# STOCKHOLM 1.0 BACTERIAL Glu #=GC CS .2533443..2232...........2322.46433.......33464.....45323.......323543443352.... #=GC BP .+++++++..++++...........++++.+++++.......+++++.....+++++.......++++++++++++.... tdbD525|Acholeplasma_laidlawii|2148|Glu|TTC -GGCCCGTTGGAGAAAC--GGTT-AACTCACATGCCTTTCACGCATGCATTCACGGGTTCGAATCCCGTACGGGTCACCA tdbD4871|Acinetobacter_sp._ADP1|62977|Glu|TTC -GTCCCTATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTAGGGACGCCA tdbD542|Aeromonas_hydrophila|644|Glu|TTC -GTCCCCTTCGCTAGA---GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4664|Agrobacterium_tumefaciens_str._C58|176299|Glu|TTC -GCGCCCTTCGTCTATC--GGTT-AGGACGTCAGATTTTCATTCTGAAAA-GAGGGGTTCGACTCCCCTAGGGCGTGCCA tdbD4641|Aquifex_aeolicus_VF5|224324|Glu|TTC -GCCCCCGTCGTCTAGCCTGGCCTAGGACGCCGGCCTTTCACGCCGGAAA-CGCGGGTTCAAATCCCGCCGGGGGTGCCA tdbD4872|Bacillus_anthracis_str._A2012|191218|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4813|Bacillus_anthracis_str._Ames|198094|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4835|Bacillus_anthracis_str._Sterne|260799|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4858|Bacillus_cereus_ATCC_10987|222523|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4799|Bacillus_cereus_ATCC_14579|226900|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4772|Bacillus_halodurans_C-125|272558|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD540|Bacillus_sp._PS3|2334|Glu|TTC -GGCCCTGTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAA-TCCGTACGGGTCA--- tdbD4602|Bacillus_subtilis_subsp._subtilis_str._168|224308|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4873|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4810|Bacteroides_thetaiotaomicron_VPI-5482|226186|Glu|CTC -GGTGGGTTCGTCTAAC--GGTT-AGGACACATGCCTCTCACGCATGTAA-TACGAGTTCGATTCTCGTACCCACTA--- tdbD4816|Bartonella_henselae_str._Houston-1|283166|Glu|TTC -GCGCCCATCGTCTAGC--GGTC-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA tdbD4877|Bartonella_quintana_str._Toulouse|283165|Glu|TTC -GCGCCCATCGTCTAGC--GGTT-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA tdbD4817|Bdellovibrio_bacteriovorus_HD100|264462|Glu|TTC -GTTCCCATCGTCTAGG--GGCCTAGGACACCTCCCTTTCACGGAGGATA-CAGGGGTTCAAATCCCCTTGGGAACGCCA tdbD4755|Bifidobacterium_longum_NCC2705|206672|Glu|TTC -GCCCCCATCGTCTAAC--GGTT-AGGACACCAGACTTTCAATCTGACAA-CGAGAGTTCGACTCTCTCTGGGGGTA--- tdbD4626|Borrelia_burgdorferi_B31|224326|Glu|TTC -GTCCTCTTCGTCTATC--GGTT-AGGACTCCAGGTTTTCATCCTGGCAA-GAGGGGTTCGATTCCCCTAGAGGATG--- tdbD4775|Bradyrhizobium_japonicum_USDA_110|224911|Glu|CTC -GCTCCCTTCGTCTAGC--GGTT-AGGACGCGGCCCTCTCAAGGCTGAAA-CAGGGGTTCGATTCCCCTAGGGAGCGCCA tdbD4654|Brucella_melitensis_16M|224914|Glu|TTC -GCGCCCATCGTCTAGC--GGTT-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA tdbD4757|Brucella_suis_1330|204722|Glu|TTC -GCGCCCATCGTCTAGC--GGTT-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA tdbD4603|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Glu|TTC -GTCCCCTTCGTCTAGA--GGTCTAGGACATCGCCCTTTCACGGCGGCAA-CAGGGGTTCAAATCCCCTAGGGGACG--- tdbD4801|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Glu|TTC -GTCCCCTTCGTCTAGA--GGACTAGGACATCGCCCTTTCACGGCGATAA-CAGGGGTTCAAATCCCCTAGGGGACA--- tdbD4733|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Glu|TTC -GTCCCCTTCGTCTAGA--GGTT-AGGACATCGCCCTTTCACGGCGGCAA-CAGGGGTTCAAATCCCCTAGGGGACG--- tdbD4627|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Glu|TTC -GGCCCATTCGTCTAGC--GGTT-AGGACATCGCCCTTTCACGGCGGTAA-CACGAGTTCGAGTCTCGTATGGGTCACCA tdbD4878|Candidatus_Blochmannia_floridanus|203907|Glu|TTC -GTCCCCTTCGTCTAGA--GGTT-AGGACACTGCCCTTTCACGGCGGCAA-CAGGGGTTCGAAACCCCTAGGGGACA--- tdbD4823|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Glu|TTC -GGCCCCATCGTCTAGCCAGGTCTAGGACACCGGATTTTCATTCCGATAA-CAGGGGTTCGAATCCCCTTGGGGTCA--- tdbD4628|Caulobacter_crescentus_CB15|190650|Glu|TTC -GGTCCCTTCGTCTATC--GGTT-AGGACGCCAGATTTTCAATCTGGAGA-GAGGGGTTCGACTCCCCTAGGGACTGCCA tdbD4647|Chlamydia_muridarum_Nigg|243161|Glu|TTC -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA--- tdbD4600|Chlamydia_trachomatis_D/UW-3/CX|272561|Glu|TTC -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA--- tdbD4598|Chlamydophila_pneumoniae_AR39|115711|Glu|TTC -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA--- tdbD4599|Chlamydophila_pneumoniae_CWL029|115713|Glu|TTC -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA--- tdbD4616|Chlamydophila_pneumoniae_J138|138677|Glu|TTC -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA--- tdbD4729|Chlorobium_tepidum_TLS|194439|Glu|TTC -GGCCCCATCGACTAGT--GGTT-AGGTCATCACCCTTTCAAGGTGGTAG-CACGGGTTCGAATCCCGTTGGGGTCA--- tdbD4651|Clostridium_acetobutylicum_ATCC_824|272562|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCACCCTTTCACGGTGGTAA-CATGGGTTCGATTCCCGTACGGGTCA--- tdbD4646|Clostridium_perfringens_str._13|195102|Glu|TTC -GGCCCCTTGGTCAAGC--GGTT-AAGACACCACCCTTTCACGGTGGTAA-CAGGGGTTCGATTCCCCTAGGGGTCACCA tdbD4776|Clostridium_tetani_E88|212717|Glu|TTC -GGCCCCTTGGTCAAGT--GGTT-AAGACACCACCCTTTCACGGTGGTAA-CATGGGTTCGAATCCCGTAGGGGTCACCA tdbD4818|Corynebacterium_diphtheriae_NCTC_13129|257309|Glu|CTC -GCCCCGTTCGTCTAGC--GGCCTAGGACGTCGGCCTCTCACGCCGGTAA-CACGGGTTCAAATCCCGTACGGGGTA--- tdbD4760|Corynebacterium_efficiens_YS-314|196164|Glu|TTC -GCTCCCATCGTCTAGG--GGCCTAGGACACCGCCCTTTCACGGCGGCGA-CACGGGTTCGAATCCCGTTGGGAGTA--- tdbD4736|Corynebacterium_glutamicum_ATCC_13032|196627|Glu|CTC -GCCCCGTTCGTCTAGT--GGCCTAGGACGCCGGCCTCTCACGCCGGTAA-CACGGGTTCAAATCCCGTACGGGGTA--- tdbD4797|Coxiella_burnetii_RSA_493|227377|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA tdbD4629|Deinococcus_radiodurans_R1|243230|Glu|TTC -GGCCCCATCGTCTAAC--GGTT-AGGACACTACCCTTTCAAGGTAGCGA-TACGGGTTCGAATCCCGTTGGGGTCACCA tdbD4859|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Glu|TTC -GTTCCCATCGTCTAGCC-GGCCTAGGACAACGGCCTTTCACGCCGTCGA-CAGGGGTTCGAATCCCCTTGGGAACGCCA tdbD4778|Enterococcus_faecalis_V583|226185|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTACGGGTCA--- tdbD4802|Escherichia_coli_CFT073|199310|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4617|Escherichia_coli_K12|83333|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4618|Escherichia_coli_O157:H7|83334|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4619|Escherichia_coli_O157:H7_EDL933|155864|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4730|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Glu|TTC -GCCCCGTTCGTTCAGT--GGTT-AGGACATCAGATTTTCACTCTGGAAA-CAGGGGTTCAATTCCCCTACGGGGTACCA tdbD4836|Geobacter_sulfurreducens_PCA|243231|Glu|TTC -GGTCCCATCGTCTAGT--GGTT-AGGACACCGGCCTTTCACGTCGGTAA-CAGGGGTTCAAGTCCCCTTGGGATCACCA tdbD533|Haemophilus_ducreyi|730|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTGGGGACGCCA tdbD4625|Haemophilus_influenzae_Rd_KW20|71421|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTGGGGACGCCA tdbD4793|Helicobacter_hepaticus_ATCC_51449|235279|Glu|TTC -GACCCTTTCATCTAGCT-GGCCAAGGATATCACCCTTTCTCGGTGAAAA-CGGAAGTTCAAATCTTTCAAGGGTCGCCA tdbD4622|Helicobacter_pylori_26695|85962|Glu|TTC -GGCTCCTTCATCTAGT--GGTT-AGGATACCACCCTTTCACGGTGGTTA-CAGGGGTTCAAATCCCCTAGGAGTCACCA tdbD4624|Helicobacter_pylori_J99|85963|Glu|TTC -GGCTCCTTCATCTAGT--GGTT-AGGATACCACCCTTTCACGGTGGTTA-CAGGGGTTCAAATCCCCTAGGAGTCACCA tdbD534|Lactobacillus_delbrueckii_subsp._bulgaricus|1585|Glu|TTC -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CATGGGTTCAAATCCCGTACGGGTCA--- tdbD4842|Lactobacillus_johnsonii_NCC_533|257314|Glu|TTC -GACCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CATGAGTTCAAATCTCGTACGGGTCA--- tdbD4779|Lactobacillus_plantarum_WCFS1|220668|Glu|TTC -GACCCCTTGGTCAAGT--GGTTTAAGACACTGCCCTTTCACGGCAGTAA-CATGGGTTCGAATCCCGTAGGGGTCA--- tdbD537|Lactococcus_lactis|1358|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4844|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Glu|TTC -GGCCCCATCGTTTAGT--GGCCTAGGACACCGCCCTTTCACGGCGGCAG-CACGGGTTCGAATCCCGTTGGGGTCA--- tdbD4761|Leptospira_interrogans_serovar_Lai_str._56601|189518|Glu|TTC -GCCGCCATCGTCTAGT--GGTT-AGGACACAAGATTTTCATTCTTGGAA-CAGGGGTTCAATTCCCCTTGGCGGTACCA tdbD4642|Listeria_innocua_Clip11262|272626|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4645|Listeria_monocytogenes_EGD-e|169963|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4861|Listeria_monocytogenes_str._4b_F2365|265669|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4862|Mesoplasma_florum_L1|265311|Glu|TTC -GGCCTGTTGGTGAAGC--GGTT-AACACACACGGTTTTCATCCGTGGACACACGGGTTCGAACCCCGTACAGGCTACCA tdbD4655|Mesorhizobium_loti_MAFF303099|266835|Glu|TTC -GCGCCCATCGTCTAGC--GGTT-AGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA tdbD4794|Mycobacterium_bovis_AF2122/97|233413|Glu|TTC -GCCCCCTTCGTCTAGAC-GGCCTAGGACGCCGCCCTTTCAAGGCGGTAA-CGCGGGTTCGAATCCCGTAGGGGGTA--- tdbD4614|Mycobacterium_leprae_TN|272631|Glu|TTC -GCCCCCTTCGTCTAGT--GGCCTAGGACGCCGCCCTTTCAAGGCGGTAG-CGCGGGTTCGAATCCCGTAGGGGGTA--- tdbD4605|Mycobacterium_tuberculosis_CDC1551|83331|Glu|TTC -GCCCCCTTCGTCTAGAC-GGCCTAGGACGCCGCCCTTTCAAGGCGGTAA-CGCGGGTTCGAATCCCGTAGGGGGTA--- tdbD4821|Mycobacterium_tuberculosis_H37Rv|83332|Glu|TTC -GCCCCCTTCGTCTAGAC-GGCCTAGGACGCCGCCCTTTCAAGGCGGTAA-CGCGGGTTCGAATCCCGTAGGGGGTA--- tdbD520|Mycoplasma_capricolum|2095|Glu|TTC -GGCCTGTTGGTGAAGC--GGTT-AACACACACGGTTTTCATCCGTGGACACACGGGTTCGAACCCCGTACAGGCTACCA tdbD4792|Mycoplasma_gallisepticum_R|233150|Glu|TTC -GGCGCGTTGGTGAAGT--GACTTAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACGCGTCACCA tdbD4630|Mycoplasma_genitalium_G37|243273|Glu|TTC -GGCGCGTTGGTGAAGA--GACTTAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACGCGTCACCA tdbD522|Mycoplasma_mycoides|2102|Glu|TTC -GGCCTGTTGGTGAAGC--GGTT-AACACACACGGTTTTCATCCGTGGACACACGGGTTCGAACCCCGTACAGGCTACCA tdbD4631|Mycoplasma_pneumoniae_M129|272634|Glu|TTC -GGCGCGTTGGTGAAGA--GACTTAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACGCGTCACCA tdbD4663|Mycoplasma_pulmonis_UAB_CTIP|272635|Glu|TTC -GGCCTATTGGTGAAGA--GGTT-AACACACATGGTTTTCATCCATGCATGCGCGGGTTCGAATCCCGCATAGGTCACCA tdbD4607|Neisseria_meningitidis_MC58|122586|Glu|TTC -GCGCCCATCGTCTAGC--GGTT-AGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGATTCCCCGTGGGCGTGCCA tdbD4609|Neisseria_meningitidis_Z2491|122587|Glu|TTC -GCGCCCATCGTCTAGC--GGTT-AGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGATTCCCCGTGGGCGTGCCA tdbD4809|Nitrosomonas_europaea_ATCC_19718|228410|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACACCACCCTTTCACGGTGGGTA-CAGGGGTTCGAATCCCCTTGGGGACGCCA tdbD4662|Nostoc_sp._PCC_7120|103690|Glu|TTC -GCCCCCATCGTCTAGA--GGCCTAGGACACCTCCCTTTCACGGAGGTAA-CGGGGATTCGAATTCCCCTGGGGGTA--- tdbD4763|Oceanobacillus_iheyensis_HTE831|221109|Glu|TTC -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA--- tdbD4820|Onion_yellows_phytoplasma_OY-M|262768|Glu|TTC -GGCCCGTTGGAGAAAC--GGTT-AACTCACATGCCTTTCACGCATGCATTCACGGGTTCAAATCCCGTACGGGTCACCA tdbD4632|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTGGGGACGCCA tdbD4824|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD532|Plesiomonas_shigelloides|703|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACA--- tdbD4846|Porphyromonas_gingivalis_W83|242619|Glu|TTC -GGCCCATTCGTCTATC--GGTT-AGGACGCAAGATTTTCATTCTTGAAA-GAGGGGTTCGATTCCCCTATGGGCTA--- tdbD4864|Propionibacterium_acnes_KPA171202|267747|Glu|TTC -GTCCCGGTCGTCCAGA--GGCCTAGGACACCGCCCTTTCAAGGCGGCAA-CGCGGGTTCGAATCCCGTCCGGGATA--- tdbD4635|Pseudomonas_aeruginosa_PAO1|208964|Glu|TTC -GTCCCCTTCGTCTAGT--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAGTCCCCTAGGGGACGCCA tdbD4812|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Glu|TTC -GTCCCCTTCGTCTAGT--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAGTCCCCTAGGGGACGCCA tdbD4661|Ralstonia_solanacearum_GMI1000|267608|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCTAGGACATCACCCTTTCACGGTGAGTA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4807|Rhodopirellula_baltica_SH_1|243090|Glu|TTC -GGCCCCTTCGTCTAGC--GGTCTAGGACATCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGGGTCA--- tdbD4825|Rhodopseudomonas_palustris_CGA009|258594|Glu|CTC -GCTCCCTTCGTCTAGC--GGTT-AGGACGCGGCCCTCTCAAGGCTGAAA-CAGGGGTTCGATTCCCCTAGGGAGCGCCA tdbD4652|Rickettsia_conorii_str._Malish_7|272944|Glu|TTC -GGCCCCTTCGTCTAGT--GGTT-AGGACACCACCCTTTCACGGTGGGAA-CACGGGTTCGAGTCCCGTAGGGGTCACCA tdbD4734|Rickettsia_prowazekii_str._Madrid_E|272947|Glu|TTC -GGCCCCTTCGTCTAGC--GGTT-AGGACACCACCCTTTCACGGTGGGAA-CACGGGTTCAAGTCCCGTAGGGGTCACCA tdbD4847|Rickettsia_typhi_str._Wilmington|257363|Glu|TTC -GGCCCCTTCGTCTAGC--GGTT-AGGACACCACCCTTTCACGGTGGCAA-CACGGGTTCAAGTCCCGTAGGGGTCACCA tdbD4665|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4805|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD544|Salmonella_enteritidis|592|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4660|Salmonella_typhimurium_LT2|99287|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4767|Shewanella_oneidensis_MR-1|211586|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGATACCA tdbD4768|Shigella_flexneri_2a_str._301|198214|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA tdbD4666|Sinorhizobium_meliloti_1021|266834|Glu|TTC -GCGCCCATCGTCTAGC--GGTCTAGGACGCCGCCCTTTCACGGCGGAAA-CACGGGTTCGATTCCCGTTGGGCGTGCCA tdbD4828|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Glu|TTC -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA--- tdbD4739|Staphylococcus_aureus_subsp._aureus_MW2|196620|Glu|TTC -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA--- tdbD4611|Staphylococcus_aureus_subsp._aureus_N315|158879|Glu|TTC -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA--- tdbD4783|Staphylococcus_epidermidis_ATCC_12228|176280|Glu|TTC -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA--- tdbD4769|Streptococcus_agalactiae_2603V/R|208435|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4740|Streptococcus_agalactiae_NEM316|211110|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4771|Streptococcus_mutans_UA159|210007|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4649|Streptococcus_pneumoniae_TIGR4|170187|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4648|Streptococcus_pyogenes_M1_GAS|160490|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4741|Streptococcus_pyogenes_MGAS315|198466|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4796|Streptococcus_pyogenes_SSI-1|193567|Glu|TTC -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA--- tdbD4804|Streptomyces_avermitilis_MA-4680|227882|Glu|TTC -GCCCTCATCGTCTAGC--GGCCTAGGACGCCGCCCTTTCAAGGCGGTAG-CACGGGTTCGAATCCCGTTGGGGGCA--- tdbD4764|Streptomyces_coelicolor_A3(2)|100226|Glu|TTC -GCCCTCATCGTCTAGC--GGCCTAGGACGCCGCCCTTTCAAGGCGGTAG-CACGGGTTCGAATCCCGTTGGGGGCA--- tdbD530|Streptomyces_lividans|1916|Glu|CTC -GCCCCCGTTGTGTAGC--GGCCTAGCACGCCGCCCTCTCAAGGCGGTAG-CGCCGGTTCGAATCCGGTCGGGGGTA--- tdbD529|Streptomyces_rimosus|1927|Glu|CTC -GCCCCCGTTGTGTAGC--GGCCTAGCACGCCGCCCTCTCAAGGCGGTAG-CGCCGGTTCGAATCCGGTCGGGGGTA--- tdbD4850|Symbiobacterium_thermophilum_IAM_14863|292459|Glu|TTC -GACCCCATCGTCTAGA--GGCCTAGGACACCACCCTTTCACGGTGGCGG-CACGGGTTCGAATCCCGTTGGGGTCGCCA tdbD4636|Synechocystis_sp._PCC_6803|1148|Glu|TTC -GCCCCCATCGTCTAGA--GGCCTAGGACACCTCCCTTTCACGGAGGCGA-CAGGGATTCGAATTCCCTTGGGGGTA--- tdbD4747|Thermoanaerobacter_tengcongensis_MB4|273068|Glu|TTC -GGCCCCGTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGCAA-CACGGGTTCGAATCCCGTCGGGGTCACCA tdbD4742|Thermosynechococcus_elongatus_BP-1|197221|Glu|TTC -GCCCCCATCGTCTAGT--GGCCTAGGACACCTCCCTTTCACGGAGGCGA-CGGGGATTCGAATTCCCCTGGGGGTA--- tdbD4638|Thermotoga_maritima_MSB8|243274|Glu|TTC -GCCCCCATCGTCTAGC--GGCCTAGGACACTGGCCTTTCAAGCCAGAGG-CAGGGGTTCGAATCCCCTTGGGGGCGCCA tdbD4867|Thermus_thermophilus_HB27|262724|Glu|CTC AGGCCCCATCGTCTAGC--GGTT-AGGACGCGGCCCTCTCAAGGCCGAAA-CGGGGGTTCGATTCCCCCTGGGGTCACCA tdbD4868|Treponema_denticola_ATCC_35405|243275|Glu|TTC -GTCTCCTTCGTCTAGT--GGTT-AGGACATCGGGTTTTCATCCCGACAA-CAGGGGTTCAATTCCCCTAGGAGATG--- tdbD4633|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Glu|CTC -GGTCCCTTCGTCTATC--GGTT-AGGACATGAGATTCTCAATCTCAAAA-GACGGGTTCAATTCCCGTAGGGACTA--- tdbD4785|Tropheryma_whipplei_str._Twist|203267|Glu|CTC -GGCCCCATCGTCTAGA--GGTCTAGGACGTCGCCCTCTCACGGCGGTAG-CGCGGGTTCGAATCCCGCTGGGGTCA--- tdbD4788|Tropheryma_whipplei_TW08/27|218496|Glu|CTC -GGCCCCATCGTCTAGA--GGTCTAGGACGTCGCCCTCTCACGGCGGTAG-CGCGGGTTCGAATCCCGCTGGGGTCA--- tdbD4615|Ureaplasma_parvum_serovar_3|38504|Glu|TTC -GGCCTGTTGGTGAAGT--GACTGAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACAGGTCACCA tdbD4610|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Glu|TTC -GTCCCGTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGACTCCCCTACGGGATACCA tdbD4870|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Glu|TTC -GACTCTTTCGTCTAGT--GGTT-AGGACACCACCCTTTCACGGTGGTAA-CACGGGTTCAAATCCCGTAAGAGTCA--- tdbD4750|Xanthomonas_axonopodis_pv._citri_str._306|190486|Glu|CTC -GCTCCCTTCGTCTAAT--GGTT-AGGACGTGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGTCCCCTAGGGAGCACCA tdbD4748|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Glu|CTC -GCTCCCTTCGTCTAGC--GGTT-AGGACGTGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGCCCCCTAGGGAGCGCCA tdbD4639|Xylella_fastidiosa_9a5c|160492|Glu|CTC -GCTCCCTTCGTCTAGC--GGTT-AGGACATGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGCCCCCTAGGGAGCGCCA tdbD4790|Xylella_fastidiosa_Temecula1|183190|Glu|CTC -GCTCCCTTCGTCTAGC--GGTT-AGGACATGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGCCCCCTAGGGAGCGCCA tdbD4852|Yersinia_pestis_biovar_Microtus_str._91001|229193|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA tdbD4657|Yersinia_pestis_CO92|214092|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA tdbD4754|Yersinia_pestis_KIM|187410|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA tdbD4853|Yersinia_pseudotuberculosis_IP_32953|273123|Glu|TTC -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA #=GC SS_cons .(((((((..((((...........)))).(((((.......))))).....(((((.......)))))))))))).... #=GC SN .0000000..1111...........1111.22222.......22222.....33333.......333330000000.... #=GF CS 80 columns, 21 paired, 21 covariant; 4 stems //