C2_CDX4_ENSG00000131264_15e5.protein.info Alignment Results

Data table for reference protein loci

QueryProtein(s)=ENSP00000362613 (contained in p17)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	RPS26L1	ENSP00000349197	ENST00000356756	ENSG00000196933	RS26L_HUMAN	X	71181120	71181467	71181288	1	1	115	222.3
p2	RGAG4	ENSP00000327693	ENST00000327971	ENSG00000183551	RGAG4_HUMAN	X	71266406	71268115	71267255	-1	1	569	931
p3	NP_001013649.1	ENSP00000362781	ENST00000373677	ENSG00000204131	NP_001013649.1	X	71275222	71277351	71276281	1	1	709	1297.3
p4	TPT1L_HUMAN	ENSP00000324208	ENST00000317148	ENSG00000198359	TPT1L_HUMAN	X	71296408	71296827	71296612	1	1	139	256
p5	PIN4	ENSP00000218432	ENST00000218432	ENSG00000102309	PIN4_HUMAN	X	71318286	71334101	71333399	1	4	156	314.8
p6	NP_001009954.1	ENSP00000334675	ENST00000334463	ENSG00000186871	NP_060139.2	X	71341589	71375486	71343461	-1	2	1250	2266.9
p7	RPS4X	ENSP00000362744	ENST00000316084	ENSG00000198034	RS4X_HUMAN	X	71409246	71413770	71410506	-1	7	263	518.2
p8	CITED1	ENSP00000362721	ENST00000373619	ENSG00000125931	CITE1_HUMAN	X	71438298	71439444	71438583	-1	2	193	356.1
p9	HDAC8	ENSP00000362674	ENST00000373573	ENSG00000147099	-	X	71466629	71709336	71627559	-1	12	378	765.6
p10	PHKA1	ENSP00000362640	ENST00000373539	ENSG00000067177	hCG_18635	X	71717577	71850453	71759778	-1	33	1240	2427.5
p11	CXorf50	ENSP00000348411	ENST00000356102	ENSG00000184911	Q8TAW5_HUMAN	X	71914186	71914485	71914330	1	1	99	185.3
p12	CXorf50	ENSP00000334501	ENST00000334036	ENSG00000184911	DMRTC_HUMAN	X	71981695	71984934	71983472	1	6	192	354.5
p13	-	ENSP00000362624	ENST00000373524	ENSG00000204119	-	X	72074828	72075398	72075119	1	3	79	166.5
p14	RBM32B	ENSP00000362621	ENST00000373521	ENSG00000184388	NP_001035971.1	X	72140207	72140809	72140504	1	1	200	371.9
p15	NAP1L6	ENSP00000362617	ENST00000373518	ENSG00000204118	XR_017910.1	X	72264123	72264446	72264279	-1	1	107	196.2
p16	NAP1L2	ENSP00000362616	ENST00000373517	ENSG00000186462	NP1L2_HUMAN	X	72349671	72351053	72350358	-1	1	460	844.6
p17	CDX4	ENSP00000362613	ENST00000373514	ENSG00000131264	CDX4_HUMAN	X	72583815	72591146	72584238	1	3	284	557.3
p18	CHIC1	ENSP00000362603	ENST00000373504	ENSG00000204116	CHIC1_HUMAN	X	72699867	72817565	72714014	1	6	217	375
p19	FXYD8	ENSP00000362594	ENST00000373495	ENSG00000182707	FXYD8_HUMAN	X	73011628	73012195	73011766	1	2	94	181.2
p20	Q6ZNG4_HUMAN	ENSP00000362593	ENST00000373494	ENSG00000204115	Q6ZNG4_HUMAN	X	73261751	73263942	73261901	-1	2	102	64.5
p21	USMG5P1	ENSP00000362589	ENST00000373490	ENSG00000204114	-	X	73310450	73310626	73310534	1	1	58	112.2
p22	BMP2KL	ENSP00000362587	ENST00000373488	ENSG00000204113	Q5H9B9_HUMAN	X	73322489	73323715	73323098	1	1	408	757
p23	ZCCHC13	ENSP00000362585	ENST00000373486	ENSG00000187969	ZCH13_HUMAN	X	73440827	73441327	73441073	1	1	166	341.9
p24	SLC16A2	ENSP00000276033	ENST00000276033	ENSG00000147100	MOT8_HUMAN	X	73557976	73668113	73661037	1	6	613	892
p25	Q9H3B5_HUMAN	ENSP00000346698	ENST00000354671	ENSG00000197501	Q9H3B5_HUMAN	X	73723418	73723591	73723499	1	1	57	80.8
p26	RNF12	ENSP00000328059	ENST00000332687	ENSG00000131263	RNF12_HUMAN	X	73728000	73732537	73728933	-1	3	624	1095.2
p27	KIAA2022	ENSP00000362567	ENST00000373468	ENSG00000050030	K2022_HUMAN	X	73875965	73882210	73878837	-1	3	1516	2755.9

total length of ref-loci (on slice) = 2701091 (27e5)

region 1

syntenyRegion: Danio_rerio.glob03.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49033751:51630791 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=10.34 log_scoreRatio_sum=2.53 focal_scoreRatio_sum=0.99
AlnScore=2934 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	/+	ENSP00000362781	NP_001013649.1	q1	q1	300.6	7	50414076	50416133	1	2	81.2%	38.2%	1761	0.85 / 0.76 = 1.12	noComparaHits:	1
p4	---	gapq	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q2	+/+	ENSP00000362744	RPS4X	q2	q2	496.8	7	50250999	50256275	1	6	99.2%	92%	804	0.21 / 0.04 = 5.25	ortholog_one2many: rps4x	1
p8	q3	+/+	ENSP00000362721	CITED1	q3	q3	130.7	7	50245978	50246436	1	1	87%	51.8%	459	0.73 / 0.63 = 1.16	noComparaHits:	1
p9	q4	+/+	ENSP00000362674	HDAC8	q4	q4	529	7	50179948	50212664	1	8	84.4%	69.7%	1056	0.53 / 0.3 = 1.77	ortholog_one2one: hdac8	1
p10	q5	+/+	ENSP00000362640	PHKA1	q5	q5	1742.9	7	50140282	50176672	1	30	96.5%	67.9%	3810	0.29 / 0.28 = 1.04	ortholog_one2many: LOC793016	1
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 2

syntenyRegion: Danio_rerio.glob05.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 32236088:37617628 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=2.53 log_scoreRatio_sum=0.47 focal_scoreRatio_sum=1.92
AlnScore=1192 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q1	+/+	ENSP00000362613	CDX4	q1	q1	254.3	14	37387100	37389654	-1	3	95.4%	51.2%	789	0.7 / 0.54 = 1.3	ortholog_one2one: cdx4	1
p18	q2	+/+	ENSP00000362603	CHIC1	q2	q2	276.3	14	37377724	37384466	-1	5	74.2%	68.4%	579	0.32 / 0.26 = 1.23	ortholog_one2one: Q2YDQ7_DANRE	1
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 3

syntenyRegion: Danio_rerio.glob14.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 35771119:36609028 -f 63e4 some_geneID_to_be_selected
scoreRatio_sum=0.87 log_scoreRatio_sum=-1.67 focal_scoreRatio_sum=0.08
AlnScore=940 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000349197	RPS26L1	q1	q1	191.8	6	36608626	36609028	-1	2	92.2%	78.8%	387	0.05 / 0.13 = 0.38	ortholog_many2many: rps26l	1
p2	---	gapq	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q2	/+	ENSP00000276033	SLC16A2	q2	q2	121.7	6	35790256	35807454	1	2	53.3%	23.1%	981	0.42 / 0.86 = 0.49	between_species_paralog: LOC556386	noData
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 4

syntenyRegion: Danio_rerio.glob01.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 3937633:9217772 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=2.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.27
AlnScore=789 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000362674	HDAC8	q1	q1	320.2	14	7732266	8195158	1	10	74.3%	43.1%	987	0.53 / 0.58 = 0.91	between_species_paralog: hdac3	3
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q2	+/+	ENSP00000328059	RNF12	q2	q2	320.3	14	7202567	7204408	1	2	91%	40.5%	1746	0.5 / 0.7 = 0.71	noComparaHits:	1
p27	q3	+/+	ENSP00000362567	KIAA2022	q3	q3	307.8	14	7164797	7166500	1	1	39.1%	36.1%	1704	0.95 / 0.88 = 1.08	ortholog_one2one: LOC796115	2
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 5

syntenyRegion: Danio_rerio.glob07.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 27051174:32227970 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=1.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.19
AlnScore=765 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	281.4	11	27051174	27104270	-1	9	35.2%	35%	1374	0.84 / 0.87 = 0.97	noComparaHits: Q6DGH4_DANRE	9
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000362640	PHKA1	q3	q3	1621.1	11	31129087	31174477	-1	27	84.8%	69.3%	3504	0.29 / 0.33 = 0.88	between_species_paralog: LOC556199	2
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6

syntenyRegion: Danio_rerio.glob37.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 41171046:41495407 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=0.03 log_scoreRatio_sum=-3.5 focal_scoreRatio_sum=0.01
AlnScore=692 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q1	+/+	ENSP00000362621	RBM32B	q1	q1	257.4	8	41236516	41237333	-1	3	80.5%	69.7%	543	0.01 / 0.3 = 0.03	between_species_paralog: zgc:55855	1
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7

syntenyRegion: Danio_rerio.glob40.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 9788741:10159355 -f 28e4 some_geneID_to_be_selected
scoreRatio_sum=0.97 log_scoreRatio_sum=-0.02 focal_scoreRatio_sum=0.49
AlnScore=669 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	q1	+/+	ENSP00000362603	CHIC1	q1	q1	251	1	10150483	10159355	1	5	65.4%	72.7%	477	0.32 / 0.33 = 0.97	between_species_paralog: chic2	2
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8

syntenyRegion: Danio_rerio.glob11.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 17815416:22308960 -f 34e5 some_geneID_to_be_selected
scoreRatio_sum=0.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.11
AlnScore=655 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000362640	PHKA1	q1	q1	1591.3	21	19825622	19872919	-1	28	88.9%	62.5%	3771	0.29 / 0.34 = 0.85	ortholog_one2many: LOC562402	3
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9

syntenyRegion: Danio_rerio.glob43.7.minQN1.fac2.05.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 67428171:68002996 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.04
AlnScore=639 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q1	+/+	ENSP00000218432	PIN4	q1	q1	201.4	7	67428171	67432047	1	3	75%	83.3%	363	0.21 / 0.36 = 0.58	ortholog_one2many: zgc:110008	1
p6	---	gape	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10

syntenyRegion: Danio_rerio.glob09.14.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 21091270:26261216 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=0.47 log_scoreRatio_sum=-0.75 focal_scoreRatio_sum=0.04
AlnScore=543 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q1	+/+	ENSP00000218432	PIN4	q1	q1	171	14	25361270	25363612	1	2	59%	91.5%	276	0.21 / 0.45 = 0.47	ortholog_one2many: PIN4 (2 of 2)	2
p6	---	gape	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 11

syntenyRegion: Danio_rerio.glob02.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 11243216:14865915 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=2.55 log_scoreRatio_sum=0.47 focal_scoreRatio_sum=0.22
AlnScore=520 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	922.3	5	13462690	13469302	1	3	73.7%	56.4%	2844	0.84 / 0.59 = 1.42	ortholog_one2one: A2BGR3_DANRE	1
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	q2	+/+	ENSP00000362567	KIAA2022	q2	q2	426.2	5	12668184	12671447	1	4	52.7%	38.3%	2316	0.95 / 0.84 = 1.13	noComparaHits:	1
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 12

syntenyRegion: Danio_rerio.glob34.Zv7_NA817.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA817 -i 4519:5448 -f 70e1 some_geneID_to_be_selected
scoreRatio_sum=0.84 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=0.12
AlnScore=497 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	q1	+/+	ENSP00000362585	ZCCHC13	q1	q1	170	Zv7_NA817	4519	5448	1	2	80.7%	49.4%	444	0.42 / 0.5 = 0.84	ortholog_many2many: LOC570180	1
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13

syntenyRegion: Danio_rerio.glob13.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 22267192:26132700 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0.01
AlnScore=470 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q1	+/+	ENSP00000362621	RBM32B	q1	q1	174.9	19	25983508	25983939	1	2	52%	73.2%	363	0.01 / 0.52 = 0.02	between_species_paralog: pabpc1b	2
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 14

syntenyRegion: Danio_rerio.glob38.23.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 26296300:27700770 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.01
AlnScore=467 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000349197	RPS26L1	q1	q1	104	23	27032281	27032457	-1	1	51.3%	91.7%	177	0.05 / 0.53 = 0.09	ortholog_many2many: rps26	2
p2	---	gape	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 15

syntenyRegion: Danio_rerio.glob32.16.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 47822640:48367016 -f 41e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0.01
AlnScore=453 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p14	q2	+/+	ENSP00000362621	RBM32B	q2	q2	172.4	16	48363311	48363703	-1	2	52%	78.4%	327	0.01 / 0.53 = 0.02	between_species_paralog: pabpc1a	3
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 16

syntenyRegion: Danio_rerio.glob04.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 29259517:34636502 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.15 log_scoreRatio_sum=-1.89 focal_scoreRatio_sum=0.03
AlnScore=403 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	q1	+/+	ENSP00000362587	BMP2KL	q1	q1	305.3	5	29259517	29260659	-1	1	100%	50%	1143	0.09 / 0.59 = 0.15	ortholog_one2one: BMP2KL	1
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17

syntenyRegion: Danio_rerio.glob17.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 297949:464916 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.09
AlnScore=397 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	354.8	20	297949	464916	1	5	52.7%	53%	996	0.42 / 0.6 = 0.7	between_species_paralog: si:ch211-241j12.1	1
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 18

syntenyRegion: Danio_rerio.glob16.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 30962946:35789353 -f 36e5 some_geneID_to_be_selected
scoreRatio_sum=1.23 log_scoreRatio_sum=-1.12 focal_scoreRatio_sum=0.47
AlnScore=376 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000362640	PHKA1	q1	q1	558.2	7	35287672	35408180	1	15	46.8%	42.7%	1932	0.29 / 0.77 = 0.38	noComparaHits:	4
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q2	+/+	ENSP00000362616	NAP1L2	q3,q4	q2	151.4	7	31802393	31803579	1	3	25.4%	59.2%	351	0.7 / 0.82 = 0.85	between_species_paralog: zgc:101613	3
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gapq	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gapq	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gapq	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gape	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-

region 19

syntenyRegion: Danio_rerio.glob15.11.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 417352:2772301 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.09
AlnScore=327 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	q1	+/+	ENSP00000362585	ZCCHC13	q1	q1	112.1	11	1840048	1840251	-1	1	41%	69.6%	204	0.42 / 0.67 = 0.63	ortholog_many2many: ENSDARG00000070922	2
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20

syntenyRegion: Danio_rerio.glob36.Zv7_NA1092.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1092 -i 19972:91051 -f 53e3 some_geneID_to_be_selected
scoreRatio_sum=0.62 log_scoreRatio_sum=-0.47 focal_scoreRatio_sum=0.09
AlnScore=319 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	q1	+/+	ENSP00000362585	ZCCHC13	q1	q1	109.3	Zv7_NA1092	21167	21379	1	1	42.8%	66.7%	213	0.42 / 0.68 = 0.62	ortholog_many2many: zff9	3
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21

syntenyRegion: Danio_rerio.glob30.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 413347:2264566 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=295 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p14	q2	+/+	ENSP00000362621	RBM32B	q2	q2	113.8	17	1189254	1189466	1	1	35.5%	80.6%	213	0.01 / 0.69 = 0.01	between_species_paralog: pabpc4	4
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 22

syntenyRegion: Danio_rerio.glob27.Zv7_NA3324.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3324 -i 98:7702 -f 57e2 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.07
AlnScore=289 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	258	Zv7_NA3324	98	7702	1	3	32.1%	61.5%	660	0.42 / 0.71 = 0.59	noComparaHits:	2
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23

syntenyRegion: Danio_rerio.glob08.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 25956944:30953693 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=0.15
AlnScore=284 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	320.1	12	26508836	26525059	-1	9	35.8%	36.6%	1335	0.84 / 0.85 = 0.99	noComparaHits: ENSDARG00000005236	4
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q2	+/+	ENSP00000276033	SLC16A2	q2	q2	164.1	12	27015685	27026167	1	3	67.9%	27.8%	1269	0.42 / 0.81 = 0.52	between_species_paralog: LOC565514	6
p25	---	gapq	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gapq	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gapq	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-

region 24

syntenyRegion: Danio_rerio.glob39.5.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 1565585:1602109 -f 27e3 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=240 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	214.8	5	1565585	1602109	1	4	35.6%	49.8%	663	0.42 / 0.75 = 0.56	between_species_paralog: SLC16A10 (2 of 2)	3
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25

syntenyRegion: Danio_rerio.glob06.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 19316543:20478391 -f 87e4 some_geneID_to_be_selected
scoreRatio_sum=0.66 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.07
AlnScore=237 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gaps	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gaps	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	q1	+/+	ENSP00000328059	RNF12	q1	q1	260.1	24	20092290	20095366	-1	3	62.5%	42%	1194	0.5 / 0.76 = 0.66	noComparaHits:	2
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26

syntenyRegion: Danio_rerio.glob12.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 4 -i 2467076:7855002 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.46
AlnScore=229 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q1	+/+	ENSP00000362616	NAP1L2	q1	q1	194.1	4	2477292	2479313	1	4	35.2%	56.1%	501	0.7 / 0.77 = 0.91	ortholog_one2many: nap1l1	1
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27

syntenyRegion: Danio_rerio.glob25.7.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 21674638:26936010 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=1.45 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=0.14
AlnScore=224 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	/+	ENSP00000334675	NP_001009954.1	q1	q1	258.7	7	26903611	26936010	-1	7	31.3%	35.8%	1209	0.84 / 0.88 = 0.95	noComparaHits: ENSDARG00000017244	noData
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q2	+/+	ENSP00000276033	SLC16A2	q2	q2	139.7	7	21692721	21699288	-1	3	56.9%	27.7%	1023	0.42 / 0.84 = 0.5	noComparaHits:	(8)
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 28

syntenyRegion: Danio_rerio.glob18.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 24915419:28517335 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=1.44 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=0.14
AlnScore=223 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	/+	ENSP00000334675	NP_001009954.1	q1	q1	209	8	28502521	28517335	-1	5	16.9%	48.8%	633	0.84 / 0.9 = 0.93	noComparaHits: A2RUZ9_DANRE	noData
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q2	+/+	ENSP00000276033	SLC16A2	q2	q2	156.6	8	25336662	25535369	-1	3	68.5%	24.6%	1275	0.42 / 0.82 = 0.51	between_species_paralog: slc16a1	9
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29

syntenyRegion: Danio_rerio.glob44.12.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 17710389:18490055 -f 58e4 some_geneID_to_be_selected
scoreRatio_sum=0.53 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.07
AlnScore=200 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	179	12	18414117	18490055	1	4	70.8%	28.1%	1416	0.42 / 0.79 = 0.53	between_species_paralog: LOC557884	4
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 30

syntenyRegion: Danio_rerio.glob31.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 19318876:20710334 -f 10e5 some_geneID_to_be_selected
scoreRatio_sum=0.53 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.07
AlnScore=197 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	176	17	19318876	19329865	-1	5	56.8%	29.6%	1089	0.42 / 0.8 = 0.53	between_species_paralog: slc16a9a	5
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 31

syntenyRegion: Danio_rerio.glob33.7.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 20775509:21505185 -f 55e4 some_geneID_to_be_selected
scoreRatio_sum=1.42 log_scoreRatio_sum=-0.77 focal_scoreRatio_sum=0.14
AlnScore=184 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	/+	ENSP00000334675	NP_001009954.1	q1	q1	198.2	7	20775509	20784270	1	6	20.7%	38.4%	789	0.84 / 0.91 = 0.92	noComparaHits: ENSDARG00000055627 ; A0PJQ7_DANRE	noData
p7	---	gapq	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gapq	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gapq	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q2	/+	ENSP00000276033	SLC16A2	q2	q2	139.7	7	21498618	21505185	-1	3	56.9%	27.7%	1023	0.42 / 0.84 = 0.5	between_species_paralog: LOC793210	(8)
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32

syntenyRegion: Danio_rerio.glob47.21.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 41200423:44730509 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=0.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=0.86
AlnScore=183 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q1	+/+	ENSP00000362613	CDX4	q1	q1	102	21	43615612	43626238	1	2	63.4%	34.8%	510	0.7 / 0.81 = 0.86	between_species_paralog: CDX1	2
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 33

syntenyRegion: Danio_rerio.glob45.23.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 6035475:7450791 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=0.51 log_scoreRatio_sum=-0.66 focal_scoreRatio_sum=0.06
AlnScore=174 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	155.3	23	7441321	7450791	1	3	63.9%	25.7%	1191	0.42 / 0.82 = 0.51	between_species_paralog: zgc:123207	10
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 34

syntenyRegion: Danio_rerio.glob42.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 33296081:33933814 -f 48e4 some_geneID_to_be_selected
scoreRatio_sum=0.51 log_scoreRatio_sum=-0.66 focal_scoreRatio_sum=0.06
AlnScore=173 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	154.9	3	33896110	33933814	1	3	55.3%	28.3%	1026	0.42 / 0.82 = 0.51	between_species_paralog: LOC561627	noData
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 35

syntenyRegion: Danio_rerio.glob29.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 25 -i 18968435:20662289 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=0.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=0.43
AlnScore=166 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p16	q2	+/+	ENSP00000362616	NAP1L2	q1,q2	q2	149.4	25	19862063	19862988	-1	3	24.3%	60%	336	0.7 / 0.82 = 0.85	noComparaHits:	4
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 36

syntenyRegion: Danio_rerio.glob22.18.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 14509642:19837872 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.51 log_scoreRatio_sum=-0.66 focal_scoreRatio_sum=0.06
AlnScore=162 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	144.8	18	19710175	19837872	-1	4	57.6%	25.7%	1104	0.42 / 0.83 = 0.51	between_species_paralog: LOC559426	noData
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 37

syntenyRegion: Danio_rerio.glob28.16.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 15879376:20948851 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=0.99 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.08
AlnScore=144 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	327.4	16	19672360	19686210	1	9	34.3%	38.3%	1398	0.84 / 0.85 = 0.99	noComparaHits:	3
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 38

syntenyRegion: Danio_rerio.glob21.5.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 58959649:61122870 -f 16e5 some_geneID_to_be_selected
scoreRatio_sum=0.49 log_scoreRatio_sum=-0.7 focal_scoreRatio_sum=0.06
AlnScore=139 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gaps	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gaps	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gaps	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	q1	+/+	ENSP00000276033	SLC16A2	q1	q1	124.4	5	59414938	59423228	1	3	57.7%	22.9%	1056	0.42 / 0.86 = 0.49	between_species_paralog: zgc:114041	noData
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 39

syntenyRegion: Danio_rerio.glob60.Zv7_NA1282.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1282 -i 2848:56196 -f 40e3 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.08
AlnScore=116 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	264.7	Zv7_NA1282	2848	27641	-1	7	31.4%	36.5%	1299	0.84 / 0.88 = 0.95	noComparaHits: rad54l	noData
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40

syntenyRegion: Danio_rerio.glob26.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 52139145:54664270 -f 19e5 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.08
AlnScore=115 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	262.1	6	52697391	52711108	-1	7	26.6%	40.1%	1059	0.84 / 0.88 = 0.95	noComparaHits:	noData
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 41

syntenyRegion: Danio_rerio.glob23.20.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 25234486:30344887 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.08
AlnScore=114 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	260.2	20	25234486	25324430	1	8	20.8%	44.4%	810	0.84 / 0.88 = 0.95	noComparaHits: dll4 ; chac1 ; si:ch211-244p18.3	noData
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 42

syntenyRegion: Danio_rerio.glob10.23.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 32891628:37801962 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=0.96 log_scoreRatio_sum=-0.03 focal_scoreRatio_sum=0.06
AlnScore=108 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000362781	NP_001013649.1	q1	q1	141.3	23	37503993	37505159	1	1	52.3%	35%	1167	0.85 / 0.89 = 0.96	between_species_paralog: NHS	2
p4	---	gape	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000334675	NP_001009954.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43

syntenyRegion: Danio_rerio.glob24.22.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 7676924:13013635 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.08
AlnScore=82 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000362613 (contained in p17)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000349197	RPS26L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000327693	RGAG4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000362781	NP_001013649.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000324208	TPT1L_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000218432	PIN4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000334675	NP_001009954.1	q1	q1	186	22	8227653	8238938	1	4	21%	40.6%	813	0.84 / 0.91 = 0.92	noComparaHits: si:dkey-42i9.10	noData
p7	---	gape	ENSP00000362744	RPS4X	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000362721	CITED1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000362674	HDAC8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000362640	PHKA1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000348411	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000334501	CXorf50	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000362624	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000362621	RBM32B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000362617	NAP1L6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000362616	NAP1L2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000362613	CDX4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000362603	CHIC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000362594	FXYD8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000362593	Q6ZNG4_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000362589	USMG5P1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p22	---	gape	ENSP00000362587	BMP2KL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p23	---	gape	ENSP00000362585	ZCCHC13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p24	---	gape	ENSP00000276033	SLC16A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p25	---	gape	ENSP00000346698	Q9H3B5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p26	---	gape	ENSP00000328059	RNF12	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p27	---	gape	ENSP00000362567	KIAA2022	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for C2_CDX4_ENSG00000131264_15e5.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	2934	10.34	2.53	0.99	Danio_rerio	7
2	1192	2.53	0.47	1.92	Danio_rerio	14	37387100	37389654	3	95.4%	51.2%	-1	254.3	ortholog_one2one: cdx4
3	940	0.87	-1.67	0.08	Danio_rerio	6
4	789	2.7	-0.35	0.27	Danio_rerio	14
5	765	1.85	-0.15	0.19	Danio_rerio	11
6	692	0.03	-3.5	0.01	Danio_rerio	8
7	669	0.97	-0.02	0.49	Danio_rerio	1
8	655	0.85	-0.15	0.11	Danio_rerio	21
9	639	0.58	-0.53	0.04	Danio_rerio	7
10	543	0.47	-0.75	0.04	Danio_rerio	14
11	520	2.55	0.47	0.22	Danio_rerio	5
12	497	0.84	-0.16	0.12	Danio_rerio	Zv7_NA817
13	470	0.02	-3.9	0.01	Danio_rerio	19
14	467	0.09	-2.4	0.01	Danio_rerio	23
15	453	0.02	-3.9	0.01	Danio_rerio	16
16	403	0.15	-1.89	0.03	Danio_rerio	5
17	397	0.7	-0.35	0.09	Danio_rerio	20
18	376	1.23	-1.12	0.47	Danio_rerio	7
19	327	0.63	-0.45	0.09	Danio_rerio	11
20	319	0.62	-0.47	0.09	Danio_rerio	Zv7_NA1092
21	295	0.01	-4.6	0	Danio_rerio	17
22	289	0.59	-0.52	0.07	Danio_rerio	Zv7_NA3324
23	284	1.51	-0.65	0.15	Danio_rerio	12
24	240	0.56	-0.57	0.07	Danio_rerio	5
25	237	0.66	-0.41	0.07	Danio_rerio	24
26	229	0.91	-0.08	0.46	Danio_rerio	4
27	224	1.45	-0.73	0.14	Danio_rerio	7
28	223	1.44	-0.74	0.14	Danio_rerio	8
29	200	0.53	-0.62	0.07	Danio_rerio	12
30	197	0.53	-0.62	0.07	Danio_rerio	17
31	184	1.42	-0.77	0.14	Danio_rerio	7
32	183	0.86	-0.14	0.86	Danio_rerio	21	43615612	43626238	2	63.4%	34.8%	1	102	between_species_paralog: CDX1
33	174	0.51	-0.66	0.06	Danio_rerio	23
34	173	0.51	-0.66	0.06	Danio_rerio	3
35	166	0.85	-0.15	0.43	Danio_rerio	25
36	162	0.51	-0.66	0.06	Danio_rerio	18
37	144	0.99	0	0.08	Danio_rerio	16
38	139	0.49	-0.7	0.06	Danio_rerio	5
39	116	0.95	-0.04	0.08	Danio_rerio	Zv7_NA1282
40	115	0.95	-0.04	0.08	Danio_rerio	6
41	114	0.95	-0.04	0.08	Danio_rerio	20
42	108	0.96	-0.03	0.06	Danio_rerio	23
43	82	0.92	-0.07	0.08	Danio_rerio	22