For any questions please contact manja@bioinf.uni-leipzig.de

A new secondary structure model

Alignments

Organisms	Fasta	Alignment
All Metazoans	7sk	7sk.stk
Add-Ons	adds-7sk	adds-7sk.stk
Deuterostomes	Hexim	Hexim ClustalW aln \| Hexim MUSCLE aln
Protostomes	Hexim	Hexim ClustalW aln \| Hexim MUSCLE aln
Nematodes	Hexim	Hexim ClustalW aln \| Hexim MUSCLE aln
All Metazoans	Hexim	Hexim ClustalW aln \| Hexim MUSCLE aln
All Metazoans		MePCE ClustalW aln \| MePCE MUSCLE aln
All Metazoans		Larp7 ClustalW aln \| Larp7 MUSCLE aln

SplitsTree image of HEXIM sequence alignment

SplitsTree image of Caenorhabditis 7SK sequence alignment

Other data

Files for local PSI-tblastn search in Nematoda:
Nematoda HEXIM PSSM
the input sequence

Nematoda HEXIM sequences from the NCBI EST database:
ESTs

Overview of used genomes and their source: