# STOCKHOLM 1.0 BACTERIAL Trp #=GC CS 4425554..3343..........3433.66324.......42366.....5642.........24654555244.... #=GC BP +++++++..++++..........++++.+++++.......+++++.....+++++.......++++++++++++.... tdbD3280|Acholeplasma_laidlawii|2148|Trp|CCA GGGGGCATGGTGTCAAC-GGT-AGCACACAGGTCTCCAAAACCTTTAG-TGTGGGTTCGAATCCTGCTGCCCTCGCCA tdbD11461|Acinetobacter_sp._ADP1|62977|Trp|CCA AGGTCAGTAGTTCAATT-GGT-AGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTCCTGGCCTGCCA tdbD11336|Agrobacterium_tumefaciens_str._C58|176299|Trp|CCA -GGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGTAAGTTCGAGCCTTACTGCCCCTGCCA tdbD11319|Aquifex_aeolicus_VF5|224324|Trp|CCA GGGGCTGTAGCTCAATT-GGC-AGAGCGCGGGACTCCAAATCCCGTGGGTGGGGGTTCGAGTCCTCCCAGCCCCGCCA tdbD11428|Bacillus_anthracis_str._Ames|198094|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG--- tdbD11439|Bacillus_anthracis_str._Sterne|260799|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG--- tdbD11452|Bacillus_cereus_ATCC_10987|222523|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG--- tdbD11415|Bacillus_cereus_ATCC_14579|226900|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG--- tdbD11397|Bacillus_halodurans_C-125|272558|Trp|CCA AGGGGCATAGTTTAAC--GGT-AGAACAGAGGTCTCCAAAACCTCCGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11290|Bacillus_subtilis_subsp._subtilis_str._168|224308|Trp|CCA AGGGGCATAGTGTAAC--GGT-AGAACAGAGGTCTCCAAAACCTCCGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11462|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG--- tdbD11425|Bacteroides_thetaiotaomicron_VPI-5482|226186|Trp|CCA ACGGGAGTAGCTCAGTT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTCGGGAGTTCGAGCCTCTCCTCCCGTG--- tdbD11429|Bartonella_henselae_str._Houston-1|283166|Trp|CCA AGGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGCGGGTTCGAGCCCTGCTGCCCCTGCCA tdbD11465|Bartonella_quintana_str._Toulouse|283165|Trp|CCA AGGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGCGGGTTCAAGCCCTGCTGCCCCTGCCA tdbD11430|Bdellovibrio_bacteriovorus_HD100|264462|Trp|CCA AGGGGTGTAGCTCCAGC-GGT-AGAGCGAACGACTCCAAATCGTTAGGTCGTGGGTTCGAATCCCTCCGCCCCTGCCA tdbD11386|Bifidobacterium_longum_NCC2705|206672|Trp|CCA AGGGAAGTGGCGCAATT-GGT-AGCGCAACGGTCTCCAAAACCGTAGGTTGTGGGTTCGAGTCCCGCCTTCCCTGCCA tdbD11306|Borrelia_burgdorferi_B31|224326|Trp|CCA AGGTCAGTAGTTCCAAC-GGT-AGAACGACAGTCTCCAAAACTGTATGCTGGGGGTTCGAATCCCTCCTGACCTG--- tdbD11440|Borrelia_garinii_PBi|290434|Trp|CCA AGGTCAGTAGTTCCAAC-GGT-AGAACGACAGTCTCCAAAACTGTATGCTGGGGGTTCGAATCCCTCCTGACCTG--- tdbD11398|Bradyrhizobium_japonicum_USDA_110|224911|Trp|CCA AGGAGTGTAGCTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGCCACTCCTGCCA tdbD11329|Brucella_melitensis_16M|224914|Trp|CCA AGGGGTATAGCTCAGTT-GGT-AGAGCGACGGTCTCCAAAACCGTAGGTCGCGGGTTCGAACCCTGCTGCCCCTGCCA tdbD11387|Brucella_suis_1330|204722|Trp|CCA AGGGGTATAGCTCAGTT-GGT-AGAGCGACGGTCTCCAAAACCGTAGGTCGCGGGTTCGAACCCTGCTGCCCCTGCCA tdbD11291|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Trp|CCA AGGGGTGTAGTTCAATTTGGT-AGAGCATCGGTCTCCAAAACCGAAAGTTGTAGGTTCAAATCCTTCCACCCCTG--- tdbD11417|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Trp|CCA AGGGATGTAGCTCAATT-GGT-AGAGTATCGGTCTCCAAAACCGAATGTTGGGGGTTCAATTCCCTCCATCCCTG--- tdbD11372|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Trp|CCA AGGGGTGTAGTTCAATTTGGT-AGAGCATCGGTCTCCAAAACCGAAAGTTGTAGGTTCAAGTCCTTCCACCCCTGCCA tdbD11307|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Trp|CCA AGGGCAATAGCTCCAAC-GGT-AGAGCGCCGGATTCCAAATCCGATGGTTGGGGGTTCGAATCCCTCTTGCCCTGCCA tdbD11466|Candidatus_Blochmannia_floridanus|203907|Trp|CCA AGGGGTGTAGTTCAAT--GGT-AGAATATCGGTCTCCAAAACCGAGGGTTGGGAGTTCAAGTCTCTTCACCCCTG--- tdbD11434|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Trp|CCA GGGTGTGTAGCTCAGCT-GGT-AGAGCAACGGTCTCCAAAGCCGTCGGTCGGGGGTTCGAATCCCTCCGCACTCG--- tdbD11308|Caulobacter_crescentus_CB15|190650|Trp|CCA AGGAGTGTAGCTCAGCT-GGT-AGAGCATCGGTCTCCAAAACCGAGGGCCGGGGGTTCGAGTCCCTCCACTCCTGCCA tdbD11324|Chlamydia_muridarum_Nigg|243161|Trp|CCA GGGTGTGTAGCTTAGAT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGAATCCCTCCGCACTCG--- tdbD11288|Chlamydia_trachomatis_D/UW-3/CX|272561|Trp|CCA GGGTGTGTAGCTTAGAT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGAATCCCTCCGCACTCG--- tdbD11286|Chlamydophila_pneumoniae_AR39|115711|Trp|CCA GGGTGTGTAGCTTAGCT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGATTCCCTTCGCACCCG--- tdbD11287|Chlamydophila_pneumoniae_CWL029|115713|Trp|CCA GGGTGTGTAGCTTAGCT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGATTCCCTTCGCACCCG--- tdbD11299|Chlamydophila_pneumoniae_J138|138677|Trp|CCA GGGTGTGTAGCTTAGCT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGATTCCCTTCGCACCCG--- tdbD11369|Chlorobium_tepidum_TLS|194439|Trp|CCA ACGTCAGTAGCTTAATT-GGT-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGACGTA--- tdbD11327|Clostridium_acetobutylicum_ATCC_824|272562|Trp|CCA AGGGGTATAGCTCAATT-GGT-AGAGTAACGGTCTCCAAAACCGTCGGTTGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11323|Clostridium_perfringens_str._13|195102|Trp|CCA AGGGGTATGGCTCAATT-GGT-AGAGTAGTGGTCTCCAAAACCATTGGTTGTGGGTTCGAGTCCTACTGCCCCTGCCA tdbD11399|Clostridium_tetani_E88|212717|Trp|CCA AGGGGTATAGCTCAATT-GGT-AGAGTAGCGGTCTCCAAAACCGTTGGTTCCGGGTTCAAGTCCTCGTGCCCCTGCCA tdbD11431|Corynebacterium_diphtheriae_NCTC_13129|257309|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG--- tdbD11388|Corynebacterium_efficiens_YS-314|196164|Trp|CCA AGGGGCGTAGCTCAATT-GGC-AGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG--- tdbD11374|Corynebacterium_glutamicum_ATCC_13032|196627|Trp|CCA AGGGGCGTAGCTCAATT-GGC-AGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCGATTCCTGTCGCCCCTG--- tdbD11413|Coxiella_burnetii_RSA_493|227377|Trp|CCA AGGCCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGATTCCCTCCTGGCCTGCCA tdbD11309|Deinococcus_radiodurans_R1|243230|Trp|CCA GGGTTCTTAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGTAGGTCGAGGGTTCAAGTCCTTCAGGGCCCGCCA tdbD11453|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Trp|CCA AGGGCAGTAGCTCTAAC-GGCTAGAGCGCCGGTCTCCAAAACCGGATGTTGGGGGTTCGAATCCCTCCTGCCCTGCCA tdbD11403|Enterococcus_faecalis_V583|226185|Trp|CCA TGGAGCATAGCTTAATC-GGC-AGAGCAGCGGTCTCCAAAACCGTTGG-TATAGGTTCGAGTCCTATTGTTCCAG--- tdbD11418|Escherichia_coli_CFT073|199310|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11300|Escherichia_coli_K12|83333|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11301|Escherichia_coli_O157:H7|83334|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11302|Escherichia_coli_O157:H7_EDL933|155864|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11370|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Trp|CCA AGGTCAATGGCTCAATT-GGT-AGAGCATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGTCCCTCTTGACCTGCCA tdbD11441|Geobacter_sulfurreducens_PCA|243231|Trp|CCA AGGCCAGTAGCTCTAAC-GGCTAGAGCGCCGGTCTCCAAAACCGGATGTTGGGGGTTCGAATCCCTCCTGGCCTGCCA tdbD11305|Haemophilus_influenzae_Rd_KW20|71421|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGCCTCTCCGCCCCTGCCA tdbD11303|Helicobacter_pylori_26695|85962|Trp|CCA AGGTCAGTAGCTCCAAT-GGT-AGAGCGTCGGTCTCCAAAACCGGTTGTTGGGGGTTCGAGTCCCTCCTGGCCTGCCA tdbD11304|Helicobacter_pylori_J99|85963|Trp|CCA AGGTCAGTAGCTCCAAT-GGT-AGAGCGTCGGTCTCCAAAACCGGTTGTTGGGGGTTCGAGTCCCTCCTGGCCTGCCA tdbD11442|Lactobacillus_johnsonii_NCC_533|257314|Trp|CCA AGGGATATCGTATAAA--GGT-AGTACATCGGTCTCCAAAACCGCTAG-TGTGGGTTCAATTCCTACTATCCCTG--- tdbD11405|Lactobacillus_plantarum_WCFS1|220668|Trp|CCA GCAGATATGATCTAATT-GGC-AAGATGGCGGTCTCCAAAACCGTCTA-TGTTGGTTCAAATCCAGCTATCTGTG--- tdbD11443|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Trp|CCA AGGGCGGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTGTCCGCCCTG--- tdbD11389|Leptospira_interrogans_serovar_Lai_str._56601|189518|Trp|CCA AGGCCTGTAGTTTAGT--GGT-AGAACTAGGATCTCCAAAGTCCTTGG-TGGGAGTTCGATTCTCTCCGGGCCTG--- tdbD11320|Listeria_innocua_Clip11262|272626|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11321|Listeria_monocytogenes_EGD-e|169963|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11454|Listeria_monocytogenes_str._4b_F2365|265669|Trp|CCA AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11455|Mesoplasma_florum_L1|265311|Trp|CCA AGAGGTATAGTTCAGAT-GGT-AGAACATCGGTCTCCAAAACCGAGTGTCACGAGTTCGAGTCTTGTTACCTCTGCCA tdbD11330|Mesorhizobium_loti_MAFF303099|266835|Trp|CCA ACGGGCATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGTAGGTTCGAGCCCTGCTGCCCGTGCCA tdbD11411|Mycobacterium_bovis_AF2122/97|233413|Trp|CCA AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG--- tdbD11297|Mycobacterium_leprae_TN|272631|Trp|CCA AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAATCCTGTCGCCCCTG--- tdbD11292|Mycobacterium_tuberculosis_CDC1551|83331|Trp|CCA AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG--- tdbD11433|Mycobacterium_tuberculosis_H37Rv|83332|Trp|CCA AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG--- tdbD3274|Mycoplasma_capricolum|2095|Trp|TCA AGGGGCATAGTTCAGTA-GGT-AGAACATCGGTCTTCAAAACCGAGTGTCACGAGTTCGAGTCTTGTTGCCCCTGCCA tdbD11410|Mycoplasma_gallisepticum_R|233150|Trp|CCA AGGGGTGTAGTTCAAT--GGT-AGAACTAGGGTCTCCAAAACCTTCGA-TGCGGGTTCGATTCCTGTCACCCCTGCCA tdbD11310|Mycoplasma_genitalium_G37|243273|Trp|CCA GGGGGTGTAGTTTAGT--GGT-AGAACAACAGTCTCCAAAACTGTCTG-TGTGGGTTCGATTCCTTCCACCCCCGCCA tdbD11311|Mycoplasma_pneumoniae_M129|272634|Trp|CCA GGGGGTGTAGTTTAGT--GGC-AGAACAACAGTCTCCAAAACTGTCTG-TGTGGGTTCGATTCCTTCCACCCCCGCCA tdbD11335|Mycoplasma_pulmonis_UAB_CTIP|272635|Trp|CCA GGGAGATTAGTATAAT--GGT-AGTACTACAGATTCCAAACCTGTTTG-CGTGGGTTCGATTCCTACATCTCTCGCCA tdbD11293|Neisseria_meningitidis_MC58|122586|Trp|CCA AGGCCAATAGCTCAATT-GGT-AGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGACCCTCTTGGCCTGCCA tdbD11294|Neisseria_meningitidis_Z2491|122587|Trp|CCA AGGCCAATAGCTCAATT-GGT-AGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGACCCTCTTGGCCTGCCA tdbD11423|Nitrosomonas_europaea_ATCC_19718|228410|Trp|CCA AGGCCAGTAGCTCAATT-GGC-AGAGCGTCGGTCTCCAAAACCGAAGGTTGGGGGTTCGATGCCCTCCTGGCCTGCCA tdbD11334|Nostoc_sp._PCC_7120|103690|Trp|CCA GCGCTCTTAGTTCAGTT-GGT-AGAACGCAGGTCTCCAAAACCTGATGTCGGGGGTTCAAGTCCTCCAGGGCGCG--- tdbD11390|Oceanobacillus_iheyensis_HTE831|221109|Trp|CCA AGGGGTATAGTTTAAT--GGT-AAAACGAAGGTCTCCAAAACCTTTGA-TGTGGGTTCGATTCCTACTACCCCTGCCA tdbD11432|Onion_yellows_phytoplasma_OY-M|262768|Trp|CCA AGGGATATGATGTCAAT-GGT-AGCATAACGGTCTCCAAAACCGCTCG-TTCGGGTTCGAATCCTGATATCCCTGCCA tdbD11312|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGCCTCTCCGCCCCTGCCA tdbD11435|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11444|Porphyromonas_gingivalis_W83|242619|Trp|CCA ACGGGTTTAGCTCAGTT-GGT-AGAGCATTGGTCTCCAAAACCAAGTGTCGGGAGTTCGAGTCTCTCAACCCGTG--- tdbD11456|Propionibacterium_acnes_KPA171202|267747|Trp|CCA AGGGCACTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCAAGTCCCTCGTGCCCTG--- tdbD11314|Pseudomonas_aeruginosa_PAO1|208964|Trp|CCA AGGCCAGTAGCTCAATT-GGC-AGAGCGGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGATTCCCTCCTGGCCTGCCA tdbD11426|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Trp|CCA AGGTCAGTAGCTCAATT-GGC-AGAGCGACGGTCTCCAAAACCGTAGGTTGGGGGTTCGATTCCCTCCTGACCTGCCA tdbD11333|Ralstonia_solanacearum_GMI1000|267608|Trp|CCA AGGGGTATAGCTCAACT-GGC-AGAGCGTCGGTCTCCAAAACCGAAGGTTGGGGGTTCGATTCCCTCTGCCCCTGCCA tdbD11421|Rhodopirellula_baltica_SH_1|243090|Trp|CCA AGGGGCGTAGCTCAATT-GGC-AGAGCACTGGTTTCCAAAACCAGCGGTTGTGAGTTCGACTCTCGCCGCCCCTG--- tdbD11436|Rhodopseudomonas_palustris_CGA009|258594|Trp|CCA AGGAGTGTAGCTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGCCACTCCTGCCA tdbD11328|Rickettsia_conorii_str._Malish_7|272944|Trp|CCA AGGAGTGTAGCTCAATT-GGT-AGAGCGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATACCTGTCGCTCCTGCCA tdbD11373|Rickettsia_prowazekii_str._Madrid_E|272947|Trp|CCA AGGAGTGTAGCTCAATT-GGT-AGAGCGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATTCCTGTCGCTCCTGCCA tdbD11445|Rickettsia_typhi_str._Wilmington|257363|Trp|CCA AGGAGTGTAGCTCAATT-GGT-AGAGTGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATTCCTGTCGCTCCTGCCA tdbD11337|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11420|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11332|Salmonella_typhimurium_LT2|99287|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11392|Shewanella_oneidensis_MR-1|211586|Trp|CCA AGGGGTGTAGTTCCAATTGGT-AGAACAGCGGTCTCCAAAACCGATGGTTGCGGGTTCGAGTCCTGCCACCCCTGCCA tdbD11393|Shigella_flexneri_2a_str._301|198214|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTG--- tdbD11338|Sinorhizobium_meliloti_1021|266834|Trp|CCA AGGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGGGGGTTCGAGCCCCTCTGCCCCTGCCA tdbD3281|Spiroplasma_citri|2133|Trp|TCA AGGGGTATAGTTCAATC-GGT-AGAACACCGGACTTCAAATCCGGGTGTTGTGGGTTCAAGTCCTGCTACCCCTGCCA tdbD11437|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Trp|CCA AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11375|Staphylococcus_aureus_subsp._aureus_MW2|196620|Trp|CCA AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11296|Staphylococcus_aureus_subsp._aureus_N315|158879|Trp|CCA AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11406|Staphylococcus_epidermidis_ATCC_12228|176280|Trp|CCA AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGA-TGTGGGTTCGATTCCTACTGCCCCTGCCA tdbD11395|Streptococcus_agalactiae_2603V/R|208435|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG--- tdbD11376|Streptococcus_agalactiae_NEM316|211110|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG--- tdbD11396|Streptococcus_mutans_UA159|210007|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCAATTCCTACTGCCCGTG--- tdbD11326|Streptococcus_pneumoniae_TIGR4|170187|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCAATTCCTACTGCCCGTG--- tdbD11325|Streptococcus_pyogenes_M1_GAS|160490|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG--- tdbD11377|Streptococcus_pyogenes_MGAS315|198466|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG--- tdbD11412|Streptococcus_pyogenes_SSI-1|193567|Trp|CCA ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG--- tdbD11419|Streptomyces_avermitilis_MA-4680|227882|Trp|CCA AGGGTCGTAGCTCAATT-GGT-AGAGCACTGGTCTCCAAAACCAGCGGTTGGGGGTTCAAGTCCCTCCGGCCCTG--- tdbD11391|Streptomyces_coelicolor_A3(2)|100226|Trp|CCA AGGGTCGTAGCTCAATT-GGT-AGAGCACTGGTCTCCAAAACCAGCGGTTGGGGGTTCAAGTCCCTCCGGCCCTG--- tdbD3285|Streptomyces_griseus|1911|Trp|CCA AGGGTCGTAGCTCAATT-GGT-AGAGCACTGGTCTCCAAAACCAGCGGTTGGGGGTTCAAGTCCCTCCGGCCCTG--- tdbD11446|Symbiobacterium_thermophilum_IAM_14863|292459|Trp|CCA AGGGGCATAGCTCAATT-GGT-AGAGCAACGGTCTCCAAAACCGTAGGTTGTGGGTTCGAGTCCTACTGCCCCTGCCA tdbD11315|Synechocystis_sp._PCC_6803|1148|Trp|CCA GCGTCCTTAGTTCAGTT-GGT-AGAACGCAGGTCTCCAAAACCTGATGTCGGGGGTTCAAGTCCTCCAGGGCGCG--- tdbD11380|Thermoanaerobacter_tengcongensis_MB4|273068|Trp|CCA AGGGGAGTAGCTCAACT-GGT-AGAGCAACGGTCTCCAAAACCGTGGGCTGCGGGTTCAAGTCCTGTCTCCCCTGCCA tdbD11378|Thermosynechococcus_elongatus_BP-1|197221|Trp|CCA GCGTCCTTAGTTCAGTT-GGT-AGAACGTCGGTCTCCAAAACCGGATGTCGGGGGTTCGAGTCCTCCAGGGCGCG--- tdbD11316|Thermotoga_maritima_MSB8|243274|Trp|CCA AGGGCCGTAGCTCAACT-GGT-AGAGCGCCGGTCTCCAAAACCGGTGGTTGCGGGTTCGAGTCCTGCCGGCCCTGCCA tdbD11457|Thermus_thermophilus_HB27|262724|Trp|CCA -GGCCGTTAGCTCAACT-GGC-AGAGCACCGGTCTCCAAAACCGGGGGTTGGAGGTTCGAGTCCTTCACGGCCCGCCA tdbD11458|Treponema_denticola_ATCC_35405|243275|Trp|CCA AGGTCAGTAGCTCCAAT-GGT-AGAGCGTCGGTCTCCAAAACCGAATGTTGAGGGTTCGAGTCCTTCCTGGCCTG--- tdbD11313|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Trp|CCA GGGTCAGTAGCTCTAAT-GGC-AGAGCGTCGGTCTCCAAAACCGAATGTTGAAGGTTCGAGTCCTTCCTGGCCTG--- tdbD11407|Tropheryma_whipplei_str._Twist|203267|Trp|CCA AGGGCGGTGGCTCAATT-GGT-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCCGCCCTG--- tdbD11408|Tropheryma_whipplei_TW08/27|218496|Trp|CCA AGGGCGGTGGCTCAATT-GGT-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCCGCCCTG--- tdbD11298|Ureaplasma_parvum_serovar_3|38504|Trp|CCA AAGGGTATAGTTCAATT-GGT-AGAACAGCAGACTCCAAATCTGCGTGTTGCGGGTTCGAGTCCTGTTACCCTTGCCA tdbD11295|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Trp|CCA AGGGGTGTAGCTCCAATTGGC-AGAGCAGCGGATTCCAAATCCGCGTGTTGGGAGTTCGAATCTCTCCACCCCTGCCA tdbD11459|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Trp|CCA AGGAGTGTAGCTCAATT-GGT-AGAGCGCTGGTCTCCAAAACCAGAGGTTGTAGGTTCAATTCCTATCGCTCCTG--- tdbD11382|Xanthomonas_axonopodis_pv._citri_str._306|190486|Trp|CCA ACGCCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGTGCCA tdbD11381|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Trp|CCA ACGCCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGTGCCA tdbD11317|Xylella_fastidiosa_9a5c|160492|Trp|CCA GCGTCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGCGCCA tdbD11409|Xylella_fastidiosa_Temecula1|183190|Trp|CCA GCGTCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGCGCCA tdbD11448|Yersinia_pestis_biovar_Microtus_str._91001|229193|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11331|Yersinia_pestis_CO92|214092|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11384|Yersinia_pestis_KIM|187410|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA tdbD11449|Yersinia_pseudotuberculosis_IP_32953|273123|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA #=GC SS_cons (((((((..((((..........)))).(((((.......))))).....(((((.......)))))))))))).... #=GC SN 0000000..1111..........1111.22222.......22222.....33333.......333330000000.... #=GF CS 78 columns, 21 paired, 20 covariant; 4 stems //