Detected sbRNAs/Y RNAs

Full list of detected sbRNAs/Y RNAs [HTML|CSV]
all sbRNAs [FASTA]
sbRNAs with verified promoter regions [FASTA]
Loop motifs of sbRNAs with verified promoter regions (+ Hits from A. caninum) [FASTA]

Genomes/Sequences used in this anlysis

Upstream sequences and Position Weight Matrices of other Pol III transcripts than sbRNAs/Y RNAs

Upstream sequences of U6 RNAs, RNAseP, RNAseMRP and tRNA-Sec used to build PWMs for TATA box, PSE A and PSE B [FASTA]
TATA box used for all species in clade V [Alignment|PWM]

C. elegans [Alignment|PWM PSE A|PWM PSE B]
C. briggsae [Alignment|PWM PSE A|PWM PSE B]
C. remanei [Alignment|PWM PSE A|PWM PSE B]
C. brenneri [Alignment|PWM PSE A|PWM PSE B]
C. japonica [Alignment|PWM PSE A|PWM PSE B]
P. pacificus [Alignment|PWM PSE A|PWM PSE B]
H. contortus [Alignment|PWM PSE A|PWM PSE B]
M. incognita [Alignment]
M. hapla [Alignment]

Data used for syntenic region detection

C. elegans [BED file]
C. brenneri [BED file]
C. briggsae [BED file]
C. remanei [BED file]
C. japonica [BED file]
List of proteins with sbRNAs in vicinity [HTML]