>creating p-loci data structure...done
 -> selfscore (ENSP00000349197) successfully validated...
 -> selfscore (ENSP00000327693) successfully validated...
 -> selfscore (ENSP00000362781) successfully validated...
 -> selfscore (ENSP00000324208) successfully validated...
 -> selfscore (ENSP00000218432) successfully validated...
 -> selfscore (ENSP00000334675) successfully validated...
 -> selfscore (ENSP00000362744) successfully validated...
 -> selfscore (ENSP00000362721) successfully validated...
 -> selfscore (ENSP00000362674) successfully validated...
 -> selfscore (ENSP00000362640) successfully validated...
 -> selfscore (ENSP00000334501) successfully validated...
 -> selfscore (ENSP00000348411) successfully validated...
 -> selfscore (ENSP00000362624) successfully validated...
 -> selfscore (ENSP00000362621) successfully validated...
 -> selfscore (ENSP00000362617) successfully validated...
 -> selfscore (ENSP00000362616) successfully validated...
 -> selfscore (ENSP00000362613) successfully validated...
 -> selfscore (ENSP00000362603) successfully validated...
 -> selfscore (ENSP00000362594) successfully validated...
WARNING: Best-reference-hit is not on the same chromosome/contig as the reference!
 -> the selfscore for query protein "ENSP00000362593" is NOT valid!
WARNING: Best-reference-hit is not on the same chromosome/contig as the reference!
 -> the selfscore for query protein "ENSP00000362589" is NOT valid!
 -> selfscore (ENSP00000362587) successfully validated...
 -> selfscore (ENSP00000362585) successfully validated...
 -> selfscore (ENSP00000276033) successfully validated...
 -> selfscore (ENSP00000328059) successfully validated...
WARNING: Best-reference-hit is not on the same chromosome/contig as the reference!
 -> the selfscore for query protein "ENSP00000346698" is NOT valid!
 -> selfscore (ENSP00000362567) successfully validated...
>fetching global-besthit data for all queries against Danio_rerio...>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000334501"! (getBestBlastHit)
>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000348411"! (getBestBlastHit)
>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000362624"! (getBestBlastHit)
>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000362594"! (getBestBlastHit)
>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000362593"! (getBestBlastHit)
>warning: tblastn/allParahox.Danio_rerio.blastresult contains no data (at least for query "ENSP00000346698"! (getBestBlastHit)
done
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000196933, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000183551, targetOrg=Danio_rerio)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204131, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198359, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000102309, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000186871, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000198034, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000125931, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000147099, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000067177, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184911, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204119, targetOrg=Danio_rerio)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000184388, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204118, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000186462, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000131264, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204116, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000182707, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204115, targetOrg=Danio_rerio)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204114, targetOrg=Danio_rerio)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000204113, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000187969, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000147100, targetOrg=Danio_rerio)...ok
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000131263, targetOrg=Danio_rerio)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000197501, targetOrg=Danio_rerio)...none
>fetching EnsemblCompara-homologs for (GeneID=ENSG00000050030, targetOrg=Danio_rerio)...ok
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "Zv7_NA3324" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
Argument "Zv7_NA3324" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "Zv7_NA817" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
Argument "Zv7_NA817" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "Zv7_NA1092" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
Argument "Zv7_NA1092" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150.
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "Zv7_NA1164" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "Zv7_scaffold2511" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
>chaining blast-hits together...done
>calculating gene order alignments...Argument "Zv7_NA1282" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465.
done
Argument "Zv7_NA1282" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150.
>"ENSG00000131264-homologs/comparaHits/Danio_rerio.ENSDARP00000052708.fa" did already exist, skip downloading...
>"ENSG00000131264-homologs/comparaHits/Danio_rerio.ENSDARP00000076430.fa" did already exist, skip downloading...