ID | #exons | components / multiple alns | similarity | UCSC | pattern |
chr1_0002 |
28 |
(6, 7, 9, 16, 24) --- (20, 22) |
(6, 7, 9, 16, 24) --- (20, 22) |
chr1:93645919-93744266(+) |
-----AA-A------A---B-B-A---- |
chr1_0009 |
107 |
(2, 3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 26, 30, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 75, 78, 79, 85, 89, 97) --- (29, 34, 48, 87) --- (47, 49, 95) --- (50, 105) --- (81, 83) --- (90, 104) --- (96, 102) |
(2, 3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 26, 30, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 75, 78, 79, 85, 89, 97) --- (29, 34, 48, 87) --- (47, 49, 95) --- (50, 105) --- (81, 83) --- (90, 104) --- (96, 102) |
chr1:228395860-228566575(+) |
-AA---AAAAAAAAAAA-AAA-AA-A--BA---B-AAAAAAAAAAACBCD------------------------A--AA-E-E-A-B-AF----CGA----G-FD-- |
chr1_0012 |
22 |
(4, 15) --- (10, 19) |
(4, 15) --- (10, 19) |
chr1:1550794-1565990(+) |
---A-----B----A---B--- |
chr1_0034 |
35 |
(1, 15) --- (2, 16) --- (3, 17) --- (4, 18) --- (5, 19) --- (6, 20) --- (7, 10, 21, 24) --- (8, 22) --- (9, 23) --- (11, 25) --- (13, 27) --- (14, 28) |
(1, 15) --- (2, 16) --- (3, 17) --- (4, 18) --- (5, 19) --- (6, 20) --- (7, 10, 21, 24) --- (8, 22) --- (9, 23) --- (11, 25) --- (13, 27) --- (14, 28) |
chr1:1571099-1655775(-) |
ABCDEFGHIGJ-KLABCDEFGHIGJ-KL------- |
chr1_0039 |
72 |
(18, 41) --- (32, 44) |
(18, 41) --- (32, 44) |
chr1:215796235-216596738(-) |
-----------------A-------------B--------A--B---------------------------- |
chr1_0049 |
37 |
(4, 11, 14, 17, 19, 23, 26, 27, 30, 36) --- (6, 20, 29, 35) --- (7, 10) |
(4, 11, 14, 17, 19, 23, 26, 27, 30, 36) --- (6, 20, 29, 35) --- (7, 10) |
chr1:17248444-17299474(+) |
---A-BC--CA--A--A-AB--A--AA-BA----BA- |
chr1_0057 |
20 |
(4, 10) --- (5, 6) |
(4, 10) --- (5, 6) |
chr1:185126191-185260912(+) |
---ABB---A---------- |
chr1_0070 |
23 |
(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19) |
(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19) |
chr1:146034018-146068245(-) |
A-A-A-A-A-ABC-DABCD---- |
chr1_0128 |
107 |
(19, 26, 27, 29, 31, 32, 34, 35, 36, 37, 38, 40, 42, 43, 44, 45, 46, 50, 51, 53, 57, 58, 59, 60, 61, 62, 64, 65, 67, 68, 69, 70, 71, 72, 78, 79, 81) --- (20, 24) --- (73, 98) --- (83, 86) --- (88, 89) --- (99, 101, 103, 105) |
(19, 26, 27, 29, 31, 32, 34, 35, 36, 37, 38, 40, 42, 43, 44, 45, 46, 50, 51, 53, 57, 58, 59, 60, 61, 62, 64, 65, 67, 68, 69, 70, 71, 72, 78, 79, 81) --- (20, 24) --- (73, 98) --- (83, 86) --- (88, 89) --- (99, 101, 103, 105) |
chr1:185703682-186160085(+) |
------------------AB---B-AA-A-AA-AAAAA-A-AAAAA---AA-A---AAAAAA-AA-AAAAAAC----AA-A-D--D-EE--------CF-F-F-F-- |
chr1_0180 |
86 |
(1, 6) --- (2, 7) --- (3, 8) --- (4, 9) --- (5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86) |
(1, 6) --- (2, 7) --- (3, 8) --- (4, 9) --- (5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86) |
chr1:145293370-145368682(+) |
ABCDEABCDE-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E |
chr1_0186 |
85 |
(18, 30) --- (32, 55) --- (36, 38) --- (48, 68) --- (51, 72) |
(18, 30) --- (32, 55) --- (36, 38) --- (48, 68) --- (51, 72) |
chr1:225117362-225586996(+) |
-----------------A-----------A-B---C-C---------D--E---B------------D---E------------- |
chr1_0201 |
23 |
(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19) |
(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19) |
chr1:147575799-147610081(-) |
A-A-A-A-A-ABC-DABCD---- |
chr1_0216 |
47 |
(2, 10, 18, 26, 34) --- (3, 11, 19, 27, 35) --- (4, 12, 20, 28, 36) --- (5, 9, 13, 17, 21, 25, 29, 33, 37, 41) --- (6, 14, 22, 30, 38) --- (7, 15, 23, 31, 39) --- (8, 16, 24, 32, 40) |
(2, 10, 18, 26, 34) --- (3, 11, 19, 27, 35) --- (4, 12, 20, 28, 36) --- (5, 9, 13, 17, 21, 25, 29, 33, 37, 41) --- (6, 14, 22, 30, 38) --- (7, 15, 23, 31, 39) --- (8, 16, 24, 32, 40) |
chr1:207669472-207815109(+) |
-ABCDEFGDABCDEFGDABCDEFGDABCDEFGDABCDEFGD------ |
chr1_0239 |
12 |
(3, 9) --- (4, 10) |
(3, 9) --- (4, 10) |
chr1:207818457-207897034(+) |
--AB----AB-- |
chr1_0251 |
47 |
(5, 14) --- (6, 15) |
(5, 14) --- (6, 15) |
chr1:181452715-181770713(+) |
----AB-------AB-------------------------------- |
chr1_0252 |
20 |
(3, 7, 11, 15) --- (6, 10, 14) --- (9, 13) |
(3, 7, 11, 15) --- (6, 10, 14) --- (9, 13) |
chr1:207627644-207663238(+) |
--A--BA-CBA-CBA----- |
chr1_0278 |
10 |
(1, 10) --- (6, 7) |
(1, 10) --- (6, 7) |
chr1:1288071-1293915(-) |
A----BB--A |
chr1_0288 |
15 |
(6, 10) --- (7, 9) |
(6, 10) --- (7, 9) |
chr1:17081401-17090975(-) |
-----AB-BA----- |
chr1_0297 |
26 |
(2, 3) --- (4, 19) |
(2, 3) --- (4, 19) |
chr1:229577044-229644088(-) |
-AAB--------------B------- |
chr1_0299 |
43 |
(12, 27) --- (14, 18) --- (24, 34) |
(12, 27) --- (14, 18) --- (24, 34) |
chr1:62208148-62629589(+) |
-----------A-B---B-----C--A------C--------- |
chr1_0306 |
51 |
(17, 27) --- (21, 35, 48) |
(17, 27) --- (21, 35, 48) |
chr1:186280787-186344457(-) |
----------------A---B-----A-------B------------B--- |
chr1_0316 |
29 |
(1, 3, 5, 7, 9, 14, 19) --- (10, 15, 20) --- (11, 16, 21) --- (12, 17, 22) --- (13, 18, 23) |
(1, 3, 5, 7, 9, 14, 19) --- (10, 15, 20) --- (11, 16, 21) --- (12, 17, 22) --- (13, 18, 23) |
chr1:16890411-16939982(-) |
A-A-A-A-ABCDEABCDEABCDE------ |
chr1_0328 |
20 |
(4, 9, 16) --- (8, 11) |
(4, 9, 16) --- (8, 11) |
chr1:202163117-202288888(+) |
---A---BA-B----A---- |
chr1_0331 |
105 |
(29, 64) --- (73, 97) --- (80, 90) |
(29, 64) --- (73, 97) --- (80, 90) |
chr1:237205701-237997288(+) |
----------------------------A----------------------------------A--------B------C---------C------B-------- |
chr1_0349 |
34 |
(25, 30) --- (28, 33) |
(25, 30) --- (28, 33) |
chr1:43996546-44089342(+) |
------------------------A--B-A--B- |
chr1_0371 |
71 |
(3, 5, 8, 10, 15, 16, 18, 20, 21, 22, 25, 27, 30, 36, 39, 40, 41, 53, 55, 59) --- (11, 47) |
(3, 5, 8, 10, 15, 16, 18, 20, 21, 22, 25, 27, 30, 36, 39, 40, 41, 53, 55, 59) --- (11, 47) |
chr1:32117847-32169768(-) |
--A-A--A-AB---AA-A-AAA--A-A--A-----A--AAA-----B-----A-A---A------------ |
chr1_0380 |
97 |
(4, 11) --- (12, 90, 91) --- (21, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49) --- (30, 32, 34, 36, 38, 40, 42, 46, 48) --- (50, 52) --- (58, 70, 78) --- (61, 71, 81) --- (62, 72, 73) --- (69, 79) |
(4, 11) --- (12, 90, 91) --- (21, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49) --- (30, 32, 34, 36, 38, 40, 42, 46, 48) --- (50, 52) --- (58, 70, 78) --- (61, 71, 81) --- (62, 72, 73) --- (69, 79) |
chr1:22148737-22263750(-) |
---A------AB--------C--------DCDCDCDCDCDCDC-CDCDCE-E-----F--GH------IFGHH----FI-G--------BB------ |
chr1_0527 |
44 |
(6, 16) --- (14, 23, 40) |
(6, 16) --- (14, 23, 40) |
chr1:201008640-201081694(-) |
-----A-------B-A------B----------------B---- |
chr1_0545 |
53 |
(10, 16, 42) --- (15, 17) |
(10, 16, 42) --- (15, 17) |
chr1:235824344-236030220(-) |
---------A----BAB------------------------A----------- |
chr1_0578 |
37 |
(3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34) --- (27, 28, 30, 33) |
(3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34) --- (27, 28, 30, 33) |
chr1:3404512-3528059(-) |
--AAAAAAAAAAAAAAAAAAAAAAA-BB-B--BA--- |
chr1_0625 |
32 |
(6, 7, 11, 13, 15, 20, 21, 28, 30) --- (24, 27) |
(6, 7, 11, 13, 15, 20, 21, 28, 30) --- (24, 27) |
chr1:115397454-115537988(+) |
-----AA---A-A-A----AA--B--BA-A-- |
chr1_0649 |
12 |
(3, 4) --- (6, 11) |
(3, 4) --- (6, 11) |
chr1:155290639-155300909(+) |
--AA-B----B- |
chr1_0657 |
70 |
(9, 32, 50, 67) --- (21, 41, 62) --- (27, 36, 55, 56) --- (31, 40, 46) --- (47, 53) --- (49, 52) |
(9, 32, 50, 67) --- (21, 41, 62) --- (27, 36, 55, 56) --- (31, 40, 46) --- (47, 53) --- (49, 52) |
chr1:33979608-34631443(-) |
--------A-----------B-----C---DA---C---DB----DE-FA-FE-CC-----B----A--- |
chr1_0668 |
34 |
(10, 12, 13, 14, 20, 23, 24, 25, 26, 30, 31) --- (28, 29) |
(10, 12, 13, 14, 20, 23, 24, 25, 26, 30, 31) --- (28, 29) |
chr1:120454177-120612276(-) |
---------A-AAA-----A--AAAA-BBAA--- |
chr1_0682 |
37 |
(5, 11) --- (17, 23) |
(5, 11) --- (17, 23) |
chr1:24382531-24438665(-) |
----A-----A-----B-----B-------------- |
chr1_0837 |
9 |
(2, 5) --- (3, 6) --- (4, 7) |
(2, 5) --- (3, 6) --- (4, 7) |
chr1:101185296-101204599(+) |
-ABCABC-- |
chr1_0860 |
36 |
(4, 6, 7, 8, 9, 10, 12, 17) --- (13, 24) |
(4, 6, 7, 8, 9, 10, 12, 17) --- (13, 24) |
chr1:955502-991492(+) |
---A-AAAAA-AB---A------B------------ |
chr1_0985 |
15 |
(3, 7) --- (4, 8) --- (5, 9) |
(3, 7) --- (4, 8) --- (5, 9) |
chr1:12123433-12204262(+) |
--ABC-ABC------ |
chr1_1161 |
21 |
(2, 7) --- (3, 8) --- (4, 9) --- (5, 10) --- (6, 11, 13, 15, 17, 19, 21) |
(2, 7) --- (3, 8) --- (4, 9) --- (5, 10) --- (6, 11, 13, 15, 17, 19, 21) |
chr1:144614958-144828810(+) |
-ABCDEABCDE-E-E-E-E-E |
chr1_1329 |
16 |
(2, 3) --- (6, 16) |
(2, 3) --- (6, 16) |
chr1:36771993-36786948(+) |
-AA--B---------B |