>creating p-loci data structure...done
 -> selfscore (ENSP00000369881) successfully validated...
 -> selfscore (ENSP00000250092) successfully validated...
 -> selfscore (ENSP00000352876) successfully validated...
 -> selfscore (ENSP00000355354) successfully validated...
 -> selfscore (ENSP00000250113) successfully validated...
 -> selfscore (ENSP00000369833) successfully validated...
 -> selfscore (ENSP00000369816) successfully validated...
 -> selfscore (ENSP00000250111) successfully validated...
 -> selfscore (ENSP00000269305) successfully validated...
 -> selfscore (ENSP00000324203) successfully validated...
 -> selfscore (ENSP00000369794) successfully validated...
 -> selfscore (ENSP00000340658) successfully validated...
 -> selfscore (ENSP00000082259) successfully validated...
>fetching global-besthit data for all queries against Gallus_gallus...>warning: tblastn/TP53_ENSG00000141510_1e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000250092"! (getBestBlastHit)
>warning: tblastn/TP53_ENSG00000141510_1e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000352876"! (getBestBlastHit)
>warning: tblastn/TP53_ENSG00000141510_1e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000082259"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000161960, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129226, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129255, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129194, targetOrg=Gallus_gallus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129245, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141504, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129214, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129244, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141510, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141499, targetOrg=Gallus_gallus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000108947, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183914, targetOrg=Gallus_gallus)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>fetching global-besthit data for all queries against Canis_familiaris...done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000161960, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129226, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129255, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129194, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129245, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141504, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129214, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129244, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141510, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141499, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000108947, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183914, targetOrg=Canis_familiaris)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>fetching global-besthit data for all queries against Macaca_mulatta...done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000161960, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129226, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129255, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129194, targetOrg=Macaca_mulatta)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129245, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141504, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129214, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129244, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141510, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141499, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000108947, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183914, targetOrg=Macaca_mulatta)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>fetching global-besthit data for all queries against Gasterosteus_aculeatus...>warning: tblastn/TP53_ENSG00000141510_1e5.protein.info.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000250092"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000161960, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129226, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129255, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129194, targetOrg=Gasterosteus_aculeatus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129245, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141504, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129214, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129244, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141510, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141499, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000108947, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183914, targetOrg=Gasterosteus_aculeatus)...ok
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_7265" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_395" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_2922" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_5454" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_5451" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_286" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_10078" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_6895" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_7234" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_7228" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>fetching global-besthit data for all queries against Homo_sapiens...done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000161960, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129226, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129255, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129194, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129245, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141504, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129214, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000129244, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141510, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000141499, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000108947, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183914, targetOrg=Homo_sapiens)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>"ENSG00000141510-homologs/comparaHits/Homo_sapiens.ENSP00000269305.fa" did already exist, skip downloading...