C4_CDX1_ENSG00000113722_1e6.protein.info Alignment Results

Data table for reference protein loci

QueryProtein(s)=ENSP00000231656 (contained in p13)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	IL17B	ENSP00000261796	ENST00000261796	ENSG00000127743	IL17B_HUMAN	5	148734125	148738981	148736527	-1	3	180	359.5
p2	CSNK1A1	ENSP00000261798	ENST00000261798	ENSG00000113712	NM_001025105.1	5	148855433	148855933	148855679	-1	1	166	282.8
p3	CSNK1A1	ENSP00000367072	ENST00000377841	ENSG00000113712	NP_001020276.1	5	148865198	148910720	148872954	-1	10	364	732.8
p4	NP_001001669.2	ENSP00000374676	ENST00000390026	ENSG00000183111	NP_001001669.2	5	148976294	148991944	148981708	1	9	532	1030.5
p5	PPARGC1B	ENSP00000312649	ENST00000309241	ENSG00000155846	PRGC2_HUMAN	5	149090099	149207314	149193360	1	12	1023	1836.5
p6	PDE6A	ENSP00000255266	ENST00000255266	ENSG00000132915	PDE6A_HUMAN	5	149220651	149304429	149258230	-1	22	860	1695.2
p7	SLC26A2	ENSP00000286298	ENST00000286298	ENSG00000155850	S26A2_HUMAN	5	149337409	149341569	149340454	1	2	739	1343.9
p8	TIGD6	ENSP00000296736	ENST00000296736	ENSG00000164296	TIGD6_HUMAN	5	149354539	149356104	149355316	-1	1	521	959.7
p9	SMF_HUMAN	ENSP00000261804	ENST00000261804	ENSG00000113716	SMF_HUMAN	5	149360491	149411948	149386850	1	20	1441	2757.4
p10	CSF1R	ENSP00000286301	ENST00000286301	ENSG00000182578	CSF1R_HUMAN	5	149413825	149446183	149429675	-1	21	972	1829.6
p11	O95036_HUMAN	ENSP00000305052	ENST00000305796	ENSG00000169216	O95036_HUMAN	5	149454058	149454804	149454427	1	1	248	478.4
p12	PDGFRB	ENSP00000261799	ENST00000261799	ENSG00000113721	PGFRB_HUMAN	5	149475519	149496803	149486285	-1	22	1106	2146.8
p13	CDX1	ENSP00000231656	ENST00000231656	ENSG00000113722	CDX1_HUMAN	5	149526633	149543436	149527026	1	3	265	349.4
p14	SLC6A7	ENSP00000230671	ENST00000230671	ENSG00000011083	SC6A7_HUMAN	5	149550084	149569371	149562196	1	14	636	1277.7
p15	CAMK2A	ENSP00000305090	ENST00000351010	ENSG00000070808	Q9UQM7-2	5	149582741	149649381	149610519	-1	18	489	930.4
p16	ARSI	ENSP00000333395	ENST00000328668	ENSG00000183876	ARSI_HUMAN	5	149656970	149662129	149657819	-1	2	569	1109.1
p17	TCOF1	ENSP00000314349	ENST00000323753	ENSG00000070814	Q13428-5	5	149717503	149758804	149736209	1	26	1451	787.5
p18	CD74	ENSP00000009530	ENST00000009530	ENSG00000019582	HG2A_HUMAN	5	149762254	149772505	149764931	-1	9	296	607.8
p19	RPS14	ENSP00000311028	ENST00000312037	ENSG00000164587	RS14_HUMAN	5	149804042	149807489	149806635	-1	4	151	296.2
p20	NDST1	ENSP00000261797	ENST00000261797	ENSG00000070614	P52848-2	5	149881010	149913087	149895527	1	15	884	1757.2
p21	SYNPO	ENSP00000315289	ENST00000314840	ENSG00000171992	SYNPO_HUMAN	5	149978123	150010088	150008688	1	2	929	1712.2
p22	MYOZ3	ENSP00000297130	ENST00000297130	ENSG00000164591	MYOZ3_HUMAN	5	150022697	150036630	150031612	1	6	251	368.4
p22	Q96MU4_HUMAN	ENSP00000314547	ENST00000326726	ENSG00000177512	Q96MU4_HUMAN	5	150031542	150031964	150031749	-1	1	140	286
p23	RBM22	ENSP00000199814	ENST00000199814	ENSG00000086589	-	5	150051506	150060740	150055371	-1	12	420	849
p24	DCTN4	ENSP00000255263	ENST00000255263	ENSG00000132912	DCTN4_HUMAN	5	150070904	150118748	150090827	-1	13	460	935.1
p25	NM_032947.3	ENSP00000322424	ENST00000324552	ENSG00000181368	NM_032947.3	5	150155731	150155961	150155842	1	1	76	137.8
p26	-	ENSP00000367002	ENST00000377771	ENSG00000204891	-	5	150208381	150260369	150237826	1	4	83	149.6
p26	ZNF300	ENSP00000274599	ENST00000274599	ENSG00000145908	ZN300_HUMAN	5	150255179	150262910	150256082	-1	4	604	556.6
p27	GPX3	ENSP00000373477	ENST00000388825	ENSG00000211445	GPX3_HUMAN	5	150380409	150387884	150386749	1	5	226	448.3
p28	GPX3	ENSP00000373478	ENST00000388826	ENSG00000211445	-	5	150388017	150388352	150388179	1	1	111	226.8

total length of ref-loci (on slice) = 1654228 (17e5)

region 1

syntenyRegion: Danio_rerio.glob04.21.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 33607131:36894679 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=25.63 log_scoreRatio_sum=5.27 focal_scoreRatio_sum=3.27
AlnScore=2550 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	q1	+/+	ENSP00000311028	RPS14	q1	q1	295.2	21	36367191	36370327	1	4	100%	93.4%	489	0.17 / 0.01 = 17	ortholog_one2one: rps14	1
p20	q2	/+	ENSP00000261797	NDST1	q2	q2	1458.5	21	36292375	36356206	1	14	99.7%	77.6%	2826	0.26 / 0.16 = 1.63	noComparaHits:	1
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	q3	/+	ENSP00000199814	RBM22	q3	q3	775.2	21	36136115	36153894	-1	11	99.5%	79.8%	1383	0.56 / 0.08 = 7	ortholog_one2one: rbm22	1
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gape	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
---	q6	gape	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-

region 2

syntenyRegion: Danio_rerio.glob05.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 53186909:56477193 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=9.99 log_scoreRatio_sum=0.79 focal_scoreRatio_sum=0.86
AlnScore=1796 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p20	q2	/+	ENSP00000261797	NDST1	q2	q2	471.9	14	55669371	55674615	1	4	40.7%	68.1%	1086	0.26 / 0.73 = 0.36	noComparaHits:	6
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p21	q4	+/+	ENSP00000315289	SYNPO	q4	q4	225.1	14	53956489	53957736	-1	1	43.8%	41%	1248	0.91 / 0.86 = 1.06	noComparaHits:	1
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q5	+/+	ENSP00000255263	DCTN4	q5	q5	817.5	14	53631920	53657995	1	13	99.1%	82.4%	1458	0.94 / 0.12 = 7.83	ortholog_one2one: zgc:112431	1
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000274599	ZNF300	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	q6	+/+	ENSP00000373477	GPX3	q6	q6	259.2	14	53613423	53620174	-1	4	82.3%	65.3%	567	0.31 / 0.42 = 0.74	ortholog_one2many: XR_029493.1	1
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 3

syntenyRegion: Danio_rerio.glob47.Zv7_NA3207.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3207 -i 8346:84661 -f 57e3 some_geneID_to_be_selected
scoreRatio_sum=2.42 log_scoreRatio_sum=0.32 focal_scoreRatio_sum=0.53
AlnScore=670 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000261804	SMF_HUMAN	q1	q1	944.4	Zv7_NA3207	8346	32101	1	15	64.1%	49.7%	2886	0.98 / 0.65 = 1.51	noComparaHits:	1
p10	q2	+/+	ENSP00000286301	CSF1R	q2	q2	600.8	Zv7_NA3207	40185	66470	-1	12	58.7%	51.1%	1803	0.61 / 0.67 = 0.91	noComparaHits: LOC100008185	4
p11	---	gape	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000261799	PDGFRB	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 4

syntenyRegion: Danio_rerio.glob06.21.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 41625756:44754339 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=2.31 log_scoreRatio_sum=0.18 focal_scoreRatio_sum=1.16
AlnScore=1107 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p13	q2	/+	ENSP00000231656	CDX1	q2	q2	172	21	43615612	43626244	1	2	81.1%	46.1%	627	0.39 / 0.5 = 0.78	ortholog_one2one: CDX1	2
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q3	+/+	ENSP00000333395	ARSI	q3	q3	752.9	21	43604149	43607814	1	2	93.7%	68.1%	1629	0.49 / 0.32 = 1.53	ortholog_one2one: LOC563783	1
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 5

syntenyRegion: Danio_rerio.glob03.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 10606765:13715415 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=2.1 log_scoreRatio_sum=0.1 focal_scoreRatio_sum=0.28
AlnScore=1183 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gaps	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gapq	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q3	+/+	ENSP00000255266	PDE6A	q3	q3	1194.4	21	12031344	12045552	-1	19	93.5%	68.8%	2577	0.29 / 0.29 = 1	between_species_paralog: LOC100000610	2
p7	q4	+/+	ENSP00000286298	SLC26A2	q4	q4	671.2	21	12074135	12077301	1	2	90%	52.9%	2046	0.55 / 0.5 = 1.1	between_species_paralog: zgc:158435	1
---	q5	gapp	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6

syntenyRegion: Danio_rerio.glob07.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 20240627:23413232 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=4.1 log_scoreRatio_sum=0.03 focal_scoreRatio_sum=0.48
AlnScore=1514 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000374676	NP_001001669.2	q1	q1	384.9	14	21864174	21884205	1	7	74.8%	47.2%	1206	0.75 / 0.62 = 1.21	ortholog_one2one: LOC793242	1
p5	q2	+/+	ENSP00000312649	PPARGC1B	q2	q2	318.9	14	22016664	22040479	1	7	51.2%	38.5%	1557	0.81 / 0.82 = 0.99	between_species_paralog: ppargc1b	2
p6	q3	+/+	ENSP00000255266	PDE6A	q3	q3	1255	14	22051678	22077450	-1	19	95.1%	71.3%	2607	0.29 / 0.25 = 1.16	ortholog_one2one: pde6a	1
p7	q4	/+	ENSP00000286298	SLC26A2	q4	q4	341.6	14	22485152	22486327	-1	1	53.5%	54%	1176	0.55 / 0.74 = 0.74	ortholog_one2one: LOC557046	9
p8	---	gape	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7

syntenyRegion: Danio_rerio.glob09.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 14475691:17001220 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=1.93 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=0.36
AlnScore=991 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000286301	CSF1R	q1	q1	661.9	1	15354847	15381590	-1	15	67%	47.1%	2121	0.61 / 0.63 = 0.97	noComparaHits: kitb	2
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	q2	/+	ENSP00000261797	NDST1	q2	q2	1266.5	1	16148506	16272141	-1	13	96.6%	70.5%	2610	0.26 / 0.27 = 0.96	noComparaHits:	2
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8

syntenyRegion: Danio_rerio.glob40.20.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 22717850:26021989 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=0.43
AlnScore=361 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000261799	PDGFRB	q1	q1	777.1	20	23258130	23282937	1	17	76.9%	44%	2739	0.54 / 0.63 = 0.86	noComparaHits: pdgfra	3
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9

syntenyRegion: Danio_rerio.glob08.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 29308252:32600676 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=1.77 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.19
AlnScore=1173 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gapq	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	/+	ENSP00000367072	CSNK1A1	q2	q2	414.8	12	30510654	30519536	1	6	72%	72.6%	837	0.36 / 0.43 = 0.84	between_species_paralog: csnk1d	4
p4	---	gapq	ENSP00000374676	NP_001001669.2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	q3	+/+	ENSP00000261797	NDST1	q3	q3	1248.6	12	32566145	32588476	1	13	99.7%	65.4%	2814	0.26 / 0.28 = 0.93	between_species_paralog: LOC562571	3
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10

syntenyRegion: Danio_rerio.glob38.6.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 15297565:18347025 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=0.69 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=0.17
AlnScore=108 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000286301	CSF1R	q1	q1	198.4	6	17037364	17099696	-1	4	34.8%	34.7%	981	0.61 / 0.89 = 0.69	noComparaHits: si:dkey-209n16.1	noData
p11	---	gape	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 11

syntenyRegion: Danio_rerio.glob58.14.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 23887512:26213113 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=1.63 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=1.19
AlnScore=846 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000261799	PDGFRB	q1	q1	816.9	14	25776493	25805955	1	15	68.5%	52.7%	2355	0.54 / 0.61 = 0.89	noComparaHits: pdgfrb2	2
p13	q2	+/+	ENSP00000231656	CDX1	q2	q2	163	14	25691140	25714598	-1	3	84.9%	45.8%	627	0.39 / 0.53 = 0.74	noComparaHits: cdx1a	3
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 12

syntenyRegion: Danio_rerio.glob50.12.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 92898:3321213 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=472 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000255266	PDE6A	q1	q1	800.8	12	3239252	3259827	1	14	93.7%	46.7%	2601	0.29 / 0.52 = 0.56	between_species_paralog: pde6c	3
p7	---	gape	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13

syntenyRegion: Danio_rerio.glob53.24.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 20007287:22410837 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=1.48 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=0.54
AlnScore=439 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000286301	CSF1R	q1	q1	436.8	24	20280840	20300118	-1	10	35.4%	55.1%	1080	0.61 / 0.76 = 0.8	noComparaHits: ENSDARG00000058503	7
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	+/+	ENSP00000261799	PDGFRB	q2	q2	437.9	24	20343895	20387531	-1	12	42.7%	43.7%	1467	0.54 / 0.79 = 0.68	noComparaHits: flt1	7
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 14

syntenyRegion: Danio_rerio.glob01.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 23881065:27175667 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=2.46 log_scoreRatio_sum=-0.88 focal_scoreRatio_sum=0.54
AlnScore=2006 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	+/+	ENSP00000305090	CAMK2A	q1	q1	754.7	13	26917017	27035446	-1	13	84%	82.9%	1308	0.07 / 0.18 = 0.39	noComparaHits: LOC793359	6
p16	q2	+/+	ENSP00000333395	ARSI	q2	q2	632.6	13	27048346	27050689	-1	3	91.2%	59.6%	1611	0.49 / 0.42 = 1.17	noComparaHits:	2
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	q3	/+	ENSP00000261797	NDST1	q3	q3	1233.4	13	27060494	27090114	-1	12	94.3%	69.9%	2613	0.26 / 0.29 = 0.9	noComparaHits:	4
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 15

syntenyRegion: Danio_rerio.glob51.16.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 12706227:15986938 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=1.28 log_scoreRatio_sum=-0.89 focal_scoreRatio_sum=0.93
AlnScore=589 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q1	+/+	ENSP00000231656	CDX1	q1	q1	105.1	16	15953566	15954702	-1	2	58.9%	37.6%	492	0.39 / 0.69 = 0.57	noComparaHits: hoxa2b	4
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p14	q3	+/+	ENSP00000230671	SLC6A7	q3	q3	395	16	14391224	14413159	-1	9	64%	42.1%	1251	0.49 / 0.69 = 0.71	between_species_paralog: slc6a19	noData
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 16

syntenyRegion: Danio_rerio.glob43.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 1373801:4114518 -f 21e5 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.05
AlnScore=236 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000255266	PDE6A	q1	q1	401	9	1486139	1554785	1	11	51%	41.7%	1326	0.29 / 0.76 = 0.38	between_species_paralog: LOC561338	6
p7	---	gape	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17

syntenyRegion: Danio_rerio.glob35.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 26290873:29426364 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=2.11 log_scoreRatio_sum=-1.13 focal_scoreRatio_sum=0.56
AlnScore=935 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p7	q2	+/+	ENSP00000286298	SLC26A2	q2	q2	418.9	6	27577421	27583948	1	11	57.4%	42.8%	1314	0.55 / 0.68 = 0.81	between_species_paralog: LOC559448	4
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q4	/+	ENSP00000230671	SLC6A7	q4	q4	499.8	6	27973220	27988552	-1	11	76.3%	43.2%	1605	0.49 / 0.6 = 0.82	between_species_paralog: slc6a13	noData
---	q5	gapp	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000274599	ZNF300	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	q6	+/+	ENSP00000373477	GPX3	q6	q6	152.7	6	29193011	29195628	1	2	80.1%	47.4%	561	0.31 / 0.65 = 0.48	noComparaHits: gpx1b	3
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gape	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-

region 18

syntenyRegion: Danio_rerio.glob27.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 16247629:19538396 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=2.12 log_scoreRatio_sum=-1.44 focal_scoreRatio_sum=0.79
AlnScore=1349 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q1	/+	ENSP00000230671	SLC6A7	q1	q1	524.3	5	16328699	16354055	-1	11	77.4%	48.5%	1590	0.49 / 0.58 = 0.84	between_species_paralog: si:ch211-225b11.1	9
p15	q2	+/+	ENSP00000305090	CAMK2A	q2	q2	861	5	16477231	16570599	-1	16	93.9%	83%	1488	0.07 / 0.07 = 1	noComparaHits: A2BGW3_DANRE	1
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	q3	+/+	ENSP00000261797	NDST1	q3	q3	111.7	5	16679394	16680110	1	1	29%	33.8%	717	0.26 / 0.93 = 0.28	noComparaHits: hs3st1l2	noData
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 19

syntenyRegion: Danio_rerio.glob54.16.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 821012:4068156 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.03
AlnScore=179 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	+/+	ENSP00000305090	CAMK2A	q1	q1	166.9	16	827800	877501	-1	3	50.5%	36.9%	738	0.07 / 0.82 = 0.09	noComparaHits: snrk	noData
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20

syntenyRegion: Danio_rerio.glob52.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 25135723:28371094 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=1.06 log_scoreRatio_sum=-2.43 focal_scoreRatio_sum=0.13
AlnScore=352 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	/+	ENSP00000374676	NP_001001669.2	q1	q1	230.5	1	25414527	25428116	-1	5	69.9%	37%	1095	0.75 / 0.77 = 0.97	noComparaHits:	3
p5	---	gapq	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	/+	ENSP00000305090	CAMK2A	q2	q2	187.4	1	27029949	27137377	1	6	44.4%	40%	654	0.07 / 0.79 = 0.09	noComparaHits: LOC561941 ; ENSDARG00000033380	noData
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21

syntenyRegion: Danio_rerio.glob13.12.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 23587315:26845329 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.08 log_scoreRatio_sum=-2.52 focal_scoreRatio_sum=0.01
AlnScore=583 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	+/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	+/+	ENSP00000274599	ZNF300	q2	q2	330.3	12	23701131	23702195	1	1	58.8%	44.1%	1065	0.03 / 0.4 = 0.08	noComparaHits: si:rp71-1c10.3	1
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 22

syntenyRegion: Danio_rerio.glob12.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 65471280:68507616 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=2 log_scoreRatio_sum=-2.6 focal_scoreRatio_sum=0.59
AlnScore=815 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q1	/+	ENSP00000230671	SLC6A7	q1	q1	590.9	7	66037364	66055464	-1	12	83.8%	47%	1893	0.49 / 0.53 = 0.92	between_species_paralog: slc6a5	3
p15	q2	+/+	ENSP00000305090	CAMK2A	q2	q2	106.8	7	67424431	67425282	-1	1	58.9%	30%	852	0.07 / 0.88 = 0.08	noComparaHits: zgc:113355	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	q3	/+	ENSP00000297130	MYOZ3	q3	q3	126	7	67914096	67919642	-1	3	51.4%	44.6%	405	0.65 / 0.65 = 1	noComparaHits: myoz2	3
p22	q3	/+	ENSP00000314547	Q96MU4_HUMAN	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23

syntenyRegion: Danio_rerio.glob33.18.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 11885826:13719114 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=0.79 log_scoreRatio_sum=-2.75 focal_scoreRatio_sum=0.21
AlnScore=331 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000286301	CSF1R	q1	q1	220.3	18	13278471	13293488	1	6	29%	36.5%	858	0.61 / 0.87 = 0.7	noComparaHits: igf1ra	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	+/+	ENSP00000305090	CAMK2A	q2	q2	204.4	18	12430473	12444737	1	2	59.1%	38.9%	879	0.07 / 0.78 = 0.09	noComparaHits: si:ch211-201b11.4	noData
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 24

syntenyRegion: Danio_rerio.glob28.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 60440099:63417921 -f 22e5 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-2.77 focal_scoreRatio_sum=0.2
AlnScore=254 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000286301	CSF1R	q1	q1	201.4	5	63394460	63417921	1	5	20.8%	45.7%	606	0.61 / 0.88 = 0.69	noComparaHits: ddr2	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	/+	ENSP00000305090	CAMK2A	q2	q2	168.3	5	62006326	62035608	-1	5	34.8%	39.4%	549	0.07 / 0.81 = 0.09	noComparaHits: mapkapk5 ; zgc:153044 ; A2BGS1_DANRE	noData
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25

syntenyRegion: Danio_rerio.glob32.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 17422382:20653644 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0.09
AlnScore=606 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gapq	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000367072	CSNK1A1	q2	q2	331.5	8	18269462	18311612	1	7	80.8%	50.2%	948	0.36 / 0.54 = 0.67	between_species_paralog: zgc:153415	7
p4	---	gapq	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q3	+/+	ENSP00000305090	CAMK2A	q3	q3	177.4	8	18206603	18213993	1	5	34.2%	46.1%	525	0.07 / 0.8 = 0.09	noComparaHits: mknk2	noData
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26

syntenyRegion: Danio_rerio.glob36.2.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 15321218:18611197 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0.09
AlnScore=617 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000367072	CSNK1A1	q1	q1	331.8	2	18593187	18611197	1	7	78.8%	51.6%	894	0.36 / 0.54 = 0.67	between_species_paralog: csnk1g2	6
p4	---	gapq	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	+/+	ENSP00000305090	CAMK2A	q2	q2	183.7	2	18552545	18566247	1	5	34.8%	46.7%	531	0.07 / 0.8 = 0.09	noComparaHits: zgc:55587	noData
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27

syntenyRegion: Danio_rerio.glob48.4.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 4 -i 39610580:41950820 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=0.06 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0
AlnScore=478 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000367002	-	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q1	+/+	ENSP00000274599	ZNF300	q1	q1	266.3	4	41401926	41402927	1	1	55.1%	37.9%	1002	0.03 / 0.52 = 0.06	noComparaHits:	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 28

syntenyRegion: Danio_rerio.glob49.Zv7_NA1102.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1102 -i 64843:91759 -f 20e3 some_geneID_to_be_selected
scoreRatio_sum=0.06 log_scoreRatio_sum=-2.8 focal_scoreRatio_sum=0
AlnScore=473 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000367002	-	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q1	+/+	ENSP00000274599	ZNF300	q1	q1	263.4	Zv7_NA1102	64843	65949	-1	1	59.1%	38.1%	1107	0.03 / 0.52 = 0.06	noComparaHits:	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29

syntenyRegion: Danio_rerio.glob25.23.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 34908892:38210768 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.69 log_scoreRatio_sum=-2.91 focal_scoreRatio_sum=0.33
AlnScore=264 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	/+	ENSP00000261799	PDGFRB	q1	q1	205.2	23	38093158	38103634	-1	5	21.9%	43.9%	723	0.54 / 0.9 = 0.6	noComparaHits: src	noData
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	/+	ENSP00000305090	CAMK2A	q2	q2	188.9	23	37955542	37962321	-1	5	32.5%	51.2%	477	0.07 / 0.79 = 0.09	noComparaHits: zgc:73155	noData
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 30

syntenyRegion: Danio_rerio.glob46.13.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 14003000:16574417 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.05 log_scoreRatio_sum=-2.99 focal_scoreRatio_sum=0
AlnScore=401 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000367002	-	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q1	+/+	ENSP00000274599	ZNF300	q1	q1	223.3	13	14003471	14004229	-1	1	41.6%	42.9%	759	0.03 / 0.59 = 0.05	noComparaHits:	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 31

syntenyRegion: Danio_rerio.glob57.7.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 24704375:27756251 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=0.05 log_scoreRatio_sum=-2.99 focal_scoreRatio_sum=0
AlnScore=407 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000367002	-	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q1	+/+	ENSP00000274599	ZNF300	q1	q1	226.8	7	24704462	24705310	-1	1	46%	38.9%	849	0.03 / 0.59 = 0.05	noComparaHits: ENSDARG00000036043	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32

syntenyRegion: Danio_rerio.glob59.4.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 4 -i 33081865:35665151 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.05 log_scoreRatio_sum=-2.99 focal_scoreRatio_sum=0
AlnScore=435 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000367002	-	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q1	+/+	ENSP00000274599	ZNF300	q1	q1	244.8	4	34263055	34263846	1	1	43.9%	43.8%	792	0.03 / 0.56 = 0.05	noComparaHits:	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-

region 33

syntenyRegion: Danio_rerio.glob60.1.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 53269561:56200015 -f 22e5 some_geneID_to_be_selected
scoreRatio_sum=0.05 log_scoreRatio_sum=-2.99 focal_scoreRatio_sum=0
AlnScore=432 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000367002	-	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q1	+/+	ENSP00000274599	ZNF300	q1	q1	242.7	1	53269618	53270532	-1	1	50.7%	39.1%	915	0.03 / 0.56 = 0.05	noComparaHits: A0JPF0_DANRE	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 34

syntenyRegion: Danio_rerio.glob18.2.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 24602737:27885460 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=1.67 log_scoreRatio_sum=-3.04 focal_scoreRatio_sum=0.82
AlnScore=916 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	/+	ENSP00000305052	O95036_HUMAN	q1	q1	194.9	2	24611754	24612287	-1	2	58.9%	67.5%	465	0.05 / 0.59 = 0.08	ortholog_one2many: rpl7	2
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	/+	ENSP00000261799	PDGFRB	q3	q3	167.4	2	25784064	25799709	1	4	15.6%	42.8%	531	0.54 / 0.92 = 0.59	noComparaHits: yes1	noData
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q5	+/+	ENSP00000230671	SLC6A7	q5	q5	641.5	2	27833835	27849439	1	12	94%	46.9%	1965	0.49 / 0.49 = 1	between_species_paralog: slc6a9	1
p15	---	gape	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000274599	ZNF300	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 35

syntenyRegion: Danio_rerio.glob11.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 16206424:19459813 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.75 log_scoreRatio_sum=-3.17 focal_scoreRatio_sum=0.18
AlnScore=605 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000286301	CSF1R	q1	q1	203.9	16	18340901	18344771	-1	6	23.4%	41.8%	687	0.61 / 0.88 = 0.69	noComparaHits:	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	+/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	+/+	ENSP00000274599	ZNF300	q2	q2	292	16	19291043	19292065	-1	1	54.6%	44%	1023	0.03 / 0.47 = 0.06	noComparaHits: ENSDARG00000070472	3
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 36

syntenyRegion: Danio_rerio.glob21.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 4 -i 13948004:16416489 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.87 log_scoreRatio_sum=-3.18 focal_scoreRatio_sum=0.12
AlnScore=664 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000286298	SLC26A2	q1	q1	436.2	4	15381680	15394389	-1	11	56.6%	42.7%	1392	0.55 / 0.67 = 0.82	between_species_paralog: slc26a5	2
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	/+	ENSP00000274599	ZNF300	q3	q3	241.3	4	15341140	15342060	-1	1	51.8%	38.9%	921	0.03 / 0.56 = 0.05	noComparaHits: si:dkey-14k9.3	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 37

syntenyRegion: Danio_rerio.glob16.20.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 18424222:21609214 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=1.95 log_scoreRatio_sum=-3.31 focal_scoreRatio_sum=0.7
AlnScore=940 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000286301	CSF1R	q2	q2	728.3	20	20629061	20664337	1	16	71.9%	48.1%	2217	0.61 / 0.6 = 1.02	noComparaHits: kita	1
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000261799	PDGFRB	q3	q3	824.8	20	20538278	20564096	1	18	80.1%	44.5%	2823	0.54 / 0.61 = 0.89	noComparaHits: pdgfra	1
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q5	+/+	ENSP00000367002	-	noMatch	q5	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q5	+/+	ENSP00000274599	ZNF300	q5	q5	117.4	20	19536690	19537232	1	1	32%	33.8%	543	0.03 / 0.78 = 0.04	noComparaHits: znf513	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q6	gape	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-

region 38

syntenyRegion: Danio_rerio.glob23.2.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 424656:3647255 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-3.33 focal_scoreRatio_sum=0.3
AlnScore=530 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	/+	ENSP00000261799	PDGFRB	q1	q1	151.2	2	1409533	1415157	-1	4	17.8%	40.4%	570	0.54 / 0.92 = 0.59	noComparaHits: egfr	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q4	+/+	ENSP00000367002	-	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q4	+/+	ENSP00000274599	ZNF300	q4	q4	286	2	452588	453508	1	1	51%	45%	921	0.03 / 0.48 = 0.06	noComparaHits: LOC570723	5
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 39

syntenyRegion: Danio_rerio.glob24.22.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 265256:3521649 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-3.37 focal_scoreRatio_sum=0.17
AlnScore=464 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q1	q1	169.2	22	2641149	2645875	-1	4	16.4%	49.1%	459	0.61 / 0.9 = 0.68	noComparaHits:	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q5	+/+	ENSP00000367002	-	noMatch	q5	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q5	+/+	ENSP00000274599	ZNF300	q5	q5	245.8	22	414834	415574	1	1	40.9%	49.2%	741	0.03 / 0.55 = 0.05	noComparaHits: zgc:101130	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40

syntenyRegion: Danio_rerio.glob29.15.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 15 -i 36039557:39313335 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-3.37 focal_scoreRatio_sum=0.17
AlnScore=444 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q1	q1	181.2	15	36858959	36894847	1	5	25.1%	38.4%	726	0.61 / 0.9 = 0.68	noComparaHits: rtk4	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	/+	ENSP00000274599	ZNF300	q2	q2	240.9	15	37150617	37151414	1	1	44%	43.1%	798	0.03 / 0.56 = 0.05	noComparaHits: ENSDARG00000053800	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 41

syntenyRegion: Danio_rerio.glob44.14.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 36054866:38460105 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=1.84 log_scoreRatio_sum=-3.44 focal_scoreRatio_sum=1.23
AlnScore=953 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q1	q1	374.3	14	37421436	37455813	-1	11	34.2%	51%	1032	0.61 / 0.79 = 0.77	noComparaHits: kdr	10
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q2	+/+	ENSP00000231656	CDX1	q2	q2	215.1	14	37387109	37389654	-1	3	93.2%	48.1%	780	0.39 / 0.38 = 1.03	between_species_paralog: cdx4	1
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	+/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	+/+	ENSP00000274599	ZNF300	q4	q3	103.8	14	36259179	36261063	1	2	33.8%	34.2%	624	0.03 / 0.81 = 0.04	noComparaHits: zic6	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 42

syntenyRegion: Danio_rerio.glob02.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 55773227:58825258 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=2.43 log_scoreRatio_sum=-3.57 focal_scoreRatio_sum=0.54
AlnScore=2238 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	/+	ENSP00000367072	CSNK1A1	q1	q1	356	7	58766074	58825258	-1	8	80.8%	54.7%	921	0.36 / 0.51 = 0.71	between_species_paralog: zgc:101563	5
p4	---	gapq	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000255266	PDE6A	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	+/+	ENSP00000305090	CAMK2A	q2	q2	827.1	7	56726986	56877714	1	15	90%	85.9%	1377	0.07 / 0.11 = 0.64	between_species_paralog: camk2db	5
p16	q3	+/+	ENSP00000333395	ARSI	q3	q3	573.6	7	56688282	56689718	1	1	84%	60%	1437	0.49 / 0.48 = 1.02	noComparaHits:	3
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gapp	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q6	/+	ENSP00000367002	-	noMatch	q6	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q6	/+	ENSP00000274599	ZNF300	q6	q6	282.4	7	55773260	55774552	-1	1	69.7%	35%	1293	0.03 / 0.49 = 0.06	noComparaHits:	6
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43

syntenyRegion: Danio_rerio.glob55.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 13689658:16726087 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-3.7 focal_scoreRatio_sum=0.31
AlnScore=281 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000261799	PDGFRB	q1	q1	239.3	17	13689664	13723637	-1	7	27.5%	38.3%	963	0.54 / 0.88 = 0.61	noComparaHits: ros1	noData
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	/+	ENSP00000274599	ZNF300	q2	q2	121.4	17	16724780	16726087	1	2	22.5%	44.3%	414	0.03 / 0.78 = 0.04	noComparaHits: A2CE94_DANRE	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 44

syntenyRegion: Danio_rerio.glob56.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 32273570:34858619 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=1.14 log_scoreRatio_sum=-3.7 focal_scoreRatio_sum=0.35
AlnScore=498 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	/+	ENSP00000261799	PDGFRB	q1	q1	132	11	33243024	33246772	1	3	11.8%	47.9%	405	0.54 / 0.93 = 0.58	noComparaHits: ENSDARG00000004871	noData
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	/+	ENSP00000305090	CAMK2A	q2	q2	175.3	11	33439392	33446088	1	5	35.2%	43.5%	558	0.07 / 0.81 = 0.09	noComparaHits: camkv	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000367002	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000274599	ZNF300	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	q3	/+	ENSP00000373477	GPX3	q3	q3	149.8	11	34059383	34061402	-1	2	85%	41.8%	594	0.31 / 0.66 = 0.47	noComparaHits: gpx1a	4
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 45

syntenyRegion: Danio_rerio.glob19.2.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 30797845:34046416 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-3.73 focal_scoreRatio_sum=0.47
AlnScore=571 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q2	q1	160.4	2	33224938	33236050	-1	4	20.4%	37.4%	591	0.61 / 0.91 = 0.67	noComparaHits: ENSDARG00000011600	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	/+	ENSP00000261799	PDGFRB	q2	q2	186.6	2	32783706	32804057	-1	5	17.9%	41.7%	591	0.54 / 0.91 = 0.59	noComparaHits: epha4a	noData
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	/+	ENSP00000274599	ZNF300	q3	q3	276.5	2	31706532	31707599	-1	1	58.9%	36.1%	1068	0.03 / 0.5 = 0.06	noComparaHits: ENSDARG00000026972	8
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 46

syntenyRegion: Danio_rerio.glob42.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 21652342:24844330 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=1.53 log_scoreRatio_sum=-3.8 focal_scoreRatio_sum=0.48
AlnScore=726 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	/+	ENSP00000286298	SLC26A2	q1	q1	357.9	8	24680947	24695755	1	10	68.2%	34.3%	1605	0.55 / 0.73 = 0.75	between_species_paralog: LOC100005108	7
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q3	/+	ENSP00000230671	SLC6A7	q3	q3	433.5	8	23287567	23312860	1	9	74.4%	42.5%	1509	0.49 / 0.66 = 0.74	between_species_paralog: LOC798635	noData
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q5	+/+	ENSP00000367002	-	noMatch	q5	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q5	+/+	ENSP00000274599	ZNF300	q5	q5	133.7	8	22780262	22793719	1	4	23.8%	33.8%	459	0.03 / 0.75 = 0.04	noComparaHits: ENSDARG00000068818	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q6	gape	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gape	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-

region 47

syntenyRegion: Danio_rerio.glob14.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 61768:3261269 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-4.11 focal_scoreRatio_sum=0.47
AlnScore=328 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q1	q1	206.7	10	3100580	3102703	-1	3	25.9%	42.8%	756	0.61 / 0.88 = 0.69	noComparaHits: musk	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	/+	ENSP00000261799	PDGFRB	q1	q2	168.4	10	2982325	2986276	-1	4	18.9%	40.3%	627	0.54 / 0.92 = 0.59	noComparaHits: syk	noData
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q4	/+	ENSP00000367002	-	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q4	/+	ENSP00000274599	ZNF300	q4	q4	121.2	10	1876824	1877348	-1	1	27.8%	35.2%	525	0.03 / 0.78 = 0.04	noComparaHits: hic2	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 48

syntenyRegion: Danio_rerio.glob45.13.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 2708088:4884519 -f 16e5 some_geneID_to_be_selected
scoreRatio_sum=0.39 log_scoreRatio_sum=-4.26 focal_scoreRatio_sum=0.05
AlnScore=339 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000255266	PDE6A	q1	q1	264.5	13	3473327	3486390	1	7	38.3%	38.2%	999	0.29 / 0.84 = 0.35	between_species_paralog: pde10a	8
p7	---	gapq	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	/+	ENSP00000274599	ZNF300	q2,q3	q2	139.2	13	2767663	2768562	-1	1	51.2%	30.1%	900	0.03 / 0.74 = 0.04	noComparaHits:	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-

region 49

syntenyRegion: Danio_rerio.glob10.13.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 39190571:42475761 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.37 log_scoreRatio_sum=-4.32 focal_scoreRatio_sum=0.04
AlnScore=383 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p20	q2	/+	ENSP00000261797	NDST1	q2	q2	367.3	13	41652827	41653771	1	1	36%	62%	945	0.26 / 0.79 = 0.33	between_species_paralog: LOC562911	7
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gapp	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q6	+/+	ENSP00000367002	-	noMatch	q6	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q6	+/+	ENSP00000274599	ZNF300	q6	q6	138.8	13	40857842	40858372	1	1	28.3%	41%	531	0.03 / 0.75 = 0.04	noComparaHits: A2CEY2_DANRE	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gape	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-

region 50

syntenyRegion: Danio_rerio.glob34.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 4 -i 3485952:6017492 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.16 log_scoreRatio_sum=-5.11 focal_scoreRatio_sum=0.04
AlnScore=702 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	/+	ENSP00000305090	CAMK2A	q1	q1	293.4	4	5512623	5682486	-1	9	62.4%	42.9%	990	0.07 / 0.68 = 0.1	noComparaHits: zgc:77868 ; si:ch211-240l19.1 ; si:ch211-240l19.5 ; si:ch211-220p15.9 ; si:ch211-240l19.1	8
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	/+	ENSP00000274599	ZNF300	q2	q2	271.9	4	3999461	4000435	-1	1	53.8%	42.9%	975	0.03 / 0.51 = 0.06	noComparaHits:	9
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 51

syntenyRegion: Danio_rerio.glob15.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 27307190:30586241 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.15 log_scoreRatio_sum=-5.21 focal_scoreRatio_sum=0.03
AlnScore=781 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	/+	ENSP00000305052	O95036_HUMAN	q1	q1	198.9	20	30585014	30586241	1	3	63.7%	60.1%	492	0.05 / 0.58 = 0.09	between_species_paralog: rpl7l1	1
p12	---	gapq	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000305090	CAMK2A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	/+	ENSP00000274599	ZNF300	q2	q2	271.5	20	29297404	29298243	-1	1	46.4%	44.8%	840	0.03 / 0.51 = 0.06	noComparaHits: ENSDARG00000057324	10
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-

region 52

syntenyRegion: Danio_rerio.glob20.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 25 -i 14922822:18101843 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.15 log_scoreRatio_sum=-5.21 focal_scoreRatio_sum=0.03
AlnScore=628 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	/+	ENSP00000305090	CAMK2A	q2	q2	164.4	25	17543120	17557589	1	3	50.3%	37.2%	732	0.07 / 0.82 = 0.09	noComparaHits: zgc:73231	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	+/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	+/+	ENSP00000274599	ZNF300	q3	q3	277.9	25	17705813	17706997	-1	1	64.2%	35%	1185	0.03 / 0.5 = 0.06	noComparaHits: LOC792588	7
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 53

syntenyRegion: Danio_rerio.glob17.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 15 -i 22608321:25892748 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=-5.26 focal_scoreRatio_sum=0.47
AlnScore=1072 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q1	/+	ENSP00000230671	SLC6A7	q1	q1	548.3	15	25825617	25833382	1	12	83%	44.3%	1845	0.49 / 0.57 = 0.86	between_species_paralog: slc6a4a	6
p15	q2	/+	ENSP00000305090	CAMK2A	q2	q2	253.8	15	25013105	25019224	-1	7	54%	44.2%	801	0.07 / 0.72 = 0.1	noComparaHits:	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	/+	ENSP00000274599	ZNF300	q3	q3	287.7	15	22622597	22623685	-1	1	59.3%	40.9%	1089	0.03 / 0.48 = 0.06	noComparaHits:	4
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 54

syntenyRegion: Danio_rerio.glob37.16.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 5243121:7843155 -f 20e5 some_geneID_to_be_selected
scoreRatio_sum=0.14 log_scoreRatio_sum=-5.39 focal_scoreRatio_sum=0.03
AlnScore=514 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	/+	ENSP00000305090	CAMK2A	q1	q1	164.5	16	5243121	5387882	1	3	49.9%	36.5%	729	0.07 / 0.82 = 0.09	noComparaHits: SNRK (2 of 2) ; zgc:123188 ; LOC792777	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	+/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	+/+	ENSP00000274599	ZNF300	q2	q2	209.2	16	7727732	7728775	-1	1	58.8%	36.1%	1044	0.03 / 0.62 = 0.05	noComparaHits:	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 55

syntenyRegion: Danio_rerio.glob22.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 52637913:55728948 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-5.51 focal_scoreRatio_sum=0.03
AlnScore=559 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	+/+	ENSP00000305090	CAMK2A	q1	q1	136.4	6	55721944	55728948	1	4	28.2%	46.6%	423	0.07 / 0.85 = 0.08	noComparaHits:	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	+/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	+/+	ENSP00000274599	ZNF300	q2	q2	243.4	6	55193645	55194487	1	1	46.4%	42.9%	843	0.03 / 0.56 = 0.05	noComparaHits:	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-

region 56

syntenyRegion: Danio_rerio.glob30.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 22755146:26051859 -f 25e5 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-5.62 focal_scoreRatio_sum=0.03
AlnScore=336 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	+/+	ENSP00000305090	CAMK2A	q1	q1	188.3	24	22767377	22774753	-1	5	42.5%	37.4%	651	0.07 / 0.79 = 0.09	noComparaHits: zgc:158386	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q4	/+	ENSP00000367002	-	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q4	/+	ENSP00000274599	ZNF300	q4	q4	110.5	24	25001722	25002151	1	2	12.7%	49.1%	318	0.03 / 0.8 = 0.04	noComparaHits: mynn	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gape	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-

region 57

syntenyRegion: Danio_rerio.glob39.2.minQN1.fac2.05.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 34635139:37870900 -f 24e5 some_geneID_to_be_selected
scoreRatio_sum=0.13 log_scoreRatio_sum=-5.62 focal_scoreRatio_sum=0.03
AlnScore=378 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	+/+	ENSP00000305090	CAMK2A	q1	q1	184.8	2	35323269	35327460	1	5	49.3%	34.8%	786	0.07 / 0.8 = 0.09	noComparaHits:	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	/+	ENSP00000274599	ZNF300	q3	q3	132.8	2	34723766	34724407	-1	1	37.3%	35%	642	0.03 / 0.76 = 0.04	noComparaHits: zgc:100957	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 58

syntenyRegion: Danio_rerio.glob41.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 39566037:42659182 -f 23e5 some_geneID_to_be_selected
scoreRatio_sum=0.12 log_scoreRatio_sum=-5.73 focal_scoreRatio_sum=0.03
AlnScore=342 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000286301	CSF1R	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000261799	PDGFRB	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q1	/+	ENSP00000305090	CAMK2A	q1	q1	151.8	17	40459466	40468778	1	3	55.2%	32.2%	789	0.07 / 0.83 = 0.08	noComparaHits: plk4	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	+/+	ENSP00000367002	-	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q2	+/+	ENSP00000274599	ZNF300	q2	q2	120.5	17	41447765	41448061	-1	1	16.4%	55%	297	0.03 / 0.78 = 0.04	noComparaHits:	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 59

syntenyRegion: Danio_rerio.glob31.22.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 6662079:9314694 -f 20e5 some_geneID_to_be_selected
scoreRatio_sum=0.84 log_scoreRatio_sum=-5.87 focal_scoreRatio_sum=0.21
AlnScore=541 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q1	q1	231	22	8533889	8536494	-1	6	27.6%	38.8%	840	0.61 / 0.87 = 0.7	noComparaHits: insrb	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q3	+/+	ENSP00000305090	CAMK2A	q3	q3	266	22	7384883	7476513	1	8	50.9%	45.4%	783	0.07 / 0.71 = 0.1	noComparaHits: ENSDARG00000071563 ; irf6 ; camk1g ; btg2 ; LOC572057	10
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q4	/+	ENSP00000367002	-	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q4	/+	ENSP00000274599	ZNF300	q4	q4	114.5	22	6865732	6866106	-1	1	20.5%	46%	375	0.03 / 0.79 = 0.04	noComparaHits:	noData
p27	---	gapq	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gapq	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gape	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-

region 60

syntenyRegion: Danio_rerio.glob26.20.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 16043:2595621 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.83 log_scoreRatio_sum=-5.97 focal_scoreRatio_sum=0.21
AlnScore=517 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000231656 (contained in p13)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000261796	IL17B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000261798	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000367072	CSNK1A1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000374676	NP_001001669.2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000312649	PPARGC1B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000255266	PDE6A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000286298	SLC26A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000296736	TIGD6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000261804	SMF_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000286301	CSF1R	q1	q1	223.9	20	16043	23405	1	5	31.5%	39.1%	933	0.61 / 0.87 = 0.7	noComparaHits: LOC567549	noData
p11	---	gapq	ENSP00000305052	O95036_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000261799	PDGFRB	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000231656	CDX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000230671	SLC6A7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	q2	+/+	ENSP00000305090	CAMK2A	q2	q2	165.9	20	954561	1022381	-1	5	59.3%	33.2%	840	0.07 / 0.82 = 0.09	noComparaHits: si:dkey-181i3.3 ; lats1 ; ankrd6 ; zgc:63554	noData
p16	---	gapq	ENSP00000333395	ARSI	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000314349	TCOF1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000009530	CD74	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000311028	RPS14	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000261797	NDST1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000315289	SYNPO	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000297130	MYOZ3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000314547	Q96MU4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000199814	RBM22	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000255263	DCTN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000322424	NM_032947.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q3	/+	ENSP00000367002	-	noMatch	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p26	q3	/+	ENSP00000274599	ZNF300	q3	q3	159.2	20	2572336	2572863	1	1	28.6%	41.8%	528	0.03 / 0.71 = 0.04	noComparaHits: zgc:101562	noData
p27	---	gape	ENSP00000373477	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p28	---	gape	ENSP00000373478	GPX3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for C4_CDX1_ENSG00000113722_1e6.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	2550	25.63	5.27	3.27	Danio_rerio	21
2	1796	9.99	0.79	0.86	Danio_rerio	14
3	670	2.42	0.32	0.53	Danio_rerio	Zv7_NA3207
4	1107	2.31	0.18	1.16	Danio_rerio	21	43615612	43626244	2	81.1%	46.1%	1	172	ortholog_one2one: CDX1
5	1183	2.1	0.1	0.28	Danio_rerio	21
6	1514	4.1	0.03	0.48	Danio_rerio	14
7	991	1.93	-0.06	0.36	Danio_rerio	1
8	361	0.86	-0.14	0.43	Danio_rerio	20
9	1173	1.77	-0.24	0.19	Danio_rerio	12
10	108	0.69	-0.36	0.17	Danio_rerio	6
11	846	1.63	-0.41	1.19	Danio_rerio	14	25691140	25714598	3	84.9%	45.8%	-1	163	noComparaHits: cdx1a
12	472	0.56	-0.57	0.07	Danio_rerio	12
13	439	1.48	-0.6	0.54	Danio_rerio	24
14	2006	2.46	-0.88	0.54	Danio_rerio	13
15	589	1.28	-0.89	0.93	Danio_rerio	16	15953566	15954702	2	58.9%	37.6%	-1	105.1	noComparaHits: hoxa2b
16	236	0.38	-0.96	0.05	Danio_rerio	9
17	935	2.11	-1.13	0.56	Danio_rerio	6
18	1349	2.12	-1.44	0.79	Danio_rerio	5
19	179	0.09	-2.4	0.03	Danio_rerio	16
20	352	1.06	-2.43	0.13	Danio_rerio	1
21	583	0.08	-2.52	0.01	Danio_rerio	12
22	815	2	-2.6	0.59	Danio_rerio	7
23	331	0.79	-2.75	0.21	Danio_rerio	18
24	254	0.78	-2.77	0.2	Danio_rerio	5
25	606	0.76	-2.8	0.09	Danio_rerio	8
26	617	0.76	-2.8	0.09	Danio_rerio	2
27	478	0.06	-2.8	0	Danio_rerio	4
28	473	0.06	-2.8	0	Danio_rerio	Zv7_NA1102
29	264	0.69	-2.91	0.33	Danio_rerio	23
30	401	0.05	-2.99	0	Danio_rerio	13
31	407	0.05	-2.99	0	Danio_rerio	7
32	435	0.05	-2.99	0	Danio_rerio	4
33	432	0.05	-2.99	0	Danio_rerio	1
34	916	1.67	-3.04	0.82	Danio_rerio	2
35	605	0.75	-3.17	0.18	Danio_rerio	16
36	664	0.87	-3.18	0.12	Danio_rerio	4
37	940	1.95	-3.31	0.7	Danio_rerio	20
38	530	0.65	-3.33	0.3	Danio_rerio	2
39	464	0.73	-3.37	0.17	Danio_rerio	22
40	444	0.73	-3.37	0.17	Danio_rerio	15
41	953	1.84	-3.44	1.23	Danio_rerio	14	37387109	37389654	3	93.2%	48.1%	-1	215.1	between_species_paralog: cdx4
42	2238	2.43	-3.57	0.54	Danio_rerio	7
43	281	0.65	-3.7	0.31	Danio_rerio	17
44	498	1.14	-3.7	0.35	Danio_rerio	11
45	571	1.32	-3.73	0.47	Danio_rerio	2
46	726	1.53	-3.8	0.48	Danio_rerio	8
47	328	1.32	-4.11	0.47	Danio_rerio	10
48	339	0.39	-4.26	0.05	Danio_rerio	13
49	383	0.37	-4.32	0.04	Danio_rerio	13
50	702	0.16	-5.11	0.04	Danio_rerio	4
51	781	0.15	-5.21	0.03	Danio_rerio	20
52	628	0.15	-5.21	0.03	Danio_rerio	25
53	1072	1.02	-5.26	0.47	Danio_rerio	15
54	514	0.14	-5.39	0.03	Danio_rerio	16
55	559	0.13	-5.51	0.03	Danio_rerio	6
56	336	0.13	-5.62	0.03	Danio_rerio	24
57	378	0.13	-5.62	0.03	Danio_rerio	2
58	342	0.12	-5.73	0.03	Danio_rerio	17
59	541	0.84	-5.87	0.21	Danio_rerio	22
60	517	0.83	-5.97	0.21	Danio_rerio	20