>creating p-loci data structure...done
 -> selfscore (ENSP00000347401) successfully validated...
 -> selfscore (ENSP00000300398) successfully validated...
 -> selfscore (ENSP00000255784) successfully validated...
 -> selfscore (ENSP00000354476) successfully validated...
 -> selfscore (ENSP00000327934) successfully validated...
 -> selfscore (ENSP00000370755) successfully validated...
 -> selfscore (ENSP00000291232) successfully validated...
 -> selfscore (ENSP00000215980) successfully validated...
 -> selfscore (ENSP00000370752) successfully validated...
 -> selfscore (ENSP00000332866) successfully validated...
 -> selfscore (ENSP00000328800) successfully validated...
 -> selfscore (ENSP00000355349) successfully validated...
 -> selfscore (ENSP00000312753) successfully validated...
 -> selfscore (ENSP00000327467) successfully validated...
 -> selfscore (ENSP00000330937) successfully validated...
>fetching global-besthit data for all queries against Gallus_gallus...>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000327934"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000370755"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000291232"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000370752"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100138, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000167077, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100147, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198911, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184068, targetOrg=Gallus_gallus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205705, targetOrg=Gallus_gallus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000159958, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100162, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205704, targetOrg=Gallus_gallus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100167, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183066, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198951, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000177096, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183172, targetOrg=Gallus_gallus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184983, targetOrg=Gallus_gallus)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>fetching global-besthit data for all queries against Canis_familiaris...>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Canis_familiaris.blastresult contains no data (at least for query "ENSP00000370752"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100138, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000167077, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100147, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198911, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184068, targetOrg=Canis_familiaris)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205705, targetOrg=Canis_familiaris)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000159958, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100162, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205704, targetOrg=Canis_familiaris)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100167, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183066, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198951, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000177096, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183172, targetOrg=Canis_familiaris)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184983, targetOrg=Canis_familiaris)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>fetching global-besthit data for all queries against Macaca_mulatta...>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Macaca_mulatta.blastresult contains no data (at least for query "ENSP00000327934"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100138, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000167077, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100147, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198911, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184068, targetOrg=Macaca_mulatta)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205705, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000159958, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100162, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205704, targetOrg=Macaca_mulatta)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100167, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183066, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198951, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000177096, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183172, targetOrg=Macaca_mulatta)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184983, targetOrg=Macaca_mulatta)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
Note: comparaResult did not give exactly one result type (ortholog_one2one and ortholog_one2many for target Macaca_mulatta)!
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>fetching global-besthit data for all queries against Gasterosteus_aculeatus...>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000327934"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000370755"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000291232"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000215980"! (getBestBlastHit)
>warning: tblastn/SREBF2_ENSG00000198911_2e5.protein.info.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000370752"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100138, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000167077, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100147, targetOrg=Gasterosteus_aculeatus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198911, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184068, targetOrg=Gasterosteus_aculeatus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205705, targetOrg=Gasterosteus_aculeatus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000159958, targetOrg=Gasterosteus_aculeatus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100162, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205704, targetOrg=Gasterosteus_aculeatus)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100167, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183066, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198951, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000177096, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183172, targetOrg=Gasterosteus_aculeatus)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184983, targetOrg=Gasterosteus_aculeatus)...ok
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_4215" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_8218" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_2001" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_11123" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_8279" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_4389" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893.
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_9740" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_4216" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_628" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "contig_5909" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>fetching global-besthit data for all queries against Homo_sapiens...done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100138, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000167077, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100147, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198911, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184068, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205705, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000159958, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100162, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000205704, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000100167, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183066, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198951, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000177096, targetOrg=Homo_sapiens)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183172, targetOrg=Homo_sapiens)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184983, targetOrg=Homo_sapiens)...none
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
Argument "contig_4215" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/bin/doSyntenyAlignment.pl line 1032.
Argument "contig_4389" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/bin/doSyntenyAlignment.pl line 1032.