>creating p-loci data structure...done -> selfscore (ENSP00000295296) successfully validated... -> selfscore (ENSP00000314501) successfully validated... -> selfscore (ENSP00000282947) successfully validated... -> selfscore (ENSP00000371556) successfully validated... -> selfscore (ENSP00000336741) successfully validated... -> selfscore (ENSP00000226877) successfully validated... -> selfscore (ENSP00000374264) successfully validated... -> selfscore (ENSP00000371548) successfully validated... -> selfscore (ENSP00000351857) successfully validated... -> selfscore (ENSP00000264864) successfully validated... -> selfscore (ENSP00000303468) successfully validated... -> selfscore (ENSP00000371506) successfully validated... -> selfscore (ENSP00000308272) successfully validated... -> selfscore (ENSP00000371483) successfully validated... -> selfscore (ENSP00000264868) successfully validated... -> selfscore (ENSP00000317556) successfully validated... -> selfscore (ENSP00000345206) successfully validated... -> selfscore (ENSP00000295589) successfully validated... >fetching global-besthit data for all queries against Gallus_gallus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163144, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000176201, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000152994, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109819, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109606, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109610, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000181982, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000153012, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109618, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000038210, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168228, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000053900, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000173025, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000157765, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000091490, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180408, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168214, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163394, targetOrg=Gallus_gallus)...ok >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >fetching global-besthit data for all queries against Canis_familiaris...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163144, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000176201, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000152994, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109819, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109606, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109610, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000181982, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000153012, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109618, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000038210, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168228, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000053900, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000173025, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000157765, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000091490, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180408, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168214, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163394, targetOrg=Canis_familiaris)...ok >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >fetching global-besthit data for all queries against Macaca_mulatta...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163144, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000176201, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000152994, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109819, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109606, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109610, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000181982, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000153012, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109618, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000038210, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168228, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000053900, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000173025, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000157765, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000091490, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180408, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168214, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163394, targetOrg=Macaca_mulatta)...ok >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >fetching global-besthit data for all queries against Gasterosteus_aculeatus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163144, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000176201, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000152994, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109819, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109606, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109610, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000181982, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000153012, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109618, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000038210, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168228, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000053900, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000173025, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000157765, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000091490, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180408, targetOrg=Gasterosteus_aculeatus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168214, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163394, targetOrg=Gasterosteus_aculeatus)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_3215" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_7166" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_7645" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_7647" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_7157" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_5107" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_8176" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_1837" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_8251" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_5895" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >fetching global-besthit data for all queries against Homo_sapiens...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163144, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000176201, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000152994, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109819, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109606, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109610, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000181982, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000153012, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000109618, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000038210, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168228, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000053900, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000173025, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000157765, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000091490, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180408, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000168214, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000163394, targetOrg=Homo_sapiens)...ok >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. Argument "contig_7166" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/bin/doSyntenyAlignment.pl line 1032. Argument "contig_3215" isn't numeric in int at /homes/bierdepot/joe/MyLocalSrcDir/perl/bin/doSyntenyAlignment.pl line 1032. >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading... >"ENSG00000109606-homologs/comparaHits/Homo_sapiens.ENSP00000336741.fa" did already exist, skip downloading...