>creating p-loci data structure...done -> selfscore (ENSP00000261796) successfully validated... -> selfscore (ENSP00000261798) successfully validated... -> selfscore (ENSP00000367072) successfully validated... -> selfscore (ENSP00000374676) successfully validated... -> selfscore (ENSP00000312649) successfully validated... -> selfscore (ENSP00000255266) successfully validated... -> selfscore (ENSP00000286298) successfully validated... -> selfscore (ENSP00000296736) successfully validated... -> selfscore (ENSP00000261804) successfully validated... -> selfscore (ENSP00000286301) successfully validated... WARNING: Best-reference-hit is not on the same chromosome/contig as the reference! -> the selfscore for query protein "ENSP00000305052" is NOT valid! -> selfscore (ENSP00000261799) successfully validated... -> selfscore (ENSP00000231656) successfully validated... -> selfscore (ENSP00000230671) successfully validated... -> selfscore (ENSP00000305090) successfully validated... -> selfscore (ENSP00000333395) successfully validated... -> selfscore (ENSP00000314349) successfully validated... -> selfscore (ENSP00000009530) successfully validated... -> selfscore (ENSP00000311028) successfully validated... -> selfscore (ENSP00000261797) successfully validated... -> selfscore (ENSP00000315289) successfully validated... -> selfscore (ENSP00000297130) successfully validated... -> selfscore (ENSP00000314547) successfully validated... -> selfscore (ENSP00000199814) successfully validated... -> selfscore (ENSP00000255263) successfully validated... -> selfscore (ENSP00000322424) successfully validated... WARNING: Best-reference-hit is not on the same chromosome/contig as the reference! -> the selfscore for query protein "ENSP00000274599" is NOT valid! -> selfscore (ENSP00000367002) successfully validated... -> selfscore (ENSP00000373477) successfully validated... -> selfscore (ENSP00000373478) successfully validated... >fetching global-besthit data for all queries against Danio_rerio...>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000261798"! (getBestBlastHit) >warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000314547"! (getBestBlastHit) >warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000322424"! (getBestBlastHit) >warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000373478"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000127743, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000113712, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000183111, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000155846, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000132915, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000155850, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000164296, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000113716, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182578, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000169216, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000113721, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000113722, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000011083, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000070808, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000183876, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000070814, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000019582, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000164587, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000070614, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000171992, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000164591, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000177512, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000086589, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000132912, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000181368, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000145908, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000204891, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000211445, targetOrg=Danio_rerio)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Note: comparaResult did not give exactly one result type! >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...Argument "Zv7_NA3207" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Zv7_NA3207" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Zv7_NA3207" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...Argument "Zv7_NA1102" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Zv7_NA1102" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >chaining blast-hits together...done >calculating gene order alignments...done Argument "NoData" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 893. >"ENSG00000113722-homologs/comparaHits/Danio_rerio.ENSDARP00000076430.fa" did already exist, skip downloading... >"ENSG00000113722-homologs/unknownHits/Danio_rerio.ENSDARP00000096679.fa" did already exist, skip downloading... >"ENSG00000113722-homologs/unknownHits/Danio_rerio.ENSDARP00000023072.fa" did already exist, skip downloading... >"ENSG00000113722-homologs/comparaHits/Danio_rerio.ENSDARP00000052708.fa" did already exist, skip downloading...