGCTGGCGGGCACCGAGGGAGTGGCGGGGAAGAGCGGCTGCGCG
>hsa.U11.1.chr1 FRAGMENT 1192 -> 1258
GTAACTGAAAAGAGATTCTGTGTGTGTTTTTTTTTTTTTTTAGAGGCTGCATAGTTATTTGTATGAA
>hsa.U11.1.chr1 FRAGMENT 1277 -> 1426
GCAAGGTAATTCAGACCTGTATCCTAGCACTTAAGAAGTGGAAGTGGGATAACCCTGCGTGTTCTCGTGT
GGGAGGCTAGCTTAAGCAACAAAGCAGGAAGGCCCCACCAACAAAAGAATTTAAAAATTATACGTGCGTG
GTGGCGCGCG
>hsa.U11.1.chr1 FRAGMENT 1687 -> 1502
GGCCGGGCGCGATGGCCACGCCTGTAATCCTAGCACTCCTAGAGGCCGAGGTGGGCGGATCACCAGATGA
AGAGATGGAGACCATCCTGGCCAACATGGTGAACCCGTCTCTACCAAAAATGCAAAAATTAGCTGGGCGC
GGAGGCGCACGCCTGTAGTCCCAGCCATTCGGGGGGCTGAGGCAGG
>hsa.U11.1.chr1 FRAGMENT 1788 -> 2092
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTCCTAGAGGCCGAGGTGGGCGGATCACCTGAAG
TCGGGATTTCAAGACCAGCCTGACCAACATGGAGAAACCCCTTCTCTAACTAAAAATACAAAATTAGCCA
GGCGTGGTGGAGTATGCCTGTAATCCCAGTTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGG
AGGCGGAGGTTGCAGTGAGCCGAGACCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGT
CTCAAAAAAAAAAAAAAAAAAAAGA
>hsa.U11.1.chr1 FRAGMENT 2093 -> 2187
TTAAAGACCTAAATGTAAGACCTTAAACTATAAAACTCTTAGAGAAAACACAGGGGAAAATGACATCGAA
TTTGTCAGTGATTTCTTGGATATAA
>hsa.U11.2.chr10 FRAGMENT 286 -> 1
GGCTGGGCAGAGGGGCTCACCCCTGTAATCCCAGCCCTTTGGGAGGCCAAGGTGGGCGGATCACTTGAGG
TCAGGAGTTTGAGACAAGTCTGGCTAACATGGTGAAACCCTGTTTTGACTAAAAATACAAAAATCAGCCG
GGTGTGGTGGCACATGCCTATAATCCCAGCTAATAGGGAGGCTGAGGCAGGAGAACTGCTTGAACCTGGG
AGGCAGAGGCTGCAGTGAGCTGAGATAGTGCCACTGCACTCCAGCCTGGGCAACAGATCAAGACCTTGTC
TCAAAA
>hsa.U11.2.chr10 FRAGMENT 364 -> 288
CAGGGGTGTCCAATCTTTTGGCTTCCCTGGGCCACACTGGAAGAACTGTCTTTGGCCAACATAAAATATG
CTAACAC
>hsa.U11.2.chr10 FRAGMENT 889 -> 580
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGGTGGGTGGATCACCTGAGG
TCGGGAGTTAGAGACCAGCCTGACCAACACAGAGAAACCCTGTCTCTACTAAAAACACAAAATTAGTTGG
GCGTGGTGGCGCATGCCTGTAAACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAACAAAAACAAAAACAAAAACAAAAA
>hsa.U11.2.chr10 FRAGMENT 1457 -> 1163
GGTTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGATGCAGGCAGATCAGGAGGTC
AGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCAG
GCGTGGTGGCAGGCACCTATAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGGA
GGCAGAGGTTGTAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGTTGACAGAGCAAGACTCCGTCTC
AAAAAAAAAAAAAAA
>hsa.U11.2.chr10 FRAGMENT 1761 -> 1463
GCCACGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACTTGAGGC
CAAGAGTTTGAGATTAGCCTCGCCAACACGGTGAAACCTCATCTGTATTAAAAATACAAAAATTAGCTGG
TGTGGTGGGACACCTATAGTCCCAGCTACTTGGCAGGCTGAGGTACTAGAATCACTTGACCCCAGGAGGA
GGAGGTGCAGTGAGCCGAAATCACGCCACTGCACTCCAGCCTGGTGACAGAGCAAGACTCTGTCTCCAAA
AAAAAAAAAAAAAAAAAAA
>hsa.U11.2.chr10 FRAGMENT 1935 -> 1810
TATTTACCATATGTTTTCTATACTTAAGATACACAAAATGTTTGTCCTTGTGTTATAATCACCCACAACA
TTTAATACAACAAACCAATCACATAACCTAGAAACAGTGCATCACACCACACAGCC
>hsa.U11.2.chr10 FRAGMENT 1936 -> 2127
TCTCTATTAAAGACAAGAAATGCGGCTAGGTGCGGTGGTGGCTCATGCCTGTAATCCCAGCACTTCGGGA
GGCAGGGTGGGAGAATCGCTTCAAGCCCGGGAGGTCGCAGCTGCAATGACCCATGAGTGGCTCTGTACTC
CAGCTTGGGCAACGGAGCAGGACCATGTCTCAAAAAAAAAAAAAAAGAGAGA
>hsa.U11.2.chr10 FRAGMENT 2128 -> 2195
GGCCGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGAAGGCAGAGACGGGCAGATCATTTGA
>hsa.U11.3.chr11 FRAGMENT 99 -> 28
TTGTAAGTATCCCCCTCAGAATGCAAACTGCATCAGAATACGGGTTTAGTTTGTCTTTGTCACCACTGTA
TC
>hsa.U11.3.chr11 FRAGMENT 364 -> 100
ACTCTCTGCCCCACTCCATTAACTCTAACAACATTGACTTTCTGTGGTTCCTTGAACTCAAACTCATTTT
CATCTCAGGGGCTTGGCTACCTTCTTTATTTTGCTTAGGATGCTCTTCCTAGACCTTTGCACATCTGTCT
CTTCTCATTATTCAGATGTCTGCTTGAATGTCACCTGCTTATCAAGGACTTCCTTGCTACTCTGTCTACA
GTACAAGTACATCTCCCCCACTCAAATCACTTTGTTCTTTTCTTAGCACTTATCA
>hsa.U11.3.chr11 FRAGMENT 487 -> 388
TCTCCATACAGCAGAGTGATTTTTAAAAGTATAAGTCATATGACGTTTTGTGTTTTTTACTTAAAACTCT
GCAAAGATTTCCCATTGCAATAAGAATAAA
>hsa.U11.3.chr11 FRAGMENT 609 -> 1549
CAACAAGCAAAAAACAAATATTCCAATTTAAAAATGGGCAAAGGACATGAACAGATACTTCTCAAAACAA
GACAGAAAAATGGCCAACAAACATGAAAAAATGCTCATCATCACTAATCATCAGAGAAATGCAAATCAAA
ACCACAATGAGGTACCATCTCACACCAGTCACAATAACTATTATTAAAAAGTGAAAAAAAATATCAGATG
CTGGCGAGGCTGTGGAATGCTTGTACCCTGCTGGTGGGAATGCAAATTAGTTCAGCCACTGTGGAATGCA
GTTTGGAGATTTCTCAAAGAACTTAAAACAGAACTACCATCTGACCCAGCAATTCCATTACTGGGTATAT
ACCCAAAGGAATATAAATCATTCTACCAAAATGATACATGCAAAAAAGGGCTTCTGTCGTGAGTGGCACA
CGTAGGGCAACTCGACTGCTCTGCATGCGGAATCGACATCAAAATGATACATGCACACATATGTTCATCT
CAGCACTATTCACAATAGCAAAGGCATAGAATCAACCTAGGTGCCCATCAACAATGGTAGACTGGATAAA
TAAAATGTGGTACATATACATCATAGAATACTACACAGCCATAAAAAAGAGCAATATGATATCCTTTGCA
GGAACATGGATGCATCTAGAGGCCATTGTCCTAAGTGAGTTAATGCAGAAACAGAAAACCAAATACTGCA
TGTTCTCACTTATAAGTAGGAGCTAAACAATGAGTACACATGGGCATAAAATTGGAACAATAGACACTGG
GGACTTCCAAAAGTTGGGGGAGGGGTGGACATGGGTTGAAAAACCATTGGATACTATGCTCACTACCTGG
GTGACAGGATCATCTATACCTCAGACCTCAACATCACACAATACACTTGTAACAAACCTGCACATGTACC
CTCTGAATCCAAAATGAAAGTTGGGAAAAAA
>hsa.U11.3.chr11 FRAGMENT 1713 -> 1831
TGTTATGGGCTAAATTGTGTCCACCCCCAAAACTCTTATACTGAAGTCCTAACCCCTGTACCTCAGAATG
TCACTCTATTTGAAAATAGGTTCTTTAAAGAGTTAATTCAGTTAAAATG
>hsa.U11.3.chr11 FRAGMENT 1965 -> 2116
AGAGAATAAGTAGACATGTCGTGTGTGACTTCCAAAAATTCTCCCTAAGGGGAAGGCACTACACTTTTGT
CCTCCTTACTTCCCTCTTCTTGCTGCTTCAAATGCAGATGTAATGACTGAAGCTCTAGCAGCCACCCTGG
GGCAAAAGGTAA
>hsa.U11.3.chr11 FRAGMENT 2159 -> 2200
GGCGGGGCAAGGTGGCTCAGGCCGATAGTCCCAGCACTTTGG
>hsa.U11.4.chr8 FRAGMENT 1 -> 181
AAAATACAAAATTAGCCAGATGTGGTGGTGCACACCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCAGGAGGCAGAGAGTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCA
ACAAGAGCAAAACAACTTCTCAAAAAAAGAAAAAAAAAAAA
>hsa.U11.4.chr8 FRAGMENT 182 -> 403
GTTTAAAGTACATGCTGGATTTTGAAGAGTTGTATGAGGAAAAGGATATAAATTATCTTGTCAATTTTTA
ATATTGATTTCACATTGAAATAACATATTGCATATGTTATACTAAATAAGATATGTTATTAAAATTAATT
TCTCCTTTTTTTTTTAGTGTAGCTACCAGGAAATTCAGAATTACATATGTGACTTGCATTGTGTTTTTAT
TGAGTAGCGTTG
>hsa.U11.4.chr8 FRAGMENT 497 -> 579
GTGCCAACCCTGTTCCATGTTGCAGCTGCCTGGGGGGATGTGTGAGGACTGTGAGACCATACCTTGGCTG
AGCAGGCAGGAAT
>hsa.U11.4.chr8 FRAGMENT 1384 -> 1196
CCACTTTTTGTCTTTTATAGTGATTTTTACTGTATCTTTTCTGTACTTGTATACACAGGATGCTTGCCAT
TGTGTTATGGTCACCTACACCATTTAAACCAGTAAGATAGCATGCAGTCGCATAATGTGGAAACAGCATA
TATCCTACCACATAGCCCTGAGGTGGGGCAGGATCTACTACGGAGGTTT
>hsa.U11.4.chr8 FRAGMENT 1385 -> 1509
GGCGAGGTGCAGGGGCTCACACCTGTAATTCCAACACTTTGGGAGGCTGAGGCAGGAGTATCTCTTGAGG
TCAGGAATTCAAGACCAACCTGGTCAACATAGTGAGACCCCATCTCTACGAATAA
>hsa.U11.4.chr8 FRAGMENT 1696 -> 1777
TCTGCTTCTTCACTGCTGAATCCCCAGCACCAGGAAAAATGATTGGAACCATTAGTTGCTAAATAAGTAT
TTGTTAAATGAA
>hsa.U11.4.chr8 FRAGMENT 1959 -> 1896
TTGGCTTAGAGTCGGAAAGACACCAAAATTTGGAAGGAAGTTAAAAAACGAGGAAGGGAGAGAA
>hsa.U11.5.chr8 FRAGMENT 441 -> 645
GGGGAAAATCTTCATGATGCTGGATTTGGTAATGATTTCTTCGCTATGATACCAAAAGCATAGGCAACAA
AAGAAAAAAATAGATAAATTAGACTTCATCAAGGTTAAAAACGCTTGTGTATTAAAGGGCACAATCAACA
GAGTGAAAAGTCAACCCATGGAATGGGAGAAAATATTTTCAAATAATGTGTTTGATAAAGATTAA
>hsa.U11.5.chr8 FRAGMENT 646 -> 1002
TATTCACAATATATAAAGAACTTCAACTGAACCACAACAACAACAAAATGAAAAGTCCCAACTAAAAAAT
GGGCAAACTATTTCAATAGACCTTACTCCAAAGAAAATATGCAGATGATCGGGGAGCATATAAAATGATG
CTCAAAATCATTAATCATTAGAGAAATGAAAATCAAATTCACAATGAGATACCACTTTACACTCACTAGG
ATGGCTAACATCAAAAAACTGGAAGATAACAAGTGTTGGTGAGGATGCAGAGGAATTAGAACCCTTGGGC
ATTGCTGTTAAGAATGTAAAATGGTATTCCTGCTCTGGAAATTGATATGATAGTTCTTTAAAAAATTAAA
TAGAGAA
>hsa.U11.5.chr8 FRAGMENT 1146 -> 1426
AAAAAATTAAACAGCATTGCCGTATGATCTAGTAATTTCTATTCAGGGTATACACCGCAAAGATTTGAAA
ACAGATGACTCAAACAGATATGTGTACACTCATGTTCAGGGCAGTATTATTCACAATTGCCAAAAGGTGG
AAGCAACTCACATATTTGTTGGCGGATGAATGAATAAGCAAAACATGGTATAAACACACAATGGAATATT
ATTCATCCCTAAAAAGGAAGGGGATTCTAACACATGCTTCAGCATGGATCGACCTTGAACAAATTATGGT
A
>hsa.U11.5.chr8 FRAGMENT 1598 -> 1429
CCTCAGTCATCTGGTTCTTCTTTGAGTTTTGTATTTTGAGGTTCCTGTACATTTGCCCATAAATAATTTG
TATGCCTTTTCTCCTGTTAATCTGTCTATTGTCAGTTTGTTTTATAGACTCAAATTACCAAGCTTTCAGA
AGGAAGAGGAAGGAAAATCCTCTTTGCCCC
>hsa.U11.5.chr8 FRAGMENT 1736 -> 1687
GAATTGGACTATGTAATCTCTAAGTTTTCATTCAATTTAACATTCTATGA
>hsa.U11.6.chr17 FRAGMENT 1864 -> 1772
GTACTGGCTGCTTCAAATGCTCAAATCTATCACAAATAAAAAAGATTTATTGTAAGATGATTCTGATGAC
TAATGGAAGCTCTGAAGGATTAA
>hsa.U11.6.chr17 FRAGMENT 2200 -> 2103
CCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGTGCCATGGCACTCCAGCCTGGTCAACAAGAACAAAA
CTCCGTCTCAAAATAAATAAATAAATAA
>hsa.U11.7.chr14 FRAGMENT 1509 -> 1113
TGATATGGTTTGGATCTGTGTCACCGCCCAAATTTCATCTTGAATTGTAATCCCCAATGTTGAAGGTGGA
GCCTGCTGGGAGGCATGGGTCATGGGAGTGGATTTCCCCATTGGTGCTGTTCTCATGATAGTGAGTGAGT
TCTTATGAGATCCGGTTGTTTAAAAGCATGTAGTACGTCTCCCCTCTCTTGGTCTTGCTCCTGCTCCAGC
CATGTAAGAAGAGCTGCTTCTCCTTTGCCTTCTGCCATGAATGTAAAGTTCCTGAAACCTTCCCAGAAGC
TGAACAGAAGCTGCTGTGCTTCTTGTACAGCCTGCAGAACCGTGAGCTAATTAAACCTCTTTTCTTATAA
ATTACGCAGTCTCAGGTATTTGTAGCGTGTGAGAATGGACTAATACA
>hsa.U11.7.chr14 FRAGMENT 1552 -> 1579
AAATAAATAAATAAATAAATAAATAAGC
>hsa.U11.8.chr21 FRAGMENT 421 -> 302
GGCTCTAGCACGAACTGTACTGCTAATTAGCGGGGTTCTTTGTACAAGTCACTTAAGCTCCTTGGGCTTC
ATGTTGCTTCTCTCAGAAGAGAAGAATCTGGACTGGACGGCCTCTTAGGT
>hsa.U11.8.chr21 FRAGMENT 1334 -> 715
ACTTTGAGACCATATCCGTGGACTTAGTCAAATTTTCCAGAACTTTTGTTGAGAAGCAGATGGGTTCATT
AGACGACTAACCCAAGATCCACAAGATCCAGTGGAATAGGAATTAATTACATAGGATTAAATGAATTGGT
GAGGGATGATAGTAATTTTTGTCTGGAATACTGTTGATGTTATTTTAATGTCTTATTTTCCTTATATATA
AGGAAGCCCTTTTTGCTTTCTCTTAAGCTTTCCATACATCATAATAATGTTGTAGATTCTGCTTTTGTAA
GCTGAAATGAATCACTTGTAAATGACCTCTTATTCTCCCTGCCCGATTCCTCTGGAGTTCAAAAATTCTT
ATTGAATCTGCTTATTCAATCAGAATACATATATATTTTTTGGCAATATACTTATTTGCATAACTTCAAC
AAGAATCTGTCTTCCTTCTTGCCAGGGCATAATTGAAAACATTGGTTATGTAACCTAGGTCCTGCCTGCC
ATGTCCTATTAAGAATGATGTTCATTTAATCAGATATGACCACATGCTTTTAAAGAACTAAGGTTGACTT
TATGGAACCAATGCTTACTTACAAAGCCCTCTTGGGAAAACTGGTCTGGTCCTTGGCCTA
>hsa.U11.8.chr21 FRAGMENT 1642 -> 1335
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTC
AGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAAACACAAAAAATTAGCCG
GGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGG
AGGTGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTC
TCAAAAAAAAAAAAAAAAAAAGAAAACA
>hsa.U11.8.chr21 FRAGMENT 1848 -> 1735
CCATTTTAAGTTTTTTGTCATCTACAGATATTTTTGTTAGCATGTTTTGCTTTGATGCTTCCCTGAAGTT
ATTTGTAATGAGCTACAAGCAAAAATGCTTCATCTTTCATGAAG
>hsa.U11.9.chr5_random FRAGMENT 1 -> 269
ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGCAAAGG
AGAAATAAAATCCTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCTTCCCTTACAAGAG
ATCCTGAAGGAAGCACTAAATAGGTAAAGGAAAAACCAGTATCAGCCACTGCAAAAACATACCAAATTGT
AAAGACCATCGACACTGTGAAGAAACTGCCTCAACTAATGGGCAAAATAACCAGCTAGC
>hsa.U11.9.chr5_random FRAGMENT 278 -> 1988
GTGACTGGCAAGATGGCCGAGTAGGAACAGCTCCATTCTGCAGCTCCTAGCAAGATCAATGCAGAAGGCA
GGCGATTTCCAACTGAGGTACCCGGCTTATCTCAGTGGGACTGATTAGACAGTGGGTGCAGTTGGTGGAG
GGTGAGTGGAAGCAGGGTGGGGCATTGCCTCACCGAGGAAGTGCAAGAAGTTGGGGAACTTCCTCCCTTA
CTCAAAGGAAACCATGAGGGACTGTGCTGTGAGGAACGGTGCACTCTGGCCCAGATACTACACTTTTCCC
AAGGTCTTTGCAACGCACAAACCAGGAGATTCCCTGGGTGCCTACGCCACCAGGGCCCAGGGTTTCAAGC
ACAAAACTTGGCAGGTGTTTGGGCACACACTGAGCTAGCTGTAAGAGTTTTTTTTTTCATACCCCAGTGG
TACCTGGAATGCCAGTGAGACAGAACCATTCACTCTCCTGGAAAGGGGGCTGAAGCCAGGGAGCCAAGTG
GTCTAGCTCAGTGGATCCCACGCCCATGGAGCCCAGCAAGCTAAGACCCACTGGCTTGAAATTCTCGCTG
CCAGCACAGCAGTCTGAAGTTGACCTGGGATGATAGAGCTTGGTTGGGGGAGAGTTGTCTGCCATTACTG
AGGCTTCAGTAGGCGGTTTTCCCTTCAGTGTAAACAAAGCCACCAGGAAGTTCAAGCTGGGCAAAGCCCA
CCGCAGCTCAGCAAAGCGGCTGTGGCCCGACTCCCTCTCTAGAGTCCTCGTCTCTGGGAAGGGGATCTCT
GAAAGAAAGGCAGCAGTACCAGTCAGGGACTTATAGATAAAACTCCCATCTCACTGGGACAGAGCACCTG
GGGGAAGGGGAGGCTGTGGGCACAGCTTCAGCAGACTTAAACAGCCCTGCATGCCAGCTCTGAAGAGAGC
AGCGGATCTCCCAGCACAGTGTTCGAGTTCTGCTAAGGGACAGACTGCCCTTCAACTGGGTGCCTGACCC
CTGTGCCTTCTGATTGGGAGACACCTCCCAGCAGGGGTCAACAGACACCTCATACAGGAGAGCTCTGGCT
GGCATATGGCGGGTGCCCCTCTGGGACGAACCTTACAGAGGAAGGAGCAGGCAGCAATCTTTGCTGTTCT
GCAGCCTCCACTTGTGATCCCCAGGCAAACAGGGCCTAGAGTGGACCTCCAGCAAATTTCAGCAGACCTG
CAGCAGAGGAGCCTGACTGTCAGAAGGAAAACTAACAAACAGAAAGGAATAGCATCAACATCAACAAAAA
GGACATCCACACAGAACCCCATCTGAAGGTCACCAACATCAAAGACTAAAGGTAGATAAATCCACGAACA
TGAGGAAAAACCAGTGCAAAAAGGCTAAAAATTCCAAAACCCAGAATGCCTCTTCTCCTCCAAAGCATCA
CAACTCCTCGCCAGCAAGGGAACAAAACTGGATGGAGAATGAGTTTGACGAATTGACAGAAGTAGGCTTC
AGAAGGTGGGTAATAACAAACTCTTCCAAGCTAAAGGAGCATGTTCTAACCCAATGTAAGGAAGCTAAAA
ACCTTGAAAAAAGGTTAGACGATGGCTAACTAGAACAACCAGTTTAGTGAGGAACATAAAGGACCCAATG
GAGCTGAAAAACACAGCACGAGAACTTCATGAAGCATACACAAGTCTCAATAGCCAAATCGATCAAGTGG
AAGAAAGGATATCAGAGATTGAAGATCAGCT
>hsa.U11.9.chr5_random FRAGMENT 1989 -> 2200
TAATGAAATAAAGCATGAAGACCAGATTAGAGAAAAAAGAATGAAAAGAAATGAACAAAGTCTCCAAGAA
ATATGGGACTATGTGGAAAAACCAAACCTACGTTTGATTGGTGTACCTGAAAGTGACAGGGGGAATGGAA
CCAAGTTGGAAAACACTCTTCAGCATATTATCCAGGAGAACTTCCCCAACCTAGGAAGACAGGCCAACAT
TC
>lcl|Contig62_Contig4544:78777-80976 FRAGMENT 327 -> 222
AGAACAGACAGAGGACAGACTAAACAGAAGCCCAAAAACCGAAGAAAAACAGAAGCCCAAAAGCCTTGGG
CTGAAGAGAAGGGAATTATTGGAATAACTGAAGGAA
>lcl|Contig62_Contig4544:78777-80976 FRAGMENT 847 -> 883
ATATCATTATGAATATATGTACATATATATATATATA
>lcl|Contig62_Contig4544:78777-80976 FRAGMENT 1271 -> 1225
CACGCTGTCGTAGGCGCGTGGCATGCTGCCATGCCGCCTGGGGCACA
>lcl|Contig62_Contig4544:78777-80976 FRAGMENT 1478 -> 1534
GAAAAACCTGAACCTGAAACCCACACCGAACCGAACGAACACCCACATGCACAGCCC
>lcl|chr15:51459567-51461766 FRAGMENT 31 -> 152
AAGCACCCCTCCTTCTCTCCCTCCCTCCTCCCTCCTTCCCTTGCTTCCTCCCTTGTTCCCTCCCTTTCTT
TATCTAGTCATTCCTATTTTCCTATTTCTCTCCTTCCCACCTTCTTTTCTAC
>lcl|chr15:51459567-51461766 FRAGMENT 327 -> 409
TGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCCCTCTCT
CTCTCTCTCTCCC
>lcl|chr15:51459567-51461766 FRAGMENT 1164 -> 1249
TCTCTCTCTGTCTCTGCCTCTCTCTGTATCTCTGTCACTGTATCCCTGTGTCTCTGTCTCTGTCTCTGTC
TCTGTCTCTCTCTCCT
>lcl|chr15:51459567-51461766 FRAGMENT 2200 -> 1592
AAATATGGAGGCAAAGTGTGGATCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCTTCACCTGGGGATC
CATCCCATATACAGTCACTAAACCTAAACAATATTGTGGATGCCAAGAAGGGTGTGCTAACAGGAGCCTG
ATATAGCTTTCTCCTGAGAGGCTTTGCCAGAACCTGACAAATACAGAGGTGGGTGCTTGCAGACAACCAC
TGAACTGAGAACAGAATTCCCACTGGAGGAGTTAGGGAAAGGATTGAAGAAGCTGAAGTGGTTTGTAATT
CCATAAGAAGAACAACAATATCAACCAACCTGACCCCTCAGAGCTCCAAGGTTCTAAACCACCATCCCAA
GACTATACAGGGATGGAACTATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTCAGGCATCAATG
GGAGGAGAGGCCCTTAGTCCTGCCAAGGCTCAATGCTCTAGTGTAGGAGAATGTCAGGGTGGGGGAGAGG
TAGGAAGAAGTGGGTGGGTTGGTAGGGGAGTACCCTCAAAAAAGCAGGGAGAGATTGTGGGTTTCTGGAG
GGGAACCAGGAATAGGGATAACATTTGAAATGTAAATTAAAAATCCAAT
>lcl|chr2:31329164-31331363 FRAGMENT 1140 -> 1202
CTCATCCTCCTGCTTCGGGCTCCTGAAGACTGAGATCACAGATCTGCACGACCACGCCTAGTT
>lcl|chr2:31329164-31331363 FRAGMENT 1337 -> 1222
GCTTTTAGTCTCAGCACTTGGGAGGCAGAGGCAGGTGATAGCGGAGCATCTGAGGCCAGCCTGGTCTACA
ATAGTGAGATCCAGGACAGCCAGGGCTACACAGTGAGATCCTGTTT
>lcl|chr2:31329164-31331363 FRAGMENT 1379 -> 1338
ACCACATTTAAAAAAAAAATCTGCCAGGTGTGAGAGAATGCT
>lcl|chr2:31329164-31331363 FRAGMENT 1442 -> 1380
TGGGGATTTGGGATACAAGAAACTTGCCTAACATGCACTGAGGCCCTGGGTTCCATCCCCAGC
>lcl|chr2:31329164-31331363 FRAGMENT 1815 -> 1867
AGAGGCCGGAGAGTGAGAAGGGTGGGTGGGGGGCAGAGGAGGGTGAGGAGAGG
>lcl|chr3_random:411470-413669 FRAGMENT 1549 -> 1680
TGTGGATGCCCCATCCCTGGAGGCATTCGAGGCCAGGCTGGACGTGGCTCTGGGCAGCCTGGGCTGCTGG
TTGGCGACCCTGCACATAGCAGGGGGTTGGAACTGGATGAGCACTGTGGTCCTATCCCCAGG
>mdo.U11.3.scaffold_13440 FRAGMENT 420 -> 651
AGAGCACTGACCCTGGAGTAAGGAAAACTGAGTTCAAATAGTTCATAATTCAAATGAGTTCATAGCTCAC
TAGCTATGTGATCTGGGCAAATCCTAAAACTTTTGCTGCCCTCAACTCTAAAACAGGGATAATAGTAATA
TCTATCTAATAGAGTTGTGAGGTTCAGATGAGACGATATTTGTCATATGCTTAGAATAGAGCCTGACACA
TATTAGTTATTTAATAAATATT
>mdo.U11.3.scaffold_13440 FRAGMENT 687 -> 652
GAACCCAGAGTAGAATAGAAAGGAGTTAAAGAAATA
>mdo.U11.3.scaffold_13440 FRAGMENT 1008 -> 893
TTTATGTATTGTTTTACCCCCATTAAAATGTAGTTCCTTGAGGGCAAGGAAACTTACTTGTATTTGTATC
CCCAGCTTTTATCACAATGTTTGGCATAAGGTAAATGCCTAATAGA
>mmu.U11.1.chr4 FRAGMENT 191 -> 21
CCGAGTGTGATGGCTCATGCCTGTAAATCAGGAGGCTGACACAGGAGCATTACAGCAAGTTGAGTTCCAA
GCCAGCCTTGGCTACATGACACCCCACTTCAACAAAAGCCAAAACACTGAACCGAGTATAATGGCACATG
TAATCTTACATGGGAGGCTGCTACAGGATGA
>mmu.U11.1.chr4 FRAGMENT 363 -> 229
GCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGTAGAGGCAGGTGGATCTCTGAGTTGG
AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG
>mmu.U11.1.chr4 FRAGMENT 540 -> 573
CAGAGACCTGAATTCGGTTCCTAGCACCCATATG
>mmu.U11.1.chr4 FRAGMENT 1298 -> 1430
CGGGCATGGTGGTCCACGCCTTTAATCCCAGAGTTTGGGAGGCAGACGCAGGTGGTTTTCTGAGTTCGAG
GCCATCCTGCTCTTCAATGTTAGTTCCAGGACAGCCAGGGTTATACAAAGAAACCCTGTCTCG
>mmu.U11.1.chr4 FRAGMENT 1577 -> 1763
GGGCTGGTGAGATGGCTCAGCGGTTAAGATTGCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATTCCAG
CAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTGATTCTCTCTTCTGGAGTGTCTGAAGACAGC
TACAGTGTACTTACATATAATAAATAAATAAATATTTTAAAAAAAAA
>mmu.U11.1.chr4 FRAGMENT 1867 -> 1775
GGGCTAGAGAGATGGCTCATTGGTTAAGAGCACTGGCTGTTCTTTAAGAGTCCCAAATTTTATCCCAGGT
ACCTACAGGGTGGCTCATTACCA
>mmu.U11.1.chr4 FRAGMENT 2022 -> 2051
TTCAATATAAATTTCTTTTCTTTTCTTTTC
>mmu.U11.1.chr4 FRAGMENT 2191 -> 2052
CTGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAACCATCTGAATGGGCTCTGATGCCCTCTTCTGG
TGTATCAGAAGACAGTGACAGTGTACTTACATAAAATAAACAAATCTTAAAAAAAGAAAAGAAAAGAAAA
>mmu.U11.2.chrX FRAGMENT 334 -> 464
GCCAGGTGTGTTGATAACTGCTTGCAATCCCGGCACTGAGGAGATACAACCAGAAGGATAAGATGTTCTT
AGACACATAATGAGTTCAAGGGCAGCCTGGGATACTTAAGATCCTACATCAAGGGAAAAAA
>mmu.U11.2.chrX FRAGMENT 536 -> 570
CTTTTTTTTCTTTTTCTTTTTCTTTTCTTTTTTTC
>mmu.U11.2.chrX FRAGMENT 605 -> 571
AAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAAAAA
>mmu.U11.2.chrX FRAGMENT 746 -> 614
CTGGGCGTGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTC
>mmu.U11.2.chrX FRAGMENT 820 -> 750
CGGTGCTTTCTAGTGGAACTTTCTGTGATGGTGGAAATGCTCTGTAGCTATATTGTTCAAGAAAATAGCC
A
>mmu.U11.2.chrX FRAGMENT 1176 -> 1250
GAATGGTTAAATAAAATAAGGCATATTCACTAAATGGAATATAACATAAAAGTTTAAGGGAACAAACTAG
ATATA
>mmu.U11.2.chrX FRAGMENT 1570 -> 1441
GCCGGGCATGGTGGTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGC
TAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTC
>mmu.U11.2.chrX FRAGMENT 1579 -> 1910
ATAGTTTTAAAAGATGAGACTTCTAGGAGGTGACCAGGTTGGGAGGCTTTTGCCTTCAAAAATGAACTAG
AGCCATCATCATGACAGTCTCTTTGACATTATGGGAGTGGCAATCTTACCAAGGCTGAGTGCCCTCCCTG
TCTCTCTTGAGTGCCCTGTTGCTTTGTGACCCCCTTCTGCCATCTTATGATGCAACAAGAAGGCCCTCTC
CAGATGCAACCTTTGATCTGTGATGTTTCAGCCTTCAGAACTGTGAGGCAAAAACTTGTACTATTTAGAA
ATTACTAAAGCTGTGATATTCTTATATAAGCAACAGAGAATGTACTAAGACA
>mmu.U11.2.chrX FRAGMENT 2200 -> 1951
GTCTGTTGTCCTGTCACATCTGCAGCTTCCTACAAGAAGCCACTACCTGCTGAGCAGCTGAGCTTGCTTT
CCTGACAGATCCTGGCAAAGTGGGAAATAGGTTCCCCCCTTTAAATTCAGACTTAAGAATTAAACATTGG
GCCTTGGTCAGAAACTTTGTCTTGGTCTCATTCCTCTCTTGTCTCTCCTTCCCATCCATCCCCAGCTCTC
CTTTCAGGTACCCAGTTCTCTGTGGCTGCTGGCCTCTACA
>mmu.U11.3.chr18 FRAGMENT 2 -> 36
GAGGGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGA
>mmu.U11.3.chr18 FRAGMENT 193 -> 52
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCCTC
CTCTTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CT
>mmu.U11.3.chr18 FRAGMENT 321 -> 194
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCCTCTTCCTC
CTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTT
>mmu.U11.3.chr18 FRAGMENT 322 -> 386
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTTGCGATGACAGAATGAAGAAG
>mmu.U11.3.chr18 FRAGMENT 622 -> 728
TGGAGAGAAGTTGCAGTGGTCAAGGCTACGTGTTGCTCTTCCTGAGGAACTGGGTTCAGTTCCCAGGAAT
CATATGATGGCTCATACTTGTTCAAAACTCAAGCTCC
>mmu.U11.3.chr18 FRAGMENT 732 -> 1005
CTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATA
TGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGATCCATTGGACTTGCAAACTTTATATGC
CCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGG
GGGACCTTTGGGATATCATTGAAAATGTAAACGAGGAAAATTCCTAATTAAAAAAAAAAAAAAA
>mmu.U11.3.chr18 FRAGMENT 1904 -> 1722
CAATGGGAGGAGAGGCCCTTGGTCCTGAGAAGGCTCTATGACCCAGTGTAGGAAATGCCAGGGTCAAGAA
GCAGGAGTGGGTGGGTTGGTGAGCAAGGGGAGGGGAGAAGGGATAGGGGGCTTTTGGAGGGGAAACCAGG
AAAGAGGATAACATTTGAAATGTAAATAAAGAAAATATCTAAT
>mmu.U11.3.chr18 FRAGMENT 1905 -> 2087
ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGAGTTTGAAACCCCATAGGAGGAACAGCAATATG
AAATGGCCAGTACCTCTAGAGCTCCCAGGGAATAAACCACTAAGCAAAGAACACACATGGTGGGACTCAT
GACTCCAGCTGCATATGTAGCAGAGGATGACCTAGTCAGTCAT
>mmu.U11.4.chr14 FRAGMENT 59 -> 1
GGTGGCACGCCTTTAATCCCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTAGAGACCAG
>mmu.U11.4.chr14 FRAGMENT 326 -> 212
CAGCTCCTTTCACCCTCCTAGCCGTCCACATCTGAGTCTCGCCCTCTCACCTGGCCTAGGGTCGTCAGGG
TCCTGAAGCCCCCTGTCTAGGCAGAACACAGCCTCATCTGCCTCT
>mmu.U11.4.chr14 FRAGMENT 1243 -> 1343
TTCCTGGGATTGGAGTGTAGCTCAGAGGTCTAATGCATGCTTAACATACATAAGGCCTTGGATCTGCTCC
CCAGGATAAGAGGGAAAAAGGAAGAAAGAAA
>mmu.U11.4.chr14 FRAGMENT 1936 -> 2030
CACAGGAGCTTATTTCTGTAATTCCAGCACACAGGAAGATGGCAAGTTCAAGGCCTGCCTGTGCTATGCA
GCAAGATGCTTTCTCAAAAATAAGA
>mmu.U11.4.chr14 FRAGMENT 2031 -> 2139
CAGGTATGGTGGTACATGCCTGTTTTCCCAGAACTTGGGAGCCTGAGGCAGGAGGATTGTCAAGCATTCA
GGGCCAGGTAGGGCTCCATAGCGAGATTCTGGCCTGCTT
>mmu.U11.4.chr14 FRAGMENT 2153 -> 2201
CTGGAGAGATGGATCAGCACCTAAGAGCACTGACTGCTCTTTCGAATGT
>mmu.U11.5.chrX FRAGMENT 128 -> 213
CTTATTCTTGGAGTTTCAGATGCTGTAGCTGTAAGCAATAAAGTATGTTCCATGAAGTACTCATTTTTAA
CTGTTTTGTTATAGCA
>mmu.U11.5.chrX FRAGMENT 387 -> 984
AAAAGGTAGATTTTCAGAACCAAATAGCCCTATTAAAAATGAGGTACAGATCTAAACAAAGAATTCTCAT
CTGAGACATATTGATGAACAAGAAGCACCTAAAGAAATGTCCAACATCCTTAGTCATCAGGGAAATTCAA
ATCAAAACAATCCTGAGATTCCACCTCATACCATTCAGAATGGCTAAGATTAAAAGTTCAGGTGACAACA
GATGCTGGTGAGGATGTGGAGAAAGAGGTACACTCCTCCATTGCTGGTGGGATTGCAAGCTAGTACAACC
ACCCTGAAAATCAGTTTGGTGGTTCCTCAGAAAATTGGACCCGGCAATACCACTCCTGGGCATATACCCA
GAAAATGCTCCAACATGCAATAAAGACACATGCTCCACTATGTTCATAGCAGCCATATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGGTACAGAAAATGTGGTACATTTACACAAT
GGACTACTACTCAGCTATTAAAAACAATGACTTCATGCAATTCTTAGGCAAATGGACAGAATTATAAAAT
ATCCTGAGTGAGGTAACCCAGTCACAAAAGAAAACACA
>mmu.U11.5.chrX FRAGMENT 1226 -> 1146
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTCTTTTTTAAAA
AATCTTTATTT
>mmu.U11.5.chrX FRAGMENT 1227 -> 2006
AAAAGAAAACACATGGTATGTACTCACTGTTAAGTGGATATTAGCCCAAAAGCTCCAAATACTCAAGATA
CAATCCACAGACCACATGAAGCTCAACAAAAAGATCAAAGTGTGGATGTTTCAGTCCTTCTTAGAAGCAA
GAACAAAATACTCACAGGAGGAAATAAGGAGACAAAGTGTGTAGCAGAGAATGAAGGAAAGGCCACTCAG
AGACTTCGCAACCTGGGGATCCATCCCATATACTGTTACCAAACCCAGACTCTATTGAGGATGGCAAGAA
GTACTTGCTGACAGTATCCTGGTATAGCTGTCCCCTGGGAAGCTCTGCCAGAGCCTGACATATACAGAAG
TGTATGCTCACAGCCAACCATTGGACTGAGCATGGGGTTCCCAATAGAGGAGTTAGAGAAAGGACTGAAG
GAGCTAAAGGGATTTGGAACCCCATAAGAAGAACAACAGTATCAACCAACCAGACTCCCCAGAGCTCCTA
GGGATTAAACCAACCAAAGAGTACACATGGAGGGACCTATGGCTCCAGCTGCATATGTAGCAGAGGATGG
CCTTGTCAGGCATCAATGGAGGGGGGGGGGAGGAGGAGTCTTTGGTCCTGTGAAGGCTCAATGCCCCATG
TAGGGGAATTCCACGGTGGGGAGGCTGGAGTGGGTGGGTGGCAGAGAACCCTCATAGAAGCAGGGGGAAG
GGAGATGAGGTAGGAGATTTCCAGAGGGGAAACCGGGAAAGGTTAGAACATTTGAAATGTAAGTAAGTAA
AATATCCAAT
>mmu.U11.5.chrX FRAGMENT 2092 -> 2051
GCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGA
>mmu.U11.5.chrX FRAGMENT 2199 -> 2115
AACTCACACAAATCAATAGTACAAAAACGAATCATTCAATTTGCGAATGGACAAAAGGCATCTCCCAAAA
GTTGACAGAGAAATG
>mmu.U11.6.chr11 FRAGMENT 2 -> 93
CCTGCAATCCCAATTGGGAGGAGGCATTCGAGGTCAAGGCCAACCTTGGCTACATCGTAAGTTTGAGGCT
ACATGAGACCCTGCCTCAAAAA
>mmu.U11.7.chr15 FRAGMENT 157 -> 181
CCTCCCTCCCTCCCTCCCTCCCTCC
>mmu.U11.7.chr15 FRAGMENT 233 -> 182
GGAGAGAGGGGGGGGAAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGGAG
>mmu.U11.7.chr15 FRAGMENT 2114 -> 1850
ACTCATAAATAAGACTCTCAACTCTCATCATAGAAGTTTTTTTCTTTAGTAGATGTTGATTAACACAGAG
ACACACAAGTGGCCACAGTTGAGAGAGAGAGACTTAGTGTTCAGTCCCCAGTGGGATGTCTATGTCACAC
TCCCCCTGCAAGGCTCAGAGATTGTGGTAGAAGAGGAGGCAGAAAGACTGTAAGAGCCAGAGGTAGTAGA
TAGCTACAGGATAATATTTTTTGGACAAGTCAGGTCACTTGAACACATGAACTCA
>mmu.U11.8.chr12 FRAGMENT 1 -> 837
AGAGAATGTAGTACATTTGCACAATGGATTACTACTCAGCTATTAAATCAATGGATTTATGAAATTCTTA
GGCAAATGGATGAATCTGGAGGCTATCATCCTGAGTGAGGTAACACAATCACCAAAGAAACCACATGATA
TGCAATCACTGATAAGTGGTTATTATCTCAGAAACTCAGAATATCCAAGATACATTTTGCAAAACACATG
AAACTCAAGAAGAAGGAAGACAAAAGAGTGGATATTTTGATCCTTCTTAGAAGGGGGAAAAATACCCATA
GAAGGAGTTACCGAGACAAATTTTGGAGCTGATACAGAAAGATGGACCATCCAGAGACTGCCCAACCTGG
GGATCCATTCCATTATCAGCCACTAAACACATATGCCAGCAATAGTTTGCTGAAAGTACCCTGATAAAGC
TGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAATTATAGAAGTGGATGCTCACAATCATCTATTGGATGG
AGCACAGGGTCCCCAGGGGAGGAGCTAGAGAAAGTACCCTAGGAGCTGAAAGGGTCTGCAACCCTATAGG
AGGACCAACAATATGAACTAACCAGTACTCCCAGAGCTCGTGTCTCTAGCTGCACATGTAGCAGAAGATG
GCCTTGTTGGCCATTCTTGTGAAGAGAGGCCCTTTGGTCTTGCAAACTTTATATGTATCAGTACAGGGGA
ATGCCAGGGCCAGGAATTGGGAGTGGGTAAGTTGGGGAGCAGGACGGGGGGAGGGTATAGGGGACTTTCG
GGATAGCATTTTAAATGTAAATGAAGAAAATATCTAATAAAAATGTTATAAAACAAAACAAAAATCC
>mmu.U11.8.chr12 FRAGMENT 1017 -> 1079
GGGTCTGGCATGGCTGTGGAAGGGGGGCTCTGACACAGTTCGTGTTCCTGGAGCATCCCCAGC
>mmu.U11.8.chr12 FRAGMENT 1551 -> 1751
ATAGCTTAGTCAGCCATCATTAAGAGAGGCCCATTGGTCTTATGAAGATTATATGCCCCACACAGGGGAA
CACCAGGGCCAGGAAATTGGAGTGGGTGGGTTTGGGAGCTGGGTGGGGGGATGGTATAGGGGACTTTCAG
GATAGCATTTGAAATGTAAAATCTAGAAAGTATCTAATAAAATGTTTTGAAAAAAACAGAA
>mmu.U11.8.chr12 FRAGMENT 1989 -> 2043
CTGAAAGCTTTACATGCATAAAATTAAAAACTTTGTAAAAATTCATTTCTGTTCT
>mmu.U11.9.chrUn_random FRAGMENT 1 -> 809
AATGTGGTACATTTACACAATGGATTACTATTCAGCTATTAAATCAATGGATTTATGAAATTCTTAAGGC
AAATGGATGAATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACCAAAGAACCCACATGATATGC
AATCACTGATAAGTGGTTATTATCCCAGAAACTCAGAATATCCAAGATACAGTTTGCAAGACACATGAAA
CTCAAGAATAAGGAAGACAAAAGAGTGGATATTTTGAGCCTTCTTAGAAGGGGTAACAAAATACCCATAG
AAGGAGTTACAGAGACAAAGTTTGGAGCTGATACAGAAGGATGGACCATCCAGAGACTGCCCCACCTGGG
GATCCATCCCATTATCAGCCACCAAACACATATGCCAGCAATAGTTTGCTGAAAGGACCCTGATATAGCT
GTCTCATGTGAGGCTATGCCAGTGCCTGGAAATTATAGAAGTGAATGCTCACAGTCATCTATTGGATGGA
ACACAGGGTCCCCAGGGGAGGTGCTAGAGAAAGTACCCTAGGAGCTGAAGGGGTCTGCAACCCTATAGAA
GGACCAACAATATGAACTAACCAATACTCCCAGAGCTCATGTCTCTAGCTGCATATGTAGCAGAAGATGG
CTTTGTTGGCCGAATCCACGGGAAGAGTGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTAGAGGGG
AACGTCAGGGCCAGGAATTGGGAGAGGGTGGGTAGGGAAGCAGGACCGGGGGAGGGTATAGGGGACTTTT
GGGATAGCATTTTAAACGTAAATGAAGAAAATATCTAAT
>mmu.U11.9.chrUn_random FRAGMENT 1017 -> 1079
GGGTCTGGCATGGCTGTGGAAGGGGGGCTCTGACACAGTTCATGCTCCTGGAGCATCCCCAGC
>mmu.U11.9.chrUn_random FRAGMENT 1547 -> 1727
ATGGCTTAGTCACTCATCATTAGGAGAGGCCTTGGGTCTTGCGAAGATTATATGCCCCACACAGGAGAAT
GCCAGGGCCAGGAAAATGGGAGTGGGTGGGTTTGGGAGCAGGGTTGGGGGGTGGTATAGAGGACTTTCAG
GATAGCATTTGTAATGTAAAATGAAGAAATATCTAATAAAA
>mmu.U11.9.chrUn_random FRAGMENT 1984 -> 2038
CTGAAGGATTTACATGCATAAAATTAAAAACTTTGTAAAAATTCATTTCTGTTCT
>ptr.U11.1.chr1 FRAGMENT 81 -> 5
GGACGGGTGCTGTGGGTCATGCCTGTAATCCCAACATTTTGAGAGCCCAGGAGTTTGAGACCACAATGGG
CAACATA
>ptr.U11.1.chr1 FRAGMENT 83 -> 109
TCATTATCCATTAAAAAAATGGGAACA
>ptr.U11.1.chr1 FRAGMENT 110 -> 402
GGCTGGGCACGATGGCTCACGCCTATAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACAAAGTC
AGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGG
GCATGGTGGCGGGGGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGA
GGTGGAGCTTGCGGTGAGCCGAGATCGCGCCACTGCACTGCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAA
>ptr.U11.1.chr1 FRAGMENT 877 -> 827
GGGAATGTGCTGGCGGGCACCGAGGGAGTGGCGGGGAAGAGCGGCTGCGCG
>ptr.U11.1.chr1 FRAGMENT 1878 -> 2180
CCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTC
AGGGGTTGGAGACCAGCCTAGCCAACAGGGTGAAACCCTGTCGCTCTTAAAAATACAAAAATTAGCCAGG
CCGGGTGTCAGGCGTTTGTAATCCCAGTTACTTGGGAGGTTGAGGCAGGAGAATTGTTTGCACCGCCAGG
CGGTGTTCCTGTGAGCCGAGATAGTGATCCTGCACTCCAGCCTGGGCAACAGAGGGAGATTCTGTCTCAA
AAAAAAAAAAAAAAAAAAAAAAA
>ptr.U11.2.chr7 FRAGMENT 1 -> 180
AAAATACAAAATTAGCCAGATGTGGTGGTGCACACCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCAGGAGGCATAGAGTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCA
ACAAGAGCAAAACAACTTCTCAAAAAAAGAAAAAAAAAAA
>ptr.U11.2.chr7 FRAGMENT 181 -> 403
GTTTAAAATACATGCTGGATTTTGAAGAGTTGTATGAGGAAAAGGATATAAATTATCTTGTCAATTTTTA
ATATTGATTTCACATTGAAATGACATATTGCATATGTTATACTAAATAAGTTATGTTATTAAAATTAATT
TCTCCTTTTTTTTTTTAGTGTGGCTACCAGGAAATTCAGAATTACATATGTGACTTGCATTGTGTTTTTA
TTGAGTAGCGTTG
>ptr.U11.2.chr7 FRAGMENT 497 -> 579
GTGCCAACCCTGTTCCATGTTGCAGCTGCCTGGGGGGATGTGTGAGGACTGTGAGACCATACCTTGGCTG
AGCAGGCAGGAAT
>ptr.U11.2.chr7 FRAGMENT 1385 -> 1192
CCACTTTTTGTCTTTTATAGTGATTTTTACTGTATCTTTTCTGTACTTGTACACACAGGATGCTTGCCAT
TGTGTTATGGTCACCTACATCATTTAAACCAGTAAGATAGCATGCAGTCGCATAGTGTGGAAACAGCATA
TATCCTACCAGATAGCCCTGAGGTGGGGCAGGATCTACTACGGAGGTTTAGTGT
>ptr.U11.2.chr7 FRAGMENT 1386 -> 1510
GGCCAGGTGCAGGGGCTCACACCTGTAATTCCAACATTTTGGGAGGCTGAGGCAGGAGTATCTCTTGAGG
CCAGGAATTCAAGACCAACCTGGTCAACATAGTGAGACCCCATCTCTACGAATAA
>ptr.U11.2.chr7 FRAGMENT 1697 -> 1778
TCTGCTTCTTCACTGCTGAATCCCCAGCACCAGGAAAAATGATTGGAACCATTAGTTGCTAAATAAGTAT
TTGTTAAATGAA
>ptr.U11.2.chr7 FRAGMENT 1960 -> 1897
TTGGCTTAGAGTCGGAAAGACACCAAAATTTGGAAGGAAGTTAAAAAACGAGGAAGGGAGAGAA
>ptr.U11.3.chr8 FRAGMENT 298 -> 2
GGCTGGGCAGAGGGGCTCACCCCTGTAATCCCAGCCCTTTGGGAGGCCAAGGTGGGCGGATCACTTGAGG
TCAGGAGTTTGAGACAAGTCTGGCTAACATGGTGAAACCCTGTTTCGACTAAAAATACAAAAATCAGCCG
GGTATGGTGGCGCATGCCTATAATCCCAGCTAATAGGGAGGCTGAGGCAGGAGAACTGCTTGAACCTGGG
AGGCAGAGGCTGCAGTGAGCTGAGATAGTGCCACTGCACTCCAGCCTGGGCAACAGATCAAGACCTTGTC
TCAAAAAAATGAATAAA
>ptr.U11.3.chr8 FRAGMENT 376 -> 300
CAGGGGTGTCCAATCTTTTGGCTTCCCTGGGCCACACTGGAAGAACTGTCTTTGGCCAACATAAAATATG
CTAACAC
>ptr.U11.3.chr8 FRAGMENT 889 -> 583
GGCCGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGGTGGGTGGATCACCTGAGG
TCGGGAGTTAGAGACCAGCCTGACCAACACAGAGAAACCCTGTCTCTACTAAAAACACAAAATTAGTTGG
GCGTGGTGGCGCATGCCTGTAAACCCAGCTACTCGGGAGGCTAAGGCAGGAGAATTGTTTGAATCCAGGA
GGCAGGGGTTGCAGTGAGCCAAGATCACACCATTTCTCTCCAGGCTGGGCGACAAGAGCAAAACTCTGTC
TCAAAAAAAAAACAAAAACAAAAACAA
>ptr.U11.3.chr8 FRAGMENT 1459 -> 1160
GGTTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGACGCAGGCAGATCAGGAGGTC
AGGAGATTGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCAG
GCGTGGTGGCAGGCACCTATAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGA
GGCAGAGGTTGTAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGTTGACAGAGCAAGACTCCGTCTC
AAAAAAAAAAAAAAAAAAAA
>ptr.U11.3.chr8 FRAGMENT 1759 -> 1465
GCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACTTGAGGC
CAAGAGTTTGAGATTAGCCTCGCCAACATGGTGAAACCTCATCTGTATTAAAAATCCAAAAATTAGCTGG
TGTGGTGGGACACCTATAGTCCCAGCTACTTGGCAGGCTGAGGTACTAGAATCACTTGACCCCAGGAGGA
GGAGGTGCAGTGAGCCGAAATCACGCCACTGCACTCCAGCCTGGTGACAGAGCAAGACTCTGTCTCCAAA
AAAAAAAAAAAAAAA
>ptr.U11.3.chr8 FRAGMENT 1956 -> 1808
CATTTCTTGTCTTTAATAAGAGATATTTACCATATGTTTTCTATACTTAAGATACACAAAATGTTTGTCC
TTGTGTTATAATCACCCACAACATTTAATACAACAAACCAATCACATAACCTAGAAACAGTGCATCACAC
CACACAGCC
>ptr.U11.3.chr8 FRAGMENT 1958 -> 2199
GGCTAGGTGCGGTGGTGGCTCATGCCTGTAATCCCAGCACTTCGGGAGGCGGGGTGGGAGAATCGCTTCA
AGCCCGGGAGGTCGCAGCTGCAATGACCCATGAGTGGTTCTGTACTCCAGCTTGGGCAACGGAGCAGGAC
CATGTCTCAAAAAAAAAAAAAAAAGGCCGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGAAGG
CAGAGGCGGGCAGATCATTTGAAGTCAGGAGT
>ptr.U11.4.chr9 FRAGMENT 95 -> 24
TTTTAAGTATCCCCCTCAGAATGCAAACTGCACCAGAATACGGGTTTAGTTTGTCTTTGTCACCACTGTA
TC
>ptr.U11.4.chr9 FRAGMENT 360 -> 96
ACTCTCTGCCCCACTCCATTAACTCTAACAACATTGACTTTCTGTGGTTCCTTGAACTCAAACTCATTTT
CATCTCAGGGGCTTGGCTACCTTCTTTATTTTGCTTAGGATGCTCTTCCTAGACCTTTGCACATCTGTCT
CTTCTCATTATTCAGATGTCTGCTTGAATGTCACCTGCTTATCAAGGACTTCCTTGCTACTCTGTCTACA
GTACAAGTACATCTCCCCCACTCAAATCACTTTGTTCTTTTCTTAGCACTTATCA
>ptr.U11.4.chr9 FRAGMENT 483 -> 384
TCTCCATACAGCAGAGTGATTTTTAAAAGTATAAGTCATATGACGTTTTGTGTTTTTTACTTAAAACTCT
GCAAAGATTTCCCATTGCAATAAGAATAAA
>ptr.U11.4.chr9 FRAGMENT 609 -> 1537
CAACAAGCAAAAAACAAATATTCCAATTTAAAAATGGGCAAAGGACATGAACAGATACTTCTCAAAACAA
GACAGAAAAATGGCCAACAAACATGAAAAAATGCTCATCATCACTAATCATCAGAGAAATGCAAATCAAA
ACCACAATGAGGTACCATCTCACACCAGTCACAATAACTATTATTAAAAAGTGAAAAAAAATATCAGATG
CTGGCGAGGCTGTGGAATGCTTGTACCCTGCTGGTGGGAATGCAAATTAGTTCAGCCACTGTGGAATGCA
GTTTGGATATTTCTCTAAGAACTTAAAACAGAACTACCATCTGACCCAGCAATTCCATTACTGGGTATAT
ACCCAAAGGAATATAAATCATTCTACCAAAATGATACATGCAAAAAAGGGCTTCTGTCATGAGTGGCACA
CGTAGGGCAACTCGATTGCTCTGCATGCGGAATCGACATCAAAATGATACATGCACACATATGTTCATCT
CAGCACTATTCACAATAGCAAAGGCATAGAATCAACCTAGGTGCCCATCAACAATGGTAGATTGGATAAA
TAAAATGTGGTACATATACATCATAGAATACTACACAGCCATAAAAAAGAGCAATATGATATCCTTTGCA
GGAACATGGATGCATCTAGAGGCCATTGTCCTAAGTGAGTTAATGCAGAAACAGAAAACCAAATACTGCA
TGTTCTCACTTATAAGTAGGAGCTAAACAATGAGTACACATGGGCATAAAATTGGAACAATAGACACTGG
GGACTCCCAAAAGTTGGGGGAGGGGTGGACATGGGCTGAAAAACCATTGGATACTATGCTCACTACCTGG
GTGACAGGATCATCTATACCTCAGACCTCAACATCACACAATACACTTGTAACAAACCTGCACATGTACC
CTCTGAATCCAAAATGAAA
>ptr.U11.4.chr9 FRAGMENT 1715 -> 1833
TGTTATGGGCTAAATTGTGTCCACCCCCAAAACTCTTATGTTGAAGTCCTAACCCCCATACCTCAGAATG
TCACTCTATTTGAAAATAGGTTCTTTAAAGAGTTAATTCAGTTAAAACG
>ptr.U11.4.chr9 FRAGMENT 1966 -> 2117
AGAGAATAAGTAGACATGTCGTGTGTGACTTCCAAAAATTCTCCCTAAGGGGAAGGCACTACACTTTTGT
CCTCCTTACTTCCCTCTTCTTGCTGCTTCAAATGCAGATGTAATGACTGAAGCTCTGGCAGCCACCCTGG
GGCAAAAGGTAA
>ptr.U11.4.chr9 FRAGMENT 2160 -> 2200
GGCAGGGCAAGGTGGCTCAGGCCGATAGTCCCAGCACTTTG
>ptr.U11.5.chr19_random FRAGMENT 1839 -> 1771
AAATCTATCACAAATAAAGATTTATTGTAAGATGATTCTGATGACTAATGGAAGCTCTGAAGGATTAAT
>ptr.U11.5.chr19_random FRAGMENT 2199 -> 2098
TGAACCTGGGAGACAGAGGTTGCAGTGAGCCGAGATTGTGCCATGGCACTCCAGCCTGGTCAACAAGAAC
AAAACTCCGTCTCAAAATAAATAAATAAATAA
>ptr.U11.6.chr15 FRAGMENT 1513 -> 1114
TGATATGGTTTGGATCTGTGTCGCCGCCCAAAATTTCATCCTTGAATTGTAATCCCCAATGTTGAAGGTG
GAGCCTGCTGGGAGGCATGGGTCATGGGAGTGGATTTCCCCATTGGTGCTGTTCTCATGATAGTGAGTGA
GTTCTTATGAGATCCAGTTGTTTAAAAGCATGTAGTACGTCTCCCCTCTCTTGGTCTTGCTCCTGCTCCA
GCCGTGTAAGAAGAGCTGCTTCTCCTTTGCCTTCCGCCATGAATGTAAAGTTCCTGAAACCTTCCCAGAA
GCTGAACAGAAGCTGCTGTGCTTCTTGTACAGCCTGCAGAACCATGAGCTGATTAAACCTTCTTTTCTTA
TAAATTACGCAGTCTCAGGTATTTATAGCGTGTGAGAATGGACTAATACA
>ptr.U11.6.chr15 FRAGMENT 1535 -> 1596
GCCCTTACTCATAAAATAAATAAAATAAGTAAATAAATAAATAAATAAATAAGCCCTTTTTG
>ptr.U11.7.chr22 FRAGMENT 420 -> 301
GGCTCTAGCACGAACTGTACTGCTAATTAGCGGGGTTCTTTGTACAAGTCACTTAAGCTCCTTGGGCTTC
ATGTTGCTCCTCTCAGAAGAGAAGAATCTGGACTGGACGGCCTCTTAGGT
>ptr.U11.7.chr22 FRAGMENT 1334 -> 715
ACTTTGAGACCATATCCGTGGACTTAGTCAAATTTTCCAGAACTTTTGTTGAGAAGCAGATGGGTTCATT
AGACGACTAACCCAAGATCCACAAGATCCAGTGGAATAGGAATTAATTACATAGAATTAAATGAATTGGT
GAGGGATGACAGTAATTTTTGTCTGGAATACTGCTGATGTTATTTTAATGTCTTATTTTCCTTATATATA
AGGAAGCCCTTTTTGCTTTCTCTTAAGCTTTTCATACATCATAATAATGTTGTAGATTCTGCTTTTGTAA
GCTGAAATGAATCACTTGTAAATGACCTCTTATTCTCCCTGCCTAATTCTTCTGGAGTTCAAAAATTCTT
ATTGAATCTGCTTATTAAATCAGAATACATATATATTTTTTGGCAATATACTTATTTCCATAACTTCAAC
AAGAATCTGTCTTCCTTCTTGCCAGGGCATAATTGAAAACATTGGTTATGTAACCTAGGTCCTGCCTGCC
ATGTCCTATTAAGAATGATGTTCATTTAATCAGATATGACCACGTGCTTTTAAAGAACTAAGGTAGACTT
TATGGAACCAATGCTTACTTACAAAGCCCTCTTGGGAAAACTGGCCTGGTCCTTGGCCTA
>ptr.U11.7.chr22 FRAGMENT 1637 -> 1335
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTC
AGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCGTCTCTACTAAAAAACACAAAAAATTAGCCGG
GCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCGGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAGAAAAGA
>ptr.U11.7.chr22 FRAGMENT 1843 -> 1730
CCATTTTAAGTTTTTTGTCATCTACAGATATTTTTGTTAGCATGTTTTGCTTTGATGCTTCCCTGAAGTT
ATTTGTAATGAGCTACAAGCAAAAATGCTTCATCTTTCATGAAG
>ptr.U11.9.chr12_random FRAGMENT 723 -> 4
CTGCTATCCAAAGTACACAAAGAACCCTTCGACAATAAGAAAACAATTCAATTAAAAATGAGCAAAGATC
GGAACAGACATCTCACCAAAGGCATACAGATGGCAAATAAACATATGAAAAGATGCTCAACATAATATGT
CATTAGGGAGTTGCAAATTAGAATAACAATGAGATACCACTACACACCTATTATAATGGCTAAAGTCCCA
AACACTGGCAACACCAAATGCTGAAGTGGCTGAAGAGCAATAGAATTCTCATTCATTGCTGGTGGGAATG
CAAAATGATACACACACATTGGAAGGCAGTTTGGGAGTTTCTTGCAAAAGCTGAACATACTCTTACATAT
ACATCCAGCGATCACCCTCAGGAATTTACCCAAATGAACTGAAAATTTATGTTCCCCCCTGCACATAAAT
GTTTATAGCACCTTTATTCAAAAAATTGCAAAAAACTTGAACCAAGATATCCTTCAGCAGGTAAAGGTTA
AATAAATAGTGGTTCACCCAGACAATGAAATATTATTCACGGTTAAAAAACGATCAAGCTATCAAGTCAT
GAAGGAACCTTAAATGTGTAATGCTAAGTGAAAGAAGCCAGTCTGAAAAGGCTATATACTATATGATTCC
AGTATATGACATTCTGGAAAAGGCAAACTTGTGGAGACAGTGAAAAGATCAGAGGTTGCCCGGGTTCCTG
GGGAGGGGTGAGGGATGAAT
>ptr.U11.9.chr12_random FRAGMENT 995 -> 724
TAAAAAAAAATTCAAAATAGATTCTAGATCTAAATATAAAGGCAAAACTATAAAAATTCTAGAAGACAAC
ACAGAAGAAAATCTAGGTGACCTTGGATTTGGTGATGACATTTTAAATACAACACCAAAAGTATGATACA
TAAAAGAAAAAAAATGACAAATTGAGTTTCATTAAAATTAAAAACTTCTCTGCCAAAGACATTGTTGAGA
GAACGAAAAGACGAGCCACAGACTAGGAGAAAATATTAGCAGAACACGTATCTGATAAAGGA
>ptr.U11.9.chr12_random FRAGMENT 1111 -> 996
CCTGCAGTCCCAGTTACTTGGTGAGAGGATTGCTTGTGCCCAGTAGGTCGAGGTTGCAGTGAGTTATGAT
TGCACCACTGCGCTCTAGCCTGGGCCACAGAGTGAGACTCCACCCC
>ptr.U11.9.chr12_random FRAGMENT 1504 -> 1112
TGAAATTAAAGACAATACCATTTACATTAGCACCTCAAAATAAGAAATACTCTAGTATAAATCTAACAAA
ACATGTACAAAATCTATATGAGTAAAACAATGAAATGCTGGTAAAATAAATCAAAGATCTAAATAAATAG
AGAGATATTCCATGTTCGTGGATGGTGAGACTCAATATTGTTCAGATATCGGTTCTTTCCAGCTTGATCT
ATAGATTCAATATAATCATAATCAACTCCCAGTAGTCTCTTTTGTGGAACTGGCAAAGCAATTCTTAAGT
TTATGTAGAGAGGCAAAAGACTAGAACAGTTAACACAATATTGAAGGAGAAAACAAAGTCAGAGGGCTGA
CACTACCCCATTTCAAGACGTACTATAAAAGCTATTGTGATCA
>ptr.U11.9.chr12_random FRAGMENT 1829 -> 1912
AGATTCTACTATGTCTCACTCCTTCTCATCCTCCAGTTCTCAGCTGAAATGCTCTCTCCTCAGAGTAGCC
TTCTCTGACCACTC
>ptr.U11.9.chr12_random FRAGMENT 1967 -> 2118
CAAGGGTGTCTAATCTTTTGGCTTCCCTGGGCCACATGGCAAGAAGGAGAATTGTCTTGGGCCACACATA
AAATACACTAATACTAATGGTAACTGATGAGCTGGAAAAAAAAAAAAAGGAAAAAAAATTGCTAAAAAAA
CTCATAATGTTT
>ptr.U11.9.chr12_random FRAGMENT 2119 -> 2200
GGCCAGGCATGGTGGCACATGCCTATAATTACAGCAATTTGGGAGGCCAAGGTGGGCAGATCACCTGAGG
TCAGGAGTTCGA
>rno.U11.1.chr9 FRAGMENT 14 -> 368
ATGTGGGAAGAGGAAACTATAATGCCTCCATCAGATTGACCTGTGCCGAGTCTGTGGGGCATTTTTCTGA
TTAATTAACTCATCTGAGACATCTCAGCCAACTGGGATTATGCCACTCATGAATATGCTATCACATAAGA
AAATAAAAAAAAAACAATCTGTAGGATAGAAGCCAGTAACCTGCGTTCAATATTCTCCATTCTTCGTCTC
TTACCTCTTGTTTCCTGCCCTGCTTCTGTTCCTGCCCCGGCATCTCTTAGTGATGTACTACGGCAGGGTC
ATGTAAGCCAAATGAAACCTTTCTCTCTCAAGTTGGTTTTGGTTTTGGTCACAGTGTTCCCCACAGCAAC
AGAAA
>rno.U11.1.chr9 FRAGMENT 2196 -> 1912
TGTGCAGTCTCAGTTTCTGAAACATGGACTGGGTCTAGCAATTTCAGGATAACTGATAGAATTTAGCAAA
GTTGATTCAATATGACTCTCATGATTAGACTACAAATGATTATGACTGTCATTTTTCTATCTGACTCCTT
TTGCCTTCTCAACTTTGATTGATGATGGAAGCTGTCATATAGAGGCCATGTGCCAAAGAAATTCAGCCAA
CAACAGCTTGCAAGGGTCTAAACATTGCCAACAACCCTTCAATGAGCTTAGAAATAGGTGCTTCTCCAGT
TAAAC
>rno.U11.2.chr4 FRAGMENT 2 -> 1974
ACAAAAGAGAAACAAGCCGAGAAATTAGGGAATCGACACCCTTCATAGTAGACCCAAATAATATAAAGTA
CCTCGGTGTGACTTTAACCAAGCAAGTAAAAGATCTGTACAATAAGAACTTCAAGACTCTGAAGAACGAA
ATTGAATTAGACCTCAGAAGATGGTAAGATCTCCCATGCTCATGGATTGCCAGGACTAATATAGTAAAAA
TGGCCATTCTACCAAAAGCGATCTACAGATTCAATGCAATCCCCATCAAAATACCAATCCAATTCTTCAA
AGAATTAGACAGAACAATTTGCAAATTCATCTGGAATAACAAAAACCAAGGATGGCTAAAACTATTCTCA
ACAATAAAAGGACTTCAGGGGAAATCACTATCCCTGAACTCAAGCAGTATTACAGAGCAATAGTGATAAA
AACTGCATGGTATTGGTACAGAGACAAACAGATAGACCAGACAAACAGATAGAACAGAATTGAAGACCCA
GAAATGAACCCACACACCTATGGGCACTTGATTTTTGACAAAGGAACCAAAACCATCCAATGGAAAAAAA
GATAGAATTTTCAGCAAATGGTGCTGGTTCAACTGGAGGTCAACATGTAGAAGAATGCAGATCGATCCAT
GCTTATCACCCTGTACAAAGCTTAAGTCCAAGTGGATCAAGGACCTCCACATCAAACCAGATACACTCAA
ACTAATAGAAGAAACACTAGGGCAGCATCTGGAACACATGGGCACTGGAAAAAAATTCCTGAACAAAACA
CCAATGGCTTATTCTCTAAGATCAAGAATCGACAAATGGGATCTCATAAAACTGCAAAGCTTCTGTAAGG
CAAAGGACACTGTGGTTAGGACAAAACAGCAACCAACAGATTGGGAAAAGATCTTTACCAATCCTACAAC
AGATAGAGGGCTTATATCCAAAATATACAAAGAACTCAAGAAGTTAGACTGCAGGGAGACAAATAACTCT
ATTAAAAATGGGGTTCAGAAAAAAGGGCTTCTGTCGTGAGTGGCACACGCAGGGCAACTCGATTGCTCTG
CGTGCGGAATCGACATCAAGAGATTTCGGAAGCATAATTTTTTGGTACTTGGGCAGCTGGTGATCGTTGG
TCCCGGCGCCTGCGCGGTTGTGAAAATAAAGGTTTTCTTTAGTAGTTTAAAAAAAAAATGGGGTTCAGAG
CTAAACAAAGAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATGTTCAACATCTT
TAGTCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACACCAGTGAGAATGGCTAAGAT
TAAAAACTCAGGTGACAACAAATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTTTTGGTGG
GACTGCAGACTGGTGAAACCATTCTGGAAATCAGTCTGGGTGTTCCTCAGAAAATTGGACATTGAACTGC
CTGAGGATCCAGCTATACCTCTCTTGGGCATATACCCACAAGATGCCCCAACATATAAATGACACGTGGT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGA
GGAATGGATACAGGTACATCTACACAATATAGTACTACTCAACTATCAAAATCAGTGACTGCATGAAATT
CATGGGCAAATAGATGGGACTAGAAAATATCATACTGTGTGTATTAACCCAATCACAGCAAAACACACAT
AGTATGCACTCACTGATAAGAGGATATTAGCCCAAAATCTTGAATTACCCAAGATGCAATCCACAGACCA
CATGAAGCTCAAGAAGAAGGAAGACTAAAGTGTGGATGCTTCAGTCCTTTTTAAAAGTGGAACAATCATA
TTCATAGGAGGGGTAATGGAGACAAAGTTTGGAGCAGAGCCTGAAGGAATGGCCATTTAGAGGCTGTCCC
TCCTGGGGATACA
>rno.U11.2.chr4 FRAGMENT 2058 -> 1977
ATATACATATATATATACATATATATACATATATATATACATATATATACATATACATACATACACATAC
AAACACACATAT
>rno.U11.2.chr4 FRAGMENT 2059 -> 2200
ATATATATGCTCCAAAACTAGATAAGATCTTTGAAGCCAAAGAGTGCATGATGACTGGAGCCTGATATAG
CTGTCTCCTTAGAGCCTCAGCCAGAGCATGACAATCACAGAGGCAGATGCTCACAGCCAACCATTGAATT
AA
>rno.U11.3.chr10 FRAGMENT 396 -> 513
TGGTGCCTCGTGTCTTGAATTCCAGCTCCTGAGAAGGCAGAGTCAGGAAGCTCTATGAGTTTAAGGCCAG
CTTCATCTACAGAACAAGTTCTAGGATGGCTAGGGACATACAAATAAA
>rno.U11.3.chr10 FRAGMENT 683 -> 744
GAGGCATCTGCTCTATAGAGGGAGTTCCGGTCAACCTGGGACACACAGAGAAAACCAGTCTC
>rno.U11.3.chr10 FRAGMENT 762 -> 885
GGGCTGGAGAGATGGCTCAACAGTTAAGAGTACCAGCTGCTCTCCCAGAGGACCTGAGTTCAATTCCCAG
CAACCTCGTGGTGGTTCATGCCCATCTATAATAAACTCTGATGACCGCTGCTGG
>rno.U11.3.chr10 FRAGMENT 969 -> 927
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTGGAAG
>rno.U11.3.chr10 FRAGMENT 1233 -> 1349
CCTTTAATCTCAGCATGGATGAGCTAAAGGCAGGCAGAGCTCTGTGACATCCAGGCTAGCCTGATCTACA
TAGAGAGCTCCAGAGCTACATAGTGAGTCTTTCAAAAAAAAAAAAAA
>rno.U11.3.chr10 FRAGMENT 1472 -> 1398
AACAAAACAAAACAAAAACAAAAACAAAACAAAACAAAACAAAAAAAAACCCCAAAACAGAAAAAATTAA
ATAAA
>rno.U11.3.chr10 FRAGMENT 1621 -> 1487
GCCGGGTGGTGGTGGCGCGTACCTTTAATTCCAGTTCTCATGTGGGAGAGGCAGGTAGACCTCTGAATTT
GAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCCAGGACTATACAGAGAAACCTTGTCTC
>rno.U11.3.chr10 FRAGMENT 1799 -> 1657
TTCCATCTCTAGCACCCAAGTTGGGTGGCTGATAACTGTTTCTTTTCAATCCCAGGAGGATCTGATGCCT
CTGGCTTCCAGGGCACCAGCACTCACAAGAACATATACCCATTGTGTAAACACATGCACATAATTAAAAA
TAA
>rno.U11.3.chr10 FRAGMENT 1952 -> 1823
TGCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCGAGCTAGAGCGCTTGCCTAGCGAGC
GCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAGAAAAAAGAAAAAAAAAAAAA
>rno.U11.3.chr10 FRAGMENT 2140 -> 2190
GGCTGGGGATGCAGCTCCGTTGGTGAAGAGCCTGCCCAGTATACACAAAGC
>rno.U11.4.chrX FRAGMENT 28 -> 88
CATTATCTTCAAGTTTTTAAAATATTGTTTGAAAACTGATAACAGTTTTGCAATTGCAAAA
>rno.U11.4.chrX FRAGMENT 1563 -> 1611
GTAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAG
>rno.U11.4.chrX FRAGMENT 1872 -> 1779
TTTTTACCCTTTCATTTTTGCAAATATAGATGTCTAATACTTGATTTCTTAATACACTTGATTATTTCTT
TTATATTTCTTCTTAAGAAACAAC
>rno.U11.4.chrX FRAGMENT 2118 -> 2040
ATATATATATATATATATAAATGCATATATATATACATACATATATATATATAAATACATATATATATAT
ATAAAATGA
>rno.U11.4.chrX FRAGMENT 2176 -> 2136
ACAAACACACACACACACACACACACACACACACACACACA
>rno.U11.5.chr1 FRAGMENT 272 -> 150
GGTATGGTAGCATATTCCTTTGATCTCAGGAGAGGCAGGAGGAGGTTCTCTATGAACTATGAATTCAAGG
CCAGACTGGCCAAGCTGTAGGCCAATCAAGAGAACACAATGAGACCCTGTCTC
>rno.U11.5.chr1 FRAGMENT 920 -> 876
GAGGGAAAGAGAATGGAAAGAACACAGAGCTATTTAGAAGACAAA
>rno.U11.5.chr1 FRAGMENT 1151 -> 1195
AAAAAAAAAAAAAAAAAAAGAGTCCATCCTGTTGCCTCTCCATCC
>rno.U11.5.chr1 FRAGMENT 1308 -> 1204
GAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGTGAANNGCA
TGNAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAT
>rno.U11.5.chr1 FRAGMENT 1309 -> 1364
TTGTTNTACCACTATGACTCTAATAAAGCNNACCCCCCCCCTACNNCTACTNCCNC
>rno.U11.5.chr1 FRAGMENT 2179 -> 2058
GTGGTACACTCTAATTCCAGCACTCAGGAAACAGAGGCAAGCAGATCTCTGTGTTTGAGAGTAGCCTCGT
TCACAGAGTAAGTCTCAGGTCAGCCAAGGCTACACTGAGAAACCCTGTCTTG
>rno.U11.6.chr6 FRAGMENT 409 -> 296
GCTTAGTAGTTAAATGTATGTACTCTGGCCAGGCAGACTTAGCAGGCTCTACCACTTACCAGGCTGTGTG
TTCTTAGAAAACCCGTTAGACTCTCTGGGCTCTGGTTTTCCCAT
>rno.U11.6.chr6 FRAGMENT 521 -> 437
ACACATACACACACACAACACACACACACACACAAACCACATACACACCACACACACACACACACACACA
CACACACACACATGC
>rno.U11.6.chr6 FRAGMENT 562 -> 522
CGCCACACCACACATACATACCCCCCCCACACACACACTCC
>rno.U11.6.chr6 FRAGMENT 611 -> 571
ACACACACACACACACACACACACACACACATACACACACA
>rno.U11.6.chr6 FRAGMENT 880 -> 612
GGGGCTGGGAGGTGGGTCAGTGGGTAGAGCCGCACTGTACAAGAGCTTAGCTCGAATTTCAACTGAGCTC
AAATCCCCAAAGCTCAGAGCAGCCATGTACAACTAGATGTTGTGTTCCTACAGGAACATGAGAGGTAGAC
ACAGGAGTCACAGGAAGCTCCCCAGTCAGCTCCTGGGACAGACACAGAGGCAAACATCAAACCAACTCTG
TTGCAAACAGAGCAAAAGCAAGAATTGGCACCCAAGTCAACATGTACACACACACACAC
>rno.U11.6.chr6 FRAGMENT 953 -> 910
ACTTGGAAGGCAAAGGCAGGAGGATCACAAGTTCCATGCCAGCC
>rno.U11.6.chr6 FRAGMENT 1208 -> 1282
TGACACACACCTGTACTTCCTACACTCAAGAGGCTGAGGCAGGAGAGTTTTGATTCCAGGCTAGCCTGGG
CTACA
>rno.U11.6.chr6 FRAGMENT 1577 -> 1682
AGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTGGCAAGCACAAGGCCCTGGGTTCAGTCCCCA
ACTCCGAAAAAAAGAAAAAGAAAAAAAAAGAAAGAA
>rno.U11.6.chr6 FRAGMENT 1694 -> 1827
GCCAGGGGAGATGACCCACACTTTAATCCCAGCATTTAGGAGGCAGAGGCAGGTGGATCTTTGAGTTGGA
AGGCAGTCTGGTCTACAGAGAGAGAGTCTAGGATAATTCGGGCTACACAGAGAAACCCTGTCTC
>rno.U11.7.chr16 FRAGMENT 291 -> 148
TAGATCTGTGGCTCTCAACCTTTATAATGCCCTGACCATTTAATACAGTTCCTCATGTTGTGGTGATCCC
CAACCATAAAATTATCTTACTGCTACTTCATAACTATAATTTTGCTACTGTTATGAATTTCAATGTAAAT
ATCT
>rno.U11.7.chr16 FRAGMENT 1560 -> 1442
AGACTTCATTTCAGCAATAATTTAATAATTACAATTGATGAATTAAATTTATACCTTAGTAAAATATTAA
AAGACTATGAAAATTCTATGAATAAGAAAACACCATAAATTACAAAGAA
>rno.U11.7.chr16 FRAGMENT 1684 -> 1733
TTATAATAAAGATTATATTTGAGAATTTAAAATTACAATTGAGAGTAGAA
>rno.U11.7.chr16 FRAGMENT 1850 -> 1950
ATCCTCTAGATATGACCTAGAATGAATGTTTCTCTCCCTGAAATACATTTATTAATTAAAGTTCTTATAA
ACTTTAGCACATATATTTTAAAAGCTAATTG
>rno.U11.8.chr10 FRAGMENT 43 -> 98
AGGCTAGCCTGAGCTACATGAGACCCTGCCTCAAAAAAAAGGATACAATAAATTAG
>rno.U11.9.chr17 FRAGMENT 111 -> 298
GGTGGATGAGATGTTCTGCTGGAAAAGGTGCTTGCAGCTAAGCATAGTGACCTGAATCTGAGCAGGACCT
ACACAGTGGTAGGAGAGAAACATCTACAAAAGCGGTGCTCTGATCACTATTTGTACATCATGACATCTGT
GGGCACTACATGTAGAATCACACACACACACACACACACACACACACA
>rno.U11.9.chr17 FRAGMENT 660 -> 328
TGAATATACATGGCCCAGGGAGTGGCACTATTAGGAGGTGTGGCCTTGTTGGGGTAGGTGTGGCCTTGTT
GGAGGTAGTATGTCATTGTGGCTGTGGTCTTTAAGACCCTTATCCTACCTCCCTGGAAGTCAGACTTCTG
TTTGCCTTCTGAACAAGATGTAGAACTCTGAGCACTTCCTACACCATGCTTGCCTGGAAGCTGCTATGCT
CCCACCTTGATAATAATGGACTGAGCTTCTGAACCTGTCAGCCAGCCTCAATTAAATGTTGTCCTTATAA
GACTTGCCTTGATCATGTTGTCTCTTCACAGCAGTAAAACTCTATCTTAAAGA
>rno.U11.9.chr17 FRAGMENT 792 -> 873
CACACACAGGCATACATAGATATACAGATAAACACAGGCACACACAAATACACACATACACAGGCATACA
TACAGCCACACA
>rno.U11.9.chr17 FRAGMENT 874 -> 930
AATATACAGATACACAGACGCATACAGATATACACACAGATATACACATATACACAG
>rno.U11.9.chr17 FRAGMENT 1202 -> 1228
CTATTTATCTATCTATCTATCTATCTA
>rno.U11.9.chr17 FRAGMENT 1547 -> 1428
GGCTCATGTGCTTGGACACTTGGTCCTGGGTTGTTGGCATTGTTATAGAAGGTTGTGGAGCCTTTACTGG
GCAGAGGCCCAGTGGAGGAAGTGGGCCCCTGGGAATAGGCCTTGAGATTT
>spu.U11.1.gnl|ti|330798991 FRAGMENT 904 -> 799
AAGAAGAAGGAAAAGGGGAGGAGGATTAGGAGAAGAAGATCACGAAGAAGGAGAAGAGAAATGAGTAGGA
GCAAGAGAATGAGGAAAACATAAGAAGTAGTATGAG
>spu.U11.1.gnl|ti|330798991 FRAGMENT 1019 -> 1136
ATTTTATTGCTCTTTTTCCCCCTCCTTCTCCTACTTCTTATTTCTTCCTCATTCTCTTGCTCCTTCTCCT
ACTCATTCCTCTCCTCCTTCTTCTGCTACTTCTTCCTTTCTTCTCCCA
>spu.U11.1.gnl|ti|330798991 FRAGMENT 1137 -> 1208
ATTCTCCTCCCTTTTTACGCCGCCTCCTCCTCCTACTTCTCCTATACCTCAATTCTCTTCTTCTGATTCT
TC
>spu.U11.2.gnl|ti|252663728 FRAGMENT 590 -> 485
AAGAAGAAGGAAAAGGGGAGGAGGATTAGGAGAAGAAGATCACGAAGAAGGAGAAGAGAAATGAGTAGGA
GCAAGAGAATGAGGAAAACATAAGAAGTAGTATGAG
>spu.U11.2.gnl|ti|252663728 FRAGMENT 835 -> 707
AAAAGGGAGGAGAATGGGAGAAGAAAGCAAGAAGTAGCAGAGAAGGGAGGAGAGGAATGAGTAGGAGAAG
GAGCAAGAGAATGAGGAAAAATAAGAAGTAGGAGAAGGAGGGGGAAAAAGAACAATAAA
>spu.U11.2.gnl|ti|252663728 FRAGMENT 836 -> 870
TACGCNNNGCTCTCNTCCTACTTCTCCCTATACTC
>spu.U11.5.gnl|ti|257943862 FRAGMENT 1029 -> 658
TGAAGGATGAGTTATGGTCATGTGATTGCATTGTGAAAGGAACGTTGTGGAATCGATCAGAAAAGGTTGA
TCATCTCGCAATAAGACAGTAATGGTGTGTACTGCAAGGTTCTGGAATTATCAAAATGATAAGAAATGTG
GCCCAGTCTTGCAGTTATGAGTTACAAGCACTGTACACAGAAATATGTATATGGGACTACACGAACACGT
GGCATAACATTCCGTCCTGATTTTGTGCTGTTATAGGACAGTATTAGATGCTATTCAGGGAACTTTTTTT
TTTATCTGATGTTCTTCCACACTTGCATAATTAATAACAATGATAACGCTCTCAAATTATTTTTCTCCTC
TTCCCAGAACTCAACTTCCTCT
>spu.U11.7.gnl|ti|299077911 FRAGMENT 179 -> 128
CTCTCTCTCTTTCTCACTTCTCTCTCTCTCTCTCTCTCTCTCTTTCTACCAT
>spu.U11.7.gnl|ti|299077911 FRAGMENT 351 -> 423
GAGAGATCCACAGAGAGAAAGAGTGAGTGTGTGTGTGAGAGAGAGAGAGAAAGAGAGAGAAAGATGAAAG
AGA
>spu.U11.7.gnl|ti|299077911 FRAGMENT 654 -> 618
AATTATGATCATTTTGTCTTTGATTTGTCAATTACTA
>spu.U11.7.gnl|ti|299077911 FRAGMENT 1073 -> 959
ATGCTATTCAGGGAACTTTTTTTTTNATCTGATGTTCTCCCACACTTGCATAANTAATACCAATGATAAC
GCTCTCAAATTATTTTTCTCCTCTTCCCAGAACTCAACTTCCTCT
>spu.U11.8.gnl|ti|299077986 FRAGMENT 161 -> 65
CACAATACATACACAATACATCTCTTTCATCTTTCTCTCTCTTTCTCTCTCTCTCTCAACACACACTCAC
TCTTTCTCTCTGTGGATCTCTCTATCT
>spu.U11.8.gnl|ti|299077986 FRAGMENT 372 -> 336
AATTATGATCATTTTGTCTTTGATTTGTCAATTACTA
>spu.U11.8.gnl|ti|299077986 FRAGMENT 1038 -> 677
GTTATGGTCATGTGATTGCATTGTGAAAGGAACGTTGTGTAATCGATCAGAAAAGGTTGATCATCTCGCA
ATAAGACAGTAATGGTGTGTACTGCAAGGTTCTGGAATTATCAAAATGATAAGAAATGTGGCCCAGTCTT
GCAGTTATGAGTTACAAGCACTGTACACAGAAATATGTATATGGGACTACACGAACACGTGGCATAACAT
TCCGTCCTGATTTTGTGCTGTTATAGGACAGTATTAGATGCTATTCAGGGAACTTTTTTTTTTATCTGAT
GTTCTTCCACACTTGCATAATTAATAACAATGATAACGCTCTCAAATTATTTTTCTCCTCTTCCCAGAAC
TCAACTTCCTCT
>tni.U11.1.chr21 FRAGMENT 2142 -> 1765
CGGTCCGGAGCCCGGCGGGTTGGCGCTGGCCCGGCGCTGGCCCGGCGCTAGCCTCCGCTAGCCCGGCGCT
AGCCTCCGCTAGCCCGGCGCTAGCCTCCGCTAGCCTCCGCTAGCCTCCCCGGTGCGCTCGCTCGCAGGTG
CGGGGCTCAACCGCGGCTCCAGCGCGGGTTGGCGGGTACCGCGGGGCGATCGCGGCCCGGTTCGCGCCTC
GTCGCCCCCGTGAGCAACCCTCGCAGCTCGGCACACTTGTGCTCGGCGGAGGCCATTGCAGCTCCCGCCG
GGGCGTCGGGTTGACGCGGGGAGCCCGGCCGACATCGCCGGCGTCGCTGCCGGAGACGGCTGGAGCTCGG
CGCTCGCAGCGCGGCGGCTGCGTGCCGC
>tni.U11.3.chr2 FRAGMENT 591 -> 624
TGGTGTGTGTGTGTGTGTGCATGTGTGAATCTAA

---

Annotation of Repbase Sequences

;ID   AGM1        DNA   ; ANG   ; 5983 BP
;XX
;DE   Anopheles gambiae Moose LTR retrotransposon, complete sequence.
;XX
;AC   AF060859
;XX
;DT   27-JUL-1999 (Rel. 4.06, Created)
;DT   01-JUL-2005 (Rel. 4.06, Last updated, Version 2)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; AGM1.
;XX
;OS   Anopheles gambiae
;XX
;OC   Anopheles gambiae
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
;OC   Culicidae; Anophelinae; Anopheles.
;XX
;RN   [1]  (bases 1 to 5983)
;RA   Biessmann,H., Walter,F.M., Chuan,S., Le,D. and Yao,G.J.
;RT   AGM1.
;RL   Direct Submission to Genbank (29-JUL-1998)Developmental Biology
;RL   Center, University of California, Irvine, CA 92697, USA
;XX
;RN   [2]  (bases 1 to 5983)
;RA   Biessmann,H., Walter,M.F., Le,D., Chuan,S. and Yao,J.G.
;RT   Moose, a new family of LTR-retrotransposons in the mosquito
;RT   Anopheles gambiae.
;RL   Insect Mol Biol 8(2), 201-212 (1999)
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           836..1960
;FT                 /product="AGM1_1p"
;FT                 /note="ORF1"
;FT                 /translation="MKLPVIQLPEFGGDFNDWLPFHDTFVSLIDKSDELS
;FT                 GVQKLHYLKAALKGEAARLMSQFSLQMRITKCMANVGRPLWHKHLLKKRH
;FT                 IQAILRLPKIINSNLDLLRRTVDDFQRHTLVLEQLGEPIKHLSSFLVELL
;FT                 SEKLDSASLAAREEAQADKSYTYSDMVEFLRKRVRLLETLANDTGETSKR
;FT                 QPRVKVSVNTAAAAEKKVDMCVVCGKQGHTIVNCRRFNEFDAKKRHEVVR
;FT                 QHKLCWNCLQGSHFVTSCTSRYGCQTCGKRHHTLLHAERSSSVIADDSVG
;FT                 SVSTMVLANIPMQCNSTDRSSYSNVMLTTVVLFVVDANGTQHPVRALLDN
;FT                 GAQPNAISERLSQLLCLRVCVPMYPLQVWMERRLRRHVK"
;FT   CDS           1960..5607
;FT                 /product="AGM1_2p"
;FT                 /note="ORF2"
;FT                 /translation="MKVEIRSRFTQFALKLNFLVLSKVTANTPATSFSTS
;FT                 CWKLPAGLALADPEFHQSGRVDMLIGASHFYTFLREGRLKLSEHGPLLVE
;FT                 TVFGWVVTGEVLREEAIIQQQAAQCHVMLSSENISDQLERFWKIEELHVS
;FT                 HFSADEQRCEAYYEQTVSRDETGRYIVKLPKHQQHSTMIGKSETTSLKRF
;FT                 AGLERKLFANSQLRQQYNEFMLEYIQLGHMVPVSPDNLDAATCCYLPHHP
;FT                 VFKETSSTTKMRVVFDGSAPTSTGHSLNDALLVGPVIQDDLLSLIIRFRK
;FT                 FQVALVPDLEKMYRQVLVHPEDRPLQRYGGAYELRTVTYGLAPSSFLATR
;FT                 TLQQLAEDEGDAFPTAKDTLKKQLYMDDLIAGSNSVDGAIQLREELSALA
;FT                 QRGGFTFRKWCSNSLAVLSDVPAEQLATKSSLRFDDKETISTLGICWEPE
;FT                 IDTFQFNISITTKSERDTMRTILSMIAELYDPLGLISPVIITAKVLMQSL
;FT                 WRLKLSWDDTVPEELQRNWIRFRAELPELKDFSIPRFAFAHQYRQAEIHC
;FT                 FTDASELAYGACIYIRSEAEDGSIHVNLLASKSRVAPLKALTIPRLELCG
;FT                 ALLGARLHEKVMAAMEIKFVAHRFWTDSTVVLDWLNAESKTWKTFVANRV
;FT                 AEIQAIRDAVWQHVSGQENPADLISRGVLPHQLINNQLWKQGPQWLSERK
;FT                 ENWPQQKERTGQITTDEIRSNVVLTTQIQEKNEIFTRYGSYQKLIDVVAY
;FT                 CFRFVHNARRLQSRISNSALTVKELADAKKRLVKLVQAEEFTNDLYKIHK
;FT                 GIPVARNSTLKLLNPFIDNEGIIRVGGRLRNSDLNYNIKHQIVLPGFHPF
;FT                 TQLLIMDKHVKAMHGGISSTLNAVRDEIWPINGKRAVRKVIRNCFRCCRA
;FT                 NPQPIIQPEGQLPAERVTVNEVFSCTGLDYCGPLYLRPTHRKAAPNKCYI
;FT                 CVFVCMSTKAVHLELVGDLSTNSFLMALDRFVYRRGKPKHIYSDNGTNFI
;FT                 GAKNELHQIYKMLFNDSADSKIAKHLAKEEIQWHLIPPRAPNFGGLWEAA
;FT                 VKVAKTHLIRQLGSSRLSSEEMTTVLVKIEGCMNSRPLVPLSEDPNDLTA
;FT                 LTPAHFHITNNLKVILEPDLKEVPMNRLGRYQLLHGYTQNFWIHWKQDYL
;FT                 KNLTVLHRSAKQSKQLSVGDIVILKDEQLPAVQWPLARVVEIHPGADGIS
;FT                 RVATLRTASGIVKRAVSKICPLQCSNQRMD"
;XX
;DR   Positions       1    5983  Accession No      AF060859 GenBank
;XX
;SQ   Sequence 5983 BP; 1808 A; 1152 C; 1427 G; 1596 T; 0 other;
AGM1
1
;ID   ALU         DNA   ; HUM   ; 312 BP
;XX
;DE   Alu-Jo subfamily - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   22-JUL-2005 (Rel. 7.05, Last updated, Version 5)
;XX
;KW   SINE1; SINE; Interspersed Repeat; ALU; Alu-J; Alu-Jo; AluJ;
;KW   AluJo; Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Jurka,J. and Smith,T.
;RT   A fundamental division in the ALU family of repeated sequences.
;RL   Proc. Natl. Acad. Sci. USA 85, 4775-4778 (1988)
;XX
;RN   [2]  (bases 1 to 283)
;RA   Jurka,J.
;RT   Origin and evolution of Alu repetitive elements.
;RL   Molecular Biology Intelligence Unit:The impact of short
;RL   interspersed elements (SINEs) on the host genome (ed. Richard J.
;RL   Maraia), R.G. Landes Company, Austin, pp.25-41 (1995)
;XX
;CC   This is the oldest known dimeric Alu subfamily.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 312 BP; 89 A; 81 C; 96 G; 46 T; 0 other;
ALU
1
;ID   ARNOLD4     DNA   ; ATH   ; 8459 BP
;XX
;DE   Autonomous DNA-transposon ARNOLD4.
;XX
;AC   AC006217
;XX
;DT   08-APR-1999 (Rel. 4.03, Created)
;DT   08-APR-1999 (Rel. 4.03, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; ARNOLD; ARNOLD4; ARNOLDY;
;KW   Autonomous DNA transposon; transposase.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 8459)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ARNOLD4.
;RL   Direct Submission to Repbase Update (MAR-1999)
;XX
;RN   [2]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Molecular paleontology of transposable elements from Arabidopsis
;RT   thaliana.
;RL   Genetica 107(1-3), 27-37 (1999)
;XX
;CC   ARNOLD4 is an autonomous DNA transposon. It is bordered by a
;CC   perfect
;CC   9 bp-long target site duplication. This DNA transposon does not
;CC   have
;CC   terminal inverted repeats. It encodes MUDRA-like transposase and
;CC   one/two additional proteins in direct and reverse orientations,
;CC   respectively. The additional protein includes a transmembrane
;CC   domain related to the one present in proteins from the drug
;CC   resistance
;CC   translocase family (also known as the major facilitator family).
;CC   This structural feature links ARNOLD4 transposon with bacterial
;CC   transposons many of which are well known to be cariers of drug
;CC   resistance genes.
;CC   ARNOLD-like autonomous transposons are/were responsible,
;CC   putatively,
;CC   for a proliferation of ARNOLDY-like non-autonomous DNA
;CC   transposons.
;XX
;DR   Positions    7585   16043  Accession No      AC006217 GenBank
;XX
;SQ   Sequence 8459 BP; 2542 A; 1481 C; 1310 G; 3126 T; 0 other;
ARNOLD4
1
;ID   ASAT_CY     DNA   ; VRT   ; 262 BP
;XX
;DE   Alu satellite sequence from Cyprinids - consensus.
;XX
;AC   .
;XX
;DT   22-OCT-2004 (Rel. 9.09, Created)
;DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
;XX
;KW   SAT; Satellite; Simple Repeat; ASAT_CY; Alu satellite repeat.
;XX
;OS   Cyprinidae
;XX
;OC   Cyprinidae
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes.
;XX
;RN   [1]
;RA   Venugopal,T. and Pandian,J.T.
;RT   A conserved Cyprinid Alu Satellite isolated from Labeo rohita,
;RT   clone RALU #16.
;RL   Unpublished
;XX
;RN   [2]
;RA   Gentles,A., Kohany,O. and Jurka,J.
;RT   Consensus of Cyprinid alu satellite sequence.
;RL   Direct Submission to Repbase Update (JUN-2004)
;XX
;CC   Average similarity to consensus 82%.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 262 BP; 90 A; 33 C; 32 G; 107 T; 0 other;
ASAT_CY
1
;ID   ATCOPIA38A_I DNA   ; ATH   ; 4206 BP
;XX
;DE   Internal region of ATCOPIA38A copia-like LTR-retrotransposon.
;XX
;AC   AC007519
;XX
;DT   25-OCT-2001 (Rel. 6.09, Created)
;DT   25-OCT-2001 (Rel. 6.09, Last updated, Version 1)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat; ATCOPIA38ALTR;
;KW   ATCOPIA38A_I; COPIA superfamily; LTR-retrotransposon;
;KW   copia-like polyprotein; internal region; reverse transcriptase.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 4206)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATCOPIA38A_I.
;RL   Direct Submission to Repbase Update (24-OCT-2001)
;XX
;RN   [2]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Molecular paleontology of transposable elements from Arabidopsis
;RT   thaliana.
;RL   Genetica 107(1-3), 27-37 (1999)
;XX
;CC   ATCOPIA38A_I is an internal region of the ATCOPIA38A copia-like
;CC   endogenous retrovirus flanked by 2% divergent ATCOPIA38ALTR
;CC   long terminal repeats and a 5-bp target-site duplication
;CC   (ATTCA). CDS is slightly damaged.
;CC   ATCOPIA38A_I is ~20% divergent from ATCOPIA38_I and
;CC   ATCOPIA38B_I.
;XX
;DR   Positions   45491   41286  Accession No      AC007519 GenBank
;XX
;SQ   Sequence 4206 BP; 1147 A; 796 C; 899 G; 1364 T; 0 other;
ATCOPIA38A_I
1
;ID   ATCOPIA55_I DNA   ; ATH   ; 4424 BP
;XX
;DE   Internal region of ATCOPIA55 copia-like LTR-retrotransposon.
;XX
;AC   AL161511
;XX
;DT   01-OCT-2001 (Rel. 6.09, Created)
;DT   01-OCT-2001 (Rel. 6.09, Last updated, Version 1)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat; ATCOPIA55LTR;
;KW   ATCOPIA55_I; COPIA superfamily; LTR-retrotransposon;
;KW   copia-like polyprotein; internal region; reverse transcriptase.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 4424)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATCOPIA55_I.
;RL   Repbase Reports 1(1), 12-12 (2001)
;XX
;CC   ATCOPIA55_I is an internal region of the ATCOPIA55 copia-like
;CC   endogenous retrovirus flanked by 1% divergent ATCOPIA55LTR
;CC   LTRs and a 5-bp target-site duplication.
;CC   ATCOPIA55_I encodes the 1421-aa ATCOPIA55p copia-like
;CC   polyprotein.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           14..4276
;FT                 /product="ATCOPIA55p"
;FT                 /translation="MEQPIELYSQPLLNISNCVTVKLNGRNYLLWKTQFE
;FT                 SFLSGQGLLGFVTGALKPPDPVLATPLTAEAAAVETVNPAYLSWVKSDQV
;FT                 VRSWLLGSLSEDILSEVVNTTTSQEVWLALAKHFNRVSSSRLFELQRKLQ
;FT                 TIEKRDRSMSDYLKEIKSICEQLASVGSPVNEKMKIFAALHGLGREYEPI
;FT                 KTSIEGSMDTVPTTFEDISPRLTGFDDRLLAYTDAASITPHLAFNTQRYD
;FT                 STTYYNKGRGSSSQKSKGRGGYTTQGRGFHQQISSGSSVSSGQSVERPVC
;FT                 QICGKIGHPALKCWHRFDNAYQHEDMPTALAALRITDVTDQAGSEWCADS
;FT                 AATAHVTSSPHHLQQSRAYSGSDTVMVGDGNFLPITHTGSALLPTTSGTL
;FT                 PLLDVLVVPDIAKSLLSVSKLTTDYPCTLEFDANGVIVKDKVTKRLLTLG
;FT                 QNKNGLYTLKDPPVQAFYSSRQQAASDEVWHRRLGHPNSKILQQLVSTKA
;FT                 IIINKSTNRMCESCQIGKSSRLSFSDSQFVATRLLERVHCDLWGPSPVLS
;FT                 NQGFKYYVIFIDHWSRYCWFYPLKCKADFYITFCKFQKFVETQFNQKIST
;FT                 FQCDGGGEFISHRFLKHLEESGIQQSISCPYTPQQNRLAERKHRHITELG
;FT                 LSMLFSAKLPQKVWVEAFFTSNFLSNILPTTTLPNQMSPFERLHGHQPEY
;FT                 SALRTFGCSCFPTLRNYASNKFDPRSLKCVFLGYNDRYKGYRCIYPPTGR
;FT                 VYISRHVIFDESSFPFQDTYLHLQNLGSTKLLEAWQQNFMPSQKNQSETQ
;FT                 AASVFSEDDFPPLPVTRVQVSPPNVTPQAAQSTVQREEQPADTDIQSNSP
;FT                 RNQAESPALVDRECIERTTGSDPASIGDNALSPQDSATQRSPVQSTETAG
;FT                 TSDQNQRTEAAVDPVQQVHPMVTRSKKGVVKPNPRYVLLTQKASHPEPKT
;FT                 VTQALKHEGWKGAMGEEIDTCVETNTFSLVPYTPDMNVLGSKWVFRTKIN
;FT                 ADGSLNKLKARLVAKGYHQEEGIDYLETYSPVVRTATVRLVLHIATVMEW
;FT                 NLKQLDVKNAFLHGDLNETVFMHQPAGFVDKTKPNHVWHLHKSIYGLKQS
;FT                 PRAWYDKFTNYLLEFGFVCSIQDPSLFFYEQGRDVLILLLYVDDIVLTGS
;FT                 NNILMDRLLQEMSKEFRMTDMGSLQYFLGIQAQNSDQGLFLSQQKYAEDL
;FT                 LQVAGMIDCAPMPTPLPVQLHKVPKQNELFSNSTYFRSLAGKLQYLTLTR
;FT                 PDIQFSVNFVCQKMHAPTTADYNLLKRILRYVKGTITMGLLFNKNTDFTL
;FT                 RTYTDGDYSQHSKQKKSATNNDAVFKLRAFSDSDEKQDVLQEDSVPFLAT
;FT                 ISSPGRRRSNQLSPRAQQKPSIKPCQIQLLKSSGSITCSEISTFHNLIHR
;FT                 SSMETTFPPSILLQTRYFTHALNTFKLTIILLEKG"
;XX
;DR   Positions  190949  195248  Accession No      AL161511 GenBank
;XX
;SQ   Sequence 4424 BP; 1304 A; 1013 C; 898 G; 1209 T; 0 other;
ATCOPIA55_I
1
;ID   ATENSPM11   DNA   ; ATH   ; 8144 BP
;XX
;DE   ATENSPM11 is a fossilized DNA transposon.
;XX
;AC   AB028618
;XX
;DT   27-2001 (Rel. 6.11, Created)
;DT   27-2001 (Rel. 6.11, Last updated, Version 1)
;XX
;KW   EnSpm; DNA transposon; Interspersed Repeat; ATENSPM11;
;KW   ATENSPM11 family; En/Spm superfamily; TIR; transposase.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 8144)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Molecular fossil of the ATENSP11 family.
;RL   Repbase Reports 1(4), 7-7 (2001)
;XX
;CC   ATENSPM11 is a family of fossilized DNA transposons that belong
;CC   to the En/Spm superfamily.
;CC   Only two copies of ATENSPM11 are present in the A. thaliana
;CC   genome,
;CC   they are 95% identical to each other. The second copy is
;CC   harbored
;CC   by chromosome 4 and it is severely damaged by two long
;CC   deletions.
;CC   The first copy, deposited in Repbase, has been inserted recently
;CC   into
;CC   ATHILA7LTR copy, it is flanked by the GAT target site
;CC   duplication.
;CC   ATENSPM11 has 29-bp imperfect terminal inverted repeats and
;CC   encodes
;CC   an En/Spm-like transposase by several exons. Some of them are
;CC   damaged
;CC   by a few false stop codons.
;XX
;DR   Positions     953    9096  Accession No      AB028618 GenBank
;XX
;SQ   Sequence 8144 BP; 2496 A; 1287 C; 1786 G; 2575 T; 0 other;
ATENSPM11
1
;ID   ATENSPM3    DNA   ; ATH   ; 8456 BP
;XX
;DE   ATENSPM3, an autonomous DNA transposon.
;XX
;AC   AC006429
;XX
;DT   09-NOV-1999 (Rel. 4.1, Created)
;DT   09-NOV-1999 (Rel. 4.1, Last updated, Version 1)
;XX
;KW   EnSpm; DNA transposon; Interspersed Repeat; ATENSPM3;
;KW   En/Spm superfamily; TIR; Autonomous DNA transposon; transposase.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 8456)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATENSPM3.
;RL   Direct Submission to Repbase Update (NOV-1999)
;XX
;RN   [2]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Molecular paleontology of transposable elements from Arabidopsis
;RT   thaliana.
;RL   Genetica 107(1-3), 27-37 (1999)
;XX
;CC   ATENSPM3 is an autonomous DNA transposon from En/Spm
;CC   superfamily.
;CC   Its individual copies are ~98% identical to each other.
;CC   They are bordered by 3 bp-long target site duplications.
;CC   Two putative proteins are encoded by multiple exons.
;XX
;DR   Positions   85404   76949  Accession No      AC006429 GenBank
;XX
;SQ   Sequence 8456 BP; 2590 A; 1350 C; 1885 G; 2631 T; 0 other;
ATENSPM3
1
;ID   ATHAT10     DNA   ; ATH   ; 3243 BP
;XX
;DE   ATHAT10 is a hAT-like autonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   02-MAY-2002 (Rel. 7.04, Created)
;DT   02-MAY-2002 (Rel. 7.04, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; ATHAT10; ATHATN10;
;KW   Autonomous DNA transposon; hAT superfamily.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 3243)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATHAT10, a hat-like autonomous DNA transposon from Arabidopsis
;RT   thaliana.
;RL   Repbase Reports 2(4), 2-2 (2002)
;XX
;CC   ATHAT10 is an ancient autonomous hAT-like DNA transposon.
;CC   There are several copies of ATHAT10 present in the genome.
;CC   They are ~95% identical with the consensus sequence.
;CC   ATHAT10 has 12-bp terminal inverted repeats and encodes the
;CC   ~670-aa ATHAT10p transposase (there is one false frame shift at
;CC   position ~1350).
;CC   The ATHATN10 DNA transposon is a nonautonomous derivative of
;CC   ATHAT10.
;CC   CDS join(884..2869).
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           join(835..1380,1385..2869)
;FT                 /product="ATHAT10p"
;FT                 /translation="MSSDSFRSNIGTPIEDVHNSTPAINTQESATEEQAN
;FT                 TSSGKQRLNASDIFKVHFRKEKIDGKMKACCNYCNKSFFWKSGSGYGSYR
;FT                 YHLVNNHPEKYGGETQNATSANLSNFHYSDKRNREELAKCVAVDHLSFSF
;FT                 GEKLGFNNYCQKALNPQAKRVPRTTLTRTLKSLYRKTKKRFRMFVFLPNN
;FT                 VSICSDIWSDQWQIHHYMGITSHWLDSDWIIQKRIIAFRVFYERHTSDNI
;FT                 FKLIKIILEEYNLTNKIFSISFDNASANTASIDELINNCSPILGGKYFHV
;FT                 RCICHVLNLCVQDGLLVSQNNLISPIKTALNYLWGHPQLMKKWFRFCKMH
;FT                 NVSPKRFSRDVPTRWNSTYDMLVDSIGYKDLLCSFIQQNCSSLTLWPTHW
;FT                 DDCNALLKLLKCFNDATFLLSGVYYHTSHLLLYECVNIADVMHEHENNTV
;FT                 LSSCITSMRDKWLKYYREIPPLNLLASVFDPRTKFDGLYDYLVAYYDLLH
;FT                 LSDSINVPSIISNSRKDIENLYDEYYRLYEHLVPQGTESSLQNDMSSTST
;FT                 LSLAERMRRRKRQRPSQGNNAELEKYLSTNFEFSDADAGNNFQIIHWWKS
;FT                 HQSQYPILAMIAKDVLSSPVSTVSVERAFSMGGQILDETRSRMSPDSLEA
;FT                 QACLDDWTRAGYRQQEFLRENEEELEDIDSDVSSTRSEDSD"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 3243 BP; 1132 A; 478 C; 504 G; 1127 T; 2 other;
ATHAT10
1
;ID   ATHATN3     DNA   ; ATH   ; 554 BP
;XX
;DE   ATHATN3 nonautonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   27-JAN-2000 (Rel. 5, Created)
;DT   27-JAN-2000 (Rel. 5, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   ATHATN3; hAT superfamily; nonautonomous DNA transposon.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 554)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATHATN3.
;RL   Direct Submission to Repbase Update (JAN-2000)
;XX
;CC   The ATHATN3 copies are ~90% identical to the consensus sequence.
;CC   It's a putative HAT-like nonautonomous DNA transposon flanked
;CC   by 11-bp TIRs and 8-bp target-site duplications. There are
;CC   20-100
;CC   copies of ATHATN3 in the genome.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 554 BP; 205 A; 134 C; 76 G; 139 T; 0 other;
ATHATN3
1
;ID   ATHATN5     DNA   ; ATH   ; 541 BP
;XX
;DE   ATHATN5 nonautonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   27-JAN-2000 (Rel. 5, Created)
;DT   27-JAN-2000 (Rel. 5, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   ATHATN5; hAT superfamily; nonautonomous DNA transposon.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 541)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATHATN5.
;RL   Direct Submission to Repbase Update (JAN-2000)
;XX
;CC   The ATHATN5 copies are ~90% identical to the consensus sequence.
;CC   It's a HAT-like nonautonomous DNA transposon flanked
;CC   by perfect 12-bp TIRs and 8-bp target-site duplications.There
;CC   are
;CC   10-20 copies of ATHATN5 in the genome.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 541 BP; 220 A; 109 C; 59 G; 143 T; 10 other;
ATHATN5
1
;ID   ATHILA_I    DNA   ; ATH   ; 7414 BP
;XX
;DE   Internal portion of the ATHILA endogenous retrovirus.
;XX
;AC   X81801
;XX
;DT   11-NOV-1996 (Rel. 1.1, Created)
;DT   04-2001 (Rel. 6.11, Last updated, Version 2)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; ATHILA;
;KW   ATHILA_I; ATHILA_LTR; Gypsy superfamily.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 7414)
;RA   Pelissier,T., Tutois,S., Deragon,M.J., Tourmente,S., Genestier,S.
;RA   and Picard,G.
;RT   Athila, a new retroelement from Arabidopsis thaliana.
;RL   Plant Mol. Biol 29(3), 441-452 (1995)
;XX
;RN   [2]  (bases 1 to 7414)
;RA   Pelissier,T.
;RT   ATHILA_I.
;RL   Direct Submission to Genbank (19-SEP-1994)T. Pelissier, GDR 977
;RL   Biomove CNRS, Universite Blaise Pascal, 24 Avenue des Landais,
;RL   63177 Aubiere Cedex, FRANCE
;XX
;CC   ATHILA_I is an internal portion of the ATHILA LTR
;CC   retrotransposon.
;CC   ATHILA 10.5 kb elements, representing 0.3% of the genome,
;CC   present
;CC   several features of retrotransposons and retroviruses. Athila
;CC   elements
;CC   are flanked by 1.5 kb long terminal repeats (ATHILA_LTR) that
;CC   are
;CC   themselves bounded by 5 bp perfect inverted repeats. These LTRs
;CC   start and end with the retroviral consensus 5'TG...CA3'
;CC   nucleotides.
;CC   A tRNA-binding site and a polypurine tract are found adjacent to
;CC   the 5'
;CC   and 3' LTR respectively. The central domain is composed of two
;CC   long
;CC   open reading frames (ORFs) of 935 and 694 amino acids. Despite
;CC   several
;CC   indications of recent transposition activity, the translation of
;CC   these
;CC   ORFs failed to reveal significant homology with proteins
;CC   associated to
;CC   retrotransposition. The authors suggest that the Athila family
;CC   could
;CC   result from the transduction and dispersion of a cellular gene
;CC   by a
;CC   retrotransposon.
;CC   primer_bind 4..18
;CC   /note="complementary to Lupine tRNAglu 3' end"
;CC   CDS 193..3000
;CC   /note="Athila ORF 1"
;CC   /codon_start=1
;CC   mRNA 3709..>5793
;CC   /note="Athila ORF 2"
;CC   misc_feature 7407..7413
;CC   /note="poly purine track".
;XX
;DR   Positions    1540    8953  Accession No        X81801 GenBank
;XX
;SQ   Sequence 7414 BP; 2284 A; 1624 C; 1622 G; 1884 T; 0 other;
ATHILA_I
1
;ID   ATMU1       DNA   ; ATH   ; 4929 BP
;XX
;DE   ATMU1, an autonomous DNA transposon.
;XX
;AC   AF077407
;XX
;DT   16-FEB-1999 (Rel. 4.01, Created)
;DT   16-FEB-1999 (Rel. 4.01, Last updated, Version 1)
;XX
;KW   MuDR; DNA transposon; Interspersed Repeat; ATMU1; ATMU2;
;KW   MUDR superfamily; TIR; Autonomous DNA transposon; transposase.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 4929)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATMU1.
;RL   Direct Submission to Repbase Update (FEB-1999)
;XX
;RN   [2]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Molecular paleontology of transposable elements from Arabidopsis
;RT   thaliana.
;RL   Genetica 107(1-3), 27-37 (1999)
;XX
;CC   ATMU1 is an autonomous DNA transposon from MUDR superfamily.
;CC   It has 10 bp-long target site duplications and
;CC   280 bp-long TIRs. These TIRs form several subfamilies of
;CC   ATMU nonautonomous transposons. Transposase encoded by ATMU1
;CC   is most close to the transposase encoded by ATMU2 transposon
;CC   in the A.thalian genome and MUDR transposons found in the maize
;CC   genome. ATMU1 transposase has been identified before (see
;CC   GenBank
;CC   Accession No. AF077407).
;XX
;DR   Positions   93315   98243  Accession No      AF077407 GenBank
;XX
;SQ   Sequence 4929 BP; 1466 A; 879 C; 1159 G; 1425 T; 0 other;
ATMU1
1
;ID   ATREP10D    DNA   ; ATH   ; 777 BP
;XX
;DE   ATREP10D is a non-autonomous DNA transposon from the Helitron
;DE   class - a consensus.
;XX
;AC   .
;XX
;DT   07-MAY-2001 (Rel. 6.04, Created)
;DT   07-MAY-2001 (Rel. 6.04, Last updated, Version 1)
;XX
;KW   Helitron; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   ATREP10D; non-autonomous DNA transposon; the HELITRON class.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 777)
;RA   Kapitonov,V.V.
;RL   Direct Submission to Repbase Update (MAY-2001)
;XX
;RN   [2]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Rolling-circle transposons in eukaryotes.
;RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001)
;XX
;CC   ATREP10D copies are ~97% identical to the consensus sequence.
;CC   There are ~20 copies of ATREP10D in the genome.
;CC   ATREP10D shares common structural features with elements from
;CC   the
;CC   ATREP superfamily; it is a non-autonomous derivate of
;CC   HELITRON-like
;CC   transposons. There is an 82% nucleotide identity between
;CC   ATREP10D
;CC   and ATREP10A consensus sequences.
;CC   ATREP10D elements have been inserted into AT target sites
;CC   without
;CC   duplications of the sites.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 777 BP; 318 A; 75 C; 81 G; 303 T; 0 other;
ATREP10D
1
;ID   ATREP7      DNA   ; ATH   ; 940 BP
;XX
;DE   ATREP7 is a non-autonomous Helitron DNA transposon - a
;DE   consensus.
;XX
;AC   .
;XX
;DT   28-APR-1999 (Rel. 4.03, Created)
;DT   24-MAY-2001 (Rel. 6.04, Last updated, Version 2)
;XX
;KW   Helitron; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   ATREP; ATREP7; HELITRON class; non-autonomous DNA transposon.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 940)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ATREP7.
;RL   Direct Submission to Repbase Update (APR-1999)
;XX
;RN   [2]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Molecular paleontology of transposable elements from Arabidopsis
;RT   thaliana.
;RL   Genetica 107(1-3), 27-37 (1999)
;XX
;RN   [3]  (bases 1 to 940)
;RA   Kapitonov,V.V.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (MAY-2001)
;XX
;RN   [4]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Rolling-circle transposons in eukaryotes.
;RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001)
;XX
;CC   ATREP7 individual copies are ~94% identical to the consensus
;CC   sequence.
;CC   Multiple diagnostic positions indicate the existence of several
;CC   ATREP7
;CC   subfamilies. ATREP7 copies have been inserted precisely into the
;CC   AT
;CC   target sites, without duplications and deletions of genomic DNA.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 940 BP; 361 A; 111 C; 114 G; 344 T; 10 other;
ATREP7
1
;ID   B1          DNA   ; ROD   ; 135 BP
;XX
;DE   Mouse B1 repetitive sequence - a consensus.
;XX
;AC   .
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; B1; Repetitive sequence.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]
;RA   Quentin,Y.
;RT   Successive waves of fixation of B1 variants in rodent lineage
;RT   history.
;RL   J.Mol.Evol 28, 299-305 (1989)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 135 BP; 29 A; 37 C; 44 G; 24 T; 1 other;
B1
1
;ID   B1F         DNA   ; ROD   ; 151 BP
;XX
;DE   B1F repetitive element - an old subfamily consensus.
;XX
;AC   .
;XX
;DT   20-JUL-1999 (Rel. 4.06, Created)
;DT   20-JUL-1999 (Rel. 4.06, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; B1; B1F; Repetitive sequence.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]
;RA   Quentin,Y.
;RT   Successive waves of fixation of B1 variants in rodent lineage
;RT   history.
;RL   J.Mol.Evol 28, 299-305 (1989)
;XX
;RN   [2]  (bases 1 to 151)
;RA   Jurka,J.
;RT   B1F.
;RL   Direct Submission to Repbase Update (JUL-1999)
;XX
;CC   This consensus differs slightly from Quentin's consensus.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 151 BP; 44 A; 38 C; 42 G; 27 T; 0 other;
B1F
1
;ID   B2          DNA   ; ROD   ; 209 BP
;XX
;DE   Mouse B2 repetitive sequence - a consensus.
;XX
;AC   .
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; B2; B2 repetitive sequence.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]
;RA   Bains,W. and Temple-Smith,K.
;RT   Similarity and Divergence among Rodent Repetitive DNA Sequences.
;RL   J Mol Evol 28, 191-199 (1989)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 209 BP; 77 A; 40 C; 42 G; 50 T; 0 other;
B2
1
;ID   B3          DNA   ; ROD   ; 226 BP
;XX
;DE   SINE element, B2 subfamily.
;XX
;AC   .
;XX
;DT   22-APR-1997 (Rel. 2.03, Created)
;DT   09-OCT-1997 (Rel. 2.09, Last updated, Version 4)
;XX
;KW   SINE; Interspersed Repeat; B2; B3.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Kalb,F.V., Glasser,S., King,D. and Lingrel,B.J.
;RT   A cluster of repetitive elements within a 700 base pair region
;RT   in the mouse genome.
;RL   Nucleic Acids Res 11, 2177-2184 (1983)
;XX
;RN   [2]  (bases 1 to 226)
;RA   Lee,I., Westaway,D., Smit,A.F., Cooper,C., Yao,H., Prusiner,B.S.
;RA   and Hood,L.
;RT   Complete Structure and Organization of Three Mammalian Prion
;RT   Chromosomal Regions.
;RL   Unpublished (1996)
;XX
;CC   The tRNA-like region of B3 is very similar to that of B2.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 226 BP; 62 A; 64 C; 53 G; 42 T; 5 other;
B3
1
;ID   B3A         DNA   ; ROD   ; 211 BP
;XX
;DE   SINE element, B2 subfamily.
;XX
;AC   .
;XX
;DT   26-SEP-1997 (Rel. 2.08, Created)
;DT   09-OCT-1997 (Rel. 2.09, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; B2; B3; B3A.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Kalb,F.V., Glasser,S., King,D. and Lingrel,B.J.
;RT   A cluster of repetitive elements within a 700 base pair region
;RT   in the mouse genome.
;RL   Nucleic Acids Res 11, 2177-2184 (1983)
;XX
;RN   [2]  (bases 1 to 210)
;RA   Smit,A.F.
;RT   B3A.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   The tRNA-like region of B3A is very similar to that of B2 and
;CC   B3.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 211 BP; 58 A; 64 C; 48 G; 37 T; 4 other;
B3A
1
;ID   BC1         DNA   ; ROD   ; 76 BP
;XX
;DE   BC1 (identifier) repetitive sequence - a consensus.
;XX
;AC   .
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; BC1; Repetitive sequence.
;XX
;OS   Rattus norvegicus
;XX
;OC   Rattus norvegicus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Rattus.
;XX
;RN   [1]
;RA   Milner,J.R., Bloom,E.F., Lai,C., Lerner,A.R. and Sutcliffe,G.J.
;RT   Brain-specific genes have identifier sequences in their introns.
;RL   Proc. Natl. Acad. Sci. USA 81, 713-717 (1984)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 76 BP; 11 A; 18 C; 29 G; 18 T; 0 other;
BC1
1
;ID   BGLII       DNA   ; ROD   ; 326 BP
;XX
;DE   Mouse Bgl II repeat fragment (clone 51B).
;XX
;AC   X01145
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
;XX
;KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; BGLII;
;KW   Repetitive sequence.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 326)
;RA   Propst,F. and Vande Woude,F.G.
;RT   A novel transposon-like repeat interrupted by an LTR element
;RT   occurs in a cluster of B1 repeats in the mouse c-mos locus.
;RL   Nucleic Acids Res 12, 8381-8392 (1984)
;XX
;DR   Positions      11     336  Accession No        X01145 GenBank
;XX
;SQ   Sequence 326 BP; 106 A; 41 C; 105 G; 74 T; 0 other;
BGLII
1
;ID   BILBO       DNA   ; DRO   ; 5530 BP
;XX
;DE   Drosophila subobscura non-LTR retrotransposon BILBO.
;XX
;AC   U73803
;XX
;DT   13-MAR-1998 (Rel. 3.02, Created)
;DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
;XX
;KW   Non-LTR Retrotransposon; Interspersed Repeat; BILBO; LINE;
;KW   reverse transcriptase.
;XX
;OS   Drosophila subobscura
;XX
;OC   Drosophila subobscura
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 5530)
;RA   Blesa,D. and Martinez-Sebastian,J.M.
;RT   bilbo, a non-LTR retrotransposon of Drosophila subobscura: a
;RT   clue to the evolution of LINE-like elements in Drosophila.
;RL   Mol. Biol. Evol 14(11), 1145-1153 (1997)
;XX
;RN   [2]  (bases 1 to 5530)
;RA   Blesa,D. and Martinez-Sebastian,J.M.
;RT   BILBO.
;RL   Direct Submission to Genbank (04-OCT-1996)Genetica, Universidad
;RL   de Valencia, Calle Dr. Moliner, 50, Burjassot, Valencia 46100,
;RL   Spain
;XX
;CC   BILBO is similar to retrotransposons TRIM and LOA. Sequence
;CC   analysis
;CC   showed a 5' untranslated region (UTR), an open reading frame
;CC   (ORF)
;CC   with no RNA-binding domains, a downstream ORF that had
;CC   structural
;CC   homology to that of the I factor, and, finally, a 3' UTR which
;CC   ended
;CC   in several 5-nt repeats [1].
;XX
;DR   Positions     536    6065  Accession No        U73803 GenBank
;XX
;SQ   Sequence 5530 BP; 1602 A; 1458 C; 1406 G; 1064 T; 0 other;
BILBO
1
;ID   BOV2        DNA   ; MAM   ; 560 BP
;XX
;DE   B.taurus DNA for SINE sequence Bov-2.
;XX
;AC   X64125
;XX
;DT   22-1995 (Rel. 1.11, Created)
;DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; BOV2; BTBOV2;
;KW   Short interspersed repeat.
;XX
;OS   Bos taurus
;XX
;OC   Bos taurus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
;OC   Bovinae; Bos.
;XX
;RN   [1]  (bases 1 to 560)
;RA   Lenstra,A.J.
;RT   Direct submission.
;RL   Direct Submission to EMBL/GenBank/DDBJ (10-JAN-1992). J.A.
;RL   Lenstra, Inst. of Infectious Diseases and Immun., School of
;RL   Veterinary Medicine, University of Utrecht, Yalelaan 1, 3584
;RL   Utrecht, THE NETHERLANDS
;XX
;RN   [2]  (bases 1 to 560)
;RA   Lenstra,A.J., van Boxtel,A.J., Zwaagstra,A.K. and Schwerin,M.
;RT   Short interspersed nuclear element (SINE) sequences of the
;RT   Bovidae.
;RL   Anim. Genet 24(1), 33-39 (1993)
;XX
;DR   Positions       1     560  Accession No        X64125 GenBank
;XX
;SQ   Sequence 560 BP; 169 A; 99 C; 164 G; 128 T; 0 other;
BOV2
1
;ID   BOVTA       DNA   ; MAM   ; 210 BP
;XX
;DE   SINE element; retroposon BOVTA.
;XX
;AC   .
;XX
;DT   22-APR-1997 (Rel. 2.03, Created)
;DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; BOVA; BOVA2; BOVTA; SINE element;
;KW   retroposon; tRNA.
;XX
;OS   Bos taurus
;XX
;OC   Bos taurus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
;OC   Bovinae; Bos.
;XX
;RN   [1]
;RA   Lenstra,A.J., Boxtel,A.J., Zwaagstra,A.K. and Schwerin,M.
;RT   Short interspersed nuclear element (SINE) sequences of the
;RT   Bovidae.
;RL   Anim Genet 24, 33-39 (1993)
;XX
;RN   [2]
;RA   Okada,N. and Hamada,M.
;RT   The 3' ends of tRNA-derived SINEs originated from the 3' ends of
;RT   LINEs: A new example from the bovine genome.
;RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997)
;XX
;RN   [3]
;RA   Kapitonov,V.V.
;RT   BOVTA.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   Retroposon; (CA)n tail; 5-15 bp target site duplications.
;CC   5' end related to tRNA (~80 bp) is followed by the BOVA monomer.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 210 BP; 54 A; 53 C; 64 G; 38 T; 1 other;
BOVTA
1
;ID   BTALUL1     DNA   ; MAM   ; 311 BP
;XX
;DE   Cow Alu-like repetitive sequence.
;XX
;AC   X00376
;XX
;DT   22-1995 (Rel. 1.11, Created)
;DT   22-1995 (Rel. 1.11, Last updated, Version 1)
;XX
;KW   SINE1; SINE; Interspersed Repeat; Alu-like repetitive sequence;
;KW   BTALUL1; Repetitive sequence.
;XX
;OS   Bos taurus
;XX
;OC   Bos taurus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
;OC   Bovinae; Bos.
;XX
;RN   [1]
;RA   Schimenti,C.J. and Duncan,H.C.
;RT   Ruminant globin gene structures suggest an evolutionary role for
;RT   Alu-type repeats.
;RL   Nucleic Acids Res 12(3), 1641-1655 (1984)
;XX
;DR   Positions    1258    1568  Accession No        X00376 GenBank
;XX
;SQ   Sequence 311 BP; 76 A; 73 C; 84 G; 78 T; 0 other;
BTALUL1
1
;ID   BURDOCK_I   DNA   ; DRO   ; 5860 BP
;XX
;DE   Drosophila melanogaster BURDOCK retrotransposon - internal
;DE   sequence.
;XX
;AC   U89994
;XX
;DT   13-MAR-1998 (Rel. 3.02, Created)
;DT   13-MAR-1998 (Rel. 3.02, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; BURDOCK_I;
;KW   BURDOCK_LTR; gag; Gypsy superfamily; pol.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 5860)
;RA   Tchurikov,A.N., Gerasimova,I.T., Johnson,K.T., Barbakar,I.N.,
;RA   Kenzior,L.A. and Georgiev,P.G.
;RT   Mobile elements and transposition events in the cut locus of
;RT   Drosophila melanogaster.
;RL   Mol. Gen. Genet 219(1-2), 241-248 (1989)
;XX
;RN   [2]  (bases 1 to 5860)
;RA   Tchurikov,A.N., Ponomarenko,A.N. and Krasnov,N.A.
;RT   burdock - a novel retrotransposon element in Drosophila
;RT   melanogaster.
;RL   Unpublished
;XX
;RN   [3]  (bases 1 to 5860)
;RA   Tchurikov,A.N., Ponomarenko,A.N. and Krasnov,N.A.
;RT   BURDOCK_I.
;RL   Direct Submission to Genbank (19-FEB-1997)Genome Organization,
;RL   Engelhardt Institute of Molecular Biology, Russian Academy of
;RL   Sciences, Vavilov Str. 32, Moscow 117984, Russia
;XX
;CC   BURDOCK is a short retrotransposon with long terminal repeats
;CC   and a
;CC   single open reading frame (ORF). Its LTR is reported in Repbase
;CC   as
;CC   BURDOK_LTR. LTR's flanking BURDOCK_I in U89994 GenBank sequence
;CC   are
;CC   identical, it may indicate that BURDOCK is an active element.
;CC   The polypeptide encoded by the BURDOCK ORF contains two adjacent
;CC   regions homologous to the gag and pol polyproteins of the gypsy
;CC   mobile element.
;CC   The target site sequence of the BURDOCK insertions is similar to
;CC   the Drosophila topoisomerase II cleavage site.
;XX
;DR   Positions     276    6135  Accession No        U89994 GenBank
;XX
;SQ   Sequence 5860 BP; 2027 A; 1151 C; 1117 G; 1565 T; 0 other;
BURDOCK_I
1
;ID   CANDYSTRIPE1 DNA   ; PLN   ; 23018 BP
;XX
;DE   CANDYSTRIPE1 is a putative En/Spm-like nonautonomous DNA
;DE   transposon.
;XX
;AC   AF206660
;XX
;DT   13-APR-2000 (Rel. 5.04, Created)
;DT   19-AUG-2005 (Rel. 9.07, Last updated, Version 3)
;XX
;KW   EnSpm; DNA transposon; Interspersed Repeat;
;KW   3 bp target site duplication; CACTA-like TIRs; CANDYSTRIPE1;
;KW   En/Spm superfamily.
;XX
;OS   Sorghum bicolor
;XX
;OC   Sorghum bicolor
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Sorghum.
;XX
;RN   [1]  (bases 1 to 23018)
;RA   Chopra,S., Brendel,V., Zhang,J., Axtell,D.J. and Peterson,T.
;RT   Molecular characterization of a mutable pigmentation phenotype
;RT   and isolation of the first active transposable element from
;RT   Sorghum bicolor.
;RL   Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999)
;XX
;CC   CANDYSTRIPE1 does not encode for a transposase and it may be a
;CC   composite nonautonomous DNA transposon.
;XX
;DR   Positions       1   23018  Accession No      AF206660 GenBank
;XX
;SQ   Sequence 23018 BP; 6807 A; 4788 C; 4603 G; 6820 T; 0 other;
CANDYSTRIPE1
1
;ID   CER11-LTR_CE DNA   ; CEL   ; 559 BP
;XX
;DE   CER11-LTR_CE is a long terminal repeat of the CER11_CE LTR
;DE   retrotransposon.
;XX
;AC   .
;XX
;DT   06-AUG-2003 (Rel. 8.07, Created)
;DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; CER11-I_CE;
;KW   CER11-LTR_CE; CER11_CE.
;XX
;OS   Caenorhabditis elegans
;XX
;OC   Caenorhabditis elegans
;OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
;OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
;XX
;RN   [1]  (bases 1 to 559)
;RA   Bowen,J.N. and McDonald,F.J.
;RT   Genomic analysis of Caenorhabditis elegans reveals ancient
;RT   families of retroviral-like elements.
;RL   Genome Research 9(10), 924-935 (1999)
;XX
;RN   [2]  (bases 1 to 559)
;RA   Ganko,W.E., Fielman,T.K. and McDonald,F.J.
;RT   Evolutionary history of Cer elements and their impact on the C.
;RT   elegans genome.
;RL   Genome Research 11(12), 2066-2074 (2001)
;XX
;RN   [3]  (bases 1 to 559)
;RA   Ganko,W.E., Bhattacharjee,V., Bowen,N.J. and McDonald,F.J.
;RT   CER11_CE: a family of LTR retrotransposons from C. elegans.
;RL   Direct Submission to Repbase Update (APR-2003)
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 559 BP; 196 A; 85 C; 74 G; 204 T; 0 other;
CER11-LTR_CE
1
;ID   CEREBA_HV_I DNA   ; PLN   ; 5999 BP
;XX
;DE   Hordeum vulgare gypsy-type retrotransposon, CEREBA_HV_I,
;DE   internal region.
;XX
;AC   AY040832
;XX
;DT   16-OCT-2002 (Rel. 7.09, Created)
;DT   16-OCT-2002 (Rel. 7.09, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; CEREBA_HV_I;
;KW   Gypsy superfamily; TREP99; internal region.
;XX
;OS   Hordeum vulgare
;XX
;OC   Hordeum vulgare
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Pooideae; Triticeae; Hordeum.
;XX
;RN   [1]
;RA   Hudakova,S., Michalek,W., Presting,G.G., ten Hoopen,R.,
;RA   dos Santos,K., Jasencakova,Z. and Schubert,I.
;RT   Sequence organization of barley centromeres.
;RL   Nucleic Acids Res 29(24), 5029-5035 (2001)
;XX
;RN   [2]
;RA   Hudakova,S.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (from TREP) (02-APR-2002).
;XX
;CC   misc_feature 1. .17
;CC   /note="PBS site"
;CC   misc_feature 5988. .5999
;CC   /note="PPT site"
;CC   Internal region of CEREBA_HV retrotransposon.
;XX
;DR   Positions     258    6254  Accession No      AY040832 GenBank
;XX
;SQ   Sequence 5999 BP; 1648 A; 1196 C; 1312 G; 1835 T; 8 other;
CEREBA_HV_I
1
;ID   CERV2_INT   DNA   ; PRI   ; 7584 BP
;XX
;DE   A DNA sequence of chimpanzee endogenous retrovirus CERV2 -
;DE   internal portion.
;XX
;AC   .
;XX
;DT   17-AUG-2004 (Rel. 9.07, Created)
;DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
;XX
;KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; CERV2;
;KW   CERV2_INT; Chimpanzee endogenous retrovirus.
;XX
;OS   Pan troglodytes
;XX
;OC   Pan troglodytes
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
;XX
;RN   [1]  (bases 1 to 7584)
;RA   Skaletsky,H., Hughes,F.J. and Page,C.D.
;RT   Original sequence of an endogenous retrovirus CERV2.
;RL   Repbase Reports 4(7), 191-191 (2004)
;XX
;CC   Internal sequence of an endogenous retrovirus with ORFs
;CC   for gag (1671-2153), pol (2370-4154) and env (5670-6233).
;CC   CERV2 is absent from the human genome. It is similar to
;CC   Baboon endogenous retrovirus strain.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 7584 BP; 1971 A; 2229 C; 1774 G; 1610 T; 0 other;
CERV2_INT
1
;ID   CHARLIE10   DNA   ; HUM   ; 2822 BP
;XX
;DE   Primate Charlie10 repetitive element - a consensus.
;XX
;AC   .
;XX
;DT   27-2001 (Rel. 6.11, Created)
;DT   27-2001 (Rel. 6.11, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; CHARLIE10;
;KW   DNA transposon fossil; MER1_type family; hAT family.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 2822)
;RA   Smit,A.F.
;RT   A few more common, ancient interspersed repeats in the human
;RT   genome.
;RL   Repbase Reports 1(4), 19-19 (2001)
;XX
;CC   Consensus for an autonomous member of the MER1 branch of hAT DNA
;CC   transposons, closely related to the Charlie3 element.
;CC   MER5C is an internal deletion product of Charlie10. MER5A and B,
;CC   with 65000 copies by far the most numerous DNA transposon
;CC   remnants in our genome, have closely matching termini, but a
;CC   dissimilar (short) internal region. Charlie10 may have caused
;CC   their distribution, in analogy to the transposition of Ds1 by
;CC   Activator.
;CC   The gene KIAA1923 is a domesticated Charlie10 DNA transposon.
;CC   There are a few dozen full-length copies in the genome; average
;CC   substitution level of the copies is 22-23% (19% divergence from
;CC   consensus).
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 2822 BP; 961 A; 431 C; 512 G; 906 T; 12 other;
CHARLIE10
1
;ID   CHARLIE5    DNA   ; ROD   ; 2612 BP
;XX
;DE   Primate CHARLIE5 repetitive element - a consensus.
;XX
;AC   .
;XX
;DT   31-MAY-2001 (Rel. 6.04, Created)
;DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 2)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; CHARLIE5; MER1 family;
;KW   MER3; MER33; hAT superfamily.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Jurka,J.
;RT   Novel families of interspersed repetitive elements from the
;RT   human genome.
;RL   Nucleic Acids Res 18(1), 137-141 (1990)
;XX
;RN   [2]
;RA   Jurka,J., Kaplan,J.D., Duncan,H.C., Walichiewicz,J.,
;RA   Milosavljevic,A., Murali,G. and Solus,F.J.
;RT   Identification and characterization of new human medium
;RT   reiteration frequency repeats.
;RL   Nucleic Acids Res 21, 1273-1279 (1993)
;XX
;RN   [3]
;RA   Smit,A.F. and Riggs,D.A.
;RT   Tiggers and other DNA transposon fossils in the human genome.
;RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996)
;XX
;RN   [4]  (bases 1 to 2612)
;RA   Smit,A.F.
;RT   CHARLIE5.
;RL   Direct Submission to Repbase Update (FEB-1998)
;XX
;RN   [5]  (bases 1 to 2612)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (FEB-2000)
;XX
;CC   CHARLIE5 is a hobo-Activator-TAM3 (hAT) like DNA transposon. An
;CC   ORF from
;CC   < 841 to 2439 encoded a transposase related to the transposases
;CC   of other
;CC   Charlies and 50% similar to the human protein AC004883. Copies
;CC   differ
;CC   from the consensus by 16% on average. Common coamplified
;CC   internal
;CC   deletion products are bp 1-63<>2352-2612 (MER33) and
;CC   1-171<>2269-2612.
;CC   MER3 appears to be a recombinant product of 5' fragments end of
;CC   CHARLIE5.
;XX
;DR   [5] (Consensus)
;XX
;SQ   Sequence 2612 BP; 939 A; 349 C; 444 G; 875 T; 5 other;
CHARLIE5
1
;ID   CHRL        DNA   ; MAM   ; 168 BP
;XX
;DE   Cetartiodactyl CHR-like SINE type sequence - a consensus.
;XX
;AC   .
;XX
;DT   19-2003 (Rel. 8.11, Created)
;DT   19-2003 (Rel. 8.11, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; CHR-1; CHR-2; CHRL;
;KW   non-LTR retrotransposon.; tRNA.
;XX
;OS   Cetartiodactyla
;XX
;OC   Cetartiodactyla
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Nikaido,M., Matsuno,F., Abe,H., Shimamura,M., Hamilton,H.,
;RA   Matsubayashi,H. and Okada,N.
;RT   Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible
;RT   evidence for the monophyletic origin of toothed whales.
;RL   Mamm. Genome 12(12), 909-915 (2001)
;XX
;RN   [2]
;RA   Shimamura,M., Abe,H., Nikaido,M., Ohshima,K. and Okada,N.
;RT   Genealogy of families of SINEs in cetaceans and artiodactyls:
;RT   the presence of a huge superfamily of tRNA(Glu)-derived families
;RT   of SINEs.
;RL   Mol. Biol. Evol 16(8), 1046-1060 (1999)
;XX
;RN   [3]
;RA   Nomura,O., Lin,H.Z., Wada,Y. and Yasue,H.
;RT   A SINE species from hippopotamus and its distribution among
;RT   animal species.
;RL   Mamm. Genome 9(7), 550-555 (1998)
;XX
;RN   [4]
;RA   Shimamura,M., Yasue,H., Ohshima,K., Abe,H., Kato,H., Kishiro,T.,
;RA   Goto,M., Munechika,I. and Okada,N.
;RT   Molecular evidence from retroposons that whales form a clade
;RT   within even-toed ungulates.
;RL   Nature 388(6643), 666-670 (1997)
;XX
;RN   [5]
;RA   Kohany,O. and Jurka,J.
;RT   CHRL consensus.
;RL   Direct Submission to Repbase Update (2003)
;XX
;CC   Average similarity to consensus 84%.
;XX
;DR   [5] (Consensus)
;XX
;SQ   Sequence 168 BP; 47 A; 51 C; 39 G; 30 T; 1 other;
CHRL
1
;ID   CLAUDIA1_TM DNA   ; PLN   ; 7563 BP
;XX
;DE   Triticum monococcum copia-type retrotransposon, CLAUDIA1_TM.
;XX
;AC   AF459639
;XX
;DT   16-OCT-2002 (Rel. 7.09, Created)
;DT   16-OCT-2002 (Rel. 7.09, Last updated, Version 1)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat; CLAUDIA1_TM;
;KW   CLAUDIA_116F2-1; COPIA superfamily; LTR; retrotransposon;
;KW   TREP250.
;XX
;OS   Triticum monococcum
;XX
;OC   Triticum monococcum
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Pooideae; Triticeae; Triticum.
;XX
;RN   [1]
;RA   SanMiguel,P., Ramakrishna,W., Bennetzen,L.J., Busso,C.
;RA   and Dubcovsky,J.
;RT   Transposable elements, genes and recombination in a 215-kb
;RT   contig from wheat chromosome 5A.
;RL   Unpublished
;XX
;RN   [2]
;RA   Dubcovsky,J.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (from TREP) (02-APR-2002).
;XX
;CC   5' LTR and internal sequence. The exact end of 5' LTR is
;CC   unknown.
;XX
;DR   Positions   48234   51226  Accession No      AF459639 GenBank
;XX
;SQ   Sequence 7563 BP; 2148 A; 1875 C; 1634 G; 1906 T; 0 other;
CLAUDIA1_TM
1
;ID   COPIA2-I_LC DNA   ; PLN   ; 10324 BP
;XX
;DE   L. corniculatus copia-like LTR retrotranposon - internal
;DE   consensus sequence.
;XX
;AC   .
;XX
;DT   24-MAR-2005 (Rel. 10.02, Created)
;DT   09-JUN-2005 (Rel. 10.02, Last updated, Version 2)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat; 5 bp TSDs;
;KW   COPIA2-I_LC; copia-like retrotransposon; gag-pol; integrase.
;XX
;OS   Lotus corniculatus var. japonicus
;XX
;OC   Lotus corniculatus var. japonicus
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids I; Fabales; Fabaceae;
;OC   Papilionoideae; Loteae; Lotus; Lotus corniculatus.
;XX
;RN   [1]  (bases 1 to 10324)
;RA   Gentles,A. and Jurka,J.
;RT   COPIA2_LC: L. corniculatus copia-type LTR retrotransposon.
;RL   Repbase Reports 5(2), 33-33 (2005)
;XX
;RN   [2]  (bases 1 to 10324)
;RA   Toth,G.
;RT   Copia-type LTR retrotransposon from rice.
;RL   Direct Submission to Repbase Update (09-JUN-2005)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 10324 BP; 3055 A; 2199 C; 2147 G; 2880 T; 43 other;
COPIA2-I_LC
1
;ID   CR1-1_DR    DNA   ; ZEB   ; 4985 BP
;XX
;DE   CR1-1_DR is a CR1-like non-LTR retrotransposon - a consensus.
;XX
;AC   .
;XX
;DT   02-MAY-2002 (Rel. 7.04, Created)
;DT   19-JUL-2005 (Rel. 7.04, Last updated, Version 2)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   AP endonuclease; CR1 clad; CR1-1_DR; CR1DR1; ORF1; ORF2;
;KW   reverse transcriptase.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 311 to 4303)
;RA   Jekosch,K.
;RT   CR1DR1: CR1-like repeat from Danio rerio.
;RL   Repbase Reports 2(2), 7-7 (2002)
;XX
;RN   [2]  (bases 1 to 4985)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   CR1-1_DR, a family of CR1-like non-LTR retrotransposons in
;RT   zebrafish.
;RL   Repbase Reports 2(4), 6-6 (2002)
;XX
;CC   CR1-1_DR is a family of CR1-like non-LTR retrotransposons and it
;CC   was active in zebrafish recently. The consensus sequence encodes
;CC   two proteins, CR1-1_DR1p (position 311-1216) and CR1-1_DR2p
;CC   (positions 1220-4300).
;CC   The 1027-aa CR1-1_DR2p protein is composed of AP endonuclease
;CC   (aa positions 72-225) and reverse transcriptase (aa positions
;CC   559-796). The 302-aa CR1-1_DR1p protein is distantly related to
;CC   proteins encoded by ORF1 in known CR1-like elements from
;CC   chicken,
;CC   pufferfish and turtle.
;CC   The consensus sequence [2] was reconstructed from 10 copies
;CC   that are ~1% divergent from it.
;CC   Approximately 1000 copies of CR1-1_DR are present in the
;CC   zebrafish
;CC   genome.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           311..1216
;FT                 /product="CR1-1_DR1p"
;FT                 /translation="MSLPSLSLCAGEASMEALELELEEVESQIRALVVRR
;FT                 SRLREQLLVVPNAKAVSSPKVRGNYNHIIPSTSTPRPSLSRPSAPGARLS
;FT                 QASFTPTPGYHGAWVQPRKVLPRSRGRTSPPVFEISTENRFSPLRESGPD
;FT                 VAIIGDSIVRHVRAASSKGNKVRTFCFPGARVRNISTQIPTILGAAESPG
;FT                 AVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRR
;FT                 GNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRA
;FT                 GAELLSDNISRLLRTI"
;FT   CDS           1220..4300
;FT                 /product="CR1-1_DR2p"
;FT                 /translation="LAGKNSQNSHYSHLDSCSPHLNISNAYLANPIETVS
;FT                 VPRIIRLRNKRTVCSRKNLVRIKPEKPVESENTNFVKLGLLNIRSLAPKA
;FT                 LIINEIITENNLNALCLTETWLKQNDYISLNEATPPGFLYKHEARQTGRG
;FT                 GGVASIFSDFLNIKQRNGLMFSSFEVLSLNVQLPDTIQKPMLSLALITIY
;FT                 RPPGPYVKFLKEFSDFISDLLVKTDKMLIVGDFNIHIDDANDTLGLAFMD
;FT                 LIHSLGIKQNVVGPTHRLKHTLDLILSYGIEVIDVDIIPQSDDITDHYLL
;FT                 LYKLCLPEISKPAPILRPSRTIVPSTKDEFINNLPDLSLFRNAPANSNDL
;FT                 DVVTSSMDAIFTSTLNTVAPIKLKKAREIKTIPWYNSHTRALKTATRALE
;FT                 RKWKKTNLEVFRIAYKDSMSSYRRALKSARTEHLRKLIENNHNNPRFLFN
;FT                 TISKLANNRSSLEQTTPPQISSDDFMNFFSNKIEGFRQKIGDAKLSAPAY
;FT                 TPNPVNISLNHNNNLHCFKIIEHEELVKIINSSKPATCMLDSIPTKLLKE
;FT                 LLPAIGEPLLNIINSSLSIGHVPNSYKLAVIKPIIKKPQLDTNNLANYRP
;FT                 ISNLPFMSKILEKVVSTQLCSFLQTNNIFEVFQSGFRAHHSTETALVKIT
;FT                 NDLLLAADRGCVSLLVLLDLSAAFDTIDHNILINRLKSTGVQGQALQWFK
;FT                 SYLTDRYQFVNLNGQPSQICPVKYGVPQGSVLGPLLFTIYMLPLGDIIRR
;FT                 HGISFHCYADDTQLYISTKPDETSELSKLTECIKDIKDWMTNNFLLLNSD
;FT                 KTELLLIGPKSCTQQISQLNLQLEGYKVSFSSTIKDLGVILDSNLTFKNH
;FT                 ISHVTKTAFFHLRNIAKLRNMLSISDAEKLVHAFMTSRLDYCNALFAGCP
;FT                 ASSINKLQLVQNAAARVLTRSRKYDHITPILSSLHWLPVKFRIEFKILLL
;FT                 TYKALNNLAPVYLTNLLSRYKPTRSLRSQNSGLLVVPRIAKSSKGGRAFS
;FT                 FMAPTLWNSLPDNVRGSDTLSQFKTRLKTYLFSKAYTQCIT"
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 4985 BP; 1464 A; 1202 C; 916 G; 1403 T; 0 other;
CR1-1_DR
1
;ID   CR1-5_SP    DNA   ; SPU   ; 4174 BP
;XX
;DE   A family of CR1 non-LTR retrotransposons - a partial consensus
;DE   sequence.
;XX
;AC   .
;XX
;DT   07-2004 (Rel. 9.11, Created)
;DT   07-2004 (Rel. 9.11, Last updated, Version 1)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   CR1 superfamily; CR1-5_SP.
;XX
;OS   Strongylocentrotus purpuratus
;XX
;OC   Strongylocentrotus purpuratus
;OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
;OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
;OC   Strongylocentrotidae; Strongylocentrotus.
;XX
;RN   [1]  (bases 1 to 4174)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   CR1-5_SP, a family of CR1 non-LTR retrotransposons in the sea
;RT   urchin genome.
;RL   Repbase Reports 4(11), 289-289 (2004)
;XX
;CC   CR1-5_SP is a family of CR1 non-LTR retrotransposons. The
;CC   consensus sequence was reconstructed from 10 copies 99%
;CC   identical to it. The 5' terminus of CR1-5_SP is not known. The
;CC   consensus encodes the 1047-aa CR1-5_SPp protein (pos. 1-3141)
;CC   that includes the CR1-like reverse transcriptase domain. The
;CC   3' terminus of CR1-5_SP is composed of the (TCTA)
;CC   microsatellite.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           1..3141
;FT                 /product="CR1-5_SPp"
;FT                 /translation="PSQRVNIELCCEITVSADKLAPNMLDNFGIIVVLSV
;FT                 IASLPHFIAESRPALLAGVTMEFQLVQNSIDTERYSDQYRYTKDELLSLR
;FT                 NTSHSRLPDNVFARIKELGIDKRRGCRAGSHKWRKIAVVEGRRRRTPKPP
;FT                 GVRAPQLIPIKTITTVSTDRQSQGNLPTIYMCNPRSLNNKLDEFSVVVHE
;FT                 LCCDVCVVTETWFRADQPESDFAVDDYLVFAKSRDSRRGGGVAIYAKPES
;FT                 MPKTVNFLPPHPHHEVIWLQLRPKRLPRDISCLYVAAVYSPPDNDCVNDL
;FT                 IQYLVNAIDDIKTRHGDAGVVILGDFNRADTSELTSTCNLRQVVRKATRG
;FT                 TAILDLILTDIHQWYSEPEILSPLGLGGDHNAVLWKPKLNKTNSKNKAVR
;FT                 KFVRPMKDSAIREFGQWISQHTWDDVMASSSAQEKCDKLYASLQNAMDEY
;FT                 LPMKSVKMHPRDKPWVTPYLKSLIGQRQKAFSNDRTEEWKRLRNKVQNKK
;FT                 TELKKNFYKDRVLKLKRENPSSWYKHLKIMTSSKTASNIIIPESPELDDL
;FT                 AIADCVNDHFANVSQDIPELDLQSLPAYLPTPKPQLTVQPHEVYKELNRI
;FT                 KPGKSSGPDGIPARIVKEFAVELASPLCEVLNSSYHSGSVPSQWKGAIIA
;FT                 PIPKEKAASSIDKQRPISLTDHFAKIAEVFIYRKLLADVRHQLDPKQFGA
;FT                 RAGRSTTHCLVEIYNFLCKRAELPSNVTSIVSTDFSRAFDRVDHTILIRK
;FT                 LITLEVHPWVIVWICSFLTDRQNQVRYHGELSSTRSMTAGVPQGTRLGPL
;FT                 LFLVLIDDALRESEVERWKYVDDMSLASAEPSNQHGQFMQNVLVNLEEWC
;FT                 NQNNVRLNPKKCNIMRVTFSKTPLPDRDFSLCNDVLQEVSAVKLLGVILQ
;FT                 RDLKWNDHVSVTISRASSRLYMLRRWKEFHLPAADLVTVYVGFVRPLLEY
;FT                 ACPVWHSSLTCAQSAALERIQKRALRLIFPGTSYNTSLDLARIVDLETRR
;FT                 KTLCINFATKASRSEVGSDWFTENNPTRNLRKNKRYREPRCRTNRYQNSP
;FT                 IPFMTKLLNFN"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 4174 BP; 1181 A; 907 C; 854 G; 1232 T; 0 other;
CR1-5_SP
1
;ID   CR1-9_SP    DNA   ; SPU   ; 2654 BP
;XX
;DE   CR1-9_SP is a non-LTR retrotransposon - a consensus sequence.
;XX
;AC   .
;XX
;DT   29-APR-2005 (Rel. 10.04, Created)
;DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   reverse transcriptase; CR1-9_SP.
;XX
;OS   Strongylocentrotus purpuratus
;XX
;OC   Strongylocentrotus purpuratus
;OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
;OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
;OC   Strongylocentrotidae; Strongylocentrotus.
;XX
;RN   [1]  (bases 1 to 2654)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   CR1-9_SP non-LTR retrotransposon from the sea urchin genome.
;RL   Repbase Reports 5(4), 81-81 (2005)
;XX
;CC   CR1-9_SP is a non-LTR retrotransposon that belongs to the CR1
;CC   clade.
;CC   Copies of CR1-9_SP are ~2% divergent form the consensus
;CC   sequence.
;CC   The consensus sequence is incomplete due to 5' truncations of
;CC   CR1-9_SP elements upon their retrotranspositions.
;CC   CR1-9_SP encodes a 810-aa protein (pos. 1-2430) composed of
;CC   the reverse transcriptase domains. The 3' terminus
;CC   of CR1-9_SP is composed of the (CTTCAAA) microsatellite.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           2..2029
;FT                 /product="CR1-9_CR"
;FT                 /translation="FNESFNTNLPLQRPAQPNYKKMPRPPWISKTLLRSI
;FT                 HRKNRLFYRYKTEPDEKNKRKYTHYRNKLTVILRVAKKQYYSRQFNIFKS
;FT                 DIKSTWKVINTVLNNKNKNQSDFKDIYVDGEHLQNNTSVANAFNSFFVNI
;FT                 GPNLARNIPDSNLPFHSFLRGNIPNSLFFLPTHETEVIDIVNNFKLKNSS
;FT                 GYDGITNVLLKKIIHVIVSPLTHIFNLSLTTGTVPNKMKIAKVIPIFKKG
;FT                 DQQDVGNYRPISLLTIFSKILEKIVYSRLIAFLNCNHVLSGSQFGFRKKH
;FT                 STAHALLLFINKIANAIDNVLHTAGIFLDFSKAFDTINHDILLHKLSHYG
;FT                 VRGRALEWFRSYLSGRKQFVYIDGSESTLQPITCGVPQGSLLGPLLFILY
;FT                 INDLKNSSEILSFILFADDSNLFCSHKNPETLLNTVNTELNCVFKWIQAN
;FT                 KLSLNINKTYFMLFSNSVSSLPGHIKINNVTINQVESTKFLGVYIDSKLT
;FT                 WKVHINCLCKLLSRNSGVMNKLKPFVPPHVMLLLYSTLILPYLNYCILAW
;FT                 GNSSITLMDKVNVVQKRAVRIINNVGFLAHTNMLFYNCNILKISDLHLYN
;FT                 IGIFMYELSKDNLPDAFVPFFFQRNNTIHSYPTRQTNHFHLPRTRTVFAN
;FT                 KTIIFTGPKFWNSLNNELVESPSINSFKRKLRCFLLSKYV"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 2654 BP; 826 A; 553 C; 346 G; 929 T; 0 other;
CR1-9_SP
1
;ID   CR1-Y3      DNA   ; VRT   ; 1216 BP
;XX
;DE   CR1 Non-LTR Retrotransposon from chicken.
;XX
;AC   .
;XX
;DT   06-SEP-2005 (Rel. 10.08, Created)
;DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Gallus
;XX
;OC   Gallus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
;OC   Phasianinae.
;XX
;RN   [1]  (bases 1 to 1216)
;RA   Smit,A.F.
;RT   CR1-Y3 - CR1 Non-LTR Retrotransposon from chicken.
;RL   Direct Submission to Repbase Update (06-SEP-2005)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1216 BP; 296 A; 251 C; 392 G; 276 T; 1 other;
CR1-Y3
1
;ID   CR1_B       DNA   ; VRT   ; 4081 BP
;XX
;DE   Gallus gallus CR1_B mother element.
;XX
;AC   .
;XX
;DT   14-SEP-2004 (Rel. 9.08, Created)
;DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1_B;
;KW   non-LTR; retrotransposon.
;XX
;OS   Gallus gallus
;XX
;OC   Gallus gallus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
;OC   Phasianinae; Gallus.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   CR1-B non-LTR retrotransposon.
;RL   Direct Submission to Repbase Update (SEP-2004)
;XX
;RN   [2]  (bases 1 to 4081)
;RA   Wicker,T., Robertson,J.S., Schulze,S.R., Feltus,F.A., Magrini,V.,
;RA   Morrison,J.A., Mardis,E.R., Wilson,R.K., Peterson,D.G.,
;RA   Paterson,A.H. and Ivarie,R.
;RT   The repetitive landscape of the chicken genome.
;RL   Genome Res 15(1), 126-136 (2005)
;XX
;CC   ORF-1_protein:
;CC   MGAPRRKVGVTKTVETQAEVPCSSRRKTVAKKTVESQTEDLCMHERKADGKICVATQTEVPSQD
;CC   ASTQVTGCVDCWSLAFAVPDDGGRTCIRCDQLNDLLSLVIDLKEEVERLRTIKDCEREIDRWCQ
;CC   SLSASRSWHTAEALHGACQPLPPCKQVVEGKQPADGAAVSSLSSPPPSSNLREEEEWKQVPARR
;CC   GGHPPSQPSSAPQVPLHNRFEALELEGGVSETVEGGPPVRLPRVKWSTPHLTTASTWKDGRVVV
;CC   IGDSLLRGTEGPVCQPDPTRREVCCLPGAQVRDISRKLPGLIRPSDYYPLLIIQAGRDEIVEKS
;CC   LRSIKKDFRGLGRVVDGAGVQVVFSSVPSVAGKGTERIQKTHLLNKWLRGWCKHRNFVGFFFDH
;CC   GAIYSAPGMMAADGSSLSLKGKRILAEELAGLIERSLN.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 4081 BP; 1007 A; 850 C; 1240 G; 843 T; 141 other;
CR1_B
1
;ID   CR1_F       DNA   ; VRT   ; 6509 BP
;XX
;DE   Gallus gallus CR1_F mother element.
;XX
;AC   .
;XX
;DT   14-SEP-2004 (Rel. 9.08, Created)
;DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1_F;
;KW   non-LTR; retrotransposon.
;XX
;OS   Gallus gallus
;XX
;OC   Gallus gallus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
;OC   Phasianinae; Gallus.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   CR1-F non-LTR retrotransposon.
;RL   Direct Submission to Repbase Update (SEP-2004)
;XX
;RN   [2]  (bases 1 to 6509)
;RA   Wicker,T., Robertson,J.S., Schulze,S.R., Feltus,F.A., Magrini,V.,
;RA   Morrison,J.A., Mardis,E.R., Wilson,R.K., Peterson,D.G.,
;RA   Paterson,A.H. and Ivarie,R.
;RT   The repetitive landscape of the chicken genome.
;RL   Genome Res 15(1), 126-136 (2005)
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           1780..2853
;FT                 /product="CR1_F_2p"
;FT                 /note="ORF1"
;FT                 /translation="MVSTRQRACTRKTVATQTEGLPRNVAVQVSGCRGCH
;FT                 SLLLPREDGKDATCVRCEQVDELLSLVVELREEVERLRTIRECEREIDWW
;FT                 SDSLRERCRDSVPQTVVDPFPCCSRAQRADSRQEKEWQQVPARKCRRPPP
;FT                 QPTTVPQVSLHNRFDALKPEGEVSEDKVGRLPPSVTKVRRSAPRLKTASS
;FT                 KKERKVIVVGDSLLRGTEGLICQPDPTRREVCCLPGARVRDISRKLPGLI
;FT                 HPSDYYPLLIVQAGSDEVADRSLRAIKNYFRGLGRLVDNAGMQVVFAGIP
;FT                 TVAGKDNAVTRKTHHINTWLRGWCKRKNLGFFDHGAIYLAPGLRFADGYH
;FT                 LSQRGKRTLAQELAGLVERSLN"
;FT   CDS           2859..5705
;FT                 /product="CR1_F_1p"
;FT                 /note="ORF2"
;FT                 /translation="MRGEGDKTRPARDEPGGTIIGLGVRREAQLKCVYTN
;FT                 AHSMGNKQEELEAIVQQASYDLVAITETWWDRSHDWSAAMDGYKLFRKDR
;FT                 QGRRGGGVALYVKECFGVTELMTGDNKVESLWVKIRGRADKADILVGVCY
;FT                 RPPNQDEETDELFYEQLVEAARSPAFVLMGDFNFPNICWEYNLAQKKQSR
;FT                 RFLEYTFQKEDSFLMQMIREPTRGAAPLDLLFTNREGLVGDVEIGGCLGQ
;FT                 SDHDMVEFSILGGVRRRNSKTATLDFQRADFELFRRLVGRVPWGSVLESK
;FT                 GVQDGWLLFKKEVLKAQEQAVPLSRKMSRRGRRPVWMNRELFLRLQEKKR
;FT                 IYLLWKKGRATRKEYKEVIKMCREKIRKAKAQLELNLAAGVKGNKKLFYK
;FT                 YINSKRRTRENLHSLLDEAGNVTTEDKEKADVLNAFFTSVFKSQTSYPQV
;FT                 SPLSDLAALAGEQTKPPTIHEETVRDLLHQLDCHKSMEPDEIHPRVLREL
;FT                 AEVIAEPLSIIYQRSLLTGEVPEDWRLANVTPISKKGCREDPGNSRPVSL
;FT                 TSVPGKIMEQIVLREITWHVQDNRGIRPSQHGFTKGRSCLTNLISFYDPV
;FT                 TRLVDEGKAVDVVYLDFSKAFETVSHSILLQKLAVRGLDRYTLGWVRNWL
;FT                 EGQAQRVVVNGVKSSWGPVTSGVPQRSVLGPVLFNVCIDDLDEGIECTLI
;FT                 KFADDTKLAGSVDLPEGREALQRDLDRLDSWAEANGMGFNKTKCRVLHFG
;FT                 RSNPRQCYRLRAEWLEDCVEEMDLGVLIDTRLNMSQWCAQVAKKANGILA
;FT                 CIRNSVASRNREVIVSLYSALARLHLEYCVQFWAPHCKKDIEALECVQRR
;FT                 ATKLVRGLEHRPYEEWLKELGLFSLEKRRLRGDLIALYNYLKGGCSELGV
;FT                 SLFSRVTVIEREGMASSCAREDSGWTLGNTTSLKGWSGTGMGCPEWWWSH
;FT                 RAWWCLKSIWMLC"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 6509 BP; 1708 A; 1359 C; 1804 G; 1638 T; 0 other;
CR1_F
1
;ID   CR1_GG      DNA   ; VRT   ; 4558 BP
;XX
;DE   Gallus gallus retrotransposon CR1, complete consensus sequence.
;XX
;AC   U88211
;XX
;DT   22-1995 (Rel. 1.11, Created)
;DT   28-FEB-2001 (Rel. 6.01, Last updated, Version 3)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1_GG;
;KW   GGU88211.
;XX
;OS   Gallus gallus
;XX
;OC   Gallus gallus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
;OC   Phasianinae; Gallus.
;XX
;RN   [1]  (bases 1 to 4558)
;RA   Haas,B.N., Grabowski,M.J., Sivitz,B.A. and Burch,B.J.
;RT   Chicken repeat 1 (CR1) elements, which define an ancient family
;RT   of vertebrate non-LTR retrotransposons, contain two closely
;RT   spaced open reading frames.
;RL   Gene 197(1-2), 305-309 (1997)
;XX
;RN   [2]  (bases 1 to 4558)
;RA   Haas,B.N., Grabowski,M.J., Sivitz,B.A. and Burch,B.J.
;RT   CR1_GG.
;RL   Direct Submission to Genbank (23-JAN-1997)Institute for Cancer
;RL   Research, Room197C, Fox Chase Cancer Center, 7701 Burholme Ave,
;RL   Philadelphia, PA 19111, USA
;XX
;DR   Positions       1    4558  Accession No        U88211 GenBank
;XX
;SQ   Sequence 4558 BP; 1162 A; 1007 C; 1439 G; 950 T; 0 other;
CR1_GG
1
;ID   CRE2        DNA   ; INV   ; 9595 BP
;XX
;DE   C.fasciculata retrotransposable element (CRE2).
;XX
;AC   U19151
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
;XX
;KW   CRE; Non-LTR Retrotransposon; Interspersed Repeat; CRE2;
;KW   integrase; retrotransposable element; reverse transcriptase.
;XX
;OS   Crithidia fasciculata
;XX
;OC   Crithidia fasciculata
;OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
;OC   Crithidia.
;XX
;RN   [1]  (bases 1 to 9595)
;RA   Teng,S., Wang,S. and Gabriel,A.
;RT   CRE2, a new site-specific non-LTR retrotransposon that
;RT   interrupts the mini-exon genes of Crithidia fasciculata.
;RL   Unpublished
;XX
;RN   [2]  (bases 1 to 9595)
;RA   Gabriel,A.
;RT   CRE2.
;RL   Direct Submission to Genbank (27-1994)Abram Gabriel, Molecular
;RL   Biology and Biochemistry, Rutgers University, CABM 306, 679 Hoes
;RL   Lane, Piscataway, NJ 08855, USA
;XX
;DR   Positions     417   10011  Accession No        U19151 GenBank
;XX
;SQ   Sequence 9595 BP; 2578 A; 2732 C; 2699 G; 1586 T; 0 other;
CRE2
1
;ID   CUMULE      DNA   ; PLN   ; 12078 BP
;XX
;DE   MuDR-type DNA transposon from muskmelon (a complete sequence).
;XX
;AC   AY582736
;XX
;DT   20-SEP-2005 (Rel. 10.09, Created)
;DT   20-SEP-2005 (Rel. 10.09, Last updated, Version 1)
;XX
;KW   MuDR; DNA transposon; Interspersed Repeat.
;XX
;OS   Cucumis melo
;XX
;OC   Cucumis melo
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids I; Cucurbitales; Cucurbitaceae;
;OC   Cucumis.
;XX
;RN   [1]  (bases 1 to 12078)
;RA   van Leeuwen,H., Garcia-Mas,J., Coca,M., Puigdomenech,P.
;RA   and Monfort,A.
;RT   Analysis of the melon genome in regions encompassing TIR-NBS-LRR
;RT   resistance genes.
;RL   Mol Genet Genomics 273(3), 240-251 (2005)
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           join(1165..3585,4345..5283)
;FT                 /product="CUMULE_1p"
;FT                 /translation="MAHVRILVRHGGEWDEGRRKYEGGVLKGIVVPKEIT
;FT                 HKDLQSELYDLAEVDPTKFDIKIRCIYEIKGEKEAPPFELSNDRDLKFYI
;FT                 LSENPLEVPLYLSFEPTSNRSMKVLNKDYNSVSGSNQVQNLNPHPPPIGM
;FT                 DRLDENEVDIGEVEGGLCHNMIGTNSAIWESYESYHSIDDTFTLESVEMY
;FT                 NELFDIPEQRDAPTKDCKGKGKVDYRSSSRKLKTKGSGWSEESSTSEELD
;FT                 VGQIFFCKRDLSMRLSVLAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLR
;FT                 AVRLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKSWVVGELIKSKFKGPG
;FT                 RIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRY
;FT                 GEALKFTNSGTIFHMELEDDRFFKYLFMAVGACVRGFLNCIRPVIVMDGT
;FT                 FLKNKYRGQLIVAVCLDGNNQIYPLAFGVVDRETDDSIQWFLEKLKGAIG
;FT                 EVPNLGFVTDRKTCFAKGISSVFPSAFHGLCVQHLSQNLHDKYKNDTVAT
;FT                 LFYNASRTYRESTFVEAWRHLLSFPNGSGKYLNDVGIARWSRVHCPGRRY
;FT                 NMMTTNIAESMNSILKEPRDLPIASFLENVRALLQPLVLGASRRSIKVTS
;FT                 TLTKWAELVIQKKQEGALTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTC
;FT                 KEFQAEQLPCSHAIAAARVRNINVYSLCANYYTNECLLAAYAEAVYPVGN
;FT                 QSDWKTSEDYVHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKQI
;FT                 GHNRLTCTNPISYTDKSSIQDFSSTLKGIFPNFSYYNVTLFLCLYFKRFN
;FT                 FCLQKLSLCSYIIIVKRLGFRVRLLSSIYYIHFRMAVPSEKYFPATVSCQ
;FT                 VHKIGSLIKDKLTKDQLQMFEKTIFGPLLNVNMVFNGQLIHHFLLRQIPE
;FT                 DGNADGICFSVLGKNVRFTQKEFNIITGLWPTNNPLEKDCDSKRLQSLLF
;FT                 GSENKKVITCLEIEEIFKNFEFTNDDDAVKVALAVFIETVMVGKDKKTQF
;FT                 DMDILGRVDDEEAFKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKKTRSS
;FT                 KAVSYYNIKGYVLAFQVIFISSYTLSKCQLNIKV"
;XX
;DR   Positions   90166  102243  Accession No      AY582736 EMBL/GenBank/DDBJ
;XX
;SQ   Sequence 12078 BP; 3988 A; 2252 C; 2226 G; 3612 T; 0 other;
CUMULE
1
;ID   Copia1-I_CR DNA   ; CHL   ; 6068 BP
;XX
;DE   Internal portion of the Copia1_CR retrotransposon.
;XX
;AC   .
;XX
;DT   13-MAY-2004 (Rel. 9.04, Created)
;DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat; 5-bp TSDs;
;KW   Copia1-I_CR; Copia1-LTR_CR; COPIA superfamily; endonuclease;
;KW   protease; reverse transcriptase.
;XX
;OS   Chlamydomonas reinhardtii
;XX
;OC   Chlamydomonas reinhardtii
;OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
;OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
;XX
;RN   [1]  (bases 1 to 6068)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Copia1_CR, a family of copia LTR retrotransposons present in the
;RT   Chlamydomonas reinhardtii genome.
;RL   Repbase Reports 4(4), 102-102 (2004)
;XX
;CC   Copia1-I_CR is an internal portion of the Copia1-CR LTR
;CC   retrotransposon, whose LTR is deposited in Repbase as
;CC   Copia1-LTR_CR. Copia1-I encodes a 1627 Copia1_CRp polyprotein
;CC   (pos. 435-5315) composed of the C2HC zinc finger, protease,
;CC   endonuclease, reverse transcriptase, RNase H. The PBS is
;CC   complementary
;CC   to an internal portion of tRNA Met.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           join(435..2084,2088..5315)
;FT                 /product="Copia1_CRp"
;FT                 /translation="MAGKLIKPSQVSELRAGDKDAFWDWVSNLKIVLKNN
;FT                 RMLDVVMPGIGVDGNGNFDAEDLKLDADARDFIESKVDSTLRLALTNAGT
;FT                 AKAAYDTIYAKFNPATVARKAELSRQLNMLRMQRGESVAVYCARARKLAH
;FT                 ELLELEIIMKELTEGEDILAASESSETNLVMWVLTGLPESWENFKDRMMD
;FT                 SASSTGDLGVTMDQLQSKMENREQRYQDGSGVGVSASAVAAIQVPPAPIY
;FT                 PAAQSQEDQVAVIAAALNRLGFQPRGAGHGGNNGGGDRPRKDMLRVKCYR
;FT                 CKQFGHYADKCPQGQQQQGQLGLGGGAGGSGSGQVPPLVAALAQLQGLYA
;FT                 YMGGAPQKAAPMMQQPAQTPQVAAMAAAAPAVAAPAAAAAAAATGVAPQQ
;FT                 GGAERVRTYRMFMMMAQSQAQTLPHGPSDWLLDSGCSSPVSYDPSDLFDL
;FT                 RPLLEPTFVQVADGRPCAATHIGNMILRTSLGNAEADAMMKDVLLVPELG
;FT                 VKALSISAMARAGVETTMGNAGAVCKSRDGEVVMRGRLCPRSGVYVISGR
;FT                 ALQPSAEQWAQFQQXRGDPSPPPHQEDQAVGGAAGCWAVVDRSGELWREL
;FT                 QAARSRADMLAVDRIHRCFGHLGHTRMLQLPDVVSGLPVTRSQIQLWAAT
;FT                 RGRCDACGLGKSARRRLSRQDQPRGATAPLQLVHTDVCGPLPAAACGSKY
;FT                 IVTVVDEYSKYSVLRFTRDRETVPYVLQSVLVLMETQCAPLRVKEIRSDR
;FT                 GGEYVGSVLADFCAAKGILQNFSAPYTPQLNGVAERLNQSLQRAGRAMLV
;FT                 DSKLDVKYWRLAAEAANAVRLRSPVRGLAATPHQLFTGVKPDASHMHVFG
;FT                 SKVYVHTPEPQRDHKFSPTGRAGRFIGWEPDGNYRVLVDSKLVVSRDVVF
;FT                 DEDRAANAGEPATATAAASAPPLDLRVDSSDSDNDSPPAEAAGVSGGPPA
;FT                 GQSNEQGRRNTSQQGAREQREAAPSAQELHVERQPGSGEAAAEASTSAVA
;FT                 SEPHARRRRRRKPLKPPAQGGAAAGEATAAGGAPNLAAATPPDKAERGGG
;FT                 VPATALPPQPRRSDRSRAAPVRLGFSAIVVVRGALVQVLAAAVKGPVGQD
;FT                 LPGGDEPTFEQAKQRPDWPLWQAAIQEELDSLRSLEVFQPAHPPAGAKAL
;FT                 AVRWVLKVKRDANGKAARWKARLVVKGYQQRPGRDFGETFAPTGRLASLR
;FT                 FLLAIVAARNLELHQIDVKTAFLHGRVEEEIYADLPPGCDLGDSELKLLL
;FT                 RKSLYGLRQAPRAWYGKLKETLERMGFVESDADPGLFVLWAEQGILFVLV
;FT                 HVDDMLMAAELLPLMDSTKKALNGHFAITDLGEASFYLGMRIDRDRANRT
;FT                 IKLSQERYTLDLLEAHGMSESKPVDTPMTVGTPLMRADKGGGELLGLGEA
;FT                 QRYRGIVGSLLYLANCTRPEISLAVGTLARFMAEPTEEHLKAAKRVLRYL
;FT                 KGTPGTGLVYGGHGLVLAGYAEPPSDAELSAESAVELKLAGYADADYAGC
;FT                 PNTRRSTTGYVFTLNGAAISWQSKLQPTVACSTVEAEYMAAGSATREALW
;FT                 LRKLGGDFGVLGSGPTVLLGDNQGAISLTRNPLHSAQTKHIDVMYHFVRE
;FT                 RVAMGDLAVEYVPTSEMVADVLTKPLDAVKFKKFRGELGLK"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 6068 BP; 1100 A; 1660 C; 2241 G; 1067 T; 0 other;
Copia1-I_CR
1
;ID   DANA        DNA   ; ZEB   ; 394 BP
;XX
;DE   Danio rerio (clone DANA-m1) DANA retroposon.
;XX
;AC   L42295
;XX
;DT   22-1995 (Rel. 1.11, Created)
;DT   22-1995 (Rel. 1.11, Last updated, Version 1)
;XX
;KW   MSAT; Satellite; Simple Repeat; DANA; SINE; microsatellite;
;KW   Repetitive element; retroposon.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 394)
;RA   Izsvak,Z., Ivics,Z., Garcia-Estefania,D., Fahrenkrug,C.S.
;RA   and Hackett,B.P.
;RT   DANA elements: a family of composite, tRNA-derived short
;RT   interspersed DNA elements associated with mutational activities
;RT   in zebrafish (Danio rerio).
;RL   Proc. Natl. Acad. Sci. U.S.A 93(3), 1077-1081 (1996)
;XX
;CC   misc_signal 1..64
;CC   /note="tRNA-related region"
;CC   misc_signal 11..22
;CC   /note="Pol III promoter A box; putative"
;CC   misc_feature 55..64
;CC   /note="Pol III promoter B box; putative"
;CC   repeat_region 231..250
;CC   /note="TG dinucleotide"
;CC   /rpt_family="microsatellite"
;CC   polyA_signal 368..373
;CC   /note="putative"
;CC   DNA is the first SINE isolated from zebrafish (Danio rerio)
;CC   exhibiting
;CC   all the hallmarks of these tRNA-derived elements. DANA is unique
;CC   in
;CC   its clearly defined substructure of distinct cassettes. In
;CC   contrast to
;CC   generic SINE elements, DANA appears to have been assembled by
;CC   insertions of short sequences into a progenitor, tRNA-derived
;CC   element.
;CC   Once associated with each other, these subunits were amplified
;CC   as a
;CC   new transposable element with such a remarkable success that
;CC   DANA-related sequences comprise approximately 10% of the modern
;CC   zebrafish genome. At least some of the sequences comprised by
;CC   the
;CC   full-length element were capable of movement, forming a new
;CC   group of
;CC   mobile, composite transposons, one of which caused an
;CC   insertional
;CC   mutation in the zebrafish no tail gene. Being present only in
;CC   the
;CC   genus Danio, and estimated to be as old as the genus itself,
;CC   DANA may
;CC   have played a role in Danio speciation by massive amplification
;CC   and
;CC   genome-wide dispersion. There are extensive DNA polymorphisms
;CC   between
;CC   zebrafish populations and strains detected by PCR amplification
;CC   using
;CC   primers specific to DANA, suggesting that the DANA element will
;CC   be
;CC   useful as a molecular tool for genetic and phylogenetic
;CC   analyses.
;XX
;DR   Positions       1     394  Accession No        L42295 GenBank
;XX
;SQ   Sequence 394 BP; 90 A; 81 C; 119 G; 104 T; 0 other;
DANA
1
;ID   DNA-2-3_DR  DNA   ; ZEB   ; 1765 BP
;XX
;DE   This is a nonautonomous DNA transposon - a consensus sequence.
;XX
;AC   .
;XX
;DT   24-MAR-2005 (Rel. 10.02, Created)
;DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous; DNA-2-3_DR;
;KW   nonautonomous.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 1765)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   DNA-2-3_DR, a family of nonautonomous DNA transposons from
;RT   zebrafish.
;RL   Repbase Reports 5(2), 35-35 (2005)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1765 BP; 632 A; 285 C; 247 G; 599 T; 2 other;
DNA-2-3_DR
1
;ID   DNAREP1_DM  DNA   ; DRO   ; 594 BP
;XX
;DE   DNAREP1_DM is a putative nonautonomous DNA transposable
;DE   sequence.
;XX
;AC   .
;XX
;DT   02-JUL-1999 (Rel. 4.06, Created)
;DT   19-SEP-2005 (Rel. 4.06, Last updated, Version 2)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous; ARS312_DM;
;KW   DNAREP1_DM; FORK_DM; nonautonomous DNA transposon; DINE-1; DINE;
;KW   Dr. D; mini-me; narep1; ARS320; INE1;
;KW   microsatellite initiating mobile element; Ars4.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 284 to 477)
;RA   Selick,H. and Kauffman,S.
;RT   Direct submission.
;RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania
;XX
;RN   [2]
;RA   Tudor,M., Mitchelson,A. and O'Hare,.K.
;RT   Direct submission.
;RL   Unpublished (1991)
;XX
;RN   [3]  (bases 1 to 594)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   DNAREP1_DM.
;RL   Direct Submission to Repbase Update (JUL-1999)
;XX
;CC   DNAREP1_DM is one of the most ambiguous repetitive elements in
;CC   the D.melanogaster genome. There are several thousand copies of
;CC   DNAREP1_DM in the genome. The average divergency between
;CC   DNAREP1_DM
;CC   copies and the consensus sequence is 20%. Presumably, DNAREP1_DM
;CC   has been mobilized in a common ancestors of Drosophiloidae since
;CC   its old age (>20 Myrs) and presence in different drosophilas.
;CC   It's possible that DNAREP1_DM was active in Brachycera since
;CC   significant part of DNAREP1_DM has been found in promoter region
;CC   of P450 gene (U09343) in the house fly genome [3].
;CC   DNAREP1_DM is classified as a nonautonomous DNA transposon
;CC   because of noticeable conservation of its termini and multiple
;CC   internal
;CC   deletions [3].
;CC   Previously reported ARS312 repeat [1] is a ~200 bp-long portion
;CC   of
;CC   DNAREP1_DM. DNAREP1_DM is a portion of FORK_DM direct repeat [2]
;CC   flanking forked gene suppressor (portion 435-949 of FORK_DM is
;CC   88% identical to DNAREP1_DM. FORK_DM has been removed from
;CC   Repbase
;CC   Update since its other portions are not repeats [3].
;CC   Putative relation of DNAREP1 to DNA transposons is also
;CC   supported
;CC   by the 79% similarity [3] between its 145 bp-long 3`-terminus
;CC   and
;CC   134 bp-long 3-terminus of P-like P_DG element in Drosophila
;CC   guanche.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 594 BP; 182 A; 99 C; 133 G; 180 T; 0 other;
DNAREP1_DM
1
;ID   DNAX-1_DR   DNA   ; ZEB   ; 693 BP
;XX
;DE   This is a nonautonomous DNA transposon.
;XX
;AC   .
;XX
;DT   17-NOV-2004 (Rel. 9.1, Created)
;DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous; DNAX-1_DR;
;KW   nonautonomous DNA transposon.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 693)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   DNAX-1_DR, a nonautonomous DNA transposon from zebrafish.
;RL   Repbase Reports 4(10), 260-260 (2004)
;XX
;CC   The genome harbors several thousand copies of DNAX-1_DR
;CC   elements that are ~90% identical to the consensus sequence.
;CC   DNAX-1_DR elements are characterized by 21-bp terminal
;CC   inverted repeats. Despite the relatively young age of these
;CC   elements, most of them are not flanked by target site
;CC   duplications.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 693 BP; 206 A; 130 C; 136 G; 212 T; 9 other;
DNAX-1_DR
1
;ID   ENSPM3_OS   DNA   ; ORY   ; 10837 BP
;XX
;DE   Rice En/Spm type autonomous DNA transposon, consensus.
;XX
;AC   .
;XX
;DT   24-MAR-2005 (Rel. 10.02, Created)
;DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
;XX
;KW   EnSpm; DNA transposon; Interspersed Repeat; CACTA-type;
;KW   ENSPM3_OS; En/Spm superfamily; TIR; Autonomous DNA transposon;
;KW   transposase.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 10837)
;RA   Gentles,A. and Jurka,J.
;RT   Rice DNA transposon ENSPM3_OS.
;RL   Repbase Reports 5(2), 38-38 (2005)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 10837 BP; 3120 A; 2277 C; 2607 G; 2823 T; 10 other;
ENSPM3_OS
1
;ID   ENSPM_OS    DNA   ; ORY   ; 9843 BP
;XX
;DE   En/Spm-like DNA transposon from rice (a consensus).
;XX
;AC   .
;XX
;DT   09-MAY-2005 (Rel. 10.05, Created)
;DT   03-JUN-2005 (Rel. 10.05, Last updated, Version 1)
;XX
;KW   EnSpm; DNA transposon; Interspersed Repeat; En/Spm; ENSPM_OS.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 9843)
;RA   Jurka,J. and Gentles,A.
;RT   En/Spm-like DNA transposon from rice.
;RL   Repbase Reports 5(5), 115-115 (2005)
;XX
;CC   There are 4 complete copies in the rice genome. The large ORF
;CC   encodes a Tnp2 type transposase. Elements are flanked by 3 bp
;CC   target site duplications, and have imperfect 54 bp terminal
;CC   inverted repeats.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           842..4187
;FT                 /product="ENSPM_OS_1p"
;FT                 /translation="MESREWMYHWPRFLSPYRNEVSKFIGIAKAHAEKNN
;FT                 MRKIICPCADCKNEIAWDFDDAFKVKEHLVTRGFMDKYEIWTRHGEEQVD
;FT                 GPENVVPTQVEDMVHDDGSVEDKIDLEEMLRHAEPEVLMGSARGLNNFEA
;FT                 LQKAAKEVLYDESKGCDSEFTTLRSVLELMRLKARHGWSDTSFDSLLELL
;FT                 QKMLPRPNSLPSSTYQAKKLICPLSLGVEKIHACVNHCILYRKEYASLDE
;FT                 CPTCGASRYKSNSNTGLEPSETTEGRQRKIPQLVMWYLPVKDRIKRIYSN
;FT                 PRDAELMRWHEEGRKKDGMIRHPADARQWINFDAQYREFAKDPRNIRFAL
;FT                 STDGVNPFGDMSSSHSTWPVLLTMYNLPTWLCQKRKYVLLCILIQGPRQP
;FT                 GIDIDVFLEPLLEDMADLWKEGLKVWDEYLREYFTVKAIIFVTINDYPAM
;FT                 FSVSGQIKGKTGCVICLNGTYYRYLPGSNKLVYMRHRRFLRTNHKYRKMK
;FT                 AEFDGTEETDPAPKPTSGEKVCAMTEKIVCEFGKMTKKPSKGTKRKKPEK
;FT                 NTKQGDSKKQDDSSKPDDKLPPPFKKHSIFFKYLPYWKDLEVRHAIDVMH
;FT                 LEKNVFDNIVGTLLDMPKKTKDGLQSRMDLVEMGIREELHPQEGEKNGKV
;FT                 YLPPACFTLTPEEKKSFCNSLRDVRVPIGFSSNISRLVSMKDLSVSGYNS
;FT                 HDCHVLLTVFLAIAIRAIKPEHLKVAITRLCYFFNAVSQKVISLEELGNL
;FT                 RTFAHETQCQLEMCFPPSFFDMMEHLIVHIVPQMVALGPLYLHQMWSYER
;FT                 YMAVLKGYVRNRAHPEGSMVEGYSTEEVVECCIDYLKDGYAIGVPVPRHE
;FT                 GRLSGRGTIGKKRFVTHDHKSFQEAHFSVLHQFAIVEPYIDQHIELIRAN
;FT                 NKGRTTEWIMKEHKRLFIDWLRDLDLPEGQTTDEITMKRLACGPSTTVNS
;FT                 WQGYDINGYSFSTRARDNKTCTQNSGVRVEAIDEAGEKQSYFGFIEEIWE
;FT                 IDYGHTMQFPIFKCQWVKYPNGVNVDKFGLTVVDLASVGHKDDPWVLANR
;FT                 VAQVFYVKDPSNLKKDIVLPGKQKILGVDGVEDVEDYNQYDSMPLYSQFV
;FT                 QKIKNVETSTQKTVKPYMRTDGVGKNVKGX"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 9843 BP; 2893 A; 2001 C; 2369 G; 2577 T; 3 other;
ENSPM_OS
1
;ID   ERVB1_1-I_RN DNA   ; ROD   ; 6602 BP
;XX
;DE   Rat endogeneous beta retrovirus ERVB1_1, internal sequence.
;XX
;AC   BX883042
;XX
;DT   11-FEB-2004 (Rel. 9.01, Created)
;DT   11-FEB-2004 (Rel. 9.01, Last updated, Version 1)
;XX
;KW   Endogenous Retrovirus; Interspersed Repeat; ERVB1_1-I_RN;
;KW   RnERV-B1_NW_043429; endogeneous betaretrovirus; pol domain.
;XX
;OS   Rattus norvegicus
;XX
;OC   Rattus norvegicus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Rattus.
;XX
;RN   [1]  (bases 1 to 6602)
;RA   Baillie,J.G., Van de lagemaat,N.L., Baust,C. and Mager,L.D.
;RT   Multiple groups of endogeneous betaretroviruses in mice,rats and
;RT   other mammals.
;RL   J. Virol 78(11), 5784-5798 (2004)
;XX
;DR   Positions  172911  179904  Accession No      BX883042 Genbank
;XX
;SQ   Sequence 6602 BP; 1891 A; 1389 C; 1479 G; 1843 T; 0 other;
ERVB1_1-I_RN
1
;ID   ERVB5_4-I_RN DNA   ; ROD   ; 8124 BP
;XX
;DE   Rat endogeneous beta retrovirus ERVB5_4, internal sequence.
;XX
;AC   NW_047710
;XX
;DT   11-FEB-2004 (Rel. 9.01, Created)
;DT   11-FEB-2004 (Rel. 9.01, Last updated, Version 1)
;XX
;KW   Endogenous Retrovirus; Interspersed Repeat; ERVB5_4-I_RN;
;KW   RnERVB5_NW_043819; endogeneous betaretrovirus; gag domain;
;KW   pol domain; pro domain.
;XX
;OS   Rattus norvegicus
;XX
;OC   Rattus norvegicus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Rattus.
;XX
;RN   [1]  (bases 1 to 8124)
;RA   Baillie,J.G., Van de lagemaat,N.L., Baust,C. and Mager,L.D.
;RT   Multiple groups of endogeneous betaretroviruses in mice,rats and
;RT   other mammals.
;RL   J. Virol 78(11), 5784-5798 (2004)
;XX
;DR   Positions 17971804 17979936  Accession No     NW_047710 Genbank
;XX
;SQ   Sequence 8124 BP; 2280 A; 2038 C; 1629 G; 2177 T; 0 other;
ERVB5_4-I_RN
1
;ID   ERVB7_1-I_MM DNA   ; ROD   ; 6813 BP
;XX
;DE   Mouse endogeneous betaretrovirus ERVB7_1 internal sequence - a
;DE   consensus.
;XX
;AC   .
;XX
;DT   11-FEB-2004 (Rel. 9.01, Created)
;DT   11-FEB-2004 (Rel. 9.01, Last updated, Version 1)
;XX
;KW   Endogenous Retrovirus; Interspersed Repeat; ERVB7_1-I_MM; ETNERV;
;KW   MmERV-B7_BK001485; endogeneous betaretrovirus; gag domain; musD;
;KW   pol domain.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]
;RA   Baust,C., Gagnier,L., Baillie,J.G., Harris,J.M., Juriloff,M.D.
;RA   and Mager,L.D.
;RT   Structure and Expression of Mobile ETnII Retroelements and Their
;RT   Coding-Competent MusD Relatives in the Mouse.
;RL   J. Virol 77(21), 1144-1145 (2003)
;XX
;RN   [2]
;RA   Baillie,J.G., Van de lagemaat,N.L., Baust,C. and Mager,L.D.
;RT   Multiple groups of endogeneous betaretroviruses in mice, rats,
;RT   and other mammals.
;RL   J. Virol 78(11), 5784-5798 (2004)
;XX
;RN   [3]  (bases 1 to 6813)
;RA   Gentles,A. and Jurka,J.
;RT   Mouse betaretrovirus B7 consensus sequence, internal.
;RL   Direct Submission to Repbase Update (JAN-2004)
;XX
;CC   Appears to have recently retrotransposed - average similarity
;CC   to consensus 98%. 6 bp target site duplications. The mouse
;CC   genome has around 60 copies of the internal sequence, and 153
;CC   copies of the LTR.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 6813 BP; 1948 A; 1422 C; 1565 G; 1878 T; 0 other;
ERVB7_1-I_MM
1
;ID   GOLEM_B     DNA   ; ROD   ; 1205 BP
;XX
;DE   Nonautonomous DNA transposon.
;XX
;AC   .
;XX
;DT   25-FEB-1998 (Rel. 3.01, Created)
;DT   01-OCT-2005 (Rel. 5.09, Last updated, Version 5)
;XX
;KW   Mariner; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   35S; GOLEM; GOLEM_B; MER17; MER29; MER7; MER7B;
;KW   nonautonomous DNA transposon.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 944)
;RA   Drinkwater,D.R., Burgoyne,A.L. and Skinner,D.J.
;RT   Two human repetitive DNA elements: A new interspersed repeat
;RT   found in the factor IX gene, and a satellite 11 tandem repeat
;RT   sequence.
;RL   Nucleic Acids Res 14, 9541-9541 (1986)
;XX
;RN   [2]  (bases 1 to 944)
;RA   Kaplan,J.D. and Duncan,H.C.
;RT   Novel short interspersed repeat in human DNA.
;RL   Nucleic Acids Res 18, 192-192 (1990)
;XX
;RN   [3]  (bases 932 to 825)
;RA   Kaplan,J.D., Jurka,J., Solus,F.J. and Duncan,H.C.
;RT   Medium reiteration frequency repetitive sequences in the human
;RT   genome.
;RL   Nucleic Acids Res 17, 4731-4738 (1991)
;XX
;RN   [4]  (bases 546 to 326)
;RA   Skalnik,G.D., Strauss,C.E. and Orkin,H.S.
;RT   CCAAT displacement protein as a repressor of the myelomonocytic-
;RT   specific gp91-phox gene promoter.
;RL   J. Biol. Chem 266, 16736-16744 (1991)
;XX
;RN   [5]  (bases 1004 to 824)
;RA   Rubin,M.C., Leeflang,P.E., Rinehart,P.F. and Schmid,W.C.
;RT   Paucity of novel short interspersed repetitive elements (SINE)
;RT   families in human DNA and isolation of a novel MER repeat.
;RL   Genomics 18, 322-328 (1993)
;XX
;RN   [6]  (bases 79 to 546)
;RA   Jurka,J., Kaplan,J.D., Duncan,H.C., Walichiewicz,J.,
;RA   Milosavljevic,A., Murali,G. and Solus,F.J.
;RT   Identification and characterization of new human medium
;RT   reiteration frequency repeats.
;RL   Nucleic Acids Res 21, 1273-1279 (1993)
;XX
;RN   [7]  (bases 1 to 1)
;RA   Smit,A.F. and Riggs,D.A.
;RT   Tiggers and other DNA transposon fossils in the human genome.
;RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996)
;XX
;RN   [8]  (bases 1 to 1205)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   GOLEM_B.
;RL   Direct Submission to Repbase Update (1998).
;XX
;CC   Replaces MER17, MER29, MER7B.
;CC   Differs from GOLEM and GOLEM_A by internal deletions.
;CC   23 bp terminal inverted repeats, TA target site [7].
;CC   Orientation has been changed based on the reconstruction
;CC   of GOLEM internal sequence [8].
;XX
;DR   [8] (Consensus)
;XX
;SQ   Sequence 1205 BP; 386 A; 208 C; 217 G; 367 T; 27 other;
GOLEM_B
1
;ID   GRANDE1_ZD  DNA   ; PLN   ; 13769 BP
;XX
;DE   Z.diploperennis DNA for Grande1-4 retrotransposon.
;XX
;AC   X97604
;XX
;DT   04-MAR-1998 (Rel. 3.02, Created)
;DT   08-JUL-2004 (Rel. 9.06, Last updated, Version 2)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; GRANDE1ZD;
;KW   GRANDE1_ZD; Grande1-4; Gypsy-like; LTR; ZDGRAND14; direct repeat;
;KW   gag gene; pol gene; retrotransposon; tandem repeat.
;XX
;OS   Zea diploperennis
;XX
;OC   Zea diploperennis
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea.
;XX
;RN   [1]  (bases 1 to 13769)
;RA   Vicient,M.C.
;RT   Caractrizacion molecular de Grande1, un nuevo tipo de
;RT   retrotransposon del genero Zea. PhD thesis.
;RL   Unpublished
;XX
;RN   [2]  (bases 1 to 13769)
;RA   Martinez-Izquierdo,A.J.
;RT   GRANDE1_ZD.
;RL   Direct Submission to Genbank (26-APR-1996)J.A.
;RL   Martinez-Izquierdo, CID-CSIC, Jordi Girona Salgado, 18-26, E-
;RL   08034 Barcelona, SPAIN
;XX
;DR   Positions       6   13774  Accession No        X97604 GenBank
;XX
;SQ   Sequence 13769 BP; 3767 A; 3710 C; 3428 G; 2864 T; 0 other;
GRANDE1_ZD
1
;ID   GYCUME1_LTR DNA   ; PLN   ; 2646 BP
;XX
;DE   GYCUME1: Gypsy-type LTR rerotransposon from muskmelon (LTR
;DE   portion).
;XX
;AC   AF49972
;XX
;DT   04-SEP-2005 (Rel. 10.08, Created)
;DT   04-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Cucumis melo
;XX
;OC   Cucumis melo
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids I; Cucurbitales; Cucurbitaceae;
;OC   Cucumis.
;XX
;RN   [1]  (bases 1 to 2646)
;RA   van Leeuwen,H., Monfort,A., Zhang,H.B. and Puigdomènech,P.
;RT   Identification and characterisation of a melon genomic region
;RT   containing a resistance gene cluster from a constructed BAC
;RT   library. Microcolinearity between Cucumis melo and Arabidopsis
;RT   thaliana.
;RL   Plant Mol Biol 51(5), 703-718 (2003)
;XX
;CC   LTRs differ by deletions in minisatellite regions. No
;CC   substitutions.
;XX
;DR   Positions   54497   57142  Accession No       AF49972 EMBL/GenBank/DDBJ
;XX
;SQ   Sequence 2646 BP; 629 A; 581 C; 570 G; 866 T; 0 other;
GYCUME1_LTR
1
;ID   GYPSY13-LTR_AG DNA   ; ANG   ; 424 BP
;XX
;DE   GYPSY13-LTR_AG is an LTR of retrotransposon GYPSY13_AG - a
;DE   consensus sequence.
;XX
;AC   .
;XX
;DT   03-OCT-2003 (Rel. 8.09, Created)
;DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   4-bp TSD GYPSY13_AG; GYPSY13-I_AG; GYPSY13-LTR_AG; Gypsy clade;
;KW   mdg1 lineage.
;XX
;OS   Anopheles gambiae str. PEST
;XX
;OC   Anopheles gambiae str. PEST
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
;OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
;XX
;RN   [1]  (bases 1 to 424)
;RA   Tubio,M.J., Costas,C.J. and Naveira,F.H.
;RT   GYPSY13_AG, a member of the mdg1 lineage of the Ty3/gypsy group
;RT   of LTR retrotransposons in Anopheles gambiae.
;RL   Repbase Reports 3(9), 169-169 (2003)
;XX
;CC   GYPSY13-LTR_AG is a long terminal repeat of GYPSY13_AG (its
;CC   internal
;CC   portion is deposited as GYPSY13-I_AG).
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 424 BP; 171 A; 62 C; 79 G; 112 T; 0 other;
GYPSY13-LTR_AG
1
;ID   GYPSY2-I_MT DNA   ; PLN   ; 4619 BP
;XX
;DE   Internal consensus of M. truncatula gypsy element.
;XX
;AC   .
;XX
;DT   31-JUL-2005 (Rel. 10.07, Created)
;DT   04-AUG-2005 (Rel. 10.07, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Medicago truncatula
;XX
;OC   Medicago truncatula
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids I; Fabales; Fabaceae;
;OC   Papilionoideae; Trifolieae; Medicago.
;XX
;RN   [1]  (bases 1 to 4619)
;RA   Gentles,A. and Jurka,J.
;RT   Gypsy-like retroelement from Medicago truncatula.
;RL   Repbase Reports 5(7), 175-175 (2005)
;XX
;CC   1619 bp LTR deposited as GYPSY2-LTR_MT.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 4619 BP; 1430 A; 802 C; 957 G; 1423 T; 7 other;
GYPSY2-I_MT
1
;ID   GYPSY39-I_AG DNA   ; ANG   ; 6337 BP
;XX
;DE   GYPSY39-I_AG is an internal portion of retrotransposon
;DE   GYPSY39_AG - a consensus sequence.
;XX
;AC   .
;XX
;DT   16-APR-2004 (Rel. 9.03, Created)
;DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSD gag;
;KW   AP protease; GYPSY lineage; GYPSY39-I_AG; GYPSY39-LTR_AG;
;KW   Gypsy clade; RNase-H; reverse transcriptase;
;KW   integrase GYPSY39_AG.
;XX
;OS   Anopheles gambiae str. PEST
;XX
;OC   Anopheles gambiae str. PEST
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
;OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
;XX
;RN   [1]  (bases 1 to 6337)
;RA   Tubio,M.J., Costas,C.J. and Naveira,F.H.
;RT   GYPSY39_AG, a member of the Gypsy lineage of the Ty3/gypsy group
;RT   of LTR retrotransposons in Anopheles gambiae.
;RL   Repbase Reports 4(3), 70-70 (2004)
;XX
;CC   GYPSY39_AG is a family of gypsy-like LTR retrotransposons
;CC   that, according to the aminoacid sequence of its Reverse
;CC   Transcriptase,
;CC   RNase and Integrase is
;CC   phylogenetically grouped with representatives of the GYPSY
;CC   lineage of other organisms.
;CC   GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG, GYPSY44_AG,
;CC   GYPSY45_AG,
;CC   GYPSY46_AG and GYPSY47_AG are other
;CC   members of this same lineage in Anopheles gambiae.
;CC   The GYPSY39-I_AG consensus was reconstructed after multiple
;CC   alignment of 4 copies.
;CC   The consensus encodes the 359-aa GYPSY39_AG1p gag-like
;CC   poliprotein (pos. 574-1650) and the 1168?aa GYPSY39_AG2p
;CC   pol-like poliprotein (pos. 1605-5108).
;CC   The sequence of the LTRs flanking GYPSY39-I_AG is deposited as
;CC   GYPSY39-LTR_AG.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           574..1650
;FT                 /product="GYPSY39_AG1p"
;FT                 /translation="MPKYTPFPKVRSLNFTKDKKIPVKMEQNIHALIESM
;FT                 RSLEERVNTLQAENDSLQRFQQQQQPTTSSRSADYFRIPDPIRVIPGFDG
;FT                 NKKQLIGWLTTVKKTLDLFKNNVAPEIFSVYEQTVINKIEGKARDTICVN
;FT                 GNPTTFDEVADILQNVYGDRNNIATYQTQLWNLKQNESLSLHYRKTKEIL
;FT                 INMKSVARQNTVYASHWEAINLFLEQECLAAFINGLSKTYFGYAQTAQPE
;FT                 DLESAYAFLCRFQNAERTKSNTNNGFEKHPSVDKNVKRDNKFSQPKHLEN
;FT                 RPFNNMKPSSDRTKIVPMDVDQSLRSNMRNKIFSHTAEEDDGKTISEESD
;FT                 SDEETDNEEDVNFQITANLNPPS"
;FT   CDS           1605..5108
;FT                 /product="GYPSY39_AG2p"
;FT                 /translation="RRCKFSNYCKLKPTELNAINGLPFYTTKLNGSNIKL
;FT                 LVDSGANKNFLNPELVPLTQRVKCETITIKNKNGKFKSQECTFITILDKK
;FT                 LKFYLFKCHNYFDGILGYESLSDMETLIDTKNHKLILPDRTIDLEIRTLE
;FT                 PPSITLNANNSQIIKLPVSQTKGNIFLPKDIQIKDAIIPSGVYKAKQGYA
;FT                 KVLARNYGDTLTFHWTKPAKTYELDKMIEINHMSTHPYNDHPQNYIANLE
;FT                 NLIRTDHLNKEEKHKLFEILKQNLGIIHQEKEKLSCTTAIRHRIKTKDDI
;FT                 PIHTKTYRYPNIHKAEVNRQIEEMIADGIIQHSISPWTSPIWIVPKKSDA
;FT                 SGKEKWRIVVDYRKLNEKTIDDRYPIPNIEEILDKLGRSMYFTTLDLKSG
;FT                 FHQIEVDKKDRPKTAFSTEKGHFEFIRMPFGLKNAPATFQRAMNNILGDL
;FT                 VGRNCLVYLDDIIIFGKSLQQHLDNLNKVLKKLIESNLKVQLDKCEFLRK
;FT                 ECEFLGHIVTQDGIKPNPNKIEKILHWPIPKTTTHIKGFLGILGYYRKFI
;FT                 KDFSKLTKPLTKCLKKGSKITHNDEFINCFNDCKQMLTTDPILKYPDFSR
;FT                 KFILETDASDFALGAVLSQKFEDGKEHPIAYASRTLNETECNYSATEKEL
;FT                 LAIVWATKHFRPYIFGTVFEIRTDHKPLVWLRQKNDLNRRLLHWKLALEE
;FT                 FEFEIKYKKGTLNGNADALSRITENPALTSELNANTASNNTDTMTQHSAD
;FT                 TNDDEFIPATEKPLNEFRNQIILEENNNDSREAITLFGNYHRITIKTPLF
;FT                 GPAMLINIIKEYASPKCVTGICCSEKILQNLQIIYKNYFSRAKSIKLFWT
;FT                 KTILEDVTDEIDQDLIIERQHNANHRGIIETKLHIARKYYFPNMKTKITK
;FT                 FINICKICQKAKYERRPYKQKYQITATPKKPLEIVHMDIFIISDKHFLTL
;FT                 CDKFSRLTMAIPLQSRNAIHILKALTQFFANVGRPCLLVMDQECSFKSTT
;FT                 IKQFLEENNVEFHYTSVGQSSSNGTIEIVHRTIRELHNIISLRDSTKNLS
;FT                 TTSKINLAVSIYNDSIHSQTNISPKELFFGFKNEDPIPEDLQERIKQKEE
;FT                 LYRVYATKQKEKKSKYIEKLNKTREEPELFKDNDTIFERKRNNLKHEERY
;FT                 RETKVFDNLVTNILDRNGRKIHKSKLKRKRKT"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 6337 BP; 2560 A; 1250 C; 970 G; 1557 T; 0 other;
GYPSY39-I_AG
1
;ID   GYPSY47-I_AG DNA   ; ANG   ; 6625 BP
;XX
;DE   GYPSY47-I_AG is an internal portion of retrotransposon
;DE   GYPSY47_AG - a consensus sequence.
;XX
;AC   .
;XX
;DT   16-APR-2004 (Rel. 9.03, Created)
;DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSD gag;
;KW   AP protease; GYPSY lineage; GYPSY47-I_AG; GYPSY47-LTR_AG;
;KW   Gypsy clade; RNase-H; reverse transcriptase;
;KW   integrase GYPSY47_AG.
;XX
;OS   Anopheles gambiae str. PEST
;XX
;OC   Anopheles gambiae str. PEST
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
;OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
;XX
;RN   [1]  (bases 1 to 6625)
;RA   Tubio,M.J., Costas,C.J. and Naveira,F.H.
;RT   GYPSY47_AG, a member of the Gypsy lineage of the Ty3/gypsy group
;RT   of LTR retrotransposons in Anopheles gambiae.
;RL   Repbase Reports 4(3), 86-86 (2004)
;XX
;CC   GYPSY47_AG is a family of gypsy-like LTR retrotransposons
;CC   that, according to the aminoacid sequence of its Reverse
;CC   Transcriptase,
;CC   RNase and Integrase is
;CC   phylogenetically grouped with representatives of the GYPSY
;CC   lineage of other organisms.
;CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG,
;CC   GYPSY44_AG,
;CC   GYPSY45_AG and GYPSY46_AG are other
;CC   members of this same lineage in Anopheles gambiae.
;CC   The GYPSY47-I_AG consensus was reconstructed after multiple
;CC   alignment of 6 copies.
;CC   The consensus encodes the 429-aa GYPSY47_AG1p gag-like
;CC   poliprotein (pos. 640-1926), the 1064?aa GYPSY47_AG2p
;CC   pol-like poliprotein (pos. 1866-5057) and the 503-aa
;CC   GYPSY47_AG3p
;CC   env-like poliprotein (pos. 5061-6569).
;CC   The sequence of the LTRs flanking GYPSY47-I_AG is deposited as
;CC   GYPSY47-LTR_AG.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           640..1926
;FT                 /product="GYPSY47_AG1p"
;FT                 /translation="MSQQEVVDRILSRLAALEAQQQSIPGVIDYSDPPLH
;FT                 FTKTDGTAVSPESFDKIPDLVKDLPVFSGEPSELNSWIDDVDGIVKLYQT
;FT                 NSTNTVEQQNRFHMVCKFIRRKIRGEANDSLVASNVGINWNLIKKTLITY
;FT                 YGEKRDLETLDFQIMSVQQKGRSLEVYYDEVNRLLSLIANQIHTDDRFSH
;FT                 PEASKALIETYNRKAIDSFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQ
;FT                 NIECRKMLTTPKSYIPPSAPRNLIPIVPRIPTKPNMYRPPTTPNHPNSPI
;FT                 YYRPPTYLTPQNRPNQNFYNPHLRIRPPVIPQRNPFKPPVAQNPPQPEPM
;FT                 EVDSSIRSKQVNYGNRPNFSGTYKPPLKRTRAFNIETNTGNEQVEYEEEM
;FT                 AKTLEECDDDVLSAHDRYLACINRQDGSETSENGEEAELNFLE"
;FT   CDS           5061..6569
;FT                 /product="GYPSY47_AG3p"
;FT                 /translation="QKNLLTFNIFSLFRLAICVSFTIVYANIGIHDITNN
;FT                 PLAVIPLGQARVKTGNIRIIHPIKIDHLEQVLINNDAELKHHVNDNPLYN
;FT                 IIKLKVNKLHETFNKIRPHTNRERRWDTIGTIWKWIAGTPDAEDLRVINS
;FT                 TINSLIEQNNQQVLINDEIDKRLYDITRIANSVLQLEEERFHQRSNEIIQ
;FT                 LIIISNLDTLQNYLETLEDAILLAKHGIPSSKLLSLDDLNQMVMFLAEHN
;FT                 IHVSSTEEMLIRSTAQVTMNKTHIIYMLKYPFESKHTFEYNYIDSIIKND
;FT                 KRILLHHNYILKNNTHVFESSQPCEQIDNGNYLCDSILLEPSSKCIQKLV
;FT                 HGYHSDCTYEKVYSDGIIKRIHDAVILINNATVRISSSCNNDTQFLTGSY
;FT                 IIHFEKCNIYINGEEFPNLEITIPNKAFQPTLGLIATETDVIDIPPSKYL
;FT                 NNLTIEHREILKKIKLENKSLSWKVNLFGSISGSIVFIVFIVIAVLINIY
;FT                 RYQSLRFILPSASRETT"
;FT   CDS           1866..5057
;FT                 /product="GYPSY47_AG2p"
;FT                 /translation="QTRWIRNIRKWRRSRIEFFRMSSTLPYFLYYGNAKE
;FT                 PLRILVDTGSNKNYIHPKYAKISHDLEKPFFISTVAGDVKITKYSQARLL
;FT                 KPYSDKMIKFFHLEQLKSFDAILGWDSLKENGSWINTVQDTLIVNGKYTI
;FT                 PLLLYKLQEVNQINIRDEHLQTQEKNDLRNMLHDFQDIFQPPDKKLPFTT
;FT                 KVKAEIRTIDQSPVYSKTYPYPQALKSEVHSQINKLLNDGIIRTSRSPYN
;FT                 SPVWIVPKKLDASNEKKYRLVIDYRKLNSKTISDRYPIPDTASVLANLGS
;FT                 NKYFTTLDLASGFHRIPMHERDIEKTAFSINNGKYEFVRMPFGLKNAPSI
;FT                 FQRVMDDTLREHIGKICYVYIDDIVVFGKTVEEHLKNLKTVLETLREANF
;FT                 KIQPDKSEFLKSEVEFLGFIISAEGLKPNMKKVECIRKYPEPKTLKDLRA
;FT                 FLGLSGYYRRFVKNYAELAKPLTKLLRGEDGHRQIPKNQSKNFTITLDES
;FT                 AKKSFQYLKEVLCSNDVLAFPDFEKPFILTTDASNIALGAVLSQQTSDGE
;FT                 RPITFISRTLSRTEENYATNEKEMLAVVWALQTLRNFIYGAKLKIFTDHL
;FT                 PLTFTLSPKNNNAKLKRWKSFLEEHDYELCYKPGKANIVADALSRVQINS
;FT                 LTPTQHSAEDDDNDYILSTEAPINVFRNQLIFRLTPNSSYELTIPFQGYK
;FT                 RHTFCESEFSSDFIKQTFKKFLNPKVRNGIYCDQSIMGNIQEIFKSMYNS
;FT                 KVIKIRYSQLKVEDLQTEEQQLEKIKEIHNFAHRNVKENSIQFIKKYYFP
;FT                 GMRKSIQNFIQNCEICKLEKYDRKPQKFIPIKTPIPTYPGEIVHIDIFAY
;FT                 NANNLFITSLDKFSKYLKIRPIKSKSIADIKDVLLQLLYDWNLPAEIVID
;FT                 NESSFVSNVVEQSILNLGVKIFKTPVNRSETNGQVERCHSTIREIARCIK
;FT                 SLNPDMSITCLVQQATYKYNNSIHSFIKDTPRNIYIGEFSNDHSFAERSK
;FT                 IREEKDRKIAQLFKEKEEKIVDQEYQTYEPGSIAYEKNKTNNKRESRYYP
;FT                 IKIKENHSTYIIDSNNRKVHKVNLRKTN"
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 6625 BP; 2624 A; 1216 C; 994 G; 1791 T; 0 other;
GYPSY47-I_AG
1
;ID   Gypsy-20-LTR_DR DNA   ; ZEB   ; 1446 BP
;XX
;DE   A long terminal repeat of the Gypsy-20_DR LTR retrotransposon -
;DE   a fossilized sequence.
;XX
;AC   chr12
;XX
;DT   11-FEB-2005 (Rel. 10.01, Created)
;DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   Gypsy superfamily; Gypsy-20-I_DR; Gypsy-20-LTR_DR; Gypsy-20_DR;
;KW   endogenous retrovirus.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 1446)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Gypsy-20_DR, a family of LTR retrotransposons from zebrafish.
;RL   Repbase Reports 5(1), 14-14 (2005)
;XX
;CC   Gypsy-20-LTR_DR is a long terminal repeat of the Gypsy-20_DR
;CC   LTR retrotransposon that belongs to the Gypsy superfamily. Its
;CC   internal portion is deposited in Repbase as Gypsy-20-I_DR.
;XX
;DR   Positions 34574763 34576208  Accession No         chr12 Zebrafish.
;XX
;SQ   Sequence 1446 BP; 426 A; 222 C; 269 G; 529 T; 0 other;
Gypsy-20-LTR_DR
1
;ID   HARBINGER1_DR DNA   ; ZEB   ; 4016 BP
;XX
;DE   Autonomous Harbinger-like DNA transposon.
;XX
;AC   AL591210
;XX
;DT   02-MAY-2002 (Rel. 7.04, Created)
;DT   02-MAY-2002 (Rel. 7.04, Last updated, Version 1)
;XX
;KW   Harbinger; DNA transposon; Interspersed Repeat;
;KW   DNA-binding protein; HARBINGER1_DR; HARBINGER2_DR;
;KW   Harbinger superfamily; TDR; transposase.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 4016)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HARBINGER1_DR, an autonomous Harbinger-like DNA transposon from
;RT   zebrafish.
;RL   Repbase Reports 2(4), 12-12 (2002)
;XX
;CC   HARBINGER1_DR is an autonomous Harbinger-like DNA transposon.
;CC   Given well preserved 16-bp TIRs, the TAA target site
;CC   duplication,
;CC   and encoded protein sequences, HARBINGER1_DR was active in the
;CC   zebrafish genome recently. The zebrafish genome harbors multiple
;CC   families of nonautonomous DNA transposons, for example
;CC   HARBINGERN1_DR, that are derivates of autonomous
;CC   HARBINGER1_DR-like
;CC   elements.
;CC   HARBINGER1_DR encodes two proteins, 424-aa HARBDR1p1 (2 exons,
;CC   positions 190-419 and 1084-2128) and 250-aa HARBDR1p2 (positions
;CC   4001-3249).
;CC   HARBDR1p1 is a Harbinger/IS5-like DNA transposase.
;CC   HARB1DRp1:
;CC   MESIALLSLWVFFLSRLLLSGAQPSHNITMSRSIVFVARKLSRNRAARIRKFARWQLKCS
;CC   EDFAALLSDYSSCTSIRTTWIRQRSDVWWQHVLTSWTDCEWKDNFRMGRAAFLQLCNRLQ
;CC   PHIQRQTTTFRKPVPVEQRVAICIWRLATNVEFRTISHLFGIGQSTAVSITNCVASAIVK
;CC   NLLSIFIRTPSEQEFESIIQGFRDKWGFPQCGGAIDGTHIGILAPPVSSADYYNRKGFYS
;CC   VILQGVVDHRLMFWDINVGWPGKVHDARVFANSSLFDRGQGNSLFPPNIERFGDVDVPVM
;CC   LLGDAAYPLMPWLMKPYPENQLTTPAQSTFNNRLSKARMTVERAFGPLKGRWRCLMKRCD
;CC   CHIDNINSIISACCVLHNYCQLYGEDCDEIATDDENVNSDWNSCHSATRSNATRDALCSY
;CC   FSNL
;CC   HARB1DRp2 is a DNA-binding protein with the trihelix motif.
;CC   It is related to multiple DNA binding proteins and transcription
;CC   factors identified in plants (GT-1 proteins), insects (GenBank,
;CC   g7294624) and mammals (GenBank, g12844693). Presumably,
;CC   HARB1DRp2
;CC   is a former host gene captured by Harbinger in the past.
;CC   HARB1DRp2:
;CC   MPSVPCPGPFPGSFEKCECAESGPSTVHLAGPGPVGRGVPERGSLGLWRGTLVVRVQACQ
;CC   SPKLKTLRHLLRHFKTGKNHVTSLSATLLTPKSNRKRTSDAFSATIPKTTVAWKGSLWST
;CC   DEVQCLLDVWADESIQEQLDKTHKNSEIFRKIKDHLLGRGYQRTTEQCRDKMKKLRAQYL
;CC   KVRDALRRSGSKPEEKDKFKWYDAVDNIIGSKPSSQPNVLESHSQSMGDSTPSTPSETED
;CC   TGSERSQRGE.
;XX
;DR   Positions   80099   84115  Accession No      AL591210 Genbank
;XX
;SQ   Sequence 4016 BP; 1195 A; 786 C; 817 G; 1218 T; 0 other;
HARBINGER1_DR
1
;ID   HATN11_DR   DNA   ; ZEB   ; 927 BP
;XX
;DE   HATN11_DR is a nonautonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   11-JUL-2002 (Rel. 7.06, Created)
;DT   11-JUL-2002 (Rel. 7.06, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   Dr000287; HATN11_DR; nonautonomous DNA transposon;
;KW   hAT superfamily.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]
;RA   Bao,Z.
;RT   Dr000287, an unclassified and uncharacterized repeat.
;RL   http://www.genetics.wustl.edu/fish_lab/repeats/
;XX
;RN   [2]  (bases 1 to 927)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HATN11_DR, a nonautonomous hAT-like DNA transposon from
;RT   zebrafish.
;RL   Repbase Reports 2(6), 10-10 (2002)
;XX
;CC   HATN11_DR is a family of nonautonomous DNA transposons that
;CC   belongs
;CC   to the hAT superfamily [2].
;CC   Several hundred copies of HATN11_DR are expected to populate the
;CC   zebrafish genome. The element was active relatively recently,
;CC   its
;CC   copies are ~3% divergent from the consensus sequence.
;CC   This element is characterized by 8-bp target site duplications
;CC   and
;CC   imperfect 11-bp terminal inverted repeats (one mismatch).
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 927 BP; 224 A; 310 C; 208 G; 185 T; 0 other;
HATN11_DR
1
;ID   HATN17_DR   DNA   ; ZEB   ; 1547 BP
;XX
;DE   DNA transposon HATN17_DR.
;XX
;AC   .
;XX
;DT   22-OCT-2004 (Rel. 9.09, Created)
;DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; 8-bp TSD; HATN17_DR;
;KW   hAT-type.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]
;RA   Schulte-Merker,S., van Eeden,J.F., Halpern,E.M., Kimmel,B.C.
;RA   and Nusslein-Volhard,C.
;RT   no tail (ntl) is the zebrafish homologue of the mouse T
;RT   (Brachyury) gene.
;RL   Development 120(4), 1009-1015 (1994)
;XX
;RN   [2]
;RA   Hammond,S.
;RT   HATN17_DR.
;RL   Direct Submission to Repbase Update (23-JUL-2003)Wellcome Trust
;RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail
;RL   enquiries: zfish-help@sanger.ac.uk Clone requests:
;RL   clonerequest@sanger.ac.uk
;XX
;RN   [3]
;RA   Gentles,A., Kohany,O. and Jurka,J.
;RT   DNA transposon HATN17_DR - a consensus.
;RL   Direct Submission to Repbase Update (MAY-2004)
;XX
;CC   HATN17_DR is a hAT-like non-autonomous DNA transposon from
;CC   zebrafish. There are around 70 copies of HATN17_DR in the
;CC   genome, with >96% similarity to the consensus. This transposon
;CC   contains a partial DANA SINE element, and shows similarity to
;CC   Dr00017, Dr000745, HE1_DR1, DANA, Dr000132, and TDR9. There is
;CC   an 8-bp target-site duplication.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1547 BP; 496 A; 281 C; 291 G; 479 T; 0 other;
HATN17_DR
1
;ID   HE1_DR1     DNA   ; ZEB   ; 402 BP
;XX
;DE   Zebrafish HE1 SINE element - a consensus.
;XX
;AC   .
;XX
;DT   01-APR-2002 (Rel. 7.03, Created)
;DT   01-APR-2002 (Rel. 7.03, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; DANA; HE1_DR1; HE1_MM; HE1_SINE.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]
;RA   Ogiwara,I., Miya,M., Ohshima,K. and Okada,N.
;RT   Retropositional parasitism of SINEs on LINEs: identification of
;RT   SINEs and LINEs in elasmobranchs.
;RL   Mol. Biol. Evol 16(9), 1238-1250 (1999)
;XX
;RN   [2]  (bases 1 to 402)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   HE1_DR1: HE1 SINE element from zebrafish.
;RL   Repbase Reports 2(3), 4-4 (2002)
;XX
;CC   Similar to Mustelus manazo SINE elements: HE1_SINE and HE1_MM
;CC   reported by [1]. However, this is the first report of HE1 SINE
;CC   elements in zebrafish. HE1 SINEs are similar to MER6 DNA
;CC   transposons from the human genome.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 402 BP; 89 A; 76 C; 119 G; 114 T; 4 other;
HE1_DR1
1
;ID   HELITRON8_OS DNA   ; ORY   ; 8831 BP
;XX
;DE   Helitron-type DNA transposon from O. sativa (autonomous).
;XX
;AC   AP006456
;XX
;DT   11-SEP-2005 (Rel. 10.09, Created)
;DT   11-SEP-2005 (Rel. 10.09, Last updated, Version 1)
;XX
;KW   Helitron; DNA transposon; Interspersed Repeat.
;XX
;OS   Oryza sativa (japonica cultivar-group)
;XX
;OC   Oryza sativa (japonica cultivar-group)
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
;XX
;RN   [1]  (bases 1 to 8831)
;RA   Jurka,J.
;RT   HELITRON8_OS: Helitron-type autonomous rolling circle transposon
;RT   from rice.
;RL   Repbase Reports 5(9), 260-260 (2005)
;XX
;CC   The closest copy is >99% identical. There appear to be two ORFs.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           2336..3751
;FT                 /product="HELITRON8_OS_1p"
;FT                 /translation="MFWYQERVKSASAISKRKIIYNLCCKGGRIQLPKLR
;FT                 APPEPLASLLNYNGDARSKNFLRQIRSYNSMFAFSSMGAAIDKSINTGNA
;FT                 PYVFKINGVVHHRIGTLVPSCGSPPKFAQLYVYDPENELQNRLNIFENDG
;FT                 DNSDKADPEIIRALSSMLDAENTLVQSFRYARERVIQHGNQQVTLRLLGC
;FT                 NAKDDVQYNLPTNSEIAAIIVGDFSAKEYKFDVLVYDKGRGLCQISPLHP
;FT                 SYMALQYPLLFPYGERGFHLGIKYSNYDGIGKKYVTMPEYYRYEMHYRLN
;FT                 EPNPFTCYGRLSDQIDVDIFSTIETNRLQYFIDHQKELRSESVDGIVDAI
;FT                 DKGVTDGDSVGKRVILPASFTGGRRYMVMNYQDAMAICRVYGPPDLFVTY
;FT                 TCHSKWQEIADAIRFEPGQQPSDRADIIVRVFNMKVNEFITDIREGRTFG
;FT                 KVLAGMVTILLVYSVLRPLVWHSSTFVLNDYSVVHC"
;FT   CDS           3729..6758
;FT                 /product="HELITRON8_OS_2p"
;FT                 /translation="MITVLYTVEFQKRGLPHIHCLVWLAAATADVSASII
;FT                 DGFICAEIPDYDTDRLGYELVSEFMMHGPCSDANKKCPCMKNDKCSKHYP
;FT                 KDFQDETIVDESGFTIYRRRNDGRSIMKNGILLDNRSVVPYNMALLKKYE
;FT                 AHINVEWCNKSNLIKYLFKYITKGHDRARIYFETTGKTQNASPNHDLAPR
;FT                 NEILEYMDARFLSTYEALHRLFEFDIHYRVPPVERLVVHLPGKNFVRYEK
;FT                 GADLRAVLESPGAKRSMLTEWFETNKKNSKAHSLTYCEFPKEWTWEPSSK
;FT                 TWHERTPAPKIGRIYYVHPTAGELYYLRMLLMIVKGAQSYADVRTYDGVV
;FT                 YGTYREACEARGLLEGDNEWHLLFDEAIVTASSAQLRQLFVTVLLYCSVG
;FT                 DVRSLFDKYWLYMTDDIHNRLKKALDNPHCVIPHDHLLNMLLHELIAVFA
;FT                 NSGGNIKDFNLPHPSSVPHVLGTNRLIDEEITIDPLMLAMHADSFVQQLN
;FT                 NDQITVFSTICSRAIANEPGFFFVSGHGGTGKTFLWNTIIAKLRSQNKIV
;FT                 LAVASSGVASLLLPRGRTAHSRFKIPIDIDETSICNIKRGTMLAELLAET
;FT                 ALIIWDEAPMTHRRCFEALDRTLRDILSETCPSNSIVPFGGKPIVLGGDF
;FT                 KQILPVIPKGSRQAIINASITNSELWKHVALLSLNINMRLLNPMLPDNQK
;FT                 KELHDFSQWVLAIGNGTLPMTAKEGENYPAWITIPDDLLVMTSGDKIAAI
;FT                 VHEVYSDFLTCYRDIEYLASRAIVCPTNTTVDEINDYIIGLVPGDSRVYL
;FT                 SCDTISKSSEQIPDFDLLYPPEFLNSINATNFPTHKLVLKEGVVVMLLRN
;FT                 LNQSIGLCNGTRLLVTVLGDRILQCIILTGSNIGETVYIPRITLGTTKMK
;FT                 WPFTLQRRQFPVRVCYSMTINKSQGQTLQRVGVYLRKPVFTHGQLYVAIS
;FT                 RVTSRSGLKILIENDDGSCGTQTKNIVYSEVLSATVQAVISRTLYLFFLL
;FT                 FITSLYFQQSNVHVLLLQAPPLDA"
;XX
;DR   Positions   56840   48010  Accession No      AP006456 EMBL/GenBank/DDBJ
;XX
;SQ   Sequence 8831 BP; 2263 A; 1819 C; 1899 G; 2850 T; 0 other;
HELITRON8_OS
1
;ID   HELITRONY1A DNA   ; ATH   ; 1348 BP
;XX
;DE   HELITRONY1A is a non-autonomous DNA transposon, a consensus
;DE   sequence.
;XX
;AC   .
;XX
;DT   19-JAN-2001 (Rel. 6, Created)
;DT   24-MAY-2001 (Rel. 6.04, Last updated, Version 2)
;XX
;KW   Helitron; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   ATREP5; HELITRON class; HELITRON1; HELITRONY1A;
;KW   non-autonomous DNA transposon.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 1348)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HELITRONY1A.
;RL   Direct Submission to Repbase Update (JAN-2001)
;XX
;RN   [2]  (bases 1 to 1348)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (MAY-2001)
;XX
;RN   [3]
;RA   Kapitonov,V.V. and Jurka,J.
;RT   Rolling-circle transposons in eukaryotes.
;RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001)
;XX
;CC   HELITRONY1A is a non-autonomous DNA transposon.
;CC   There are several copies of HELITRONY1A in the genome; they are
;CC   ~94% identical to the consensus sequence.
;CC   HELITRONY1A transposes precisely in the AT target sites, without
;CC   duplication of the host DNA.
;CC   There is 76% identity between HELITRONY1A and ATREP5 over their
;CC   complete lengths (several long indels); they share ~90%
;CC   identical
;CC   30-bp 5' and 3' termini.
;CC   There is 70% nucleotide identity between ~160-bp 5'-terminal
;CC   portions of HELITRONY1A and HELITRON1; their 20-bp 5' termini
;CC   are identical); their ~150-bp 3'-termini are 70% identical
;CC   with each other.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 1348 BP; 560 A; 164 C; 129 G; 495 T; 0 other;
HELITRONY1A
1
;ID   HERV15I     DNA   ; HUM   ; 8735 BP
;XX
;DE   Internal sequence of endogenous retrovirus flanked by LTR15 - a
;DE   consensus sequence.
;XX
;AC   .
;XX
;DT   01-FEB-1999 (Rel. 4.01, Created)
;DT   01-FEB-1999 (Rel. 4.01, Last updated, Version 1)
;XX
;KW   Endogenous Retrovirus; Interspersed Repeat;
;KW   Endogenous retrovirus HERV15; HERV15I; HERV15I.; HERV3; HERVE;
;KW   HSRIRT; LTR15; MMLV; RRHERV-I; an internal portion; env; gag;
;KW   pol.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 222)
;RA   Kannan,P., Buettner,R., Pratt,R.D. and Tainsky,A.M.
;RT   Identification of a retinoic acid-inducible endogenous
;RT   retroviral transcript in the human teratocarcinoma-derived cell
;RT   line PA-1.
;RL   J.Virol 65(11), 6343-6348 (1991)
;XX
;RN   [2]  (bases 1 to 8735)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HERV15I.
;RL   Direct Submission to Repbase Update (JAN-1999)
;XX
;CC   LTR's flanking HERV15I are listed in REPBASE as LTR15 sequences.
;CC   Bp 1-18 constitute primer binding site of Ile-tRNA [1].
;CC   The consensus sequence has been reconstructed based on several
;CC   individual copies of HERV15I [2]. Gag, pol and env polyproteins
;CC   encoded by HERV15 retrovirus are related to MMLV and ALV-like
;CC   viruses. Its human relatives include HERV3 and HERVE
;CC   retroviruses.
;CC   There is ~5% divergency between HERV15I individual copies and
;CC   its
;CC   consensus sequence.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 8735 BP; 2589 A; 1937 C; 2202 G; 2004 T; 3 other;
HERV15I
1
;ID   HERV30I     DNA   ; HUM   ; 8257 BP
;XX
;DE   Internal sequence of primate endogenous retrovirus HERV30 - a
;DE   consensus.
;XX
;AC   .
;XX
;DT   29-AUG-2000 (Rel. 5.07, Created)
;DT   29-AUG-2000 (Rel. 5.07, Last updated, Version 1)
;XX
;KW   Endogenous Retrovirus; Interspersed Repeat;
;KW   Endogenous retrovirus class I; HERV30; HERV30I; LTR30.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 785)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HERV30I.
;RL   Direct Submission to Repbase Update (21-NOV-1997)
;XX
;RN   [2]  (bases 1 to 8257)
;RA   Smit,A.F.
;RT   HERV30I.
;RL   Direct Submission to Repbase Update (02-AUG-2000)
;XX
;CC   Consensus sequence of an endogenous retrovirus with LTR30 LTRs,
;CC   with ORFs for gag (1367-2445) and pol (2827-6400). The latter is
;CC   not yet open in the current consensus.
;CC   HERV30I is 81% identical to HERV9 over nucleotides 1397 to 6509.
;CC   Average divergence from consensus 8.5 %.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 8257 BP; 2408 A; 2127 C; 1698 G; 1919 T; 105 other;
HERV30I
1
;ID   HERV35I     DNA   ; HUM   ; 6918 BP
;XX
;DE   HERV35I is an internal portion of the HERV35 endogenous
;DE   retrovirus - a consensus.
;XX
;AC   .
;XX
;DT   11-SEP-2003 (Rel. 8.08, Created)
;DT   11-SEP-2003 (Rel. 8.08, Last updated, Version 1)
;XX
;KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; Non-autonomous;
;KW   HERV35I; LTR35; MER4I-group; nonautonomous LTR retrotransposon;
;KW   Class I; Internal sequence of endogenous retrovirus; tRNA Pro.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 6918)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HERV35I.
;RL   Direct Submission to Repbase Update (AUG-2003)
;XX
;CC   Internal sequence of an endogenous retrovirus with LTR35 LTRs.
;CC   This is an ancient class I nonautonomous LTR retrotransposon.
;CC   Copies are on average 15% divergent from the consensus sequence.
;CC   There are 20 copies of the internal sequence present
;CC   in the genome. The primer binding site is complementary to
;CC   the proline tRNA. One recombinant form of HERV35 is detected
;CC   in chromosome 18. It shares with HERV35 the same LTRs and
;CC   ~400 and 240-bp 5' and 3' ends of the internal portions.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 6918 BP; 1926 A; 1300 C; 1400 G; 2292 T; 0 other;
HERV35I
1
;ID   HERVIP10FH  DNA   ; HUM   ; 5102 BP
;XX
;DE   Internal portion of HERVIP10FH, an endogenous retrovirus flanked
;DE   by LTR10F - a consensus sequence.
;XX
;AC   .
;XX
;DT   28-MAR-2001 (Rel. 6.02, Created)
;DT   28-MAR-2001 (Rel. 6.02, Last updated, Version 1)
;XX
;KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; Non-autonomous;
;KW   C type; HERVIP10F; HERVIP10FH; LTR10F;
;KW   Non-autonomous endogenous retrovirus; env; tRNA Ile/Pro.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 5102)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   HERVIP10FH.
;RL   Direct Submission to Repbase Update (MAR-2001)
;XX
;CC   HERVIP10FH is an internal portion of the HERVIP10FH
;CC   non-autonomous endogenous retrovirus.
;CC   Average similarity between HERVIP10FH copies and the consensus
;CC   sequence
;CC   is 95%. Proviral copies and solo-LTRs are flanked by 4-bp target
;CC   site duplications. LTR is deposited in Repbase Update as LTR10F.
;CC   HERVIP10FH has been multiplied ~30 Myr ago. The consensus
;CC   sequence
;CC   was reconstructed based on multiple alignment of 5 copies.
;CC   Overall,
;CC   there are about 10 copies of the HERVIP10FH internal sequence
;CC   present in the human genome.
;CC   Main portion of HERVIP10FH (position 757-4550) is 95% identical
;CC   to the HARLEQUIN retrovirus (position 842-4155).
;CC   Terminal portions of HERVIP10FH (positions 1-278 and 2724-5102)
;CC   are 95% identical with corresponding portions of HERVIP10F.
;CC   HERVIP10FH has encoded the env protein only. Presumably,
;CC   intragenomic proliferation of HERVIP1OFH was a result of
;CC   its interactions with the autonomous HERVIP1F retrovirus.
;CC   HERVIP10FH has not coded for the functional gag and pol
;CC   proteins.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 5102 BP; 1671 A; 1038 C; 1149 G; 1244 T; 0 other;
HERVIP10FH
1
;ID   HERVS71     DNA   ; ROD   ; 8978 BP
;XX
;DE   Internal sequence of endogenous retrovirus HERVS71.
;XX
;AC   .
;XX
;DT   27-JAN-1997 (Rel. 2, Created)
;DT   16-JUN-2000 (Rel. 5.05, Last updated, Version 4)
;XX
;KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
;KW   Endogenous retrovirus S71; HERVHC2; HERVS71;
;KW   simian sarcoma virus.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]
;RA   Werner,T., Brack-Werner,R., Leib-Moesch,C., Backhaus,H., Erfle,V.
;RA   and Hehlmann,R.
;RT   S71 is a phylogenetically distinct human endogenous retroviral
;RT   element with structural and sequence homology to simian sarcoma
;RT   virus (SSV).
;RL   Virology 174, 225-238 (1990)
;XX
;RN   [2]  (bases 1247 to 6913)
;RA   Kabat,P., Tristem,M., Opavsky,R. and Pastorek,J.
;RT   Human endogenous retrovirus HC2 is a new member of the S71
;RT   retroviral subgroup with a full-length pol gene.
;RL   Virology 226, 83-94 (1996)
;XX
;RN   [3]  (bases 1247 to 7479)
;RA   Blusch,H.J., Haltmeier,M., Frech,K., Sander,I., Leib-Mosch,C.,
;RA   Brack-Werner,R. and Werner,T.
;RT   Identification of endogenous retroviral sequences based on
;RT   modular organization: proviral structure at the SSAV1 locus.
;RL   Genomics 43(1), 52-61 (1997)
;XX
;RN   [4]  (bases 1 to 8978)
;RA   Smit,A.F.
;RT   HERVS71.
;RL   Direct Submission to Repbase Update (FEB-2000)
;XX
;CC   LTR's of HERVS71 are listed in REPBASE as LTR6A and LTR6B
;CC   sequences.
;CC   LTR6 (Z70664; position 5492-6069) reported by [1,2] is in fact
;CC   an env-related portion of HERVS71 [3].
;XX
;DR   [4] (Consensus)
;XX
;SQ   Sequence 8978 BP; 2249 A; 2395 C; 2007 G; 2231 T; 96 other;
HERVS71
1
;ID   HRES1       DNA   ; HUM   ; 1158 BP
;XX
;DE   Human HTLV-I related endogenous retroviral sequence HRES-1;
;DE   internal fragment.
;XX
;AC   X16660
;XX
;DT   11-NOV-1996 (Rel. 1.1, Created)
;DT   27-JAN-1997 (Rel. 2, Last updated, Version 2)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; endogenous retrovirus;
;KW   HRES1; LTR11.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 1158)
;RA   Perl,A.
;RT   HRES1.
;RL   Direct Submission to Genbank (23-AUG-1989)Perl A., Roswell Park
;RL   Memorial Institute,
;XX
;RN   [2]  (bases 1 to 1158)
;RA   Perl,A., Rosenblatt,D.J., Chen,S.I., DiVincenzo,P.J., Bever,R.,
;RA   Poiesz,J.B. and Abraham,N.G.
;RT   Detection and cloning of new HTLV-related endogenous sequences
;RT   in man.
;RL   Nucleic Acids Res 17(17), 6841-6854 (1989)
;XX
;CC   LTRs of HRES-1 are separately listed in REPBASE as LTR11.
;CC   misc_feature 4..21
;CC   /note="tRNA primer binding site"
;CC   CDS 151..822
;CC   /note="open reading frame p25 (AA 1-223)"
;CC   CDS 390..806
;CC   /note="open reading frame p15 (AA 1-138)"
;CC   /codon_start=1
;CC   HRES-1 is related to the T-cell leukemia virus (HTLV-1).
;CC   Of the deduced amino acid sequence of HRES-1/1 p25, residues
;CC   6-36 show
;CC   32% and 39% homology to the gag region segments of HTLV-I and
;CC   HTLV-II,
;CC   while residues 104-139 display a sequence homology of 33% and
;CC   28% to
;CC   the gag regions of human immunodeficiency virus type 2 (HIV-2)
;CC   and
;CC   feline sarcoma virus (FSV), respectively. This suggests that the
;CC   original exogenous virus infecting primates could be chimeric in
;CC   structure. The HRES-1 genomic locus is transcriptionally active
;CC   in
;CC   lymphoid cells, melanoma cells, and embryonic tissues.
;XX
;DR   Positions     994    2151  Accession No        X16660 GenBank
;XX
;SQ   Sequence 1158 BP; 203 A; 382 C; 411 G; 162 T; 0 other;
HRES1
1
;ID   ISFUN1      DNA   ; DRO   ; 928 BP
;XX
;DE   Drosophila funebris insertion sequence Isfun-1.
;XX
;AC   AJ309320
;XX
;DT   13-SEP-2004 (Rel. 9.08, Created)
;DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
;XX
;KW   ISFUN1; direct repeat; Dispersed repeat; insertion sequence;
;KW   Inverted repeat.
;XX
;OS   Drosophila funebris
;XX
;OC   Drosophila funebris
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]
;RA   Amador,A. and Juan,E.
;RT   Nonfixed duplication containing the Adh gene and a truncated
;RT   form of the Adhr gene in the Drosophila funebris species group:
;RT   different modes of evolution of Adh relative to Adhr in
;RT   Drosophila.
;RL   Mol. Biol. Evol 16(11), 1439-1456 (1999)
;XX
;DR   Positions       1     928  Accession No      AJ309320 Genbank
;XX
;SQ   Sequence 928 BP; 276 A; 181 C; 175 G; 296 T; 0 other;
ISFUN1
1
;ID   L1-10_DR    DNA   ; ZEB   ; 5708 BP
;XX
;DE   L1-10_DR is a non-LTR retrotransposon from the L1 clade.
;XX
;AC   AL772154
;XX
;DT   11-FEB-2003 (Rel. 8.01, Created)
;DT   11-FEB-2003 (Rel. 8.01, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; 15-bp TSD;
;KW   L1 clade; L1-10_DR; endonuclease; reverse transcriptase.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 5708)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1-10_DR, a family of non-LTR L1-like retrotransposons from
;RT   zebrafish.
;RL   Repbase Reports 3(1), 4-4 (2003)
;XX
;CC   L1-10_DR forms a separate family of L1-like non-LTR
;CC   retrotransposons.
;CC   This element is less than 70% identical to members of other
;CC   L1-like
;CC   families identified in the zebrafish genome.
;CC   This family was active recently (no stop codons in ORF2).
;CC   L1-10_DR encodes two L1-like proteins: 281-aa L1-10_DR1p
;CC   (positions
;CC   136-978) and the 1260-aa L1-10_DR2p (positions 1588-5367).
;CC   L1-10_DR1p is a putative RNA/DNA binding protein, and L1-10_DR2p
;CC   is
;CC   composed of the AP endonuclease and reverse transcriptase
;CC   domains.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           1588..5367
;FT                 /product="L1-10_DR2p"
;FT                 /translation="MINNSEIKIGSWNVRGLNNLVKLKQVLGRLKQMKAN
;FT                 IIFLQETHLLKDDVSRVTKRWPGQVFNASFTSRARGVMILIHKSIPFQLK
;FT                 QQYIDPLGRYIILNGTILTSHINLISIYAPNVDDPSFFQNFFFTISAYAG
;FT                 NYVIGGDFNCVLNPINDRSSGVDTHQQSKKTILKYMTDLNLVEIWRYLNP
;FT                 NKKEYSCFSNTYKTFSRIDYFLISNGLVTKVGKSWYDSILLSDHAPVLFT
;FT                 IQFDNLVLPPPRFRFQASWLLDHDFVKFLDNKIDLYFLVNTNQTSASVKW
;FT                 EAFKAYIRGEILSYTRYRSKIYQAQLEDLGKQIKVIERHLFSNFDPSKQK
;FT                 ELLVLKAKYNEITSSKISKNLMWLKQSYYDQGEKSGKLLAWRIKKIQTDR
;FT                 AINSIFLENGEKTVDPLEINNIFKLYYENLYKSEIANNLEGQNNFLDKIT
;FT                 FPKLSEETRSNLEKNLSIEELSEALQDMCNGKAPGPDGLPMEIYKTFAGK
;FT                 ILPHLLEMFNESLGKGILPPSLRSALITLILKPGKPPNEKSSYRPISLMS
;FT                 CDTKILCKALSKRIEKFIPNLIMNDQNGFVLGRQAFHNIRRVLNIVFKKQ
;FT                 KAKDHAILSLDAEKAFDRIEWRYLFEVLERFGLGDGYIRWIKLLYNDPQA
;FT                 EIITNNQISKPFNLSRGTRQGCPLSPLLLLFAIEPLAMAIRSSPEIKGII
;FT                 IGEREHRLSLFADDIVVFLSSLELSIQALNALLKVFGEFSGYKVNNNKSA
;FT                 LLLLNKDEQRNYTNNRQFFNSQEELTYLGIKIVTNIKEIISINYDPLLKK
;FT                 VMDSLERWNAMPISMIGRINIIKMSILPKFLYLFQSIPLPLPATFFVTLK
;FT                 KMFTRFIWNNKRPRLRLSLLYLPYERGGLKLPNIKLYYWAAQLCSAMYYF
;FT                 IETDPPAWIDIEKNEITTPLQMYLYSSPVKVLKKYTNNPFLRNSICVWYE
;FT                 AHDFLGETIKLSSLSPIWGNAMFVPGRNDGGFKNWMYKGAKQVKDLYKDG
;FT                 TMMSFQQLMKEYDIPQKHFFKYLQIRSFIHSEIKTYVEPSLSTIEEHTVK
;FT                 HLRDKGNLSFFYNTLLEGSKESSMSYLTAWRNDLQEDISKDEWMDSCLFA
;FT                 QTYSVNTRCRLLQYKWLMRTYITPVKLHKFNPNIPDSCLKCKQDIGTLYH
;FT                 CMWECTEIQTFWKSILVMIGKLTEENVPCDPKLCLFHIYPVNFVVSASKR
;FT                 KLIDFSLLQAKRAIALKWKEMQGPSSILWIKEMTNNLAMEKLTYAVKGKL
;FT                 KDFYNIWTPFLCYCNQEDLTGMDD"
;FT   CDS           136..978
;FT                 /product="L1-10_DR1p"
;FT                 /translation="MPPKTIKLPQHSKPSGQMEEEGKVLASKKLTEPQSE
;FT                 DNAATNDDILRAVQSFRDDCSKQFTDTMEAINGIKTDLLSQAQRIGAAEE
;FT                 RISQAEEDVTALQHKVNKLEETTEFLRNKVQDLEDRGRRSNLRLIGLPEK
;FT                 TEGSNMCTFIENFFPTILRDEFGSPPAIERAHRVGQVNPNRPSAPRAIVI
;FT                 KFLNYQDKEKALRAARKMKELRYEGQRISLFQDLSAETRQRQRQFDGVKA
;FT                 QLRGMEIRYGMLYPAHLIVTHVGQRHVFKTVAEAEDFVRSVRTNI"
;XX
;DR   Positions   89080   94787  Accession No      AL772154 Genbank
;XX
;SQ   Sequence 5708 BP; 1912 A; 972 C; 1100 G; 1724 T; 0 other;
L1-10_DR
1
;ID   L1-3_CR     DNA   ; CHL   ; 1991 BP
;XX
;DE   L1-3_CR is a 3' terminal portion of a putative L1-like non-LTR
;DE   retrotransposon - a consensus.
;XX
;AC   .
;XX
;DT   04-MAR-2004 (Rel. 9.02, Created)
;DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-3_CR;
;KW   putative L1 superfamily.
;XX
;OS   Chlamydomonas reinhardtii
;XX
;OC   Chlamydomonas reinhardtii
;OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
;OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
;XX
;RN   [1]  (bases 1 to 1865)
;RA   Day,A. and Rochaix,D.J.
;RT   Characterization of transcribed dispersed repetitive DNAs in the
;RT   nuclear genome of the green alga Chlamydomonas reinhardtii.
;RL   Curr. Genet 16(3), 165-176 (1989)
;XX
;RN   [2]  (bases 1 to 1991)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1-3_CR, a family of L1-like non-LTR retrotransposons from the
;RT   green algae genome.
;RL   Repbase Reports 4(2), 41-41 (2004)
;XX
;CC   The L1-3_CR elements are flanked by ~15-bp target site
;CC   duplications.
;CC   There are several hundred copies of L1-3_CR present in the
;CC   genome.
;CC   They are massively truncated at 5'. Therefore, the consensus is
;CC   not complete at its 5' end. Some copies are identical.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 1991 BP; 220 A; 763 C; 570 G; 406 T; 32 other;
L1-3_CR
1
;ID   L1-3_DR     DNA   ; ZEB   ; 5520 BP
;XX
;DE   L1-3_DR is a non-LTR retrotransposon from the L1 clade.
;XX
;AC   AL807749
;XX
;DT   04-AUG-2002 (Rel. 7.07, Created)
;DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 clade;
;KW   L1-3_DR; endonuclease; reverse transcriptase.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 5520)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1-3_DR, a family of non-LTR L1-like retrotransposons from
;RT   zebrafish.
;RL   Repbase Reports 2(7), 23-23 (2002)
;XX
;CC   L1-3_DR is a family of L1-like non-LTR retrotransposon. This
;CC   family was active recently (no stop codons in protein sequences
;CC   encoded by the genomic element).
;CC   It can be an active element. It encodes two proteins:
;CC   449-aa L1-3_DR1p (positions 214-1560) and 1279-aa L1-3_DR2p
;CC   (positions
;CC   1565-5401). These proteins are most close to corresponding
;CC   proteins
;CC   encoded by other L1-like elements. L1-3_DR1p is a putative
;CC   RNA/DNA
;CC   binding protein, and L1-3_DR2p is composed of the AP
;CC   endonuclease
;CC   (aa positions 1-200) and reverse transcriptase domains.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           214..1560
;FT                 /product="L1-3_DR1p"
;FT                 /translation="MDSQSNSTDLFDEAHGENITGRSGERQKENSTGLRG
;FT                 ERQLENNTGQEGERNMVNKERQENQQQEMQQQRSGKKYMKEATVILNVDK
;FT                 VKEVRVLEIINAVTEKCGLGKILAIRPRQDKDYELTLENEETCDKLMDGL
;FT                 IIKGETCEVKMLQNRDYVVSFMHLPAYLDDQLILDKLEGWGVFPITKIKR
;FT                 RVYPGTEIEDGTRYLKVRFPREVISLPYSTRLETAEGQQYFRVMHSHQVK
;FT                 TCRLCMSPDHMVKDCPDFKCHKCEERGHFARDCDAIKCPDCQNYLSKCEC
;FT                 WMEEEEEEDEIQVSGQMHEGNSEKESNEEEQTTTQTIQTTTEEITLKEEN
;FT                 AKKEKEKETETDSQQIEHEEEVAWTPMDITSSFKNVLDVIEKEDLKEQSK
;FT                 GTDRETGKHEEEVEKDKLEKRQTRRSAKVLSKLETARKKGLKKGQLKSHN
;FT                 RYDSLRGLGEEED"
;FT   CDS           1565..5401
;FT                 /product="L1-3_DR2p"
;FT                 /translation="MTVFISFFLLLMVLNCVSFNARGLMDLRKFKNVKEK
;FT                 CKREEIIILQETNWKNEVMDIYKKEWDGDFYYSNGDTKAGRGVAILIKKN
;FT                 ALQMSKVIYKDKQGKCMILEIKYEGKDIILVNVHAPNEESEKKSFFNILR
;FT                 RFLKNYKQIIVCGDFNTVFSRQDITEGMVFKSDTGRKELKSLIEEKGMID
;FT                 IWRERNGKKKEFSRRQIVGNFVNQSRIDYVLCTRNIEIYIEKIRYDETVL
;FT                 SDHKFVFFNFNTEEIQRGPGVWTLNSEILKNEDYVKKVKEIIEKEKGNQI
;FT                 YNEDKRLWWENVKFLIKKSTLTFCRIIQKNKRHKEKTIKENLEIELDKNE
;FT                 KDIQKIKEMEGKLKEIEEKKYEGARLRSKAKYVVEGEKCTKFFFDLERQK
;FT                 AKAETIKIIQGAKGESIEGNEEILKEIKKYYEELFKTQGVDEVQMSKLLK
;FT                 QIKTKIDEEDKKECDQEIGEEEIRKAIESLNKKKSPGIDGLNSEFYVCFK
;FT                 EILIPILTDVFKEILQKEELNERMGMGLMKLIHKKGEKTLLKNYRPITML
;FT                 NTDLKILTKILANRLKEVMPKIIKTTQAYAIKGRDIADITMSIKDIIEYM
;FT                 KEKKEEGYIISLDFEKAFDRVEHQFLFKVLKKFGFGEVFRKWIKILYKGI
;FT                 LTKIKCNGFLTECFKITRSIRQGCPLSALLYSLVAEPLGLAINEEEKIKG
;FT                 IEIEENKVNKKMFQYADDTTLIVKGKESVKEAMKIVQQFCKGSGSKVNED
;FT                 KTVYMKFGKETDLAECTNFKEVEEIKILGVLMGKDARKARDKMWEGFLTD
;FT                 IERRLNYWKLRTLTLKGKVLILNVLMESKLWHVLYVLEMPMWIEKRLKKC
;FT                 FTDFLWGGKPPRIAFNTVVGEIDKGGLGLIDVEQRKNSLRVKRVKKYLEK
;FT                 ENKAEWKKTMKYFLNKCGNFNMGDGILWMKTKAWMTENLPEFYREILGAW
;FT                 GNFLKQVEYSPHGRENILNQPLFLNNNILSQGKVLYYKKWIEVGILKVRD
;FT                 ILYEFKEGFLTEQYVIDTMEEAKEEYNRKEIEKNLDIIKQAIPKEWIRSI
;FT                 EKFEKEKETKEVYVKTGEKICNFNECTVKNIYCFFRENVFKEPTANKYWI
;FT                 EKYKNVKANEIWGNMKGRYVETKVECLEFLIRHKAIFSDVILNKIGMEQS
;FT                 GMCKVCQKEEEGFLHMFLYCQKLEGFLKDCKVLIKGLLGDWDENETEWNR
;FT                 VVMLGWNKNNENKKIVNLCIMLMKNAMWERRIVAKKEKMVMDVWGIFKRK
;FT                 MERYVEKLYVYHKNENILSELHKILTDKACQVFKEMNWKLPHF"
;XX
;DR   Positions  106454  100935  Accession No      AL807749 Genbank
;XX
;SQ   Sequence 5520 BP; 2426 A; 551 C; 1209 G; 1334 T; 0 other;
L1-3_DR
1
;ID   L1-4_DR     DNA   ; ZEB   ; 5548 BP
;XX
;DE   L1-4_DR is a non-LTR retrotransposon from the L1 clade.
;XX
;AC   AL807749
;XX
;DT   04-AUG-2002 (Rel. 7.07, Created)
;DT   19-JUL-2005 (Rel. 7.07, Last updated, Version 3)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 clade;
;KW   L1-4_DR; endonuclease; reverse transcriptase.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 5548)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1-4_DR, a family of non-LTR L1-like retrotransposons from
;RT   zebrafish.
;RL   Repbase Reports 2(7), 24-24 (2002)
;XX
;CC   L1-4_DR is a family of L1-like non-LTR retrotransposon. This
;CC   family was active recently (no stop codons in ORF1;
;CC   a few stop-codons in ORF2).
;CC   It encodes two proteins:
;CC   the 459-aa L1-4_DR1p (positions 171-1547) and the 1294-aa
;CC   L1-4_DR2p
;CC   (positions 1577-5461, a conceptual translation).
;CC   These proteins are most close to corresponding
;CC   proteins encoded by other L1-like elements. L1-4_DR1p is a
;CC   putative
;CC   RNA/DNA binding protein, and L1-4_DR2p is composed of the
;CC   AP endonuclease (aa positions 1-200) and reverse transcriptase
;CC   domains.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           171..1547
;FT                 /product="L1-4_DR1p"
;FT                 /translation="MDTLVKELELKMDYGSMDKATPENNNSRDSNNGIDD
;FT                 NDTWATVVARRRKTKSDTSREGSGEMQQTKGKANAEHLENSQQSSHRNEM
;FT                 INKLKSQARFQRQYKKETTLTMTVKDPENITVTMIIKAVEDKTGIGKLFG
;FT                 LRKKSNFDYELTMENETDCDHLMDGLMINQQFCEVSKLCATERMVSFLNL
;FT                 PNYIQDSEIIQKLVDWGVSPILPLRRRYHPGTTVADGTRFIRVKFPKEVM
;FT                 SLPYNVKFDTEEGPKYFRVIHDQQIKTCRLCGSAEHEKKDCPQFVCRECL
;FT                 EQGHFTRDCKAPRCQGCKKTILWCRCESDEEETGVMETNKQMEKSSNEER
;FT                 EEEVQELPPDDLNEQEEEQAMSEEDEGDTADTEAQDLMKDDGHDMEEEQG
;FT                 AAGENTESRIEEEVSDDDDNEEINIGTKDRTIDSINRRRRKTVQLNIQQV
;FT                 LKKQKLRKEAKAKLKTERTDLRF"
;FT   CDS           join(1577..3517,3516..4724)
;FT                 /product="L1-4_DR2p"
;FT                 /translation="MDCFIWIFFCLDGLFSFIFLMNNLCLVSINVRGLSS
;FT                 KVKFENVIALTKKCDVICIQETGWNENIVNDLKKCWDGEILYNNDPNKKK
;FT                 GMAILIRRGIGYTFDVLFKDNYGRILTIKIMNKDEEIRICNIHAPNEDLE
;FT                 RVTFFKDLSVLMSGWNNVIVLGDFNTVLERIDVDDHMVFRADVGRRELKH
;FT                 MIEKHKYVDVWRERNRAKREYSRRQWVNTVLKQSRLDYVLCTRNVESFIS
;FT                 NIFYKIFSCSDHDFLYVMMDFSGVERGPGVWVFNTELLKNDFYKIEMENI
;FT                 IINSVNDELYDEEISVWWDNVKLEAKRFSIECSKKMQKAKRAKERQLNKE
;FT                 WENEMEKITEGNMDIRRIVILEEKLKKLEEEKCMGARIRSKIKNTVEGER
;FT                 STKFFYDLEKTRQKADLIKNVSTKEKTVKDKESILRTVKDFYETLFKAKG
;FT                 VHEEDKDFLLNQIKVKVSEEDKKLCDSDITEEEINEAITQLSNGKSPGLD
;FT                 GLSSEFYKTFKDVLIPILKDLFIAIFKKGQLSESMKKGMIKIIYKNKGDK
;FT                 DYLQNYRPLSMLNTDYKILAKILANRLKKVVPTLITTNQAYGVIGRDIAD
;FT                 TVTSIRDLIWYIKEKKDEGFLFSIDLEKAFDRVEHSYLFDIIQKFGFGEN
;FT                 FIKWIKCFLYRDIFSCFKINGFLTDYMEISRSIRQGCPLSALLYTLVAEP
;FT                 LGLAINGEKKIKGFKIEINRTEQKIYQYADDTTLFLKDFKSVGKAMEIFD
;FT                 KYCRGSVAKVNKEKTEYMKMGKVDVQQGNWEYKEQKKYINILGITLGYDE
;FT                 NKTREIIWDELINKMEKRLCFWKQRVLFLKGKVLVLNSLFLSKMWYVLSV
;FT                 VSLPTWVYKKLKTMILNFLWDDKPSKIAYNTIIGKVDEGGLRLIDPWIRI
;FT                 KSMRIKTLKKFLNEDNILWKSIMSYFINKCGQIRDDFLWMAFKDRMIENI
;FT                 PEFYEELLRTWKCFYNNIQTEIEGRKLYLQQPLFLNQNNKSKKQMFYENW
;FT                 YAVGFRQVKDILYEIKPGFLPTQAIIDTLEEIEDVDDKEKIEDQYKKLRL
;FT                 ALPDHWIKTIEENE"
;XX
;DR   Positions  100605   95058  Accession No      AL807749 Genbank
;XX
;SQ   Sequence 5548 BP; 2269 A; 553 C; 1134 G; 1592 T; 0 other;
L1-4_DR
1
;ID   L1-99ext_Cis DNA   ; INV   ; 1452 BP
;XX
;DE   L1 Non-LTR Retrotransposon from Ciona savignyi.
;XX
;AC   .
;XX
;DT   06-SEP-2005 (Rel. 10.08, Created)
;DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Ciona savignyi
;XX
;OC   Ciona savignyi
;OC   Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea;
;OC   Enterogona; Phlebobranchia; Cionidae; Ciona.
;XX
;RN   [1]  (bases 1 to 1452)
;RA   Smit,A.F.
;RT   L1-99ext_Cis - L1 Non-LTR Retrotransposon from Ciona savignyi.
;RL   Direct Submission to Repbase Update (06-SEP-2005)
;XX
;CC   Ci000682, Ci000325 appears to be extended ' UTR of L1-99. Ends
;CC   in minisatellite L1-99Sat. Contains Cis1_SINE insert.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1452 BP; 408 A; 286 C; 322 G; 426 T; 10 other;
L1-99ext_Cis
1
;ID   L1C_OC      DNA   ; MAM   ; 4374 BP
;XX
;DE   Direct repeat L10c-4.
;XX
;AC   M18818 X07786 X07787 X07788
;XX
;DT   22-1995 (Rel. 1.11, Created)
;DT   07-FEB-2000 (Rel. 5.01, Last updated, Version 3)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; Beta-globin;
;KW   L1C_OC; delta-globin; epsilon-globin; gamma-globin;
;KW   globin gene cluster; hemoglobin alpha-2 beta-2; pseudogene.
;XX
;OS   Oryctolagus cuniculus
;XX
;OC   Oryctolagus cuniculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
;XX
;RN   [1]  (bases 1 to 4374)
;RA   Margot,B.J., Demers,W.G. and Hardison,C.R.
;RT   Complete nucleotide sequence of the rabbit beta-like globin gene
;RT   cluster. Analysis of intergenic sequences and comparison with
;RT   the human beta-like globin gene cluster.
;RL   J. Mol. Biol 205(1), 15-40 (1989)
;XX
;DR   Positions   33724   38097  Accession No        M18818 GenBank
;XX
;SQ   Sequence 4374 BP; 1697 A; 837 C; 838 G; 1002 T; 0 other;
L1C_OC
1
;ID   L1HS        DNA   ; HUM   ; 6064 BP
;XX
;DE   Human L1 repeat (subfamily L1HS) - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   07-FEB-2005 (Rel. 10.01, Last updated, Version 2)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1HS; L1HS subfamily; L1P1;
;KW   Repetitive sequence; endonuclease domain; reverse transcriptase.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 902)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [2]  (bases 1 to 6064)
;RA   Jurka,J. and Gentles,A.
;RT   Human L1HS complete L1 consensus.
;RL   Direct Submission to Repbase Update (JAN-2005)
;XX
;CC   Currently active source gene in human genome.
;CC   ORF2:
;CC   MTGSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQ
;CC   ANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQV
;CC   LSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYT
;CC   FFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLELRIKNLTQSRSTTWKLNNLL
;CC   LNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAYKRKQERSKIDTLTSQ
;CC   LKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKK
;CC   REKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVES
;CC   LNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEA
;CC   SIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNI
;CC   RKSINVIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTAN
;CC   IILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDM
;CC   IVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMGELPFTIASKRIKY
;CC   LGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKL
;CC   PMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDI
;CC   DQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKIN
;CC   SRWIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKE
;CC   TTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAA
;CC   KKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQP
;CC   LWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPKCPTM
;CC   IDWIKKMWHIYTMEYYAAIKNDEFISFVGTWMKLETIILSKLSQEQKTKHRIFSLIGGN
;CC   ORF1:
;CC   MGKKQNRKTGNSKTQSASPPPKERSSSPATEQSWMENDFDELREEGFRRSNYSELREDIQTKGK
;CC   EVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEM
;CC   KREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQ
;CC   ANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTADLSAE
;CC   TLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFIDKQMLRDFVTTRPALKELLKEA
;CC   LNMERNNRYQPLQNHAKM.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 6064 BP; 2341 A; 1339 C; 1230 G; 1154 T; 0 other;
L1HS
1
;ID   L1M3A_5     DNA   ; ROD   ; 2728 BP
;XX
;DE   L1M3A_5 LINE1 repetitive element - a consensus.
;XX
;AC   .
;XX
;DT   23-JAN-1998 (Rel. 3, Created)
;DT   28-NOV-2000 (Rel. 5.1, Last updated, Version 3)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 repeat;
;KW   L1M3A_5.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 282)
;RA   Smit,A.F.
;RT   L1M3A_5.
;RL   Direct Submission to Repbase Update (1997)
;XX
;RN   [2]  (bases 283 to 2728)
;RA   Jurka,J.
;RT   L1M3A_5.
;RL   Direct Submission to Repbase Update (NOV-2000)
;XX
;CC   5' end of LINE elements connected with L1MA7 and related
;CC   subfamily
;CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos.
;CC   1323).
;XX
;SQ   Sequence 2728 BP; 1025 A; 614 C; 547 G; 505 T; 37 other;
L1M3A_5
1
;ID   L1MA4A      DNA   ; HUM   ; 1050 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MA4A) - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1M1; L1MA4A; L1MA4A subfamily;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 1050)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [2]  (bases 1 to 1050)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 684; average divergence of copies from
;CC   consensus: 13.5%.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 1050 BP; 427 A; 168 C; 211 G; 243 T; 1 other;
L1MA4A
1
;ID   L1MA9       DNA   ; ROD   ; 1059 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1M2; L1MA9; L1MA9 subfamily; MER32;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Jurka,J., Kaplan,J.D., Duncan,H.C., Walichiewicz,J.,
;RA   Milosavljevic,A., Murali,G. and Solus,F.J.
;RT   Identification and characterization of new human medium
;RT   reiteration frequency repeats.
;RL   Nucleic Acids Res 21, 1273-1279 (1993)
;XX
;RN   [2]  (bases 1 to 1059)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [3]  (bases 1 to 1059)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 684; average divergence of copies from
;CC   consensus: 15%.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 1059 BP; 410 A; 167 C; 214 G; 267 T; 1 other;
L1MA9
1
;ID   L1MB3       DNA   ; ROD   ; 930 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1M3; L1MB3; L1MB3 subfamily; MER12;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 672 to 890)
;RA   Kaplan,J.D., Jurka,J., Solus,F.J. and Duncan,H.C.
;RT   Medium reiteration frequency repetitive sequences in the human
;RT   genome.
;RL   Nucleic Acids Res 17, 4731-4738 (1991)
;XX
;RN   [2]  (bases 1 to 930)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [3]  (bases 1 to 930)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 675; average divergence of copies from
;CC   consensus: 15%.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 930 BP; 360 A; 149 C; 197 G; 222 T; 2 other;
L1MB3
1
;ID   L1MB4       DNA   ; HUM   ; 928 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MB4) - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1M3; L1MB4; L1MB4 subfamily;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 928)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [2]  (bases 1 to 928)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 675; average divergence of copies from
;CC   consensus: 16%.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 928 BP; 366 A; 151 C; 186 G; 220 T; 5 other;
L1MB4
1
;ID   L1MC2       DNA   ; ROD   ; 1091 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1M4; L1MC2; L1MC2 subfamily;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 1091)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [2]  (bases 1 to 1091)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 675; average divergence of copies from
;CC   consensus: 16%.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 1091 BP; 414 A; 186 C; 215 G; 271 T; 5 other;
L1MC2
1
;ID   L1MC3       DNA   ; ROD   ; 2487 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
;XX
;AC   .
;XX
;DT   13-JAN-2000 (Rel. 5, Created)
;DT   13-JAN-2000 (Rel. 5, Last updated, Version 4)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1MC3; L1MC3 subfamily; MER42A;
;KW   Repetitive sequence.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1187 to 2487)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [2]  (bases 1 to 2487)
;RA   Smit,A.F.
;RT   L1MC3.
;RL   Direct Submission to Repbase Update (1996)
;XX
;CC   Replaces MER42A.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
L1MC3
1
;ID   L1MC5       DNA   ; ROD   ; 2174 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1MC5) - a consensus.
;XX
;AC   .
;XX
;DT   14-MAY-1998 (Rel. 3.04, Created)
;DT   29-AUG-2000 (Rel. 5.07, Last updated, Version 4)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1MC5; L1MC5 subfamily; Repetitive sequence.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 1351)
;RA   Jurka,J.
;RT   L1MC5.
;RL   Direct Submission to Repbase Update (05-MAY-1998)
;XX
;RN   [2]  (bases 1 to 2174)
;RA   Jurka,J.
;RT   L1MC5.
;RL   Direct Submission to Repbase Update (AUG-2000)
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 2174 BP; 844 A; 289 C; 363 G; 623 T; 55 other;
L1MC5
1
;ID   L1ME3       DNA   ; HUM   ; 909 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1ME3) - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1M4; L1ME3; L1ME3 subfamily; MER36; MER38;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 471 to 728)
;RA   Iris,F., Bougueleret,L., Prieur,S., Caterina,D., Primas,G.,
;RA   Perrot,V., Jurka,J., Rodriguez-Tome,P., Claverie,J., Cohen,D.
;RA   and Dausset,J.
;RT   Dense Alu clustering and a potential new member of the NFkappaB
;RT   family within a 90 kilobase HLA class III segment.
;RL   Nature Genet 3, 137-145 (1993)
;XX
;RN   [2]  (bases 1 to 909)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [3]  (bases 1 to 909)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 675; average divergence of copies from
;CC   consensus: 23%.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 909 BP; 351 A; 163 C; 174 G; 216 T; 5 other;
L1ME3
1
;ID   L1ME4A      DNA   ; ROD   ; 868 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1ME4A) - a consensus.
;XX
;AC   .
;XX
;DT   31-MAY-2001 (Rel. 6.04, Created)
;DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1ME4A; L1ME4A subfamily; Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 868)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 678; average divergence of copies from
;CC   consensus: 27%
;CC   First 50 bp are from L1ME3A. bp 398-868 are 79% similar to
;CC   L1ME5.
;CC   High divergence may indicate that it represents several
;CC   subfamilies.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 868 BP; 344 A; 129 C; 139 G; 243 T; 13 other;
L1ME4A
1
;ID   L1ME_ORF2   DNA   ; ROD   ; 3285 BP
;XX
;DE   Primate L1ME LINE1 repetitive element - a consensus.
;XX
;AC   .
;XX
;DT   13-JAN-2000 (Rel. 5, Created)
;DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1ME subfamily;
;KW   L1ME_ORF2; LINE1.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 328)
;RA   Smit,A.F.
;RT   L1ME_ORF2.
;RL   Direct Submission to Repbase Update (1997)
;XX
;RN   [2]  (bases 329 to 1639)
;RA   Jurka,J.
;RT   L1ME_ORF2.
;RL   Direct Submission to Repbase Update (JUL-1999)
;XX
;CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
;CC   elements with L1ME subfamily 3' UTRs.
;XX
;SQ   Sequence 3285 BP; 1507 A; 533 C; 470 G; 717 T; 58 other;
L1ME_ORF2
1
;ID   L1PA16      DNA   ; HUM   ; 913 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1PA16) - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1P4; L1PA16; L1PA16 subfamily;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 913)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [2]  (bases 1 to 913)
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 684; average divergence of copies from
;CC   consensus: 12.5%.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 913 BP; 364 A; 189 C; 179 G; 181 T; 0 other;
L1PA16
1
;ID   L1PA7_5     DNA   ; HUM   ; 1727 BP
;XX
;DE   L1PA7_5 - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1P5A1;
;KW   L1PA7_5; Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 1727)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1PA7_5.
;RL   Direct Submission to Repbase Update (1996)
;XX
;CC   L1PA7_5 is a consensus sequence for a subfamily of L1. This
;CC   1.7 kb consensus corresponds to the 1.4 kb 5' region of L1 from
;CC   REPBASE.
;CC   Average similarity of L1PA7_5 sequences to the consensus is
;CC   0.93.
;CC   The subfamily consensus contains multiple diagnostic
;CC   positions and multiple long insertions of 180 bp (between
;CC   positions 348 and 349 in L1 from REPBASE), 176 bp (positions
;CC   586-587), 27 bp (380-381), 19 bp (469-470), 23 bp (759-760) and
;CC   25 bp (952-953).
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1727 BP; 486 A; 462 C; 472 G; 302 T; 5 other;
L1PA7_5
1
;ID   L1PB4       DNA   ; HUM   ; 903 BP
;XX
;DE   3'-end of L1 repeat (subfamily L1PB4) - a consensus.
;XX
;AC   .
;XX
;DT   23-JUN-2000 (Rel. 5.05, Created)
;DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; L1P5; L1PB4; L1PB4 subfamily;
;KW   Repetitive sequence.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 903)
;RA   Smit,A.F.
;RT   L1PB4.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;CC   ORF2 ends at bp 684; average divergence of copies from
;CC   consensus: 13%
;CC   Subfamily linking the PB LINEs with the MA LINEs (via MA4A).
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 903 BP; 369 A; 169 C; 169 G; 192 T; 4 other;
L1PB4
1
;ID   L1PREC1     DNA   ; HUM   ; 6460 BP
;XX
;DE   L1PREC1 is a subfamily of L1 - a consensus sequence.
;XX
;AC   .
;XX
;DT   05-OCT-2000 (Rel. 5.09, Created)
;DT   05-OCT-2000 (Rel. 5.09, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 subfamily;
;KW   L1P3B_5; L1PA8A; L1PAXX_5; L1PREC1; LINE1; ORF1; ORF2;
;KW   endonuclease; reverse transcriptase.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 606)
;RA   Jurka,J.
;RT   L1PREC1.
;RL   Direct Submission to Repbase Update (MAR-1999)
;XX
;RN   [2]  (bases 607 to 1608)
;RA   Jurka,J.
;RT   L1PREC1.
;RL   Direct Submission to Repbase Update (JAN-2000)
;XX
;RN   [3]  (bases 5565 to 6460)
;RA   Smit,A.F.
;RT   L1PREC1.
;RL   Direct Submission to Repbase Update (03-MAY-2000)
;XX
;RN   [4]  (bases 1 to 6460)
;RA   Kapitonov,V.V.
;RT   L1PREC1.
;RL   Direct Submission to Repbase Update (04-OCT-2000)
;XX
;CC   It is a complete consensus sequence of the L1PREC1 subfamily of
;CC   L1. Average divergence of L1PREC1 copies from the consensus
;CC   sequence
;CC   is 7%. 5'- and 3'-ends of L1PREC1 were reported as L1P3B_5 [1-2]
;CC   and
;CC   L1PA8A [3], respectively.
;CC   A putative 341aa RNA-binding protein is encoded by
;CC   ORF1 (position 1331-2356):
;CC   MRKNQRKNTENPKGQSASSPPNDRNASPARAQNWTEDEMDELTEVGFRRWVIKNSAELKEHVLTQCKEAK
;CC   NLDKRLEELLTRITSLERNINDLMELKNTARELCEAYTSINSRIDQAEERISEFEDHLAEIRHADKIREK
;CC   RMKRNEQSLQEIWDFVKRPNLRLIGVPEGDGENGTKLENTLQDIIQENFPNLARQANMQIQEIQRTPLRY
;CC   STRRSTPRHIIIRFSKVEMKEKMLRAAREKGQVTYKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQ
;CC   PRISYPAKLSFISEGEIKSFPDKQMLRDFVTTRPALQELLKEALNMERKNRYQPLQKHTKI
;CC   A 1210aa protein composed of the endonuclease and reverse
;CC   transcriptase domains is encoded by ORF2 (position 2616-6248):
;CC   MESKKKAGVAILVSDKTDFKPTKIKKDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLRDLQRD
;CC   LDSHTIIVGDFNTPLSILDRSTRQKINKDIQDLNSALDQVDLIDIYRTLHPKSTEYTFFSVPHGTYSKID
;CC   HIIGSKTLLSKCKRTEIITNSLSDHSAIKLELRIKKLTQNHTITWKLNNLLLNDSWVNNEIKAEIKKFFE
;CC   TNENKETTYQNLWDTAKAVLRGKFIALNAHIRKLERSQIDTLTSQLKELERQEQTNPKASRRQEITKIRA
;CC   ELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYY
;CC   KHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAVINSLPTKKSPGPDGFTAEFYQRYK
;CC   EELVPFLLKLFQTIEKEGLLPNSFYEASIILIPKPGRDTTKKENFRPISLMNINAKILNKILANRIQQHI
;CC   KKLIHHDQVGFIPGMQGWFNIRKSINVIHHINRTNDKNHMIISIDAEKAFDKIQHPFMLKTLNKLGIDGT
;CC   YLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGREEV
;CC   KLSLFADDMIVYLENPIISAQKLLKLISNFSKVSGYKINVQKSQAFLYTNNRQAESQIMNELPFTIATKR
;CC   IKYLGIQLTRDVKDLFKENYKPLLKEIREDTNKWKNIPSSWIGRINIVKMAILPKVIYRFNAIPIKLPLT
;CC   FFTELEKTTLNFIWNQRRPRIAKTILSKKNKAGGITLPDFKLYYKATVTKTAWYWYQNRHIDQWNRTETS
;CC   EITPHIYNHLIFNKPDKNKQWGKDLLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIK
;CC   TLEENLGNTIQDIGMGKDFMTKTPKAIATKAKIDKWDLIKLKSFCTAKETIIRVNRQPTEWEKIFAIYPS
;CC   DKGLISRIYKELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAANKHMKKSSTSLIIREMQIKTTMRYHLT
;CC   PVRMAIIKKSGNNRCWRGCGEIGTLLHCWWECKLVQPLWKTVWRFLKDLEPEIPFDPAIPLLGIYPKEYK
;CC   SFYYKDTCTRMFIAALFTIAKTWNQPKCPSMIDWIKKMWYIYTMEYYAAIKKNEIMSFAGTWMKLEAIIL
;CC   SKLTQEQKTKHHMFSLISGS
;CC   L1PREC1 is a putative recombination product of two different
;CC   subfamilies of L1. Its 5'-portion (position 1-1739) is 68%
;CC   identical
;CC   to a 5'-portion of L1 (position 2-1428) whereas the remaining
;CC   portion
;CC   of L1PREC1 (position 1740-5714) is 93% identical to the
;CC   remaining
;CC   portion of L1 (position 1430-5403). The recombination position,
;CC   1740,
;CC   splits the RNA-binding protein encoded by ORF1 into 2 domains:
;CC   the first 137-aa domain is only 49% identical to the
;CC   corresponding
;CC   portion of a protein encoded by ORF1 in L1.
;XX
;DR   [4] (Consensus)
;XX
;SQ   Sequence 6460 BP; 2445 A; 1522 C; 1310 G; 1183 T; 0 other;
L1PREC1
1
;ID   L1P_MA2     DNA   ; ROD   ; 7678 BP
;XX
;DE   LINE1 subfamily consensus; L1PMA2 subfamily.
;XX
;AC   .
;XX
;DT   13-JAN-2000 (Rel. 5, Created)
;DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 subfamily;
;KW   L1M1_5; L1M3_5; L1MA2; L1P_MA2; LINE1; MER14; MER43.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1725 to 1900)
;RA   Rubin,M.C., Leeflang,P.E., Rinehart,P.F. and Schmid,W.C.
;RT   Paucity of novel short interspersed repetitive element (SINE)
;RT   families in human DNA and isolation of a novel MER repeat.
;RL   Genomics 18, 322-328 (1993)
;XX
;RN   [2]  (bases 966 to 1089)
;RA   Smit,A.F.
;RT   Structure and evolution of mammalian interspersed repeats.
;RL   Ph.D. thesis (USC 1995)
;XX
;RN   [3]  (bases 7 to 2259)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1P_MA2.
;RL   Direct Submission to Repbase Update (1996)
;XX
;RN   [4]  (bases 7 to 3803)
;RA   Smit,A.F.
;RT   L1P_MA2.
;RL   Direct Submission to Repbase Update (1996)
;XX
;RN   [5]  (bases 7520 to 7657)
;RA   Kaplan,J.D., Jurka,J., Solus,F.J. and Duncan,H.C.
;RT   Medium reiteration frequency repetitive sequences in the human
;RT   genome.
;RL   Nucleic Acids Res 17, 4731-4738 (1991)
;XX
;RN   [6]  (bases 6635 to 7678)
;RA   Smit,A.F., Toth,G., Riggs,D.A. and Jurka,J.
;RT   Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
;RT   sequences.
;RL   J. Mol. Biol 246, 401-417 (1995)
;XX
;RN   [7]  (bases 1 to 7678)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   L1P_MA2.
;RL   Direct Submission to Repbase Update (05-1997)
;XX
;CC   Complete consensus sequence of L1 subfamily L1PM2; average
;CC   divergence
;CC   of L1P_MA2 sequences from their consensus is about 13%.
;CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2
;CC   consensus sequence, respectively.
;XX
;DR   [7] (Consensus)
;XX
;SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 other;
L1P_MA2
1
;ID   L1_BT       DNA   ; MAM   ; 1161 BP
;XX
;DE   L1 Non-LTR Retrotransposon from Bovidae.
;XX
;AC   .
;XX
;DT   06-SEP-2005 (Rel. 10.08, Created)
;DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Bovidae
;XX
;OC   Bovidae
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora.
;XX
;RN   [1]  (bases 1 to 1161)
;RA   Smit,A.F.
;RT   L1_BT - L1 Non-LTR Retrotransposon from Bovidae.
;RL   Direct Submission to Repbase Update (06-SEP-2005)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1161 BP; 449 A; 203 C; 269 G; 240 T; 0 other;
L1_BT
1
;ID   L1_Fc_orf2  DNA   ; MAM   ; 3292 BP
;XX
;DE   L1 Non-LTR Retrotransposon from Felis.
;XX
;AC   .
;XX
;DT   06-SEP-2005 (Rel. 10.08, Created)
;DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Felis
;XX
;OC   Felis
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae.
;XX
;RN   [1]  (bases 1 to 3292)
;RA   Smit,A.F.
;RT   L1_Fc_orf2 - L1 Non-LTR Retrotransposon from Felis.
;RL   Direct Submission to Repbase Update (06-SEP-2005)
;XX
;CC   4% div.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 3292 BP; 1377 A; 661 C; 583 G; 669 T; 2 other;
L1_Fc_orf2
1
;ID   L1_Felid    DNA   ; MAM   ; 941 BP
;XX
;DE   L1 Non-LTR Retrotransposon from cats.
;XX
;AC   .
;XX
;DT   06-SEP-2005 (Rel. 10.08, Created)
;DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
;XX
;OS   Felidae
;XX
;OC   Felidae
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia.
;XX
;RN   [1]  (bases 1 to 941)
;RA   Smit,A.F.
;RT   L1_Felid - L1 Non-LTR Retrotransposon from cats.
;RL   Direct Submission to Repbase Update (06-SEP-2005)
;XX
;CC   11% div;  first 266 bp of L1_Fc.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 941 BP; 374 A; 169 C; 192 G; 198 T; 8 other;
L1_Felid
1
;ID   L1_MM       DNA   ; ROD   ; 6398 BP
;XX
;DE   Mouse L1 repetitive sequence.
;XX
;AC   M29324
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 3)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1_MM; LINE1;
;KW   MML1; Repetitive sequence.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 6398)
;RA   Shehee,R.W., Chao,F.S., Loeb,D.D., Comer,B.M., Hutchison,A.C.
;RA   and Edgell,H.M.
;RT   Determination of a functional ancestral sequence and definition
;RT   of the 5' end of A-type mouse L1 elements.
;RL   J. Mol. Biol 196, 757-767 (1987)
;XX
;DR   Positions    1092    7489  Accession No        M29324 GenBank
;XX
;SQ   Sequence 6398 BP; 2439 A; 1427 C; 1265 G; 1267 T; 0 other;
L1_MM
1
;ID   L1_RN       DNA   ; ROD   ; 6914 BP
;XX
;DE   L1 element from Rattus norvegicus - a consensus.
;XX
;AC   .
;XX
;DT   02-MAY-2002 (Rel. 7.04, Created)
;DT   02-MAY-2002 (Rel. 7.04, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 element;
;KW   L1_RN; LINE1; LINE3_RN.
;XX
;OS   Rattus norvegicus
;XX
;OC   Rattus norvegicus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Rattus.
;XX
;RN   [1]
;RA   Shore,K.S., Bacheler,T.L., de Riel,K.J., Barrows,R.L.
;RA   and Lynch,J.M.
;RT   Cloning and characterization of a rat-specific repetitive DNA
;RT   sequence.
;RL   Gene 45, 87-93 (1986)
;XX
;RN   [2]
;RA   Cabot,L.E., Angeletti,B., Usdin,K. and Furano,V.A.
;RT   Rapid evolution of a young L1 (LINE-1) clade in recently
;RT   speciated Rattus taxa.
;RL   J. Mol. Evol 45(4), 412-423 (1997)
;XX
;RN   [3]  (bases 1 to 6914)
;RA   Jurka,J.
;RT   L1_RN: a consensus approximating active L1 subfamilies in Rats.
;RL   Direct Submission to Repbase Update (25-APR-2002)
;XX
;CC   This consensus is over 97% identical with most active
;CC   L1 elements in rats.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 6914 BP; 2695 A; 1549 C; 1404 G; 1259 T; 7 other;
L1_RN
1
;ID   L2A         DNA   ; ROD   ; 3314 BP
;XX
;DE   L2A (MIR2/LINE2) non-LTR retrotransposon - a consensus.
;XX
;AC   .
;XX
;DT   22-AUG-2000 (Rel. 5.07, Created)
;DT   22-AUG-2000 (Rel. 5.07, Last updated, Version 1)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L2 family;
;KW   L2A; LINE; LINE2; MIR2; MIR2/LINE2.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 3265 to 3314)
;RA   Degen,J.S. and Davie,W.E.
;RT   Nucleotide sequence of the gene for human prothrombin.
;RL   Biochemistry 26, 6165-6177 (1987)
;XX
;RN   [2]  (bases 3165 to 3314)
;RA   Smit,A.F. and Riggs,D.A.
;RT   MIRs are classic tRNA-derived SINEs that amplified before the
;RT   mammalian radiation.
;RL   Nucl. Acids. Res 23, 98-102 (1995)
;XX
;RN   [3]  (bases 565 to 3314)
;RA   Smit,A.F.
;RT   L2A.
;RL   Direct Submission to Repbase Update (1996)
;XX
;RN   [4]  (bases 1 to 3314)
;RA   Smit,A.F.
;RT   L2A.
;RL   Direct Submission to Repbase Update (1999)
;XX
;CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
;CC   This is a consensus sequence for LINE2 subfamily A. The MIR SINE
;CC   shares the 3' terminal 50 bp and was co-amplified with LINE2.
;CC   The 5'
;CC   end is probably still incomplete. The ORF from bp 189-2691
;CC   encodes a
;CC   product 59% similar (39% identical) to the
;CC   reverse-transcriptase-like
;CC   protein of a LINE-like element in pufferfish (GenBank acc#
;CC   AAD19348).
;CC   Note that, whereas L1 is A- and purine rich in the coding
;CC   strand, L2
;CC   is C- and pyrimidine (65%) rich.
;CC   There may be more than 300,000 copies of LINE2 in our genome.
;CC   LINE2
;CC   spread before the mammalian radiation, and copies are only
;CC   65-75%
;CC   similar to this consensus sequence.
;XX
;DR   [4] (Consensus)
;XX
;SQ   Sequence 3314 BP; 706 A; 1249 C; 420 G; 915 T; 24 other;
L2A
1
;ID   L2B         DNA   ; ROD   ; 419 BP
;XX
;DE   3'-end of L2 (LINE2) repeat (subfamily b) - a consensus.
;XX
;AC   .
;XX
;DT   22-AUG-2000 (Rel. 5.07, Created)
;DT   22-AUG-2000 (Rel. 5.07, Last updated, Version 1)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L2 (LINE) family; L2B; LINE2B subfamily; Repetitive sequence.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 419)
;RA   Smit,A.F.
;RT   L2B.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   Average divergence from consensus 30%.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 419 BP; 61 A; 154 C; 88 G; 107 T; 9 other;
L2B
1
;ID   LTR27       DNA   ; HUM   ; 636 BP
;XX
;DE   Long terminal repeat of endogenous retrovirus - a consensus.
;XX
;AC   .
;XX
;DT   02-1997 (Rel. 2.11, Created)
;DT   02-1997 (Rel. 2.11, Last updated, Version 1)
;XX
;KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; LTR27;
;KW   MER4I-MER41I-MER57I-MER65I group.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 636)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   LTR27.
;RL   Direct Submission to Repbase Update (21-NOV-1997)
;XX
;CC   LTR of endogenous retroviruses related to
;CC   MER4I-MER41I-MER57I-MER65I.
;CC   LTR27 elements share common fragments with LTR20; MER52 and
;CC   MER61C.
;CC   The average similarity of LTR27 sequences to the consensus
;CC   sequence
;CC   is about 85%. 4 bp target site duplications.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 636 BP; 145 A; 183 C; 142 G; 166 T; 0 other;
LTR27
1
;ID   LTR48       DNA   ; ROD   ; 787 BP
;XX
;DE   Long terminal repeat of endogenous retrovirus - a consensus.
;XX
;AC   .
;XX
;DT   31-MAY-2001 (Rel. 6.04, Created)
;DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
;XX
;KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; LTR48;
;KW   putative MER4I-MER41I-MER57I-MER65I group.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 787)
;RA   Jurka,J. and Naik,A.
;RT   LTR48.
;RL   Direct Submission to Repbase Update (22-JUL-1998)
;XX
;CC   Partially similar to LTR29, MER34 and MER39.
;CC   Over 3000 copies in the human genome.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 787 BP; 205 A; 215 C; 126 G; 233 T; 8 other;
LTR48
1
;ID   LX          DNA   ; ROD   ; 1054 BP
;XX
;DE   Murid LINE repeat sequence 3' end - a consensus.
;XX
;AC   .
;XX
;DT   25-APR-1997 (Rel. 2.03, Created)
;DT   25-APR-1997 (Rel. 2.03, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 family;
;KW   LINE; Lx.
;XX
;OS   Muridae
;XX
;OC   Muridae
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi.
;XX
;RN   [1]
;RA   Pascale,E., Liu,C., Valle,E., Usdin,K. and Furano,V.A.
;RT   The evolution of long interspersed repeated DNA (L1, LINE 1) as
;RT   revealed by the analysis of an ancient rodent L1 DNA family.
;RL   J.Mol.Evol. 1993 Jan. 36(1). P 9-20.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1054 BP; 353 A; 226 C; 269 G; 183 T; 23 other;
LX
1
;ID   LX9         DNA   ; ROD   ; 1202 BP
;XX
;DE   3'-end of L1 repeat (subfamily LX9) - a consensus.
;XX
;AC   .
;XX
;DT   26-SEP-1997 (Rel. 2.08, Created)
;DT   26-SEP-1997 (Rel. 2.08, Last updated, Version 1)
;XX
;KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   L1 (LINE) family; LX9; LX9 subfamily; Repetitive sequence.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 1202)
;RA   Smit,A.F.
;RT   LX9.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   Partial 3' untranslated region of rodent LINE1 subfamily LX9.
;CC   The nomenclature for the rodent LINE1 subfamilies (as based on
;CC   the
;CC   3' ends) is temporary, awaiting analysis of their relationship.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1202 BP; 314 A; 247 C; 326 G; 290 T; 25 other;
LX9
1
;ID   MAX_I       DNA   ; DRO   ; 7914 BP
;XX
;DE   MAX_I is an internal portion of the MAX endogenous retrovirus.
;XX
;AC   AJ487856
;XX
;DT   14-NOV-2002 (Rel. 7.1, Created)
;DT   14-NOV-2002 (Rel. 7.1, Last updated, Version 1)
;XX
;KW   BEL; LTR Retrotransposon; Interspersed Repeat; BCDRP superfamily;
;KW   BEL-PAO superfamily; MAX; MAX_I; MAX_LTR; endogenous retrovirus;
;KW   polyprotein.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 7914)
;RA   Marsano,M.R. and Caizzi,R.
;RT   Max: a new retrotransposon of Drosophila melanogaster which
;RT   interrupts the Bari-1 repeats in the heterochromatic h39 region.
;RL   Unpublished
;XX
;RN   [2]  (bases 1 to 7914)
;RA   Marsano,M.R. and Caizzi,R.
;RT   Direct Submission to GenBank.
;RL   Direct Submission to Genbank (20-MAY-2002)Marsano R.,
;RL   DAPEG-Section of Genetics University of Bari, Via Amendola,
;RL   165/A, 70126, ITALY
;XX
;CC   MAX is a family of endogenous retroviruses that belong to the
;CC   BSCDRP (or BEL-PAO) superfamily.
;CC   It is flanked by 5-bp target site duplications.
;CC   MAX_I is 66% identical to BATUMI_I.
;CC   MAX_I encodes the 1830-aa MAXp polyprotein (positions 1389-6891)
;CC   and it is flanked by 99% identical MAX_LTR long terminal
;CC   repeats.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           1392..6878
;FT                 /product="MAXp"
;FT                 /translation="PLEGDKKKTPAPGKEQKFNPQSPISTRGRPAPKSVS
;FT                 PRVKTATPTPKPKVLPSTSSKTTPRLVISRPVTRASSESSLSRKSESPSA
;FT                 VGTDFLRVTRSTTKRMASSEQPTPANAALHKFIAVSDRVSLFEAKINTPD
;FT                 QASPSLHTLQVRLQQVRALWDKVEREYETCSDLMAQEGSLDTVPILQAKY
;FT                 DYCYSVYESCAAQIGETIDRATPQVAQAPSQPLISSGCRLPPCDTEVFDG
;FT                 DYLRWPTFRDLFTAIYVNNPRLTPVEKLFHLLTKTSGEAKAIVAKSPLTN
;FT                 DGFASAWEALRDRFQNKRLLVNSQLKLLFNLSSISQESGHALKELQSTIQ
;FT                 GCLTALEHSQVSTENWDCILVFLCASKLPKQTLSLWEQSLTAKSEIPAWE
;FT                 EMNAFLSERYRTLEAIEDMKPTQAVPKRLQSFETKVSTKQKGCDICSKEN
;FT                 HPVRLCPRFLQMSVDSRSGYIKKKQLCLNCFARGHQLRDCTSMHSCFTCK
;FT                 GRHHTLLHRSPPNSENASSSTSPPTQQLPRPSSRNASASTSAVQNFFASG
;FT                 TSAVLLSTAMIDVCHLGTNYRARALIDSGSEATFISERLFNLIKLPFRNT
;FT                 RTQVSGLNHSVSAKSSKLCHFGIRSPTKPGLQLDTEAYVLPELSGKLPSY
;FT                 PIPRNSLKDLPALRWADPTFFESSQIDVLIGADILPSIMMDGTRQNICGS
;FT                 LLGQETIFGWVLTGPISKGKPKRVASFTTQVHQTGDPDSLDTLLSKFWEV
;FT                 EDLPVKMVKESDSYCERNFLQTTTKDASGRYVVTLPFRDPENTGSDLGYS
;FT                 RSIALAQFLRNENRLKRDFPLKEQYDSVIQEYLDLGHMKEVPPTHNSPSY
;FT                 HLPHHAVVKPESTTTKLRVVFNASSPSANGISLNDILHAGPVLQSDLTIQ
;FT                 VLKWRYFQYVFSADITKMYRQIWVDPKHTPFQRILFRNKEGDIRDFELKT
;FT                 VTFGVNCAPFLAIRVLQQLAEDIQVPFPNASRIIQQHMYVDDVLAGANSV
;FT                 NEAQSSIRELQAALSASGFPLRKWTSNNKSVLKDVPAEHLLHSEFLDIDA
;FT                 ESTAKTLGIRWRAKSDEFYFVPPDIVVEASYTKREVLSQIARLFDPAGWL
;FT                 APFIIRSKIFMQEIWLQNLGWDDKLPTEMSQRWQSFLEEYSDLNQIRVPR
;FT                 WIWYQPEVVIEHHGFCDASQRAYGAAIYIRVEMGQKILTRLLTAKTRVAP
;FT                 VKTVSLPRLELCGAVLLTEMVTAILPHMPSASSDIRCWTDSTIVLAWLRK
;FT                 PACNWTTFVANRVAKITQATPVDCWAHVRSEQNSADLASRGVSLQELAEN
;FT                 HLWWHGPEWLQGPRELWPAQSDTLPVTELEQRAVKVHFVKGPSIDFLERF
;FT                 SKLDKALRVLVYVQRFFKRCRKGSFLPSSRPTSEEIREAERTLTSIAQRR
;FT                 AYGQELQHLTEKRPLPVSSPLVTLFPFIDQHGLLRACGRLTASKTLQYDE
;FT                 RHPILLPYDCRLSRLIVQFTHQITLHGGSQLIVRLIRTKYWIPKIKNLVK
;FT                 AVVNPCKICTIYKKRLQTQLMGDFPTDRVSFSRAFTYTGIDYAGPFEIKN
;FT                 YTGRACLITKGYVCVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVARRGC
;FT                 PQRVHSDNGKTFVGAAALISRDFLQAIKESVTDAYSHQGLVWRFIPPGAP
;FT                 HMGGLWEAGVKSFKTLFLKSTSVRKYTFEELATLLAKIEACLNSRPLSPM
;FT                 SEDPSDLLALTPGHFLIGGPLLSTAEPEIKGEAKSIINRWQHLKAQHQQF
;FT                 SARWKEEYLKELHKRSKWQFPTRNLQADDMVVVKEDNLPPNEWRLGRIVS
;FT                 AFPGADERIRVVEIRTSRGTIKRPVHKVILLPMEDKESSVPRD"
;XX
;DR   Positions     394    8307  Accession No      AJ487856 Genbank
;XX
;SQ   Sequence 7914 BP; 2077 A; 2123 C; 1753 G; 1961 T; 0 other;
MAX_I
1
;ID   MDR2        DNA   ; ORY   ; 6967 BP
;XX
;DE   MuDR-type DNA transposon from O. sativa.
;XX
;AC   AC096690
;XX
;DT   16-SEP-2005 (Rel. 10.09, Created)
;DT   16-SEP-2005 (Rel. 10.09, Last updated, Version 1)
;XX
;KW   MuDR; DNA transposon; Interspersed Repeat.
;XX
;OS   Oryza sativa (japonica cultivar-group)
;XX
;OC   Oryza sativa (japonica cultivar-group)
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
;XX
;RN   [1]  (bases 1395 to 5948)
;RA   Buell,C.R., Yuan,Q., Ouyang,S., Liu,J., Gansberger,K.,
;RA   Jones,K.M., Overton II,L.L., Tsitrin,T., Kim,M.M., Bera,J.J.,
;RA   Jin,S.S., Fadrosh,D.W., Tallon,L.J., Koo,H., Zismann,V.,
;RA   Hsiao,J., Blunt,S., Vanaken,S.S., Riedmuller,S.B.,
;RA   Utterback,T.T., Feldblyum,T.V., Yang,Q.Q., Haas,B.J., Suh,B.B.,
;RA   Peterson,J.J., Quackenbush,J., White,O., Salzberg,S.L.
;RA   and Fraser,C.M.
;RT   Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic seq.
;RL   Unpublished (2003)
;XX
;RN   [2]  (bases 1 to 6967)
;RA   Jurka,J.
;RT   MDR2: MuDR-type DNA transposon from rice.
;RL   Repbase Reports 5(9), 266-266 (2005)
;XX
;CC   The ORF portion was first described as "putative mutator-like
;CC   transposase" in ref. 1. The entire transposon is reported here.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           1395..3932
;FT                 /product="MDR2_1p"
;FT                 /translation="MADVEVREENDPVREEVHAEENVPLREEVHAEDNVP
;FT                 LREEANVEENVPVREEGDVEDGREVGDDVELPEEEANAKNVSMGLRELAR
;FT                 LKFYTREECEEAMIRSGLNPAWLEYDTEDELDESASDSDDDRPVRKMSEH
;FT                 ERTVFAKLVGRNPEITQFEDLTRSGLAIADGDTQYDGAFEPMCDEPRKGL
;FT                 EFRSMDDLKIWLQSYSIRVHRPYHVKESNASVKYTVACLDRHCKWQINAR
;FT                 KSGGDRWRVTRVGEDHTCCSAEVTGKHLQLTSRFIGNRLQAFVRAEPTLS
;FT                 PAAIVEAVEQIWHYRPTYGKAWRAKQVAMKVIWGDWDEAYVRLPTLMRAI
;FT                 KAKNPTMHFRIEAHPEKSRMVDGVQRRVFGRAYWIFGQSIEAFKHLRPVL
;FT                 AIDGTFLTGKYQGTLLTAIGVDAGLHLVPLAFALVEKENTSNWEWFINML
;FT                 RNKLIGPNREVCIISDRHPGILNSIIHIMPHHLTIHHRWCMRHFCANFYT
;FT                 AGATTDQMKDLERICQINEKALFLDEIKRLMGVVGERPKKWLEDHMPLKV
;FT                 KWARAFDTNGRRHSIMTSNMAESFNNVLRGIRKLPVTAIVAYTFSKCNSW
;FT                 FVDRHKEATVDILCGKKWPTKVKDILEEQQRRTLGQRAACFDFPSMKYEV
;FT                 SEQGGVTAAGVQWGGRHYVVVARDNTCSCQFPQLHHLPCSHMITVCKLRG
;FT                 LDVEVAPRMCYEASNKAVQDSYSPRFEPYLDPSQWPSYDGEFFVPDLSLK
;FT                 NNTRGRRRTRRFKNDMDKAYKGSANRRSQKPNNTNSEPVMQNRCSLCHEL
;FT                 GHKKTRCPKRDKSKDRPKKRRTTGGGGEGSTQVGLDDIHLLSSYCCFNVY
;FT                 FLLSSFPFSL"
;XX
;DR   Positions  100413   93447  Accession No      AC096690 EMBL/GenBank/DDBJ
;XX
;SQ   Sequence 6967 BP; 1788 A; 1442 C; 1987 G; 1750 T; 0 other;
MDR2
1
;ID   MEGY-LTR_MT DNA   ; PLN   ; 1279 BP
;XX
;DE   Medicago truncatula LTR retrotransposon MEGY-1 (LTR).
;XX
;AC   AC146683
;XX
;DT   09-JUN-2005 (Rel. 10.05, Created)
;DT   09-JUN-2005 (Rel. 10.05, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; Metaviridae;
;KW   Long terminal repeat; MEGY-LTR_MT.
;XX
;OS   Medicago truncatula
;XX
;OC   Medicago truncatula
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids I; Fabales; Fabaceae;
;OC   Papilionoideae; Trifolieae; Medicago.
;XX
;RN   [1]  (bases 1 to 1279)
;RA   Neumann,P., Pozarkova,D., Koblizkova,A. and Macas,J.
;RT   PIGY, a new plant envelope-class LTR retrotransposon.
;RL   Mol Genet Genomics 273(1), 43-53 (2005)
;XX
;RN   [2]  (bases 1 to 1279)
;RA   Lin,S., Dixon,R., May,G., Sumner,L., Gonzales,B., Cook,D., Kim,D.
;RA   and Roe,B.A.
;RG   Department Of Chemistry And Biochemistry, The University Of
;RG   Oklahoma, 620RL Parrington Oval, Room 208, Norman, OK 73019, USA
;RT   MEGY-1 LTR retrotransposon.
;RL   Direct Submission to EMBL/GenBank/DDBJ (12-2003)
;XX
;RN   [3]  (bases 1 to 1279)
;RA   Toth,G.
;RT   Medicago truncatula LTR retrotransposon MEGY-1.
;RL   Direct Submission to Genbank (09-JUN-2005)
;XX
;CC   Long terminal repeat of Ty3/gypsy-like retrotransposon MEGY-1.
;CC   5bp
;CC   target site duplications.
;XX
;DR   Positions  124339  125617  Accession No      AC146683 Genbank
;XX
;SQ   Sequence 1279 BP; 388 A; 223 C; 227 G; 441 T; 0 other;
MEGY-LTR_MT
1
;ID   MEN         DNA   ; ROD   ; 269 BP
;XX
;DE   SINE2 SINE from Menetes.
;XX
;AC   .
;XX
;DT   06-SEP-2005 (Rel. 10.08, Created)
;DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   SINE2; SINE; Interspersed Repeat.
;XX
;OS   Menetes
;XX
;OC   Menetes
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Sciuridae;
;OC   Sciurinae.
;XX
;RN   [1]  (bases 1 to 269)
;RA   Smit,A.F.
;RT   MEN - SINE2 SINE from Menetes.
;RL   Direct Submission to Repbase Update (06-SEP-2005)
;XX
;CC   Groundsquirrel.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 269 BP; 82 A; 63 C; 73 G; 46 T; 5 other;
MEN
1
;ID   MER117      DNA   ; ROD   ; 197 BP
;XX
;DE   Putative non-autonomous DNA transposon.
;XX
;AC   .
;XX
;DT   01-APR-1999 (Rel. 4.03, Created)
;DT   01-APR-1999 (Rel. 4.03, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; MER117.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 197)
;RA   Jurka,J. and Kapitonov,V.V.
;RT   MER117.
;RL   Direct Submission to Repbase Update (MAR-1999)
;XX
;CC   15 bp terminal inverted repeats. Presumably hobo-superfamily,
;CC   based on similarities in TIRs. 71% similarity to consensus.
;CC   Present in mouse.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 197 BP; 43 A; 32 C; 65 G; 54 T; 3 other;
MER117
1
;ID   MER3        DNA   ; ROD   ; 209 BP
;XX
;DE   Nonautonomous DNA transposon.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat;
;KW   Interspersed repetitive sequence; MER3.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]
;RA   Jurka,J.
;RT   Novel families of interspersed repetitive elements from the
;RT   human genome.
;RL   Nucleic Acids Res 18(1), 137-141 (1990)
;XX
;RN   [2]  (bases 1 to 209)
;RA   Smit,A.F. and Riggs,D.A.
;RT   Tiggers and other DNA transposon fossils in the human genome.
;RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996)
;XX
;CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 other;
MER3
1
;ID   MER30       DNA   ; VRT   ; 230 BP
;XX
;DE   Nonautonomous DNA transposon.
;XX
;AC   .
;XX
;DT   21-APR-1997 (Rel. 2.03, Created)
;DT   21-APR-1997 (Rel. 2.03, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; MER30;
;KW   Repetitive sequence.
;XX
;OS   Vertebrata
;XX
;OC   Vertebrata
;OC   Eukaryota; Metazoa; Chordata; Craniata.
;XX
;RN   [1]
;RA   Jurka,J., Kaplan,J.D., Duncan,H.C., Walichiewicz,J.,
;RA   Milosavljevic,A., Murali,G. and Solus,F.J.
;RT   Identification and characterization of new human medium
;RT   reiteration frequency repeats.
;RL   Nucleic Acids Res 21, 1273-1279 (1993)
;XX
;RN   [2]  (bases 1 to 230)
;RA   Smit,A.F. and Riggs,D.A.
;RT   Tiggers and other DNA transposon fossils in the human genome.
;RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996)
;XX
;CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
;CC   Fragments of MER30 have been found in frog, snake and chicken.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 230 BP; 70 A; 51 C; 55 G; 51 T; 3 other;
MER30
1
;ID   MER31I      DNA   ; MAM   ; 4936 BP
;XX
;DE   MER31I repetitive element - a consensus.
;XX
;AC   .
;XX
;DT   13-JAN-2000 (Rel. 5, Created)
;DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
;XX
;KW   Endogenous Retrovirus; Interspersed Repeat;
;KW   Internal sequence of retrovirus-like element; MER31I;
;KW   MER4 group.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 4936)
;RA   Smit,A.F.
;RT   MER31I.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   MER4-type internal sequence, related to MER4i, MER41i, MER57i,
;CC   and
;CC   MER65i. MER31i is flanked by either MER31 or MER67 LTRs.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 4936 BP; 1503 A; 944 C; 832 G; 1608 T; 49 other;
MER31I
1
;ID   MER52A      DNA   ; HUM   ; 1755 BP
;XX
;DE   Long terminal repeat from MER4I-group retroelement.
;XX
;AC   .
;XX
;DT   30-APR-1998 (Rel. 3.03, Created)
;DT   30-APR-1998 (Rel. 3.03, Last updated, Version 1)
;XX
;KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR;
;KW   MER4I-group; MER52; MER52A; subfamily.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Jurka,J., Kapitonov,V.V., Klonowski,P., Walichiewicz,J.
;RA   and Smit,A.F.
;RT   Identification of new medium reiteration frequency repeats in
;RT   the genomes of primates, rodentia and lagomorpha.
;RL   Genetica 98, 235-247 (1996)
;XX
;RN   [2]
;RA   Smit,A.F.
;RT   MER52A.
;RL   Direct Submission to Repbase Update (1996)
;XX
;RN   [3]  (bases 1 to 1755)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   MER52A.
;RL   Direct Submission to Repbase Update (APR-1998)
;XX
;CC   MER52A is LTR from retroelements related to the MER4I-group [3].
;CC   4 bp target site duplication [3]. Previous orientation [1,2] has
;CC   been changed based on internal sequences and similarity with
;CC   known LTRs. MER52B shares fragment of significant similarity
;CC   with LTR20, LTR25, LTR27, LTR28 and MER61.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 1755 BP; 273 A; 624 C; 579 G; 252 T; 27 other;
MER52A
1
;ID   MER5C       DNA   ; HUM   ; 324 BP
;XX
;DE   Non-autonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   23-AUG-2000 (Rel. 5.07, Created)
;DT   23-AUG-2000 (Rel. 5.07, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; MER5C;
;KW   Repetitive sequence.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 324)
;RA   Jurka,J.
;RT   MER5C.
;RL   Direct Submission to Repbase Update (15-AUG-2000)
;XX
;CC   14 bp terminal inverted repeats and 8 bp target sites.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 324 BP; 112 A; 39 C; 55 G; 116 T; 2 other;
MER5C
1
;ID   MERMITEA    DNA   ; ORY   ; 1710 BP
;XX
;DE   Rice non-autonomous DNA transposon MERMITEA - a consensus.
;XX
;AC   .
;XX
;DT   06-NOV-2002 (Rel. 7.1, Created)
;DT   06-NOV-2002 (Rel. 7.1, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous; MERMITEA;
;KW   target site duplication.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]
;RA   Tarchini,R., Biddle,P., Wineland,R., Tingey,S. and Rafalski,A.
;RT   The complete sequence of 340 kb of DNA around the rice Adh1-adh2
;RT   region reveals interrupted colinearity with maize chromosome 4.
;RL   Plant Cell 12(3), 381-391 (2000)
;XX
;RN   [2]  (bases 1 to 1710)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   MERMITEA: a non-autonomous DNA transposon from Oryza sativa.
;RL   Direct Submission to Repbase Update (26-MAR-2002)
;XX
;CC   8bp target site duplications.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 1710 BP; 243 A; 672 C; 544 G; 250 T; 1 other;
MERMITEA
1
;ID   MERMITEJ    DNA   ; ORY   ; 1498 BP
;XX
;DE   Rice non-autonomous DNA transposon MERMITEJ - a consensus.
;XX
;AC   .
;XX
;DT   06-NOV-2002 (Rel. 7.1, Created)
;DT   06-NOV-2002 (Rel. 7.1, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous; MERMITEJ;
;KW   target site duplication.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]
;RA   Tarchini,R., Biddle,P., Wineland,R., Tingey,S. and Rafalski,A.
;RT   The complete sequence of 340 kb of DNA around the rice Adh1-adh2
;RT   region reveals interrupted colinearity with maize chromosome 4.
;RL   Plant Cell 12(3), 381-391 (2000)
;XX
;RN   [2]  (bases 1 to 1498)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   MERMITEJ: a non-autonomous DNA transposon from Oryza sativa.
;RL   Direct Submission to Repbase Update (25-JUL-2002)
;XX
;CC   8bp target site duplications.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 1498 BP; 222 A; 528 C; 515 G; 233 T; 0 other;
MERMITEJ
1
;ID   MIR         DNA   ; ROD   ; 262 BP
;XX
;DE   Mammalian-wide interspersed repeat (MIR) - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; MB1; MER24; MIR; MIR1;
;KW   Repetitive DNA.
;XX
;OS   Mammalia
;XX
;OC   Mammalia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
;OC   Euteleostomi.
;XX
;RN   [1]
;RA   Degen,J.S. and Davie,W.E.
;RT   Nucleotide sequence for human prothrombin.
;RL   Biochemistry 26, 6165-61677 (1987)
;XX
;RN   [2]
;RA   Donehower,A.L., Slagle,L.B., Wilde,M., Darlington,G.
;RA   and Butel,S.J.
;RT   Identification of a conserved sequence in the noncoding regions
;RT   of many human genes.
;RL   Nucl. Acids Res 17, 699-710 (1989)
;XX
;RN   [3]
;RA   Jurka,J., Zietkiewicz,E. and Labuda,D.
;RT   Ubiquitous mammalian interspersed repeats (MIRs) are molecular
;RT   fossils from the Mesozoic era.
;RL   Nucleic Acids Res 23, 170-175 (1995)
;XX
;RN   [4]
;RA   Smit,A.F. and Riggs,D.A.
;RT   MIRs are classic tRNA-derived SINEs that amplified before the
;RT   mammalian radiation.
;RL   Nucleic Acids Res 23, 98-102 (1995)
;XX
;DR   [4] (Consensus)
;XX
;SQ   Sequence 262 BP; 69 A; 52 C; 61 G; 74 T; 6 other;
MIR
1
;ID   MIR3        DNA   ; HUM   ; 224 BP
;XX
;DE   MIR3 SINE element associated with L3.
;XX
;AC   .
;XX
;DT   07-FEB-2000 (Rel. 5.01, Created)
;DT   14-JUN-2000 (Rel. 5.05, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; L3; MIR; MIR3; tRNA-related.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 1 to 224)
;RA   Jurka,J.
;RT   MIR3.
;RL   Direct Submission to Repbase Update (JAN-2000)
;XX
;CC   This is a SINE element associated with L3 (LINE3) element.
;CC   It shows partial 5' similarity to MIR element, probably due
;CC   to the origin from tRNA. Some elements classified as MIR
;CC   are indeed members of the MIR3 family. MIR3 shows 3' similarity
;CC   to L3 which strongly suggests that L3-like LINE elements were
;CC   involved in their dissemination. Like L3, MIR3 belongs to an
;CC   extinct
;CC   family of repetitive elements. Average similarity to consensus
;CC   MIR3 is ~72%. It is present in non-mammalian vertebrates.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 224 BP; 58 A; 49 C; 51 G; 65 T; 1 other;
MIR3
1
;ID   MLT1A1      DNA   ; ROD   ; 410 BP
;XX
;DE   Mammalian long terminal repeat (MLT1A1 subfamily) - a consensus.
;XX
;AC   .
;XX
;DT   31-MAY-2001 (Rel. 6.04, Created)
;DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1A;
;KW   MLT1A1; MaLR family; retrovirus-like MaLR element.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 410)
;RA   Jurka,J.
;RT   MLT1A1.
;RL   Direct Submission to Repbase Update (OCT-2000)
;XX
;CC   81% similar to MLT1A and ~79% to individual repeats.
;CC   Also similar to the following repeats in the descending order:
;CC   MSTD,
;CC   MSTC, MSTA2, MSTB1, MSTA1, MLT1B, MSTB, MLT1C, MSTA, THE1C,
;CC   MLT1C1,
;CC   THE1B, MLT1D, MLT1E2. All are non-viral LTRs which apparently
;CC   had the same tendency of intermixing similarly to viral LTRs.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 410 BP; 101 A; 93 C; 89 G; 119 T; 8 other;
MLT1A1
1
;ID   MLT1B       DNA   ; ROD   ; 390 BP
;XX
;DE   Mammalian long terminal repeat (MLT1B subfamily) - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MER15; MER18;
;KW   MLT1B; retrovirus-like MaLR element.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]
;RA   Kaplan,J.D., Jurka,J., Solus,F.J. and Duncan,H.C.
;RT   Medium reiteration frequency repetitive sequences in the human
;RT   genome.
;RL   Nucleic Acids Res 17, 4731-4738 (1991)
;XX
;RN   [2]
;RA   Smit,A.F.
;RT   Identification of a new, abundant superfamily of mammalian
;RT   LTR-transposons.
;RL   Nucleic Acids Res 21, 1863-1872 (1993)
;XX
;CC   LTR of MLT1B retrovirus-like MaLR element. 5 bp target site
;CC   dups.
;CC   Average divergence from consensus 16%.
;CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 390 BP; 123 A; 84 C; 92 G; 91 T; 0 other;
MLT1B
1
;ID   MLT1F2      DNA   ; HUM   ; 523 BP
;XX
;DE   MALR long terminal repeat (MLT1F2 subfamily) - a consensus.
;XX
;AC   .
;XX
;DT   28-MAR-2001 (Rel. 6.02, Created)
;DT   28-MAR-2001 (Rel. 6.02, Last updated, Version 1)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1E;
;KW   MLT1F1; MLT1F2; retrovirus-like MaLR element.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 523)
;RA   Jurka,J.
;RT   MLT1F2.
;RL   Direct Submission to Repbase Update (MAR-2001)
;XX
;CC   LTR of MLT1FR retrovirus-like MaLR element. 5 bp target site
;CC   dups.
;CC   Closest homologues are MLT1E and MLT1F1. ~24% divergence from
;CC   the consensus.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 523 BP; 123 A; 128 C; 119 G; 141 T; 12 other;
MLT1F2
1
;ID   MLT1I       DNA   ; ROD   ; 409 BP
;XX
;DE   Mammalian long terminal repeat (MLT1I subfamily) - a consensus.
;XX
;AC   .
;XX
;DT   31-MAY-2001 (Rel. 6.04, Created)
;DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 2)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
;KW   Long terminal repeat of retrovirus-like MaLR element; MLT1I.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]  (bases 98 to 409)
;RA   Jurka,J.
;RT   MLT1I.
;RL   Direct Submission to Repbase Update (1998)
;XX
;RN   [2]  (bases 1 to 409)
;RA   Smit,A.F.
;RT   MLT1I.
;RL   Direct Submission to Repbase Update (FEB-2000)
;XX
;CC   LTR of MLT1I retrovirus-like MaLR element. 5 bp target site
;CC   dups.
;CC   75-80% similarity over pos 1-210, 280-409 to MLT1H and
;CC   MLT1J(1,2).
;CC   Average divergence from consensus 26%.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 409 BP; 87 A; 97 C; 109 G; 111 T; 5 other;
MLT1I
1
;ID   MLT1J       DNA   ; ROD   ; 516 BP
;XX
;DE   Long terminal repeat (MLT1J subfamily) - a consensus.
;XX
;AC   .
;XX
;DT   14-MAY-1998 (Rel. 3.04, Created)
;DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 3)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
;KW   Long terminal repeat of retrovirus-like MaLR element; MLT1J.
;XX
;OS   Eutheria
;XX
;OC   Eutheria
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia.
;XX
;RN   [1]  (bases 1 to 516)
;RA   Jurka,J.
;RT   MLT1J.
;RL   Direct Submission to Repbase Update (05-MAY-1998)
;XX
;CC   3'-similar to MLT1I and possibly to MLT1H around positions
;CC   89-201.
;CC   LTR of MLT1J retrovirus-like MaLR element. 5 bp target site
;CC   dups.
;CC   Average divergence from consensus 27%.
;CC   Pos 132-516 77% similar to MLT1L, pos 102-200 82% similar to
;CC   MLT1I.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 516 BP; 130 A; 128 C; 116 G; 139 T; 3 other;
MLT1J
1
;ID   MSTA        DNA   ; HUM   ; 428 BP
;XX
;DE   Long terminal repeat (MSTA subfamily) - a consensus.
;XX
;AC   .
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MSTA;
;KW   MaLR family; MstII; retrovirus-like MaLR element.
;XX
;OS   Primates
;XX
;OC   Primates
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   Identification of a new, abundant superfamily of mammalian
;RT   LTR-transposons.
;RL   Nucleic Acids Res 21(8), 1863-1872 (1993)
;XX
;CC   LTR of MSTB retrovirus-like MaLR element. 5 bp target site dups.
;CC   Average divergence from consensus 12%. Intermittant subfamily
;CC   between THE1C and MSTB; 85% similar to MSTB over the entire
;CC   length.
;CC   See MSTB for full references.
;XX
;SQ   Sequence 428 BP; 83 A; 112 C; 105 G; 128 T; 0 other;
MSTA
1
;ID   MSTD        DNA   ; HUM   ; 396 BP
;XX
;DE   Primate MSTD repetitive element - a consensus.
;XX
;AC   .
;XX
;DT   07-FEB-2000 (Rel. 5.01, Created)
;DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 2)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
;KW   Long terminal repeat o; MSTD; MaLR family.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   Structure and evolution of mammalian interspersed repeats.
;RL   PhD dissertation, Univ Southern California, 1995
;XX
;RN   [2]
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (FEB-2000)
;XX
;CC   LTR of MSTD retrovirus-like MaLR element. 5 bp target site dups.
;CC   Average divergence from consensus 18%. Intermittant subfamily
;CC   between MSTC and MLT1A; 85% and 92% similar to MSTC over first
;CC   and
;CC   last 150 bp, respectively, and 79% full-length similarity to
;CC   MLTA1.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 396 BP; 91 A; 95 C; 96 G; 110 T; 4 other;
MSTD
1
;ID   MTD         DNA   ; ROD   ; 418 BP
;XX
;DE   Rodent MTd MaLR-LTR - a consensus.
;XX
;AC   .
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MTd; MaLR-LTR;
;KW   Repetitive sequence.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   Identification of a new, abundant superfamily of mammalian
;RT   LTR-transposons.
;RL   Nucleic Acids Res 21, 1863-1872 (1993)
;XX
;CC   region 211-240 to be annotated.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 418 BP; 99 A; 98 C; 103 G; 108 T; 10 other;
MTD
1
;ID   MUDR        DNA   ; PLN   ; 4942 BP
;XX
;DE   Zea mays transposon MuDR mudrA and mudrB genes, complete cds.
;XX
;AC   M76978
;XX
;DT   15-JUN-1999 (Rel. 4.05, Created)
;DT   29-JUL-2005 (Rel. 4.05, Last updated, Version 2)
;XX
;KW   MuDR; DNA transposon; Interspersed Repeat;
;KW   Mu autonomous DNA transposon; TIR; transposase.
;XX
;OS   Zea mays
;XX
;OC   Zea mays
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea.
;XX
;RN   [1]  (bases 1 to 4942)
;RA   Hershberger,J.R., Warren,A.C. and Walbot,V.
;RT   Mutator activity in maize correlates with the presence and
;RT   expression of the Mu transposable element Mu9.
;RL   Proc. Natl. Acad. Sci. U.S.A 88(22), 10198-10202 (1991)
;XX
;RN   [2]  (bases 1 to 4942)
;RA   Hershberger,J.R.
;RT   MUDR.
;RL   Direct Submission to Genbank (15-NOV-1991)R. Jane Hershberger,
;RL   Dept. of Biological Sciences, Stanford University, Stanford, CA
;RL   94305-5020, USA
;XX
;CC   It has 215 bp-long terminal inverted repeat and it encodes two
;CC   proteins in both orientations:
;CC   mRNA1 join(169..332,429..545,691..2750,2830..>3145)
;CC   /gene="mudrA"
;CC   CDS1 join(450..545,691..2750,2830..3145)
;CC   /gene="mudrA"
;CC   /codon_start=1
;CC   /protein_id="AAA21566.1"
;CC   /db_xref="PID:g540581"
;CC   db_xref="GI:540581"
;CC   mRNA2 complement(join(<3782..4225,4298..4511,4629..4780))
;CC   /gene="mudrB"
;CC   CDS2 complement(join(3782..4225,4298..4477))
;CC   /gene="mudrB"
;CC   /codon_start=1
;CC   /protein_id="AAA21567.1"
;CC   /db_xref="PID:g540582"
;CC   /db_xref="GI:540582".
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           join(450..545,691..2750,2830..3145)
;FT                 /product="AAA21566.1"
;FT                 /note="mudrA"
;FT                 /translation="MDLTPSFNSLDSNGIPNSPDVDPALGETGGSEGLQK
;FT                 IDGESQLDWDSIIVSDVLDDEGRVQVPTENEIYFNLGLNKGDEAANNRFS
;FT                 GSGTNCHAQGSLDTDNEDHHADQPCQDYIPDEKRVVYNRMNPSMQPGCLF
;FT                 PNMKEFRIAMRQYAIKHEFELGIEVTSTTRYVGYCKGGDCPWRIYAREEK
;FT                 KGLPTIVVAVLDDVHTCTSSGRRRTTTPTCGWVAFHAKPLLMKKPQMGAK
;FT                 ELQQTLQTTHNVTIGYDTVWKGKEKALRELYGSWEESFQLLYSWKEAVIA
;FT                 VMPDSVIEIDVILEDGKYYFSRFFCAFGPCISGFRDGCRPYLSVDSTALN
;FT                 GRWNGHLASATGVDGHNWMYPVCFGFFQAETVDNWIWFMKQLKKVVGDMT
;FT                 LLAICSDAQKGLMHAVNEVFPYAERRECFRHLMGNYVKHHAGSEHMYPAA
;FT                 RAYRRDVFEHHVSKVRNVHKIAEYLDQHHKFLWYRSGFNKDIKCDYITNN
;FT                 MAEVYNNWVKDHKDLPVCDLAEKIREMTMELFHRRRRIGHKLHGIILPSV
;FT                 LAILKARTRGLGHLSIVKCDNYMAEVRDSTNCMTKHVVNAELKQCSCEEW
;FT                 QHTGKPCQHGLALIIAQDSRDVGMENFVDDYYSTERFKIAYSRRVEPIGD
;FT                 RSFWPSVDFASGVFAPIARRGLGRQRKNRIKSCLEGGSARNKSTNENEKT
;FT                 KKRLKRQYTCPNCGELGHRQSSYKCPLNGTKKRKRKPRINTTKNWIPKEL
;FT                 RTSSQNVPVQPDVAEEVTEQELEDPQPETEQLGLALFQPLGAQITEQEAD
;FT                 EPAEQAPPASPPPTRKWLVKKITPKKRLRISAQQKQY*"
;FT   CDS           join(4477..4298,4225..3782)
;FT                 /product="AAA21567.1"
;FT                 /note="mudrB"
;FT                 /translation="MDCPPSKVVADAVEAARAAAVAASEARCAVFVAEKE
;FT                 AKAAVQFAAIAVEKVEAVKASSNVDLVDFKYHVSIKNSLRYAIQEMRRQS
;FT                 KLLHSVQKLCSTIPEVQGGKIGKVRGFLEHVCKELDKTSSICEEDLETKN
;FT                 PTWDLYDNPSVDDEHPLDDDELGDGYSTEDPELWEMVFDDFKWEEIKANV
;FT                 SFEEHYRVINYRFEEINDRNM*"
;XX
;DR   Positions       1    4942  Accession No        M76978 GenBank
;XX
;SQ   Sequence 4942 BP; 1452 A; 1059 C; 1137 G; 1294 T; 0 other;
MUDR
1
;ID   MUSID3      DNA   ; ROD   ; 79 BP
;XX
;DE   SINE element, ID family.
;XX
;AC   .
;XX
;DT   22-APR-1997 (Rel. 2.03, Created)
;DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
;XX
;KW   SINE2; SINE; Interspersed Repeat; ID family; MUSID3.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   Structure and evolution of mammalian interspersed repeats.
;RL   Ph.D. thesis (USC 1995)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 79 BP; 15 A; 20 C; 27 G; 14 T; 3 other;
MUSID3
1
;ID   OOREP1      DNA   ; MAM   ; 1579 BP
;XX
;DE   O.orca highly repetitive element DNA.
;XX
;AC   M36451
;XX
;DT   22-1995 (Rel. 1.11, Created)
;DT   22-1995 (Rel. 1.11, Last updated, Version 1)
;XX
;KW   OOREP1; Repetitive element.
;XX
;OS   Orcinus orca
;XX
;OC   Orcinus orca
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti;
;OC   Delphinidae; Orcinus.
;XX
;RN   [1]  (bases 1 to 1579)
;RA   Widegren,B., Arnason,U. and Akusjaervi,G.
;RT   Characteristics of a conserved 1,579-bp highly repetitive
;RT   component in the killer whale, Orcinus orca.
;RL   Mol. Biol. Evol 2, 411-419 (1985)
;XX
;DR   Positions       1    1579  Accession No        M36451 GenBank
;XX
;SQ   Sequence 1579 BP; 368 A; 358 C; 333 G; 520 T; 0 other;
OOREP1
1
;ID   ORR1A       DNA   ; ROD   ; 327 BP
;XX
;DE   Rodent ORR1a MaLR-LTR - a consensus.
;XX
;AC   .
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MaLR-LTR;
;KW   ORR1a; Repetitive sequence.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   Identification of a new, abundant superfamily of mammalian
;RT   LTR-transposons.
;RL   Nucleic Acids Res 21, 1863-1872 (1993)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 327 BP; 66 A; 78 C; 85 G; 93 T; 5 other;
ORR1A
1
;ID   ORR1D       DNA   ; ROD   ; 367 BP
;XX
;DE   Rodent ORR1d MaLR-LTR - a consensus.
;XX
;AC   .
;XX
;DT   28-SEP-1995 (Rel. 1.08, Created)
;DT   17-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MaLR-LTR;
;KW   ORR1d; Repetitive sequence.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Smit,A.F.
;RT   Identification of a new, abundant superfamily of mammalian
;RT   LTR-transposons.
;RL   Nucleic Acids Res 21, 1863-1872 (1993)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 367 BP; 77 A; 81 C; 91 G; 100 T; 18 other;
ORR1D
1
;ID   OSHOOTER    DNA   ; ORY   ; 11544 BP
;XX
;DE   EnSpm-type DNA transposon from rice.
;XX
;AC   AE017083
;XX
;DT   25-AUG-2005 (Rel. 10.08, Created)
;DT   30-AUG-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   EnSpm; DNA transposon; Interspersed Repeat.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 11544)
;RA   Consortium,.
;RT   In-depth view of structure, activity, and evolution of rice
;RT   chromosome 10.
;RL   Science 300(5625), 1566-1569 (2003)
;XX
;RN   [2]  (bases 1 to 11544)
;RA   Jurka,J.
;RT   OSHOOTER: EnSpm-type DNA transposon from rice.
;RL   Repbase Reports 5(8), 205-205 (2005)
;XX
;CC   The protein similarity to "TPN2-like transposon protein" was
;CC   identified in Genbank annotation, however no transposon was
;CC   annotated. This is a relatively young element with multiple
;CC   copies 98% identical over the entire length.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           4447..7119
;FT                 /product="OSHOOTER_1p"
;FT                 /translation="MAPSKAWMGLVDDRLNHEYLEGVEKFIDYAFSKLDG
;FT                 VQVIRCPCIKCCNTYSLPHHIVSSHLKAYGILRSYTFWYHHGEVLAEQEN
;FT                 DIEVDEYDSQEFNGEGYNGMQDLMEDLFPQCNTPGGDEATHESTDQGPEE
;FT                 EPNTDAAKFYALLDKYNQPLYEGSRISKLSALVNLLHVKNLGKWSNKSFT
;FT                 ALLELLRKDFLPHDSTLPNSYYEAKKTIRELGLSYIKIDACKNDCMLYWK
;FT                 EDIDAESCKVCGSSRWKEKHTREIKHSSAGKKIPHKTMRYFPIKPRLQRL
;FT                 FMCRKTAAYAKWHKECRVDGGVMRHPADSKAWKEFDKIHSSFASEPRNVR
;FT                 LCLASDGFQPFANMRTSYSIWPVFLVPLNLPPWMCIKQQNVMLSMLLPGP
;FT                 DGPGDAIDVYLQPLIEELIELWEDGVDTYDSSTKTNFKLRAALLWTVHDF
;FT                 PAYGNISGHSTKGKLACPVCHKETNSMWLKKGQKFCYMGHRCFLRRSHRW
;FT                 RNDRTSFDGTKESRGPPMELSGDDVLKQVQDLQGIILSKDMSKKTKVSRS
;FT                 DRGDNWKKRSIFFELPYFKTLLLRHNLDVMHIEKNICDSIIGTLMNVKGK
;FT                 TKDNINTRSDLKLMNLRPDLHPVDDGGKVVLPPAPYTLSPDQKKALLSFF
;FT                 KELKVPDGFSSNISRCVNMKERKMSGLKSHDCHVILNHILPLALRGLLPE
;FT                 NIYEPLVELSQFFKKLNSKALSVEQLEEMDAQIPVILCKLEKEFPPSFFD
;FT                 VMMHLPVHLAREALIGGPTMYRWMYLFERQIHYLKSLVRNMARPEGSIAE
;FT                 GYIADEFMTLSSRYLDDVETKHNRPGRIHDTSIGNKFNLSIFSCAGRPIG
;FT                 SRKTRDLDMLESEQAHIYILRNCDEVQAYIRYPLIKMAFIYVMFLTIHFT
;FT                 SLCNF"
;FT   CDS           7352..7894
;FT                 /product="OSHOOTER_2p"
;FT                 /translation="MEDLLSLSRGPLKNITCFTGYDMNGFRYRTERRDSR
;FT                 RCTQNSGVMVLGDDVEYYGVLTEILEIQYLGGRRVPLFRCNWVDVFNKDR
;FT                 GIRIDKYGLTSVNLQRLLQTDEPFVLASQAAQVFFVKDNQIKGWHLIEKM
;FT                 QPRDTYQVPAGESDDESTEVEQDDGNEEDILDDSPSASLKRKRKP"
;XX
;DR   Positions  251962  263505  Accession No      AE017083 Genbank
;XX
;SQ   Sequence 11544 BP; 3615 A; 2025 C; 2326 G; 3578 T; 0 other;
OSHOOTER
1
;ID   OSTE21      DNA   ; ORY   ; 1271 BP
;XX
;DE   Rice putative non-autonomous DNA transposon OSTE21 - a
;DE   consensus.
;XX
;AC   .
;XX
;DT   11-NOV-2002 (Rel. 7.1, Created)
;DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous; OSTE21.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 1271)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   OSTE21: a putative non-autonomous DNA transposon from Oryza
;RT   sativa.
;RL   Repbase Reports 2(10), 16-16 (2002)
;XX
;CC   Imperfect palindromic sequence.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1271 BP; 223 A; 408 C; 401 G; 239 T; 0 other;
OSTE21
1
;ID   QUASIMODO_I DNA   ; DRO   ; 6060 BP
;XX
;DE   QUASIMODO_I is an internal portion of QUASIMODO retrovirus-like
;DE   element - a consensus sequence.
;XX
;AC   .
;XX
;DT   09-JUN-1999 (Rel. 4.05, Created)
;DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; QUASIMODO_I;
;KW   QUASIMODO_LTR; Retrovirus; env-like; gag-like; pol.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 6060)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   QUASIMODO_I.
;RL   Direct Submission to Repbase Update (JUN-1999)
;XX
;CC   LTR of QUASIMODO retrotransposon is listed in Repbase Update as
;CC   QUASIMODO_LTR. It can be an active retrovirus since some of
;CC   its copies are identical.
;CC   QUASIMODO has strong target-site specificity: it generates
;CC   duplication of the TATAT target-site upon its integration
;CC   into genome.
;CC   QUASIMODO_I internal sequence encodes gag (position 406-1413),
;CC   pol (position 1344-4613) and env-like (position 4477-6033)
;CC   polyproteins.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 6060 BP; 2532 A; 1030 C; 885 G; 1613 T; 0 other;
QUASIMODO_I
1
;ID   RETROSAT2_I DNA   ; ORY   ; 6208 BP
;XX
;DE   Oryza sativa gypsy-type retrotransposon RETROSAT2_I, internal
;DE   region.
;XX
;AC   AF111709
;XX
;DT   08-NOV-2002 (Rel. 7.1, Created)
;DT   28-JUL-2005 (Rel. 7.1, Last updated, Version 2)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   Gypsy superfamily; RETROSAT2_I; internal region.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 6208)
;RA   Llaca,V., Lou,A., Young,S. and Messing,J.
;RT   Direct submission.
;RL   Direct Submission to Genbank (05-1998)
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           1633..6195
;FT                 /product="RETROSAT2_I_1p"
;FT                 /translation="MVYTRTGSRATGEGSNGEERADGVHPNSDSGNVPPP
;FT                 LPENPTLAQVMAHQTQMMAAMMQQMQQQHQQMHQRMMQHVEQQHQQFGPP
;FT                 PPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF
;FT                 ATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQKKR
;FT                 EFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTN
;FT                 QLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAPQGSHQRPRFTP
;FT                 GQQGGPTTMIVRQHRPFNSSNFHQGSSGSQNHHGSQPNRGAAPRPPMAPA
;FT                 QSGQPAQAKKETGVKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHA
;FT                 SAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEE
;FT                 LRTPMRVHTPGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGM
;FT                 DWLTKFKGVIDCANRTVTLTNEKGETVVHKSLVSPKQGASLNQIEAEIPV
;FT                 DTMEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIY
;FT                 KRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRM
;FT                 CVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIRE
;FT                 EDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVF
;FT                 IDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHV
;FT                 ITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIAR
;FT                 PMTQLLKKDEKFKWTTECDKSFEELKKKLVSAPVLILPDPTKDFQVYCDA
;FT                 SRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY
;FT                 LIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKAN
;FT                 VVADALSRKNYCTALCVEGMCEELRQEFEHLNVGIVEHGFVAALEARPTL
;FT                 VDQVRAAQVNDPEIAELKKNMRVGKARDFLEDEHGTIWMGERLCVPDDKE
;FT                 LKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVC
;FT                 QRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVD
;FT                 RLTKVAHFIPVQTTYTGKRLAELYLARIMCLHGVPRKIVSDRGSQFTSKF
;FT                 WQKLQEEMGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGAWDK
;FT                 SLPYAEFSYNNSYQASLQMAPFKALYGRKCRTPLFWDQTGERQLFGTEVL
;FT                 AEAEEKVRIIRERLRIAQSRQKSYADNRRRELTFEAGDYVYLRVTPLRGV
;FT                 HRFQTKGKLAPRFVGPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLKK
;FT                 CLRVPEEQADSEHIDIQEDLTYVEKPVRILDTSERRTRNKVTRFCRVQWS
;FT                 HHSEEEATWEREDELKAAHPHLFTSSSESRGRDSV"
;XX
;DR   Positions   29183   35390  Accession No      AF111709 Genbank
;XX
;SQ   Sequence 6208 BP; 1637 A; 1549 C; 1613 G; 1409 T; 0 other;
RETROSAT2_I
1
;ID   REX1_FURC   DNA   ; FUG   ; 3401 BP
;XX
;DE   Non-LTR retrotransposon; CR1 superfamily; REX1/Babar family;
;DE   Rex1_FurC.
;XX
;AC   .
;XX
;DT   08-FEB-2002 (Rel. 7.01, Created)
;DT   08-FEB-2002 (Rel. 7.01, Last updated, Version 1)
;XX
;KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
;KW   CR1 superfamily; REX1/Babar family; Rex1_FurC.
;XX
;OS   Takifugu rubripes
;XX
;OC   Takifugu rubripes
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
;OC   Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha;
;OC   Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu.
;XX
;RN   [1]
;RA   Volff,N.J., Korting,C. and Schartl,M.
;RT   Multiple lineages of the non-LTR retrotransposon Rex1 with
;RT   varying success in invading fish genomes.
;RL   Mol Biol Evol 17(11), 1673-1684 (2000)
;XX
;RN   [2]
;RA   Smit,A.F.
;RT   Initial survey of interspersed repeats in Takifugu rubripes.
;RL   Direct Submission to Repbase Update (28-NOV-2001)
;XX
;CC   Described by [1] but no sequences were deposited to GenBank or
;CC   RepBase Update. Reference [1] mentions 3 more Fugu REX1
;CC   families.
;CC   The consensus [2] contains one full ORF from bp 174-3158 and may
;CC   have an incomplete 5' end.
;CC   Average substitution level of copies is 5%, but this partially
;CC   reflects differences between subfamilies (mostly in the 3' UTR).
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 3401 BP; 864 A; 870 C; 823 G; 840 T; 4 other;
REX1_FURC
1
;ID   RLTR15B_MM  DNA   ; ROD   ; 824 BP
;XX
;DE   Long Terminal Repeat from an endogenous retrovirus - a
;DE   consensus.
;XX
;AC   .
;XX
;DT   02-MAY-2002 (Rel. 7.04, Created)
;DT   02-MAY-2002 (Rel. 7.04, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; RLTR15B_MM.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 824)
;RA   Jurka,J.
;RT   RLTR15B_MM: putative LTR from mouse.
;RL   Repbase Reports 2(4), 25-25 (2002)
;XX
;CC   See commentary to RLTR15A_MM.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 824 BP; 244 A; 132 C; 215 G; 228 T; 5 other;
RLTR15B_MM
1
;ID   RLTR9A      DNA   ; ROD   ; 363 BP
;XX
;DE   Long terminal repeat of endogenous retrovirus.
;XX
;AC   .
;XX
;DT   26-SEP-1997 (Rel. 2.08, Created)
;DT   26-SEP-1997 (Rel. 2.08, Last updated, Version 1)
;XX
;KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
;KW   Putative retroviral long terminal repeat RLTR9A; RLTR9A.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 363)
;RA   Smit,A.F.
;RT   RLTR9A.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   Putative retroviral LTR. Bp 239-324 78% similar to bp 180-268
;CC   of the ETn-LTR. 6 bp duplication sites.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 363 BP; 72 A; 111 C; 85 G; 87 T; 8 other;
RLTR9A
1
;ID   RMER12      DNA   ; ROD   ; 1315 BP
;XX
;DE   Interspersed repeat.
;XX
;AC   .
;XX
;DT   26-SEP-1997 (Rel. 2.08, Created)
;DT   26-SEP-1997 (Rel. 2.08, Last updated, Version 1)
;XX
;KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; RMER12.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 1315)
;RA   Smit,A.F.
;RT   RMER12.
;RL   Direct Submission to Repbase Update (1997)
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1315 BP; 353 A; 267 C; 247 G; 420 T; 28 other;
RMER12
1
;ID   RMER17B     DNA   ; ROD   ; 928 BP
;XX
;DE   Long terminal repeat of retrovirus-like element.
;XX
;AC   .
;XX
;DT   26-SEP-1997 (Rel. 2.08, Created)
;DT   26-SEP-1997 (Rel. 2.08, Last updated, Version 1)
;XX
;KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
;KW   Putative long terminal repeat; RMER17B.
;XX
;OS   Mus musculus
;XX
;OC   Mus musculus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
;OC   Mus.
;XX
;RN   [1]  (bases 1 to 928)
;RA   Smit,A.F.
;RT   RMER17B.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   Incomplete consensus. May contain part of internal sequence.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 928 BP; 173 A; 331 C; 197 G; 216 T; 11 other;
RMER17B
1
;ID   ROO_I       DNA   ; DRO   ; 8256 BP
;XX
;DE   ROO_I is an internal portion of endogenous retrovirus ROO - a
;DE   consensus sequence.
;XX
;AC   .
;XX
;DT   16-JUL-1999 (Rel. 4.06, Created)
;DT   16-JUL-1999 (Rel. 4.06, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; B104;
;KW   BCDPR superfamily; endogenous retrovirus; ORF1; ROO_I; ROO_LTR;
;KW   env; gag; pol.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]
;RA   Scherer,G., Tschudi,C., Perera,J., Delius,H. and Pirrotta,V.
;RT   B104, a new dispersed repeated gene family in Drosophila
;RT   melanogaster and its analogies with retroviruses.
;RL   J. Mol. Biol 157(3), 435-451 (1982)
;XX
;RN   [2]  (bases 1 to 8256)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   ROO_I.
;RL   Direct Submission to Repbase Update (JUL-1999)
;XX
;CC   ROO belongs to the BCDPR superfamily of retroviruses.
;CC   It's one of the most ambiguous retroviruses in the drosophila
;CC   and it has 50-100 proviral copies per haploid genome.
;CC   Gag, RT, endonuclease and env are encoded by one long
;CC   ORF (position 855-7934; 2360 aa-long polyprotein).
;CC   ROO generates 5 bp-long duplication of targets sites.
;CC   It's an active mobile element.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 8256 BP; 3221 A; 1271 C; 1543 G; 2221 T; 0 other;
ROO_I
1
;ID   ROVER_DM    DNA   ; DRO   ; 7318 BP
;XX
;DE   Drosophila melanogaster LTR-retrotransposon rover, complete
;DE   sequence.
;XX
;AC   AF492764
;XX
;DT   13-SEP-2004 (Rel. 9.08, Created)
;DT   29-JUN-2005 (Rel. 9.08, Last updated, Version 2)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; ROVER_DM;
;KW   env domain; gag domain; pol domain.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 7318)
;RA   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
;RA   Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
;RA   Rubin,G.M., Ashburner,M. and Celniker,S.E.
;RT   The transposable elements of the Drosophila melanogaster
;RT   euchromatin: a genomics perspective.
;RL   Genome Biol 3(12),  (2002)
;XX
;DR   Positions       1    7318  Accession No      AF492764 Genbank
;XX
;SQ   Sequence 7318 BP; 2989 A; 1603 C; 975 G; 1751 T; 0 other;
ROVER_DM
1
;ID   RSINE1      DNA   ; ROD   ; 177 BP
;XX
;DE   SINE element; RSINE1 family - a consensus.
;XX
;AC   .
;XX
;DT   22-APR-1997 (Rel. 2.03, Created)
;DT   26-SEP-1997 (Rel. 2.08, Last updated, Version 2)
;XX
;KW   SINE1; SINE; Interspersed Repeat; ID; RSINE1; RSINE1 family;
;KW   RSINE2; retroposon.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]  (bases 1 to 177)
;RA   Kapitonov,V.V., Chopra,V. and Jurka,J.
;RT   RSINE1.
;RL   Direct Submission to Repbase Update (1997)
;XX
;RN   [2]  (bases 1 to 177)
;RA   Smit,A.F.
;RT   RSINE1.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   ID-like SINE element.
;XX
;SQ   Sequence 177 BP; 42 A; 59 C; 50 G; 26 T; 0 other;
RSINE1
1
;ID   RSINE2      DNA   ; ROD   ; 334 BP
;XX
;DE   SINE element; RSINE2 family - a consensus.
;XX
;AC   .
;XX
;DT   22-APR-1997 (Rel. 2.03, Created)
;DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
;XX
;KW   SINE2; SINE; Interspersed Repeat; RSINE2; RSINE2 family;
;KW   retroposon.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Lee,I., Westaway,D., Smit,A.F., Cooper,C., Yao,H., Prusiner,B.S.
;RA   and Hood,L.
;RT   Complete Structure and Organization of Three Mammalian Prion
;RT   Chromosomal Regions.
;RL   Unpublished (1996)
;XX
;RN   [2]
;RA   Kapitonov,V.V., Chopra,V. and Jurka,J.
;RT   RSINE2.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   RSINE2 is composed of two retroposons, RSINE1 and a B1-like
;CC   element [2].
;CC   Putatively [2], RSINE2 sequences have been retroposed in
;CC   multiple
;CC   copies after insertion of the B1-like repeat in the RSINE1
;CC   repeat.
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 334 BP; 97 A; 88 C; 92 G; 47 T; 10 other;
RSINE2
1
;ID   RSINE2A     DNA   ; ROD   ; 303 BP
;XX
;DE   SINE element RSINE2 subfamily - a consensus.
;XX
;AC   .
;XX
;DT   22-APR-1997 (Rel. 2.03, Created)
;DT   01-JUN-2005 (Rel. 10.05, Last updated, Version 3)
;XX
;KW   SINE2; SINE; Interspersed Repeat; B4; RSINE2 family; RSINE2A;
;KW   retroposon; subfamily RSINE2A; SINE1.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]  (bases 1 to 303)
;RA   Lee,I.Y., Westaway,D., Smit,A.F., Wang,K., Seto,J., Chen,L.,
;RA   Acharya,C., Ankener,M., Baskin,D., Cooper,C., Yao,H.,
;RA   Prusiner,S.B. and Hood,L.E.
;RT   Complete genomic sequence and analysis of the prion protein gene
;RT   region from three mammalian species.
;RL   Genome Res 8(10), 1022-1037 (1998)
;XX
;RN   [2]  (bases 1 to 303)
;RA   Jurka,J.
;RT   Consensus sequence of RSINE2A (B4).
;RL   Direct Submission to Repbase Update (01-JUN-2005)
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 303 BP; 84 A; 77 C; 87 G; 55 T; 0 other;
RSINE2A
1
;ID   SC-4        DNA   ; ORY   ; 5216 BP
;XX
;DE   Rice copia-type retrotransposon SC-4.
;XX
;AC   .
;XX
;DT   04-AUG-2002 (Rel. 7.07, Created)
;DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat;
;KW   COPIA superfamily; SC-3; SC-4.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 5216)
;RA   Jiang,N. and Wessler,R.S.
;RT   SC-4: a copia-type retrotransposon from Oryza sativa.
;RL   Repbase Reports 2(7), 36-36 (2002)
;XX
;CC   SC-4 is a copia-type retrotransposon. It has 419bp LTRs.
;CC   Internal region is related to SC-3.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 5216 BP; 1142 A; 1295 C; 1601 G; 1178 T; 0 other;
SC-4
1
;ID   SINEB1_MU   DNA   ; ROD   ; 133 BP
;XX
;DE   SINE element, B1 family from Meriones unguiculatus - consensus.
;XX
;AC   .
;XX
;DT   06-FEB-2003 (Rel. 8.01, Created)
;DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; B1 family; SINE element; SINEB1_MU.
;XX
;OS   Meriones unguiculatus
;XX
;OC   Meriones unguiculatus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Gerbillinae;
;OC   Meriones.
;XX
;RN   [1]  (bases 1 to 133)
;RA   Honkaniemi,J.
;RT   SINEB1_MU: B1 elements from Mongolian gerbil.
;RL   Repbase Reports 2(12), 26-26 (2002)
;XX
;CC   Cloned from ischemic gerbil hippocampus by 3'- and 5'-RACE.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 133 BP; 31 A; 37 C; 41 G; 24 T; 0 other;
SINEB1_MU
1
;ID   SINEB2_MU   DNA   ; ROD   ; 97 BP
;XX
;DE   SINE element, B2 family from Meriones unguiculatus - consensus.
;XX
;AC   .
;XX
;DT   06-FEB-2003 (Rel. 8.01, Created)
;DT   06-FEB-2003 (Rel. 8.01, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; B2 family; SINE element; SINEB2_MU.
;XX
;OS   Meriones unguiculatus
;XX
;OC   Meriones unguiculatus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Gerbillinae;
;OC   Meriones.
;XX
;RN   [1]  (bases 1 to 97)
;RA   Honkaniemi,J.
;RT   SINEB2_MU: B2 elements from Mongolian gerbil.
;RL   Repbase Reports 2(12), 27-27 (2002)
;XX
;CC   Cloned from ischemic gerbil hippocampus by 3'- and 5'-RACE.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 97 BP; 24 A; 26 C; 26 G; 21 T; 0 other;
SINEB2_MU
1
;ID   SINEC1A_CF  DNA   ; MAM   ; 168 BP
;XX
;DE   Dog SINE element SINEC1A_CF.
;XX
;AC   .
;XX
;DT   09-2004 (Rel. 9.11, Created)
;DT   09-2004 (Rel. 9.11, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; SINE element; SINEC1A_CF.
;XX
;OS   Canis familiaris
;XX
;OC   Canis familiaris
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
;XX
;RN   [1]  (bases 1 to 168)
;RA   Jurka,J. and Gentles,A.
;RT   Dog SINE element SINEC1A_CF.
;RL   Direct Submission to Repbase Update (2004)
;XX
;CC   Average similarity to consensus 90%.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 168 BP; 20 A; 56 C; 44 G; 48 T; 0 other;
SINEC1A_CF
1
;ID   SINEC1C1_CF DNA   ; MAM   ; 159 BP
;XX
;DE   Dog SINE element SINEC1C1_CF.
;XX
;AC   .
;XX
;DT   09-2004 (Rel. 9.11, Created)
;DT   09-2004 (Rel. 9.11, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; SINE element; SINEC1C1_CF.
;XX
;OS   Canis familiaris
;XX
;OC   Canis familiaris
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
;XX
;RN   [1]  (bases 1 to 159)
;RA   Jurka,J. and Gentles,A.
;RT   Dog SINE element SINEC1C1_CF.
;RL   Direct Submission to Repbase Update (2004)
;XX
;CC   Average similarity to consensus 87%.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 159 BP; 19 A; 48 C; 45 G; 47 T; 0 other;
SINEC1C1_CF
1
;ID   SINEC1C2_CF DNA   ; MAM   ; 158 BP
;XX
;DE   Dog SINE element SINEC1C2_CF.
;XX
;AC   .
;XX
;DT   09-2004 (Rel. 9.11, Created)
;DT   09-2004 (Rel. 9.11, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; SINE element; SINEC1C2_CF.
;XX
;OS   Canis familiaris
;XX
;OC   Canis familiaris
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
;XX
;RN   [1]  (bases 1 to 158)
;RA   Jurka,J. and Gentles,A.
;RT   Dog SINE element SINEC1C2_CF.
;RL   Direct Submission to Repbase Update (2004)
;XX
;CC   Average similarity to consensus 86%.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 158 BP; 19 A; 49 C; 44 G; 46 T; 0 other;
SINEC1C2_CF
1
;ID   SINEC1D_CF  DNA   ; MAM   ; 195 BP
;XX
;DE   Old dog SINE element SINEC1D_CF.
;XX
;AC   .
;XX
;DT   09-2004 (Rel. 9.11, Created)
;DT   09-2004 (Rel. 9.11, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; SINE element; SINEC1D_CF.
;XX
;OS   Canis familiaris
;XX
;OC   Canis familiaris
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
;XX
;RN   [1]  (bases 1 to 195)
;RA   Jurka,J. and Gentles,A.
;RT   Old dog SINE element SINEC1D_CF.
;RL   Direct Submission to Repbase Update (2004)
;XX
;CC   This dog SINE element has average similarity to consensus of
;CC   79%. In addition, it appears to as closely related to Phoca
;CC   vitulina (harbor seal) SINEC_PV, as to other dog SINE
;CC   elements.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 195 BP; 41 A; 58 C; 44 G; 52 T; 0 other;
SINEC1D_CF
1
;ID   SINEC1_CF   DNA   ; MAM   ; 144 BP
;XX
;DE   Dog SINE element SINEC1_CF.
;XX
;AC   .
;XX
;DT   24-MAY-2004 (Rel. 9.04, Created)
;DT   09-2004 (Rel. 9.11, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; SINE element; SINEC1_CF.
;XX
;OS   Canis familiaris
;XX
;OC   Canis familiaris
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
;XX
;RN   [1]  (bases 1 to 144)
;RA   Jurka,J. and Gentles,A.
;RT   Dog SINE element SINEC1_CF.
;RL   Direct Submission to Repbase Update (2004)
;XX
;CC   Average similarity to consensus 91%. Supersedes previous
;CC   SINEC1_CF.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 144 BP; 14 A; 53 C; 41 G; 36 T; 0 other;
SINEC1_CF
1
;ID   SINEC2A1_CF DNA   ; MAM   ; 196 BP
;XX
;DE   Young dog SINE element SINEC2A1_CF.
;XX
;AC   .
;XX
;DT   09-2004 (Rel. 9.11, Created)
;DT   09-2004 (Rel. 9.11, Last updated, Version 1)
;XX
;KW   SINE; Interspersed Repeat; SINE element; SINEC2A1_CF.
;XX
;OS   Canis familiaris
;XX
;OC   Canis familiaris
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
;XX
;RN   [1]  (bases 1 to 196)
;RA   Jurka,J. and Gentles,A.
;RT   Young dog SINE element SINEC2A1_CF.
;RL   Direct Submission to Repbase Update (2004)
;XX
;CC   Average similarity to consensus 94%. This sequence, and
;CC   SINEC2A2, supersede previous SINEC2_CF.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 196 BP; 42 A; 57 C; 48 G; 49 T; 0 other;
SINEC2A1_CF
1
;ID   SKIPPER     DNA   ; INV   ; 6998 BP
;XX
;DE   Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag)
;DE   gene, complete cds; and Pro (pro) and Pol (pol) genes, partial
;DE   cds.
;XX
;AC   AF049230
;XX
;DT   27-JUL-1999 (Rel. 4.06, Created)
;DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; SKIPPER.
;XX
;OS   Dictyostelium discoideum
;XX
;OC   Dictyostelium discoideum
;OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
;XX
;RN   [1]  (bases 1 to 6998)
;RA   Leng,P., Klatte,H.D., Schumann,G., Boeke,D.J. and Steck,L.T.
;RT   Skipper, an LTR retrotransposon of Dictyostelium.
;RL   Nucleic Acids Res 26(8), 2008-2015 (1998)
;XX
;RN   [2]  (bases 1 to 6998)
;RA   Schumann,G.
;RT   SKIPPER.
;RL   Direct Submission to Genbank (17-FEB-1998)Molecular Biology and
;RL   Genetics, Johns Hopkins University, 725 N. Wolfe Street,
;RL   Baltimore, MD 21205, USA
;XX
;DR   Positions       1    6998  Accession No      AF049230 GenBank
;XX
;SQ   Sequence 6998 BP; 2750 A; 1140 C; 1033 G; 2075 T; 0 other;
SKIPPER
1
;ID   SVA         DNA   ; HUM   ; 1640 BP
;XX
;DE   Composite retroposon.
;XX
;AC   L09706
;XX
;DT   01-OCT-1995 (Rel. 1.09, Created)
;DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
;XX
;KW   SINE; Interspersed Repeat; Repetitive sequence; SINE-R; SVA;
;KW   composite transposon.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Ono,M., Kawakami,M. and Takezawa,T.
;RT   A novel human nonretroviral retroposon derived from an
;RT   endogenous retrovirus.
;RL   Nucleic Acids Res 15, 8725-8737 (1987)
;XX
;RN   [2]
;RA   Shen,L., Wu,C.L., Sanlioglu,S., Chen,R., Mendoza,R.A.,
;RA   Dangel,W.A., Carroll,C.M., Zipf,B.W. and Yu,Y.C.
;RT   Structure and genetics of the partially duplicated gene RP
;RT   located immediately upstream of the complement C4A and the C4B
;RT   genes in the HLA class III region. Molecular cloning,
;RT   exon-intron structure, composite retroposon, and breakpoint of
;RT   gene duplication.
;RL   J. Biol. Chem 269, 8466-8476 (1994)
;XX
;CC   This element consists of fragments of two Alu elements and a
;CC   fragment
;CC   of an HERV-K LTR (LTR5) flanking a variable number of 40 bp
;CC   tandem
;CC   repeats.
;XX
;DR   Positions    7919    6280  Accession No        L09706 GenBank
;XX
;SQ   Sequence 1640 BP; 286 A; 539 C; 497 G; 318 T; 0 other;
SVA
1
;ID   SZ-10_I     DNA   ; ORY   ; 5660 BP
;XX
;DE   Gypsy-type LTR-retrotransposon SZ-10 (internal portion).
;XX
;AC   AC137612
;XX
;DT   22-AUG-2005 (Rel. 10.08, Created)
;DT   22-AUG-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; SZ-10_LTR.
;XX
;OS   Oryza sativa (japonica cultivar-group)
;XX
;OC   Oryza sativa (japonica cultivar-group)
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
;XX
;RN   [1]  (bases 1 to 5660)
;RA   Jurka,J.
;RT   SZ-10: Gypsy-type LTR retrotransposon from rice.
;RL   Repbase Reports 5(8), 221-221 (2005)
;XX
;CC   This is a relatively new insert. LTRs are identical and ORF
;CC   appears to be intact.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           973..5658
;FT                 /product="SZ-10_I_1p"
;FT                 /translation="MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNR
;FT                 LPEPPPEDANASHHGEEDEESEGEAAARLAREQRRRRRDRVVANARRPPH
;FT                 PGRGNGGRGADRGREHGLEESGTDEEVEQPHRDDRRHRGNRGRNQPNEER
;FT                 FGKLKFTMPKFEGGSDPEVYLTWELKVDKIFRLHNYSERKKVAMAALEFD
;FT                 GYALIWWEQMLNEREEAGQGDVRSWAEMKREMRARFVPKHYRRDLFDKLQ
;FT                 NLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEF
;FT                 QQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSRGSGN
;FT                 RGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGI
;FT                 QCFKCGGRGHVARECPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDI
;FT                 CEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDKVVKVIIDGGS
;FT                 CHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEY
;FT                 IDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYTIKWKGKELILKP
;FT                 MTPQQILAEHLQKSSEVRNESAKEGQKNNLSAPHKSVSESHKPNMRDNKK
;FT                 REGENLVMIATKSEMRDVRRNPEQVLFILVCKDTLLSANDLTSVPSVVAR
;FT                 VLQEYEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKE
;FT                 IQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVR
;FT                 YRHPIPRLDDMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFG
;FT                 LYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIYSKTLEE
;FT                 HVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQVDESKV
;FT                 KAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQ
;FT                 WGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNG
;FT                 QPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHE
;FT                 ALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLL
;FT                 NQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRAN
;FT                 KLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQR
;FT                 LVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRD
;FT                 SIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRD
;FT                 TKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKK
;FT                 NLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQE
;FT                 RSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLV
;FT                 WVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTF
;FT                 NVADLTPFFGLEDSESSRSTPFQEGE"
;XX
;DR   Positions  144269  138610  Accession No      AC137612 Genbank
;XX
;SQ   Sequence 5660 BP; 1769 A; 984 C; 1304 G; 1603 T; 0 other;
SZ-10_I
1
;ID   SZ-64       DNA   ; ORY   ; 5342 BP
;XX
;DE   Rice gypsy-type retrotransposon SZ-64.
;XX
;AC   .
;XX
;DT   04-AUG-2002 (Rel. 7.07, Created)
;DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   Gypsy superfamily; SZ-3; SZ-64.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 5342)
;RA   Jiang,N. and Wessler,R.S.
;RT   SZ-64: a gypsy-type retrotransposon from Oryza sativa.
;RL   Repbase Reports 2(7), 118-118 (2002)
;XX
;CC   SZ-64 is a gypsy-type retrotransposon. It has 297bp LTRs.
;CC   Internal region is related to SZ-3.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 5342 BP; 1294 A; 1152 C; 1238 G; 1658 T; 0 other;
SZ-64
1
;ID   SZ-67LTR    DNA   ; ORY   ; 1540 BP
;XX
;DE   Rice putative long terminal repeat SZ-67LTR - a consensus.
;XX
;AC   .
;XX
;DT   11-NOV-2002 (Rel. 7.1, Created)
;DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; Long terminal repeat;
;KW   SZ-67LTR; retrotransposon.
;XX
;OS   Oryza sativa
;XX
;OC   Oryza sativa
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Ehrhartoideae; Oryzeae; Oryza.
;XX
;RN   [1]  (bases 1 to 1540)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   SZ-67LTR: a putative LTR from Oryza sativa.
;RL   Repbase Reports 2(10), 29-29 (2002)
;XX
;CC   Sequence common to both SZ-62LTR and SZ-67LTR was removed and
;CC   listed separately as SZ-COM. SZ-COM is 1308bp long and was
;CC   present in SZ-62LTR (bases 3314 to 4610) and in SZ-67LTR (bases
;CC   2187 to 3496).
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1540 BP; 569 A; 205 C; 271 G; 482 T; 13 other;
SZ-67LTR
1
;ID   Sat-CR1_GG  DNA   ; VRT   ; 770 BP
;XX
;DE   Gallus gallus satellite sequence - consensus.
;XX
;AC   .
;XX
;DT   22-OCT-2004 (Rel. 9.09, Created)
;DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
;XX
;KW   SAT; Satellite; Simple Repeat; CR1 element; Sat-CR1_GG;
;KW   satellite sequence.
;XX
;OS   Gallus gallus
;XX
;OC   Gallus gallus
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
;OC   Phasianinae; Gallus.
;XX
;RN   [1]
;RA   Li,J. and Leung,C.F.
;RT   A CR1 element is embedded in a novel tandem repeat in the
;RT   chicken genome.
;RL   Unpublished
;XX
;RN   [2]
;RA   Silva,R. and Burch,B.J.
;RT   Evidence that chicken CR1 elements represent a novel family of
;RT   retroposons.
;RL   Mol. Cell. Biol 9(8), 3563-3566 (1989)
;XX
;RN   [3]
;RA   Gentles,A., Kohany,O. and Jurka,J.
;RT   Consensus of chicken satellite element similar to CR1.
;RL   Direct Submission to Repbase Update (JUN-2004)
;XX
;CC   This sequence is a satellite repeat from Gallus gallus. It
;CC   contains an approximately 200 bp fragment that is 71% similar
;CC   to the chicken CR1 element.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 770 BP; 184 A; 248 C; 157 G; 181 T; 0 other;
Sat-CR1_GG
1
;ID   TAG3N1      DNA   ; ATH   ; 754 BP
;XX
;DE   TAG3N1, a non-autonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   30-NOV-2001 (Rel. 6.1, Created)
;DT   30-NOV-2001 (Rel. 6.1, Last updated, Version 1)
;XX
;KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   hAT superfamily; TAG1; TAG3N1; non-autonomous DNA transposon.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 754)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   TAG3N1, a non-autonomous DNA transposon.
;RL   Repbase Reports 1(3), 36-36 (2001)
;XX
;CC   TAG is a subfamily of HAT-like DNA transposons. TAG3N1 is 80%
;CC   identical to the TAG1 autonomous transposon. There are ~10
;CC   copies of TAG3N1 present in the genome, they are ~97% identical
;CC   to the consensus sequence.
;CC   TAG3N1 has imperfect 22-bp TIRs (4 mismatches) and is flanked by
;CC   8-bp target-site duplications.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 754 BP; 226 A; 119 C; 120 G; 288 T; 1 other;
TAG3N1
1
;ID   TART        DNA   ; DRO   ; 14477 BP
;XX
;DE   Drosophila melanogaster telomere-associated transposons TART,
;DE   TART-A and HeT-A, and TART-A ORF2 gene, partial cds.
;XX
;AC   U02279
;XX
;DT   27-JUL-1999 (Rel. 4.06, Created)
;DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
;XX
;KW   DMU02279; TART.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 14477)
;RA   Levis,W.R., Ganesan,R., Houtchens,K., Tolar,A.L. and Sheen,F.
;RT   Transposons in place of telomeric repeats at a Drosophila
;RT   telomere.
;RL   Cell 75, 1083-1093 (1994)
;XX
;RN   [2]  (bases 1 to 14477)
;RA   Levis,W.R.
;RT   TART.
;RL   Direct Submission to Genbank (28-SEP-1993)Robert W. Levis, Fred
;RL   Hutchinson Cancer Research Center, Division of Basic Sciences,
;RL   1124 Columbia St., Seattle, WA 98401, USA
;XX
;DR   Positions       1   14477  Accession No        U02279 GenBank
;XX
;SQ   Sequence 14477 BP; 4765 A; 3610 C; 3009 G; 3093 T; 0 other;
TART
1
;ID   TCN2-LTR    DNA   ; FNG   ; 966 BP
;XX
;DE   C. neoformans LTR retrotransposon - LTR consensus.
;XX
;AC   .
;XX
;DT   30-MAR-2005 (Rel. 10.03, Created)
;DT   30-MAR-2005 (Rel. 10.03, Last updated, Version 1)
;XX
;KW   LTR Retrotransposon; Interspersed Repeat; TCN2-LTR.
;XX
;OS   Cryptococcus neoformans var. neoformans
;XX
;OC   Cryptococcus neoformans var. neoformans
;OC   Eukaryota; Fungi; Basidiomycota; Hymenomycetes;
;OC   Heterobasidiomycetes; Tremellomycetidae; Tremellales;
;OC   Tremellaceae; Filobasidiella; Filobasidiella neoformans.
;XX
;RN   [1]  (bases 1 to 966)
;RA   Goodwin,T.J. and Poulter,R.T.
;RT   The diversity of retrotransposons in the yeast Cryptococcus
;RT   neoformans.
;RL   Yeast 18(9), 865-880 (2001)
;XX
;RN   [2]  (bases 1 to 966)
;RA   Loftus,B.J., Fung,E., Roncaglia,P., Rowley,D., Amedeo,P.,
;RA   Bruno,D., Vamathevan,J., Miranda,M., Anderson,I.J., Fraser,J.A.,
;RA   Allen,J.E., Bosdet,I.E., Brent,M.R., Chiu,R., Doering,T.L.,
;RA   Donlin,M.J., D'Souza,C.A., Fox,D.S., Grinberg,V., Fu,J.,
;RA   Fukushima,M., Haas,B.J., Huang,J.C., Janbon,G., Jones,S.J.,
;RA   Koo,H.L., Krzywinski,M.I., Kwon-Chung,J.K., Lengeler,K.B.,
;RA   Maiti,R., Marra,M.A., Marra,R.E., Mathewson,C.A., Mitchell,T.G.,
;RA   Pertea,M., Riggs,F.R., Salzberg,S.L., Schein,J.E.,
;RA   Shvartsbeyn,A., Shin,H., Shumway,M., Specht,C.A., Suh,B.B.,
;RA   Tenney,A., Utterback,T.R., Wickes,B.L., Wortman,J.R., Wye,N.H.,
;RA   Kronstad,J.W., Lodge,J.K., Heitman,J., Davis,R.W., Fraser,C.M.
;RA   and Hyman,R.W.
;RT   The genome of the basidiomycetous yeast and human pathogen
;RT   Cryptococcus neoformans.
;RL   Science 307(5713), 1321-1324 (2005)
;XX
;RN   [3]  (bases 1 to 966)
;RA   Gentles,A. and Jurka,J.
;RT   C. neoformans LTR retrotransposon TCN2.
;RL   Direct Submission to Repbase Update (15-MAR-2005)
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 966 BP; 174 A; 298 C; 159 G; 333 T; 2 other;
TCN2-LTR
1
;ID   TDR18       DNA   ; ZEB   ; 572 BP
;XX
;DE   Zebrafish non-autonomous DNA transposon.
;XX
;AC   .
;XX
;DT   04-MAR-2002 (Rel. 7.02, Created)
;DT   04-MAR-2002 (Rel. 7.02, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; TDR18.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 572)
;RA   Jurka,J.
;RT   TDR18: a non-autonomous DNA transposon from Danio rerio.
;RL   Repbase Reports 2(2), 28-28 (2002)
;XX
;CC   TA target site duplication.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 572 BP; 207 A; 80 C; 81 G; 202 T; 2 other;
TDR18
1
;ID   TDR7        DNA   ; ZEB   ; 541 BP
;XX
;DE   Zebrafish non-autonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   04-MAR-2002 (Rel. 7.02, Created)
;DT   04-MAR-2002 (Rel. 7.02, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; TDR7.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 541)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   TDR7: a non-autonomous DNA transposon from Danio rerio.
;RL   Repbase Reports 2(2), 35-35 (2002)
;XX
;CC   TA-target site duplication. Several hundred copies in the
;CC   genome.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 541 BP; 187 A; 62 C; 62 G; 227 T; 3 other;
TDR7
1
;ID   TDR9        DNA   ; ZEB   ; 208 BP
;XX
;DE   Zebrafish non-autonomous DNA transposon - a consensus.
;XX
;AC   .
;XX
;DT   04-MAR-2002 (Rel. 7.02, Created)
;DT   04-MAR-2002 (Rel. 7.02, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; TDR9; TC1.
;XX
;OS   Danio rerio
;XX
;OC   Danio rerio
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
;OC   Cypriniformes; Cyprinidae; Danio.
;XX
;RN   [1]  (bases 1 to 208)
;RA   Jurka,J. and Drazkiewicz,A.
;RT   TDR9: a non-autonomous DNA transposon from Danio rerio.
;RL   Repbase Reports 2(2), 37-37 (2002)
;XX
;CC   Distantly related to Tc1. Several hundred copies.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 208 BP; 71 A; 29 C; 28 G; 70 T; 10 other;
TDR9
1
;ID   TE2-5_CR    DNA   ; CHL   ; 751 BP
;XX
;DE   TE2-5_CR is a family of nonautonomous transposable elements - a
;DE   consensus sequence.
;XX
;AC   .
;XX
;DT   08-JUN-2004 (Rel. 9.05, Created)
;DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
;XX
;KW   AAC target site duplications; TE2-5_CR; Transposable element.
;XX
;OS   Chlamydomonas reinhardtii
;XX
;OC   Chlamydomonas reinhardtii
;OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
;OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
;XX
;RN   [1]  (bases 1 to 751)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   TE2-5_CR, a family of nonautonomous transposable elements in the
;RT   Chlamydomonas reinhardtii genome.
;RL   Repbase Reports 4(5), 140-140 (2004)
;XX
;CC   TE2-5_CR is a family of nonautonomous transposable elements.
;CC   The consensus sequence is less than 5% divergent from TE2-5_CR
;CC   copies. Classification of this family is not known. It is
;CC   possible that it belongs to a novel superfamily. Features of
;CC   this
;CC   superfamily include preferential insertions into AAAC targets
;CC   that are accompanied by the AAC target-site duplications, a
;CC   18-21-bp
;CC   palindrome separated by 3-5 base pairs from the 3' end; and the
;CC   AGCC
;CC   3' termini.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 751 BP; 146 A; 200 C; 241 G; 164 T; 0 other;
TE2-5_CR
1
;ID   TIGGER2     DNA   ; MAM   ; 2718 BP
;XX
;DE   Autonomous DNA transposon.
;XX
;AC   .
;XX
;DT   19-FEB-1997 (Rel. 2.01, Created)
;DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 3)
;XX
;KW   Mariner; DNA transposon; Interspersed Repeat;
;KW   Autonomous DNA transposon; TIGGER2; Tc1/mariner supergroup.
;XX
;OS   Homo sapiens
;XX
;OC   Homo sapiens
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
;XX
;RN   [1]
;RA   Smit,A.F. and Riggs,D.A.
;RT   Tiggers and other DNA transposon fossils in the human genome.
;RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996)
;XX
;RN   [2]
;RA   Smit,A.F.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (FEB-1998)
;XX
;CC   TIGGER2 is a pogo-like DNA transposon of the mariner-Tc1 family.
;CC   The open reading fraim from pos. 603-2486 encodes a transposase
;CC   59%
;CC   identical to that of TIGGER1. Average divergence of copies 12%.
;CC   24 bp terminal inverted repeats, TA target site
;CC   Includes MER28 (bases 1 to 59; 2343 to 2708) (see there for
;CC   refs).
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 2718 BP; 882 A; 549 C; 585 G; 700 T; 2 other;
TIGGER2
1
;ID   TOL2_OL     DNA   ; VRT   ; 4026 BP
;XX
;DE   DNA transposon Tol2.
;XX
;AC   D84375
;XX
;DT   21-APR-1997 (Rel. 2.03, Created)
;DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 2)
;XX
;KW   DNA transposon; Interspersed Repeat; TOL2_OL; TOL3_OL; Tol2.
;XX
;OS   Oryzias latipes
;XX
;OC   Oryzias latipes
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
;OC   Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha;
;OC   Atherinomorpha; Beloniformes; Adrianichthyidae; Oryziinae;
;OC   Oryzias.
;XX
;RN   [1]
;RA   Hori,H.
;RT   Direct submission.
;RL   Direct Submission to EMBL/GenBank/DDBJ (10-APR-1996). Hiroshi
;RL   Hori, Nagoya University, Division of Biological Science;
;RL   Furo-cho, Chikusa-ku, Nagoya, Aichi 464-01, Japan
;RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
;RL   Fax:052-789-2974)
;XX
;RN   [2]
;RA   Koga,A., Suzuki,M., Inagaki,H., Bessho,Y. and Hori,H.
;RT   Transposable element in fish.
;RL   Nature 383(6595), 30-30 (1996)
;XX
;CC   repeat_unit 1..19
;CC   /note="5' terminal inverted repeat"
;CC   repeat_unit 4010..4026
;CC   /note="3' terminal inverted repeat"
;CC   CDS 320..673
;CC   /note="ORF1"
;CC   CDS 1512..2570
;CC   /note="ORF2"
;CC   CDS 2668..2976
;CC   /note="ORF3"
;CC   CDS 3358..3714
;CC   /note="ORF4".
;XX
;DR   Positions       1    1433  Accession No        D84375 GenBank
;XX
;SQ   Sequence 4026 BP; 1209 A; 754 C; 747 G; 1316 T; 0 other;
TOL2_OL
1
;ID   TOM_I       DNA   ; DRO   ; 6112 BP
;XX
;DE   TOM_I is an internal portion of TOM, a gypsy-like endogenous
;DE   retrovirus.
;XX
;AC   Z24451
;XX
;DT   30-MAY-2000 (Rel. 5.04, Created)
;DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   endogenous retrovirus; Gypsy superfamily; TOM; TOM_I; TOM_LTR;
;KW   env; gag; pol.
;XX
;OS   Drosophila ananassae
;XX
;OC   Drosophila ananassae
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 6112)
;RA   Tanda,S., Mullor,L.J. and Corces,G.V.
;RT   The Drosophila tom retrotransposon encodes an envelope protein.
;RL   Mol. Cell. Biol 14(8), 5392-5401 (1994)
;XX
;RN   [2]  (bases 1 to 6112)
;RA   Corces,G.V.
;RT   TOM_I.
;RL   Direct Submission to Genbank (08-JUL-1993)CORCES V. G., The
;RL   Johns Hopkins University, Biology, 34th and Charles Sts,
;RL   Baltimore, Maryland, USA, 21218
;XX
;DR   Positions     475    6586  Accession No        Z24451 GenBank
;XX
;SQ   Sequence 6112 BP; 2443 A; 1286 C; 921 G; 1462 T; 0 other;
TOM_I
1
;ID   TREP102_LTR DNA   ; PLN   ; 3130 BP
;XX
;DE   Gypsy-type insertion in BARE-1, TREP102 (LTR portion).
;XX
;AC   Z17327
;XX
;DT   16-OCT-2002 (Rel. 7.09, Created)
;DT   13-SEP-2005 (Rel. 7.09, Last updated, Version 2)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   Repetitive sequence; TREP102; complete element;
;KW   target site duplication.
;XX
;OS   Hordeum vulgare
;XX
;OC   Hordeum vulgare
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; Pooideae; Triticeae; Hordeum.
;XX
;RN   [1]  (bases 1 to 3130)
;RA   Manninen,I. and Schulman,H.A.
;RT   BARE-1, a copia-like retroelement in barley (Hordeum vulgare
;RT   L.).
;RL   Plant Mol Biol 22(5), 829-846 (1993)
;XX
;RN   [2]
;RA   Wicker,T.
;RT   Direct submission.
;RL   Direct Submission to Repbase Update (from TREP) (02-APR-2002).
;XX
;RN   [3]  (bases 1 to 3130)
;RA   Jurka,J.
;RT   TREP102: Gypsy-type LTR retrotransposon.
;RL   Direct Submission to Repbase Update (13-SEP-2005)
;XX
;CC   5bp target site duplications: "CCTAG".
;XX
;DR   Positions    7558   10687  Accession No        Z17327 Genbank
;XX
;SQ   Sequence 3130 BP; 569 A; 844 C; 725 G; 992 T; 0 other;
TREP102_LTR
1
;ID   TV1I        DNA   ; DRO   ; 5963 BP
;XX
;DE   Drosophila virilis retrotransposon TV1, an internal portion.
;XX
;AC   AF056940
;XX
;DT   11-JAN-1999 (Rel. 4, Created)
;DT   11-JAN-1999 (Rel. 4, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   Gypsy superfamily; TV1I; TV1LTR.
;XX
;OS   Drosophila virilis
;XX
;OC   Drosophila virilis
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 5963)
;RA   Andrianov,V.B., Zakharyev,M.V., Evgen'ev,B.M. and Schuppe,G.N.
;RT   Gypsy group retrotransposon Tv1 from Drosophila virilis.
;RL   Unpublished
;XX
;RN   [2]  (bases 1 to 5963)
;RA   Andrianov,V.B., Zakharyev,M.V., Evgen'ev,B.M. and Schuppe,G.N.
;RT   TV1I.
;RL   Direct Submission to Genbank (01-APR-1998)Vavilov Institute of
;RL   General Genetics Russian Academy of Sciences, Gubkin St. 3,
;RL   Moscow 117809, Russia
;XX
;DR   Positions     453    6415  Accession No      AF056940 GenBank
;XX
;SQ   Sequence 5963 BP; 2508 A; 1086 C; 880 G; 1489 T; 0 other;
TV1I
1
;ID   TransibN1_DP DNA   ; INV   ; 1194 BP
;XX
;DE   TransibN1_DP is a nonautonomous DNA transposon - a consensus
;DE   sequence.
;XX
;AC   .
;XX
;DT   13-JUN-2005 (Rel. 10.05, Created)
;DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
;XX
;KW   Transib; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   TransibN1_DP.
;XX
;OS   Drosophila pseudoobscura
;XX
;OC   Drosophila pseudoobscura
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 1194)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
;RT   from Transib Transposons.
;RL   PLoS Biol 3(6),  (2005)
;XX
;CC   TransibN1_DP belongs to the TRANSIB family of DNA transposons.
;CC   This element is characterized by 5-bp target site duplications.
;CC   TransibN1_DP has 36-bp terminal inverted repeats.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 1194 BP; 400 A; 207 C; 202 G; 385 T; 0 other;
TransibN1_DP
1
;ID   URR1        DNA   ; ROD   ; 236 BP
;XX
;DE   Rodent-specific putative non-autonomous DNA transposon - a
;DE   consensus.
;XX
;AC   .
;XX
;DT   25-APR-1997 (Rel. 2.03, Created)
;DT   25-APR-1997 (Rel. 2.03, Last updated, Version 1)
;XX
;KW   DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   non-autonomous DNA transposon; PR; URR1.
;XX
;OS   Rodentia
;XX
;OC   Rodentia
;OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
;OC   Mammalia; Eutheria.
;XX
;RN   [1]
;RA   Ogata,T.R., Rosa,A.P. and Zepf,E.N.
;RT   Sequence of the gene for murine complement component C4.
;RL   J. Biol. Chem 264, 16565-16572 (1989)
;XX
;RN   [2]
;RA   Gale,M.J., Tobey,A.R. and D'Anna,A.J.
;RT   Localization and DNA sequence of a replication origin in the
;RT   rhodopsin gene locus of Chinese hamster cells.
;RL   J. Mol. Biol 224(2), 343-358 (1992)
;XX
;RN   [3]  (bases 1 to 236)
;RA   Smit,A.F.
;RT   URR1.
;RL   Direct Submission to Repbase Update (1997)
;XX
;CC   URR1 has 19-21 bp (imperfect) terminal inverted repeats (TIRs).
;CC   The terminal TA dinucleotides are probably flanking repeats.
;CC   The element is related to PMER1 in prosimians.
;XX
;DR   [3] (Consensus)
;XX
;SQ   Sequence 236 BP; 58 A; 57 C; 51 G; 70 T; 0 other;
URR1
1
;ID   UVIR_DV     DNA   ; DRO   ; 6565 BP
;XX
;DE   Drosophila virilis Uvir non-LTR retrotransposon, a consensus.
;XX
;AC   .
;XX
;DT   17-NOV-2004 (Rel. 9.1, Created)
;DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
;XX
;KW   Non-LTR Retrotransposon; Interspersed Repeat; HeT-A; UVIR_DV;
;KW   gag domain.
;XX
;OS   Drosophila virilis
;XX
;OC   Drosophila virilis
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]
;RA   Casacuberta,E. and Pardue,L.M.
;RT   HeT-A elements in Drosophila virilis: Retrotransposon telomeres
;RT   are conserved across the Drosophila genus.
;RL   Proc. Natl. Acad. Sci. U.S.A 100(24), 14091-14096 (2003)
;XX
;RN   [2]
;RA   Gentles,A. and Jurka,J.
;RT   Uvir non-LTR retrotransposon.
;RL   Direct Submission to Repbase Update (OCT-2004)
;XX
;DR   [2] (Consensus)
;XX
;SQ   Sequence 6565 BP; 2168 A; 1674 C; 1039 G; 1678 T; 6 other;
UVIR_DV
1
;ID   VANDAL17    DNA   ; ATH   ; 8911 BP
;XX
;DE   Autonomous DNA transposon VANDAL17 - a consensus.
;XX
;AC   .
;XX
;DT   31-MAR-2000 (Rel. 5.02, Created)
;DT   31-MAR-2000 (Rel. 5.02, Last updated, Version 1)
;XX
;KW   MuDR; DNA transposon; Interspersed Repeat;
;KW   Autonomous DNA transposon; MuDR-like transposase;
;KW   VANDAL superfamily; VANDAL17.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 8911)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   VANDAL17.
;RL   Direct Submission to Repbase Update (MAR-2000)
;XX
;CC   VANDAL17 is a consensus sequence of a VANDAL-like autonomous DNA
;CC   transposon. It was reconstructed based on 5 copies of the
;CC   transposon. These copies are flanked by 9 bp duplications of
;CC   different
;CC   target sites, and they are ~97% identical to the consensus
;CC   sequence.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 8911 BP; 2838 A; 1637 C; 1596 G; 2840 T; 0 other;
VANDAL17
1
;ID   VANDAL1N1   DNA   ; ATH   ; 2265 BP
;XX
;DE   Nonautonomous DNA transposon VANDAL1N1 - a consensus.
;XX
;AC   .
;XX
;DT   11-FEB-2000 (Rel. 5.01, Created)
;DT   11-FEB-2000 (Rel. 5.01, Last updated, Version 1)
;XX
;KW   MuDR; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   nonautonomous DNA transposon; VANDAL1; VANDAL1N1.
;XX
;OS   Arabidopsis thaliana
;XX
;OC   Arabidopsis thaliana
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons;
;OC   core eudicots; rosids; eurosids II; Brassicales; Brassicaceae;
;OC   Arabidopsis.
;XX
;RN   [1]  (bases 1 to 2265)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   VANDAL1N1.
;RL   Direct Submission to Repbase Update (FEB-2000)
;XX
;CC   VANDAL1N1 is an nonautonomous DNA transposon. It induces
;CC   9 bp target site duplications upon its integration
;CC   in the genome.
;CC   There are ~10 copies of VANDAL1N1 in the genome, they are ~98%
;CC   identical to the consensus sequence.
;CC   Presumably, VANDAL1N1 is a derivative of VANDAL1.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 2265 BP; 752 A; 343 C; 380 G; 790 T; 0 other;
VANDAL1N1
1
;ID   WORF_DMi    DNA   ; DRO   ; 4174 BP
;XX
;DE   Drosophila miranda non-LTR retrotransposon worf, complete
;DE   sequence.
;XX
;AC   AY144572
;XX
;DT   09-JUL-2004 (Rel. 9.06, Created)
;DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
;XX
;KW   Non-LTR Retrotransposon; Interspersed Repeat; WORF_DMi;
;KW   non-LTR retrotransposon worf.
;XX
;OS   Drosophila miranda
;XX
;OC   Drosophila miranda
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]
;RA   Bachtrog,D.
;RT   Accumulation of Spock and Worf, Two Novel Non-LTR
;RT   Retrotransposons, on the Neo-Y Chromosome of Drosophila miranda.
;RL   Mol. Biol. Evol 20(2), 173-181 (2003)
;XX
;DR   Positions       1    4174  Accession No      AY144572 Genbank
;XX
;SQ   Sequence 4174 BP; 1010 A; 1004 C; 752 G; 1408 T; 0 other;
WORF_DMi
1
;ID   ZAM_I       DNA   ; DRO   ; 7490 BP
;XX
;DE   ZAM_I is an internal portion of the ZAM retrovirus.
;XX
;AC   AJ000387
;XX
;DT   16-JUL-1999 (Rel. 4.06, Created)
;DT   16-JUL-1999 (Rel. 4.06, Last updated, Version 1)
;XX
;KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
;KW   endogenous retrovirus; Gypsy superfamily; ZAM_I; ZAM_LTR; env;
;KW   gag; pol.
;XX
;OS   Drosophila melanogaster
;XX
;OC   Drosophila melanogaster
;OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
;OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
;OC   Ephydroidea; Drosophilidae; Drosophila.
;XX
;RN   [1]  (bases 1 to 7490)
;RA   Leblanc,P., Desset,S., Dastugue,B. and Vaury,C.
;RT   Invertebrate retroviruses: ZAM a new candidate in
;RT   D.melanogaster.
;RL   EMBO J 16(24), 7521-7531 (1997)
;XX
;CC   ZAM_I uses PBS related to the tRNA Ser.
;CC   ZAM_I encodes
;CC   gag:
;CC   /translation="MSKKLTQTIKQTTRSVLESHTFPKRVTRSVSKTNTLPVIRESTP
;CC   LPPLQPINMDSGNASVGNSAPVTPTVSGFSSIATALSATDILAFVKELPTFDGTPGQL
;CC   DKYITSVEEIIMLIRGTDQTPYGLLTLRAIRNKIVGRADEALNLANTKLIWDDIKSNL
;CC   LRLYSSKKSEATLLGELQSLPDNLTLGQLFFGLSRIRSQLISITSNSGQSATIIEAKK
;CC   TLYDEVCLNAFISRIREPLKTVIRLKDPKTIETAYELCQGERARYQNRNPYPPTQNNT
;CC   ERRTNNYNNNNNNNHRDNNNRNNVTRLTPKTTQTITQTPIPNIVNQTTATELVTRLKI
;CC   IKQIMGYTT"
;CC   pol:
;CC   /translation="NKLWATQHRRRKTHPTLPYQLKFSGTRLRNPTGYINPTTHATSL
;CC   PYITLNLQQKFPLSFLIDTGSNNSFIDPESANQLECTILPTSTSITTALNSFKIEEKA
;CC   IFPMPPEFKTEGQITLLKFKFHSYFNGLIGMDLLSHLEAKVDLVNLQLVTSKSTLPIF
;CC   LYTNQASKIFNIPAYSKVILPLPVKTNHGEFYCCTTQLNNELSLSEGLYKSNNNIANV
;CC   EISNQSDSDKLLYLEYPLETIPYNKNDHIELFNISATPLNNDTPQAPLHILTEHLNPE
;CC   EKTALTTLCKQFRDIFYNPETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKK
;CC   QIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIP
;CC   NINDILDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNA
;CC   PATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANFKLQPS
;CC   KSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIR
;CC   DFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDAS
;CC   NFALGAVLSQGSLQNDRPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVK
;CC   FTIVTDHKPLIWLMNFKEPNSKIIRWRLQLMEYNFEIIHKKGSQNVIADALSRADPNL
;CC   NYNETLTVKPCPTSEKPINEFNTQLILEIDTNTSYQTTTPFKQKIRKKYSQPCFDFDN
;CC   IVKILKGTLKPNRICAFLADDNNSALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPE
;CC   QNKFIQEYHTNSNHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQPQN
;CC   IVFETPETPSKPLDIIHIDIYTINNNFNLTIIDKFSKFAAVYPIPNRNGINCIKAIKN
;CC   FFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTE
;CC   IYRIILDTRKKHKLPTDHEEIMSETVITYNNAIHSTTKHTPFELFNGRTHLFEKTIIP
;CC   NNEHDYLNKLNTFQDKLYSEIKEKLSTNTQQRIEKLNTSRVEPTTVQPNSTIFRKENR
;CC   RNKLTPRFSLHRTAKDKGKTLVTTRNQKIHKSKIRKISKPPNDLSLSTCIPDLAMGHT
;CC   NLSSSTTSIAPTS"
;CC   env:
;CC   /translation="MENTLLNLLLVLLSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVI
;CC   GNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSISILNAKLAQTQSKIDALTP
;CC   FSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDE
;CC   VQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLV
;CC   SHLSDIIESTLLAKINVIPKLILDKTEITKIKQIFKTQNYTIKSEQHIYNLLKMNALN
;CC   YQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYNNKSNSMFSTMYKCP
;CC   VIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGN
;CC   NLPIISSNQTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKN
;CC   ATINILTLERLHLDTLTTSNKLLVVAAGNSRHSTTLYILFTVSLVAVILTWTLRRDTH
;CC   IFHTGPDHILPIVAPPIPPSMAFAPNWGGRSYRPIGTIHHPSL"
;CC   It has been reported [1] that env is encoded by mRNA that
;CC   starts at LTR and includes two exons. The first exon is 203
;CC   bp-long and it starts at position 329; its coding 3'-region
;CC   is 38 bp-long.
;CC   Presumably, the first 5'-T nucleotide of reported ZAM_I is a
;CC   3'-terminus of ZAM_LTR (Kapitonov,V.V.).
;XX
;DR   Positions     473    7962  Accession No      AJ000387 GenBank
;XX
;SQ   Sequence 7490 BP; 2978 A; 1780 C; 1003 G; 1729 T; 0 other;
ZAM_I
1
;ID   ZMCOPIA1_I  DNA   ; PLN   ; 5416 BP
;XX
;DE   Copia-type element from Zea mays (internal portion).
;XX
;AC   AF215823
;XX
;DT   12-AUG-2005 (Rel. 10.08, Created)
;DT   30-AUG-2005 (Rel. 10.08, Last updated, Version 1)
;XX
;KW   Copia; LTR Retrotransposon; Interspersed Repeat; ZMCOPIA_LTR.
;XX
;OS   Zea mays
;XX
;OC   Zea mays
;OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta;
;OC   Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
;OC   Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea.
;XX
;RN   [1]  (bases 1 to 5416)
;RA   Cui,X., Hsia,A.P., Liu,F., Ashlock,D.A., Wise,R.P.
;RA   and Schnable,P.S.
;RT   Alternative transcription initiation sites and polyadenylation
;RT   sites are recruited during Mu suppression at the rf2a locus of
;RT   maize.
;RL   Genetics 163(2), 685-698 (2003)
;XX
;RN   [2]  (bases 1 to 5416)
;RA   Jurka,J.
;RT   ZMCOPIA1: Annotation of LTRs and of the internal region.
;RL   Direct Submission to Repbase Update (12-AUG-2005)
;XX
;CC   LTRs differ by 1bp deletion. The coding region appears to be
;CC   intact.
;XX
;FH   Key           Location/Qualifiers
;FT   CDS           482..4273
;FT                 /product="ZMCOPIA_I_1p"
;FT                 /translation="MDANTTAATGTITPAATGSEPAHGGAPYITGLGPLR
;FT                 ASSPLPLHRTSPPGFPAFASPTWSHRVAPSTIPTTDPPLVSTLASIQAAV
;FT                 MASRERERAASLALERERALGAALTTQMATTQRLLGHPTLADAEPPEDPH
;FT                 ASDLDADLIAALHAQAAGLHNIRALVSVVLDPASSHYPRWRGQVLLTLRR
;FT                 FVLDDHVLVDHDAPPPRSWCLMDSVVLSWLHGTITVELQDIIRDQADTAR
;FT                 QAWLALEDQFLGNRDARALHLDAQFHLFSQGDLSVGEYCRQMKGLADSLR
;FT                 DLGEPVADRTLVLNLLRGLSPRYGHLKALIKRSVPFPTFHAVRNELLLEE
;FT                 LTMANEAPTPASALYSAPTSGQPPSGGQATRPPSTGAPTRPPPAVPAAPR
;FT                 PTSTTDGGRRSRKGGRGSGGSSRGGPSGRGGGHAWPSFYNPWTGTIAMWP
;FT                 GQAPSTPRPPAPALLTTPHYGAPPYGVPVVPQAPSALLPPGTHTSTPWSP
;FT                 PAGGWDSTSLAAAFSTMAMTPPPSDWVIDSGASYHTTPTAGTLSRSHPPL
;FT                 PSHPSSIVVGNGSTLPVTSVGASVLPGPFYLNDVLVAPHITHNLLSVRRF
;FT                 TTDNSCSIEFDPSGFSVKDLATRTLLARCDSSGPLYTLQPSTAGVSPPPA
;FT                 LVSTTSSTTWHRRLGHPGPDVMTKITSSLDLSCSRGHFEGLCHACQLGRH
;FT                 TRLPFTTSFSRAEQAFDLVHCDLWTSPVLSLSGYKYYLVILDDFSHFLWT
;FT                 FPLRLKSDTFTTLTHFFTWVSTQFRRPVRALQCDNGREFDNNASRSFFLT
;FT                 HGVQLRLSCPYTSAQNGRAERMIRTTTNMLRCLLFQASLPASYWAEALHT
;FT                 ATHLLNRLPSKAVHHPTPHFALYGTAPSYDHLRVFGCACYPNTSATAPHK
;FT                 LSPRSTRCLFLGYSPDHKGYRCLDLTSHRIIISRHVVFDEDVFPLAGSTP
;FT                 PTDLDSLLESDPIPPPPSAPRLAPLPAPRAAPTTSSAPRAAPSTPPAPRA
;FT                 APSTPPAPRTAPSIPPAPRAAPSTPPAPRAAPSTPARFANPALVYHRRGH
;FT                 TTTSAPPDACPSTGAVRFADPAVVYHRREPAPPAAPDVPVAHSESSVYHP
;FT                 VAIHRDPGHVHPMVTRRAAGVTPPRRPAHPGSRYDQHSTRRFPGTLLRSH
;FT                 CPRRPTLASRYGGGVRGPLGQPHLGPGAASTRHQRGHRQVAISPQAGLRR
;FT                 LPRPLQGPLGPSGLHPAPRSGLRRDLQPCRQVRHCSRRPLPRPLPRLGDP
;FT                 SARCQECLPPWHSDGDCLLQPAHRLRRR"
;FT   CDS           3921..5279
;FT                 /product="ZMCOPIA_I_2p"
;FT                 /translation="MEEEYAALLANHTWDLVPRPPGTNVVTGKWLFRHKL
;FT                 ASDGSLDRYKARWVLRGFTQRPGVDYDETFSPVVKFATVRAVLSLALSRD
;FT                 WAIHQLDVKNAFLHGTLTETVYCSQPTGFVDADRPDLVCRLNRSLYGLKQ
;FT                 APRAWYSRFASYLASVGFVEAKSDTSLFIYRRGDDTVYLLLYVDDIVLTV
;FT                 STADLLHRTIVALQREFAMKDLGPLHHFLGVTAERRPQGLFLHQRQYAID
;FT                 ILERAGMSDCKPCTTPVDTQAKLSEDDGPPVADATSYRSLTGALQYLTFS
;FT                 RPDIAYAVQQVCLHMHTPREPHLTALKRILRYLRGSLDYGLLLRPSPTTE
;FT                 LVVYTDADWAGCPDTRRSTSGYAVFLGANLVSWAAKRQPVVSRSSAEAEY
;FT                 RAVAKRRGRGLLAAPAPPRASQSPPARHPRLLRQRQRGLPLHQPRAASAH
;FT                 EACGDRPPLRPRACRCR"
;XX
;DR   Positions       1    5416  Accession No      AF215823 Genbank
;XX
;SQ   Sequence 5416 BP; 743 A; 2279 C; 1333 G; 1061 T; 0 other;
ZMCOPIA1_I
1
;ID   piggyBac-N11_SP DNA   ; SPU   ; 395 BP
;XX
;DE   Nonautonomous family of piggyBac DNA transposons - a consensus
;DE   sequence.
;XX
;AC   .
;XX
;DT   30-SEP-2005 (Rel. 10.09, Created)
;DT   30-SEP-2005 (Rel. 10.09, Last updated, Version 1)
;XX
;KW   piggyBac; DNA transposon; Interspersed Repeat; Non-autonomous;
;KW   piggyBac-N11_SP.
;XX
;OS   Strongylocentrotus purpuratus
;XX
;OC   Strongylocentrotus purpuratus
;OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
;OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
;OC   Strongylocentrotidae; Strongylocentrotus.
;XX
;RN   [1]  (bases 1 to 395)
;RA   Kapitonov,V.V. and Jurka,J.
;RT   piggyBac-N11_SP, a family of nonautonomous DNA transposons in
;RT   the sea urchin genome.
;RL   Repbase Reports 5(9), 275-275 (2005)
;XX
;CC   The genome harbors several hundred copies of piggyBac-N11_SP
;CC   elements that are >90% identical to the consensus sequence and
;CC   characterized by imperfect 19-bp terminal inverted repeats
;CC   and the TTAA target site duplications.
;XX
;DR   [1] (Consensus)
;XX
;SQ   Sequence 395 BP; 129 A; 80 C; 75 G; 111 T; 0 other;
piggyBac-N11_SP
1

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* alignment score for local alignment may not always be equal to alignment score in map of hits because of use of heuristics for stitching fragments reported in map section, and use of different wu-blast parameters on stage of search and stage of producing local alignments.

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