# using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ......chromosome 5: 477 37031000 39014815 39015396 8 8 477 0 (marked for saving) chromosome 22: 652 675037 1146859 2659945 11 12 709 76.2 (marked for saving) chromosome 1: 1113 178383555 179435642 180368243 13 19 1472 46.9 (marked for saving) chromosome 13: 794 9415682 9813090 11379327 13 13 794 78.8 (marked for saving) 588 7489844 9141618 9142484 10 10 588 0 (marked for saving) 494 1742111 3062212 3062412 8 8 494 0 (marked for saving) chromosome 6: 727 31735402 33073498 33718676 11 40 2553 32.4 (marked for saving) 613 22612489 22830306 24466095 9 10 666 82.3 (marked for saving) chromosome 4: 921 67143331 67334194 67334526 12 12 921 0 (marked for saving) 732 81755875 81776467 81776901 12 12 732 0 (marked for saving) 708 85458646 87441617 87442153 11 11 708 0 (marked for saving) 689 83751202 84411112 84421219 11 21 1302 0.5 (marked for saving) 223 10708336 12187239 12204779 4 7 381 0.8 (marked for saving) chromosome Un_random: 1293 27289324 27778776 29265129 12 26 2385 74.8 (marked for saving) 1152 367300 376717 2035555 12 17 1425 83.5 (marked for saving) 1066 18404659 20045126 20048409 12 13 1173 0.1 (marked for saving) 929 9083206 11038119 11040291 12 13 1065 0.1 (marked for saving) 925 13242619 13865410 13865619 11 11 925 0 (marked for saving) 830 3285838 4242278 4245456 12 13 944 0.1 (marked for saving) chromosome 27: 1748 1665501 3253607 3641424 12 102 8927 19.5 (marked for saving) chromosome 7: 1644 17278817 17361489 17447372 12 91 7591 4.3 (marked for saving) 853 4383644 5167375 5167905 12 12 853 0 (marked for saving) 778 28138955 30116370 30117035 12 12 778 0 (marked for saving) 225 23532827 23876572 23876937 4 4 225 0 (marked for saving) chromosome 2: 3157 30872971 32327815 32855815 14 130 13577 26.5 (marked for saving) 881 119125 185838 186395 12 12 881 0 (marked for saving) 362 7842331 8488073 8488443 7 12 539 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 2 3157 30872971 32327815 32855815 14 130 13577 26.5 (saved) 27 1748 1665501 3253607 3641424 12 102 8927 19.5 (saved) 7 1644 17278817 17361489 17447372 12 91 7591 4.3 (saved) Un_random 1293 27289324 27778776 29265129 12 26 2385 74.8 (saved) Un_random 1152 367300 376717 2035555 12 17 1425 83.5 (saved) 1 1113 178383555 179435642 180368243 13 19 1472 46.9 (saved) Un_random 1066 18404659 20045126 20048409 12 13 1173 0.1 (saved) Un_random 929 9083206 11038119 11040291 12 13 1065 0.1 (saved) Un_random 925 13242619 13865410 13865619 11 11 925 0 (saved) 4 921 67143331 67334194 67334526 12 12 921 0 (saved) 2 881 119125 185838 186395 12 12 881 0 (saved) 7 853 4383644 5167375 5167905 12 12 853 0 (saved) Un_random 830 3285838 4242278 4245456 12 13 944 0.1 (saved) 13 794 9415682 9813090 11379327 13 13 794 78.8 (saved) 7 778 28138955 30116370 30117035 12 12 778 0 (saved) 4 732 81755875 81776467 81776901 12 12 732 0 (saved) 6 727 31735402 33073498 33718676 11 40 2553 32.4 (saved) 4 708 85458646 87441617 87442153 11 11 708 0 (saved) 4 689 83751202 84411112 84421219 11 21 1302 0.5 (saved) 22 652 675037 1146859 2659945 11 12 709 76.2 (saved) 6 613 22612489 22830306 24466095 9 10 666 82.3 13 588 7489844 9141618 9142484 10 10 588 0 13 494 1742111 3062212 3062412 8 8 494 0 5 477 37031000 39014815 39015396 8 8 477 0 2 362 7842331 8488073 8488443 7 12 539 0 7 225 23532827 23876572 23876937 4 4 225 0 4 223 10708336 12187239 12204779 4 7 381 0.8 global files summary: Gallus_gallus.glob01.2.minQN4.fac2.01.blastresult Gallus_gallus.glob02.27.minQN4.fac2.01.blastresult Gallus_gallus.glob03.7.minQN4.fac2.01.blastresult Gallus_gallus.glob04.Un_random.minQN4.fac2.01.blastresult Gallus_gallus.glob05.Un_random.minQN4.fac2.02.blastresult Gallus_gallus.glob06.1.minQN4.fac2.01.blastresult Gallus_gallus.glob07.Un_random.minQN4.fac2.03.blastresult Gallus_gallus.glob08.Un_random.minQN4.fac2.04.blastresult Gallus_gallus.glob09.Un_random.minQN4.fac2.05.blastresult Gallus_gallus.glob10.4.minQN4.fac2.01.blastresult Gallus_gallus.glob11.2.minQN4.fac2.02.blastresult Gallus_gallus.glob12.7.minQN4.fac2.02.blastresult Gallus_gallus.glob13.Un_random.minQN4.fac2.06.blastresult Gallus_gallus.glob14.13.minQN4.fac2.01.blastresult Gallus_gallus.glob15.7.minQN4.fac2.03.blastresult Gallus_gallus.glob16.4.minQN4.fac2.02.blastresult Gallus_gallus.glob17.6.minQN4.fac2.01.blastresult Gallus_gallus.glob18.4.minQN4.fac2.03.blastresult Gallus_gallus.glob19.4.minQN4.fac2.04.blastresult Gallus_gallus.glob20.22.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ....chromosome 5: 404 38443128 39015091 39015396 7 7 404 0 (marked for saving) chromosome 22: 530 1000559 1146793 1147236 9 9 530 0 (marked for saving) chromosome 1: 876 179794527 180355088 180368165 10 14 1097 2.2 (marked for saving) chromosome 13: 603 9484624 9813105 9813611 10 10 603 0 (marked for saving) 493 2872700 3062212 3062412 8 8 493 0 (marked for saving) 470 8932432 9141858 9142322 8 8 470 0 (marked for saving) 223 12740256 13314151 13314665 4 5 256 0 (marked for saving) chromosome 6: 576 32889709 33073477 33087610 9 26 1626 2.4 (marked for saving) 537 24043133 24465568 24466098 8 8 537 0 (marked for saving) 520 33145673 33718446 33718676 8 8 520 0 (marked for saving) chromosome 4: 780 67283105 67334206 67334532 10 10 780 0 (marked for saving) 610 81234581 81776497 81776829 10 10 610 0 (marked for saving) 581 84214117 84411196 84420979 9 18 1116 1.7 (marked for saving) 581 87417981 87441623 87441844 9 9 581 0 (marked for saving) 226 11793561 12187266 12204779 4 7 384 3 (marked for saving) chromosome Un_random: 1089 27623981 27778821 27810035 10 21 2023 5.4 (marked for saving) 1026 1 376678 377022 10 10 1026 0 (marked for saving) 860 20042845 20045135 20048409 10 11 953 0.5 (marked for saving) 823 13321633 13865410 13865646 9 9 823 0 (marked for saving) 690 10652705 11038149 11038724 10 10 690 0.1 (marked for saving) 687 4029277 4242275 4245456 10 11 798 0.5 (marked for saving) 330 1863649 2035328 2035570 6 6 330 0 (marked for saving) chromosome 27: 2044 3066995 3253442 3641490 10 88 8923 67.4 (marked for saving) chromosome 7: 1473 16950963 17361456 17445827 10 75 6400 14.6 (marked for saving) 745 5001183 5167375 5167905 10 10 745 0 (marked for saving) 633 29542091 30116460 30116966 10 10 633 0 (marked for saving) chromosome 2: 1611 32047269 32513553 32621837 10 97 9181 18.8 (marked for saving) 772 1 185859 186278 10 10 772 0 (marked for saving) 398 8484201 8488070 8488518 8 14 612 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 27 2044 3066995 3253442 3641490 10 88 8923 67.4 (saved) 2 1611 32047269 32513553 32621837 10 97 9181 18.8 (saved) 7 1473 16950963 17361456 17445827 10 75 6400 14.6 (saved) Un_random 1089 27623981 27778821 27810035 10 21 2023 5.4 (saved) Un_random 1026 1 376678 377022 10 10 1026 0 (saved) 1 876 179794527 180355088 180368165 10 14 1097 2.2 (saved) Un_random 860 20042845 20045135 20048409 10 11 953 0.5 (saved) Un_random 823 13321633 13865410 13865646 9 9 823 0 (saved) 4 780 67283105 67334206 67334532 10 10 780 0 (saved) 2 772 1 185859 186278 10 10 772 0 (saved) 7 745 5001183 5167375 5167905 10 10 745 0 (saved) Un_random 690 10652705 11038149 11038724 10 10 690 0.1 (saved) Un_random 687 4029277 4242275 4245456 10 11 798 0.5 (saved) 7 633 29542091 30116460 30116966 10 10 633 0 (saved) 4 610 81234581 81776497 81776829 10 10 610 0 (saved) 13 603 9484624 9813105 9813611 10 10 603 0 (saved) 4 581 84214117 84411196 84420979 9 18 1116 1.7 (saved) 4 581 87417981 87441623 87441844 9 9 581 0 (saved) 6 576 32889709 33073477 33087610 9 26 1626 2.4 (saved) 6 537 24043133 24465568 24466098 8 8 537 0 (saved) 22 530 1000559 1146793 1147236 9 9 530 0 6 520 33145673 33718446 33718676 8 8 520 0 13 493 2872700 3062212 3062412 8 8 493 0 13 470 8932432 9141858 9142322 8 8 470 0 5 404 38443128 39015091 39015396 7 7 404 0 2 398 8484201 8488070 8488518 8 14 612 0 Un_random 330 1863649 2035328 2035570 6 6 330 0 4 226 11793561 12187266 12204779 4 7 384 3 13 223 12740256 13314151 13314665 4 5 256 0 global files summary: Gallus_gallus.glob01.27.minQN4.fac2.01.blastresult Gallus_gallus.glob02.2.minQN4.fac2.01.blastresult Gallus_gallus.glob03.7.minQN4.fac2.01.blastresult Gallus_gallus.glob04.Un_random.minQN4.fac2.01.blastresult Gallus_gallus.glob05.Un_random.minQN4.fac2.02.blastresult Gallus_gallus.glob06.1.minQN4.fac2.01.blastresult Gallus_gallus.glob07.Un_random.minQN4.fac2.03.blastresult Gallus_gallus.glob08.Un_random.minQN4.fac2.04.blastresult Gallus_gallus.glob09.4.minQN4.fac2.01.blastresult Gallus_gallus.glob10.2.minQN4.fac2.02.blastresult Gallus_gallus.glob11.7.minQN4.fac2.02.blastresult Gallus_gallus.glob12.Un_random.minQN4.fac2.05.blastresult Gallus_gallus.glob13.Un_random.minQN4.fac2.06.blastresult Gallus_gallus.glob14.7.minQN4.fac2.03.blastresult Gallus_gallus.glob15.4.minQN4.fac2.02.blastresult Gallus_gallus.glob16.13.minQN4.fac2.01.blastresult Gallus_gallus.glob17.4.minQN4.fac2.03.blastresult Gallus_gallus.glob18.4.minQN4.fac2.04.blastresult Gallus_gallus.glob19.6.minQN4.fac2.01.blastresult Gallus_gallus.glob20.6.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ......chromosome 22: 463 1020951 1146838 1147137 8 8 463 0 (marked for saving) chromosome 5: 339 38160452 39015088 39015420 6 6 339 0 (marked for saving) chromosome 1: 724 179459675 180355088 180368159 9 12 887 1.1 (marked for saving) chromosome 13: 545 8739052 9142035 9813485 9 18 1046 57.5 (marked for saving) 306 2642522 3062212 3062412 5 5 306 0 (marked for saving) chromosome 6: 484 32557714 33073495 33718643 8 25 1498 55.3 (marked for saving) 414 23847552 24465598 24466074 7 7 414 0 (marked for saving) chromosome 4: 642 66869709 67334182 67334505 9 9 642 0 (marked for saving) 526 81676401 81776482 81776874 9 9 526 0 (marked for saving) 473 83619123 84411211 84421159 8 16 918 0.8 (marked for saving) 370 86279427 87441641 87441844 6 6 370 0 (marked for saving) chromosome 27: 1097 2475243 3518829 3641295 9 76 6487 10.4 (marked for saving) chromosome Un_random: 1041 27746505 27778788 27807228 9 18 1734 2.4 (marked for saving) 990 19106351 20045123 20048409 9 10 1154 0.2 (marked for saving) 920 11037929 11038119 11040351 9 10 1070 0.1 (marked for saving) 826 274199 376759 377022 9 9 826 0 (marked for saving) 769 3185365 4242275 4245456 9 10 914 0.2 (marked for saving) 656 13464873 13865410 13865634 8 8 656 0 (marked for saving) 269 1417663 2035328 2035555 5 5 269 0 (marked for saving) chromosome 7: 1595 16754369 16921183 17445827 11 74 6400 44.9 (marked for saving) 589 4327949 5167426 5167893 9 9 589 0 (marked for saving) 517 28953263 30116331 30116972 8 8 517 0 (marked for saving) chromosome 2: 1543 31958653 32118713 32895346 12 96 8474 66.5 (marked for saving) 619 1 185838 186269 9 9 619 0 (marked for saving) 189 7356675 8488073 8488383 4 7 294 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 7 1595 16754369 16921183 17445827 11 74 6400 44.9 (saved) 2 1543 31958653 32118713 32895346 12 96 8474 66.5 (saved) 27 1097 2475243 3518829 3641295 9 76 6487 10.4 (saved) Un_random 1041 27746505 27778788 27807228 9 18 1734 2.4 (saved) Un_random 990 19106351 20045123 20048409 9 10 1154 0.2 (saved) Un_random 920 11037929 11038119 11040351 9 10 1070 0.1 (saved) Un_random 826 274199 376759 377022 9 9 826 0 (saved) Un_random 769 3185365 4242275 4245456 9 10 914 0.2 (saved) 1 724 179459675 180355088 180368159 9 12 887 1.1 (saved) Un_random 656 13464873 13865410 13865634 8 8 656 0 (saved) 4 642 66869709 67334182 67334505 9 9 642 0 (saved) 2 619 1 185838 186269 9 9 619 0 (saved) 7 589 4327949 5167426 5167893 9 9 589 0 (saved) 13 545 8739052 9142035 9813485 9 18 1046 57.5 (saved) 4 526 81676401 81776482 81776874 9 9 526 0 (saved) 7 517 28953263 30116331 30116972 8 8 517 0 (saved) 6 484 32557714 33073495 33718643 8 25 1498 55.3 (saved) 4 473 83619123 84411211 84421159 8 16 918 0.8 (saved) 22 463 1020951 1146838 1147137 8 8 463 0 (saved) 6 414 23847552 24465598 24466074 7 7 414 0 (saved) 4 370 86279427 87441641 87441844 6 6 370 0 5 339 38160452 39015088 39015420 6 6 339 0 13 306 2642522 3062212 3062412 5 5 306 0 Un_random 269 1417663 2035328 2035555 5 5 269 0 2 189 7356675 8488073 8488383 4 7 294 0 global files summary: Gallus_gallus.glob01.7.minQN4.fac2.01.blastresult Gallus_gallus.glob02.2.minQN4.fac2.01.blastresult Gallus_gallus.glob03.27.minQN4.fac2.01.blastresult Gallus_gallus.glob04.Un_random.minQN4.fac2.01.blastresult Gallus_gallus.glob05.Un_random.minQN4.fac2.02.blastresult Gallus_gallus.glob06.Un_random.minQN4.fac2.03.blastresult Gallus_gallus.glob07.Un_random.minQN4.fac2.04.blastresult Gallus_gallus.glob08.Un_random.minQN4.fac2.05.blastresult Gallus_gallus.glob09.1.minQN4.fac2.01.blastresult Gallus_gallus.glob10.Un_random.minQN4.fac2.06.blastresult Gallus_gallus.glob11.4.minQN4.fac2.01.blastresult Gallus_gallus.glob12.2.minQN4.fac2.02.blastresult Gallus_gallus.glob13.7.minQN4.fac2.02.blastresult Gallus_gallus.glob14.13.minQN4.fac2.01.blastresult Gallus_gallus.glob15.4.minQN4.fac2.02.blastresult Gallus_gallus.glob16.7.minQN4.fac2.03.blastresult Gallus_gallus.glob17.6.minQN4.fac2.01.blastresult Gallus_gallus.glob18.4.minQN4.fac2.03.blastresult Gallus_gallus.glob19.22.minQN4.fac2.01.blastresult Gallus_gallus.glob20.6.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..chromosome 22: 524 796478 1146766 1147245 9 9 524 0 (marked for saving) chromosome 5: 518 38201953 39015061 39015801 9 9 518 0 (marked for saving) chromosome 1: 814 179556123 180355088 180368171 10 11 867 1.6 (marked for saving) chromosome 13: 620 8998487 9142038 9813596 10 18 1088 82.3 (marked for saving) 410 2430440 3062212 3062400 7 7 410 0 (marked for saving) chromosome 6: 550 32905151 33073477 33718706 9 29 1732 79.1 (marked for saving) 448 24396452 24465598 24466092 7 7 448 0 (marked for saving) chromosome 4: 717 67324789 67334266 67334529 10 10 717 0 (marked for saving) 603 81178435 81776515 81777000 10 10 603 0 (marked for saving) 556 84183184 84411214 84421123 9 16 966 1.2 (marked for saving) 494 86629384 87441632 87442246 8 8 494 0 (marked for saving) chromosome Un_random: 1006 27617599 27778788 27807228 10 20 1748 3.4 (marked for saving) 891 19235287 20045093 20048409 10 11 999 0.4 (marked for saving) 859 16309 376714 377022 10 10 859 0 (marked for saving) 813 10233271 11038122 11040291 10 11 897 0.2 (marked for saving) 721 3473605 4242278 4245456 10 11 839 0.3 (marked for saving) 659 13115710 13865410 13865634 9 9 659 0 (marked for saving) chromosome 27: 1332 2826250 3518838 3641292 10 85 7175 15 (marked for saving) chromosome 7: 2506 17235779 17315309 17512501 12 92 8769 24.1 (marked for saving) 661 5086319 5167375 5167911 10 10 661 0 (marked for saving) 583 29303699 30116379 30116972 9 9 583 0 (marked for saving) chromosome 2: 1636 32032990 32513637 32659744 10 96 8683 17.9 (marked for saving) 700 110080 185847 186284 10 10 700 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 7 2506 17235779 17315309 17512501 12 92 8769 24.1 (saved) 2 1636 32032990 32513637 32659744 10 96 8683 17.9 (saved) 27 1332 2826250 3518838 3641292 10 85 7175 15 (saved) Un_random 1006 27617599 27778788 27807228 10 20 1748 3.4 (saved) Un_random 891 19235287 20045093 20048409 10 11 999 0.4 (saved) Un_random 859 16309 376714 377022 10 10 859 0 (saved) 1 814 179556123 180355088 180368171 10 11 867 1.6 (saved) Un_random 813 10233271 11038122 11040291 10 11 897 0.2 (saved) Un_random 721 3473605 4242278 4245456 10 11 839 0.3 (saved) 4 717 67324789 67334266 67334529 10 10 717 0 (saved) 2 700 110080 185847 186284 10 10 700 0 (saved) 7 661 5086319 5167375 5167911 10 10 661 0 (saved) Un_random 659 13115710 13865410 13865634 9 9 659 0 (saved) 13 620 8998487 9142038 9813596 10 18 1088 82.3 (saved) 4 603 81178435 81776515 81777000 10 10 603 0 (saved) 7 583 29303699 30116379 30116972 9 9 583 0 (saved) 4 556 84183184 84411214 84421123 9 16 966 1.2 (saved) 6 550 32905151 33073477 33718706 9 29 1732 79.1 (saved) 22 524 796478 1146766 1147245 9 9 524 0 (saved) 5 518 38201953 39015061 39015801 9 9 518 0 (saved) 4 494 86629384 87441632 87442246 8 8 494 0 6 448 24396452 24465598 24466092 7 7 448 0 13 410 2430440 3062212 3062400 7 7 410 0 global files summary: Gallus_gallus.glob01.7.minQN4.fac2.01.blastresult Gallus_gallus.glob02.2.minQN4.fac2.01.blastresult Gallus_gallus.glob03.27.minQN4.fac2.01.blastresult Gallus_gallus.glob04.Un_random.minQN4.fac2.01.blastresult Gallus_gallus.glob05.Un_random.minQN4.fac2.02.blastresult Gallus_gallus.glob06.Un_random.minQN4.fac2.03.blastresult Gallus_gallus.glob07.1.minQN4.fac2.01.blastresult Gallus_gallus.glob08.Un_random.minQN4.fac2.04.blastresult Gallus_gallus.glob09.Un_random.minQN4.fac2.05.blastresult Gallus_gallus.glob10.4.minQN4.fac2.01.blastresult Gallus_gallus.glob11.2.minQN4.fac2.02.blastresult Gallus_gallus.glob12.7.minQN4.fac2.02.blastresult Gallus_gallus.glob13.Un_random.minQN4.fac2.06.blastresult Gallus_gallus.glob14.13.minQN4.fac2.01.blastresult Gallus_gallus.glob15.4.minQN4.fac2.02.blastresult Gallus_gallus.glob16.7.minQN4.fac2.03.blastresult Gallus_gallus.glob17.4.minQN4.fac2.03.blastresult Gallus_gallus.glob18.6.minQN4.fac2.01.blastresult Gallus_gallus.glob19.22.minQN4.fac2.01.blastresult Gallus_gallus.glob20.5.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ............chromosome 1099213941481: 222 1 720 890 4 4 222 0 (marked for saving) ..chromosome 1099214175475: 1088 1 213 605 12 12 1088 0 (marked for saving) chromosome 4: 477 27774681 28826657 28827478 8 8 477 0 (marked for saving) chromosome 2: 405 163237685 163654223 163654972 7 7 405 0 (marked for saving) chromosome 15: 546 4962818 6054514 6055083 9 9 546 0 (marked for saving) 174 103716614 105693726 105694203 4 8 305 0 (marked for saving) chromosome 10: 623 54621115 54687381 54810070 10 18 1095 6.1 (marked for saving) chromosome X: 248 40935578 41223810 41224346 4 4 248 0 (marked for saving) chromosome 7: 652 97752813 99481429 99546043 11 18 1063 3.2 (marked for saving) chromosome 8: 691 22259602 23777991 23805933 11 21 1295 1.4 (marked for saving) chromosome 17: 1018 6237774 7468487 7621326 12 26 2039 7.6 (marked for saving) chromosome 6: 746 169173574 169637978 171149524 12 22 1329 76.1 (marked for saving) 512 166205401 167694757 167695383 8 8 512 0 (marked for saving) chromosome 1: 721 704818 2539894 2540691 11 11 721 0 (marked for saving) 510 1 24023 24268 8 8 510 0 (marked for saving) 397 92450152 93424635 93424862 7 7 397 0 (marked for saving) chromosome 13: 690 74494834 74728573 75876744 11 21 1225 57.8 (marked for saving) 677 123037864 125017517 125017834 11 11 677 0 (marked for saving) chromosome 5: 932 75198932 75291831 75292211 12 12 932 0 (marked for saving) 730 2811248 3883003 3883395 12 12 730 0 (marked for saving) 637 7208909 8355369 8355767 10 10 637 0 (marked for saving) chromosome 9: 758 122126069 122726317 124045028 11 31 2016 66.4 (marked for saving) 726 98936597 99144199 100846252 11 29 1790 85.7 (marked for saving) chromosome 11: 1492 51020711 51036974 51154556 12 101 8569 5.9 (marked for saving) chromosome 16: 1782 31224425 32385757 32953200 13 116 10666 28.5 (marked for saving) chromosome 12: 1808 38184790 39720761 39831755 12 105 8979 5.5 (marked for saving) 869 98064454 100048036 100048629 12 12 869 0 (marked for saving) chromosome 3: 4623 98102058 98565502 99558122 16 153 17175 49.9 (marked for saving) 896 187296153 188095024 188095560 12 12 896 0 (marked for saving) 693 190631625 192613578 192613901 11 11 693 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 3 4623 98102058 98565502 99558122 16 153 17175 49.9 (saved) 12 1808 38184790 39720761 39831755 12 105 8979 5.5 (saved) 16 1782 31224425 32385757 32953200 13 116 10666 28.5 (saved) 11 1492 51020711 51036974 51154556 12 101 8569 5.9 (saved) 1099214175475 1088 1 213 605 12 12 1088 0 (saved) 17 1018 6237774 7468487 7621326 12 26 2039 7.6 (saved) 5 932 75198932 75291831 75292211 12 12 932 0 (saved) 3 896 187296153 188095024 188095560 12 12 896 0 (saved) 12 869 98064454 100048036 100048629 12 12 869 0 (saved) 9 758 122126069 122726317 124045028 11 31 2016 66.4 (saved) 6 746 169173574 169637978 171149524 12 22 1329 76.1 (saved) 5 730 2811248 3883003 3883395 12 12 730 0 (saved) 9 726 98936597 99144199 100846252 11 29 1790 85.7 (saved) 1 721 704818 2539894 2540691 11 11 721 0 (saved) 3 693 190631625 192613578 192613901 11 11 693 0 (saved) 8 691 22259602 23777991 23805933 11 21 1295 1.4 (saved) 13 690 74494834 74728573 75876744 11 21 1225 57.8 (saved) 13 677 123037864 125017517 125017834 11 11 677 0 (saved) 7 652 97752813 99481429 99546043 11 18 1063 3.2 (saved) 5 637 7208909 8355369 8355767 10 10 637 0 (saved) 10 623 54621115 54687381 54810070 10 18 1095 6.1 15 546 4962818 6054514 6055083 9 9 546 0 6 512 166205401 167694757 167695383 8 8 512 0 1 510 1 24023 24268 8 8 510 0 4 477 27774681 28826657 28827478 8 8 477 0 2 405 163237685 163654223 163654972 7 7 405 0 1 397 92450152 93424635 93424862 7 7 397 0 X 248 40935578 41223810 41224346 4 4 248 0 1099213941481 222 1 720 890 4 4 222 0 15 174 103716614 105693726 105694203 4 8 305 0 global files summary: Macaca_mulatta.glob01.3.minQN4.fac2.01.blastresult Macaca_mulatta.glob02.12.minQN4.fac2.01.blastresult Macaca_mulatta.glob03.16.minQN4.fac2.01.blastresult Macaca_mulatta.glob04.11.minQN4.fac2.01.blastresult Macaca_mulatta.glob05.1099214175475.minQN4.fac2.01.blastresult Macaca_mulatta.glob06.17.minQN4.fac2.01.blastresult Macaca_mulatta.glob07.5.minQN4.fac2.01.blastresult Macaca_mulatta.glob08.3.minQN4.fac2.02.blastresult Macaca_mulatta.glob09.12.minQN4.fac2.02.blastresult Macaca_mulatta.glob10.9.minQN4.fac2.01.blastresult Macaca_mulatta.glob11.6.minQN4.fac2.01.blastresult Macaca_mulatta.glob12.5.minQN4.fac2.02.blastresult Macaca_mulatta.glob13.9.minQN4.fac2.02.blastresult Macaca_mulatta.glob14.1.minQN4.fac2.01.blastresult Macaca_mulatta.glob15.3.minQN4.fac2.03.blastresult Macaca_mulatta.glob16.8.minQN4.fac2.01.blastresult Macaca_mulatta.glob17.13.minQN4.fac2.01.blastresult Macaca_mulatta.glob18.13.minQN4.fac2.02.blastresult Macaca_mulatta.glob19.7.minQN4.fac2.01.blastresult Macaca_mulatta.glob20.5.minQN4.fac2.03.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...chromosome 2: 239 163082539 163654226 163654987 4 4 239 0.1 (marked for saving) chromosome X: 251 40651898 41223825 41224334 4 4 251 0 (marked for saving) chromosome 4: 426 28594095 28826663 28827385 7 7 426 0.1 (marked for saving) chromosome 1099214175475: 884 1 270 611 10 10 884 0 (marked for saving) chromosome 10: 429 54236369 54687402 54810064 7 12 721 21.3 (marked for saving) chromosome 15: 296 5655138 6054568 6055041 5 5 296 0 (marked for saving) 178 105121598 105693660 105694425 4 8 304 0.1 (marked for saving) chromosome 7: 539 98972608 99481414 99546028 9 14 828 11.2 (marked for saving) chromosome 1: 536 2536633 2539876 2540442 8 8 536 0 (marked for saving) 495 1 24041 24268 8 8 495 0 (marked for saving) 227 92851661 93424635 93424841 4 4 227 0 (marked for saving) chromosome 8: 569 23568599 23778216 23805966 9 18 1100 4.8 (marked for saving) chromosome 17: 883 7048940 7468448 7621326 10 24 1875 26.5 (marked for saving) chromosome 13: 559 74206155 74728708 74746303 9 16 957 3 (marked for saving) 553 124444123 125017586 125017810 9 9 553 0 (marked for saving) chromosome 6: 600 170576906 171149111 171149431 10 10 600 0 (marked for saving) 521 169279830 169637978 169638349 9 9 521 0 (marked for saving) 496 167539850 167695063 167695383 8 8 496 0 (marked for saving) chromosome 5: 785 75265798 75291867 75292214 10 10 785 0 (marked for saving) 610 3644770 3883048 3883419 10 10 610 0 (marked for saving) 513 7927134 8355534 8355767 8 8 513 0 (marked for saving) chromosome 9: 625 123579311 124044219 124044980 9 9 625 0.1 (marked for saving) 601 122210335 122726302 122739357 9 17 1104 2.2 (marked for saving) 570 100315347 100747140 100846372 9 17 1045 17.2 (marked for saving) 544 99070039 99144112 99144702 9 9 544 0.1 (marked for saving) chromosome 11: 1249 50580570 51037121 51154547 10 86 7305 20.4 (marked for saving) chromosome 12: 1424 39271697 39722823 39831746 10 87 7410 18.9 (marked for saving) 753 99475005 100048186 100048935 10 10 753 0.1 (marked for saving) chromosome 16: 3995 32597795 32758343 33041955 14 112 13860 49.3 (marked for saving) chromosome 3: 1596 98926917 98981188 99131580 10 110 10127 26.1 (marked for saving) 748 187576741 188095024 188095647 10 10 748 0.1 (marked for saving) 567 192040293 192613578 192613826 9 9 567 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 16 3995 32597795 32758343 33041955 14 112 13860 49.3 (saved) 3 1596 98926917 98981188 99131580 10 110 10127 26.1 (saved) 12 1424 39271697 39722823 39831746 10 87 7410 18.9 (saved) 11 1249 50580570 51037121 51154547 10 86 7305 20.4 (saved) 1099214175475 884 1 270 611 10 10 884 0 (saved) 17 883 7048940 7468448 7621326 10 24 1875 26.5 (saved) 5 785 75265798 75291867 75292214 10 10 785 0 (saved) 12 753 99475005 100048186 100048935 10 10 753 0.1 (saved) 3 748 187576741 188095024 188095647 10 10 748 0.1 (saved) 9 625 123579311 124044219 124044980 9 9 625 0.1 (saved) 5 610 3644770 3883048 3883419 10 10 610 0 (saved) 9 601 122210335 122726302 122739357 9 17 1104 2.2 (saved) 6 600 170576906 171149111 171149431 10 10 600 0 (saved) 9 570 100315347 100747140 100846372 9 17 1045 17.2 (saved) 8 569 23568599 23778216 23805966 9 18 1100 4.8 (saved) 3 567 192040293 192613578 192613826 9 9 567 0 (saved) 13 559 74206155 74728708 74746303 9 16 957 3 (saved) 13 553 124444123 125017586 125017810 9 9 553 0 (saved) 9 544 99070039 99144112 99144702 9 9 544 0.1 (saved) 7 539 98972608 99481414 99546028 9 14 828 11.2 (saved) 1 536 2536633 2539876 2540442 8 8 536 0 6 521 169279830 169637978 169638349 9 9 521 0 5 513 7927134 8355534 8355767 8 8 513 0 6 496 167539850 167695063 167695383 8 8 496 0 1 495 1 24041 24268 8 8 495 0 10 429 54236369 54687402 54810064 7 12 721 21.3 4 426 28594095 28826663 28827385 7 7 426 0.1 15 296 5655138 6054568 6055041 5 5 296 0 X 251 40651898 41223825 41224334 4 4 251 0 2 239 163082539 163654226 163654987 4 4 239 0.1 1 227 92851661 93424635 93424841 4 4 227 0 15 178 105121598 105693660 105694425 4 8 304 0.1 global files summary: Macaca_mulatta.glob01.16.minQN4.fac2.01.blastresult Macaca_mulatta.glob02.3.minQN4.fac2.01.blastresult Macaca_mulatta.glob03.12.minQN4.fac2.01.blastresult Macaca_mulatta.glob04.11.minQN4.fac2.01.blastresult Macaca_mulatta.glob05.1099214175475.minQN4.fac2.01.blastresult Macaca_mulatta.glob06.17.minQN4.fac2.01.blastresult Macaca_mulatta.glob07.5.minQN4.fac2.01.blastresult Macaca_mulatta.glob08.12.minQN4.fac2.02.blastresult Macaca_mulatta.glob09.3.minQN4.fac2.02.blastresult Macaca_mulatta.glob10.9.minQN4.fac2.01.blastresult Macaca_mulatta.glob11.5.minQN4.fac2.02.blastresult Macaca_mulatta.glob12.9.minQN4.fac2.02.blastresult Macaca_mulatta.glob13.6.minQN4.fac2.01.blastresult Macaca_mulatta.glob14.9.minQN4.fac2.03.blastresult Macaca_mulatta.glob15.8.minQN4.fac2.01.blastresult Macaca_mulatta.glob16.3.minQN4.fac2.03.blastresult Macaca_mulatta.glob17.13.minQN4.fac2.01.blastresult Macaca_mulatta.glob18.13.minQN4.fac2.02.blastresult Macaca_mulatta.glob19.9.minQN4.fac2.04.blastresult Macaca_mulatta.glob20.7.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...........chromosome 1099214175475: 874 1 270 614 9 9 874 0 (marked for saving) .chromosome 10: 362 53647587 54687573 54810028 6 10 592 10.4 (marked for saving) .chromosome 8: 429 22720209 23778213 23805909 7 14 827 2.3 (marked for saving) chromosome 4: 239 28201720 28826672 28827379 4 4 239 0 (marked for saving) chromosome 7: 364 98379771 99481426 99546082 6 9 544 5.5 (marked for saving) chromosome 13: 480 74074694 74728627 74746303 8 14 816 1.5 (marked for saving) 425 123856216 125017580 125017798 7 7 425 0 (marked for saving) .chromosome 17: 876 7199157 7468451 7621326 10 20 1574 13.1 (marked for saving) .chromosome 6: 534 170445113 171149090 171149422 9 9 534 0 (marked for saving) 405 168613237 169637984 169638367 7 7 405 0 (marked for saving) 307 166734689 167695144 167695353 5 5 307 0 (marked for saving) chromosome 5: 650 74305746 75291918 75292217 9 9 650 0 (marked for saving) 526 2775072 3883090 3883428 9 9 526 0 (marked for saving) 357 8078178 8355456 8355767 6 6 357 0 (marked for saving) chromosome 1: 435 1417663 2539891 2540442 7 7 435 0 (marked for saving) 250 17503 24053 24268 4 4 250 0 (marked for saving) chromosome 9: 453 123566066 124044465 124044977 7 7 453 0 (marked for saving) 436 121955882 122726392 122739366 7 14 852 1.1 (marked for saving) 434 100200896 100746876 100846237 7 13 778 8.5 (marked for saving) 408 98357352 99144217 99144699 7 7 408 0 (marked for saving) chromosome 16: 1418 32026431 32274193 32953353 11 90 7907 58.2 (marked for saving) chromosome 12: 1622 39729658 39734020 40850337 11 85 7313 95.6 (marked for saving) 604 98886418 100048198 100048620 9 9 604 0 (marked for saving) chromosome 3: 1517 98977030 99025864 100086194 12 105 9074 90.8 (marked for saving) 629 187502146 188095033 188095656 9 9 629 0 (marked for saving) 484 191451764 192613539 192613901 8 8 484 0 (marked for saving) chromosome 11: 4785 50444019 50799467 51402814 14 107 13514 51.7 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 11 4785 50444019 50799467 51402814 14 107 13514 51.7 (saved) 12 1622 39729658 39734020 40850337 11 85 7313 95.6 (saved) 3 1517 98977030 99025864 100086194 12 105 9074 90.8 (saved) 16 1418 32026431 32274193 32953353 11 90 7907 58.2 (saved) 17 876 7199157 7468451 7621326 10 20 1574 13.1 (saved) 1099214175475 874 1 270 614 9 9 874 0 (saved) 5 650 74305746 75291918 75292217 9 9 650 0 (saved) 3 629 187502146 188095033 188095656 9 9 629 0 (saved) 12 604 98886418 100048198 100048620 9 9 604 0 (saved) 6 534 170445113 171149090 171149422 9 9 534 0 (saved) 5 526 2775072 3883090 3883428 9 9 526 0 (saved) 3 484 191451764 192613539 192613901 8 8 484 0 (saved) 13 480 74074694 74728627 74746303 8 14 816 1.5 (saved) 9 453 123566066 124044465 124044977 7 7 453 0 (saved) 9 436 121955882 122726392 122739366 7 14 852 1.1 (saved) 1 435 1417663 2539891 2540442 7 7 435 0 (saved) 9 434 100200896 100746876 100846237 7 13 778 8.5 (saved) 8 429 22720209 23778213 23805909 7 14 827 2.3 (saved) 13 425 123856216 125017580 125017798 7 7 425 0 (saved) 9 408 98357352 99144217 99144699 7 7 408 0 (saved) 6 405 168613237 169637984 169638367 7 7 405 0 7 364 98379771 99481426 99546082 6 9 544 5.5 10 362 53647587 54687573 54810028 6 10 592 10.4 5 357 8078178 8355456 8355767 6 6 357 0 6 307 166734689 167695144 167695353 5 5 307 0 1 250 17503 24053 24268 4 4 250 0 4 239 28201720 28826672 28827379 4 4 239 0 global files summary: Macaca_mulatta.glob01.11.minQN4.fac2.01.blastresult Macaca_mulatta.glob02.12.minQN4.fac2.01.blastresult Macaca_mulatta.glob03.3.minQN4.fac2.01.blastresult Macaca_mulatta.glob04.16.minQN4.fac2.01.blastresult Macaca_mulatta.glob05.17.minQN4.fac2.01.blastresult Macaca_mulatta.glob06.1099214175475.minQN4.fac2.01.blastresult Macaca_mulatta.glob07.5.minQN4.fac2.01.blastresult Macaca_mulatta.glob08.3.minQN4.fac2.02.blastresult Macaca_mulatta.glob09.12.minQN4.fac2.02.blastresult Macaca_mulatta.glob10.6.minQN4.fac2.01.blastresult Macaca_mulatta.glob11.5.minQN4.fac2.02.blastresult Macaca_mulatta.glob12.3.minQN4.fac2.03.blastresult Macaca_mulatta.glob13.13.minQN4.fac2.01.blastresult Macaca_mulatta.glob14.9.minQN4.fac2.01.blastresult Macaca_mulatta.glob15.9.minQN4.fac2.02.blastresult Macaca_mulatta.glob16.1.minQN4.fac2.01.blastresult Macaca_mulatta.glob17.9.minQN4.fac2.03.blastresult Macaca_mulatta.glob18.8.minQN4.fac2.01.blastresult Macaca_mulatta.glob19.13.minQN4.fac2.02.blastresult Macaca_mulatta.glob20.9.minQN4.fac2.04.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ........chromosome 4: 300 28284678 28826648 28827133 5 5 300 0 (marked for saving) chromosome 15: 411 5936528 6054610 6054987 7 8 434 0 (marked for saving) chromosome 1099214175475: 927 1 300 578 10 10 927 0 (marked for saving) chromosome 10: 482 53996248 54687426 54810151 8 14 833 15 (marked for saving) chromosome 8: 554 23089411 23778123 23805996 9 17 1021 3.4 (marked for saving) chromosome 1: 495 2429893 2539855 2540706 8 8 495 0.1 (marked for saving) 304 20386 24020 24268 5 5 304 0 (marked for saving) 285 92918908 93424635 93424862 5 5 285 0 (marked for saving) chromosome 7: 553 98925860 99481429 99546001 9 14 848 7.9 (marked for saving) chromosome 17: 812 6807691 7468445 7621326 10 21 1596 18.7 (marked for saving) chromosome 13: 550 74041935 74728687 74746524 9 16 911 2.1 (marked for saving) 426 124205343 125017580 125017792 7 7 426 0 (marked for saving) chromosome 6: 566 170335849 171149129 171149527 9 9 566 0 (marked for saving) 518 169345138 169637750 169638238 9 9 518 0 (marked for saving) 479 167612413 167695108 168393969 7 7 479 85.7 (marked for saving) chromosome 5: 731 74594825 75291900 75292244 10 10 731 0 (marked for saving) 607 3699872 3883003 3883437 10 10 607 0 (marked for saving) 545 8111186 8355441 8355773 9 9 545 0 (marked for saving) chromosome 9: 573 123276646 124044474 124044989 9 9 573 0 (marked for saving) 550 100270135 100747092 100846276 9 14 836 12.1 (marked for saving) 530 98733106 99144199 99144708 9 9 530 0 (marked for saving) 518 122583556 122726263 122739324 8 16 988 1.6 (marked for saving) chromosome 11: 1263 50340546 51037199 51154580 10 87 7386 14.3 (marked for saving) chromosome 16: 1270 32461132 32758415 32953191 10 94 7964 23.8 (marked for saving) chromosome 12: 3611 39429257 39563563 39986152 13 106 12157 51.8 (marked for saving) 678 99234770 100048180 100048935 10 10 678 0 (marked for saving) chromosome 3: 1536 98809406 98980072 99131547 10 105 9145 18.5 (marked for saving) 700 187794008 188095018 188095530 10 10 700 0 (marked for saving) 440 191801699 192613575 192613838 7 7 440 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 12 3611 39429257 39563563 39986152 13 106 12157 51.8 (saved) 3 1536 98809406 98980072 99131547 10 105 9145 18.5 (saved) 16 1270 32461132 32758415 32953191 10 94 7964 23.8 (saved) 11 1263 50340546 51037199 51154580 10 87 7386 14.3 (saved) 1099214175475 927 1 300 578 10 10 927 0 (saved) 17 812 6807691 7468445 7621326 10 21 1596 18.7 (saved) 5 731 74594825 75291900 75292244 10 10 731 0 (saved) 3 700 187794008 188095018 188095530 10 10 700 0 (saved) 12 678 99234770 100048180 100048935 10 10 678 0 (saved) 5 607 3699872 3883003 3883437 10 10 607 0 (saved) 9 573 123276646 124044474 124044989 9 9 573 0 (saved) 6 566 170335849 171149129 171149527 9 9 566 0 (saved) 8 554 23089411 23778123 23805996 9 17 1021 3.4 (saved) 7 553 98925860 99481429 99546001 9 14 848 7.9 (saved) 13 550 74041935 74728687 74746524 9 16 911 2.1 (saved) 9 550 100270135 100747092 100846276 9 14 836 12.1 (saved) 5 545 8111186 8355441 8355773 9 9 545 0 (saved) 9 530 98733106 99144199 99144708 9 9 530 0 (saved) 6 518 169345138 169637750 169638238 9 9 518 0 (saved) 9 518 122583556 122726263 122739324 8 16 988 1.6 (saved) 1 495 2429893 2539855 2540706 8 8 495 0.1 10 482 53996248 54687426 54810151 8 14 833 15 6 479 167612413 167695108 168393969 7 7 479 85.7 3 440 191801699 192613575 192613838 7 7 440 0 13 426 124205343 125017580 125017792 7 7 426 0 15 411 5936528 6054610 6054987 7 8 434 0 1 304 20386 24020 24268 5 5 304 0 4 300 28284678 28826648 28827133 5 5 300 0 1 285 92918908 93424635 93424862 5 5 285 0 global files summary: Macaca_mulatta.glob01.12.minQN4.fac2.01.blastresult Macaca_mulatta.glob02.3.minQN4.fac2.01.blastresult Macaca_mulatta.glob03.16.minQN4.fac2.01.blastresult Macaca_mulatta.glob04.11.minQN4.fac2.01.blastresult Macaca_mulatta.glob05.1099214175475.minQN4.fac2.01.blastresult Macaca_mulatta.glob06.17.minQN4.fac2.01.blastresult Macaca_mulatta.glob07.5.minQN4.fac2.01.blastresult Macaca_mulatta.glob08.3.minQN4.fac2.02.blastresult Macaca_mulatta.glob09.12.minQN4.fac2.02.blastresult Macaca_mulatta.glob10.5.minQN4.fac2.02.blastresult Macaca_mulatta.glob11.9.minQN4.fac2.01.blastresult Macaca_mulatta.glob12.6.minQN4.fac2.01.blastresult Macaca_mulatta.glob13.8.minQN4.fac2.01.blastresult Macaca_mulatta.glob14.7.minQN4.fac2.01.blastresult Macaca_mulatta.glob15.13.minQN4.fac2.01.blastresult Macaca_mulatta.glob16.9.minQN4.fac2.02.blastresult Macaca_mulatta.glob17.5.minQN4.fac2.03.blastresult Macaca_mulatta.glob18.9.minQN4.fac2.03.blastresult Macaca_mulatta.glob19.6.minQN4.fac2.02.blastresult Macaca_mulatta.glob20.9.minQN4.fac2.04.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .......................chromosome ChrUn.573: 439 1 130634 130957 7 7 439 0 (marked for saving) chromosome ChrUn.1971: 398 1 67956 68183 7 7 398 0 (marked for saving) .chromosome 20: 519 590554 2565516 2566100 8 8 519 0 (marked for saving) chromosome ChrUn.44: 640 1 538706 539266 10 10 640 0 (marked for saving) chromosome ChrUn.82333: 765 1 3 665 12 12 765 0 (marked for saving) chromosome 21: 667 30629131 31472664 32612749 11 18 1074 57.4 (marked for saving) chromosome 13: 628 24277503 25627241 25709961 10 18 1095 4.1 (marked for saving) chromosome 8: 682 35262575 37210671 37246360 11 20 1213 1.7 (marked for saving) chromosome 12: 1047 15173760 17059544 17152439 12 24 1959 4.6 (marked for saving) chromosome 3: 866 80310985 82288825 82289268 12 12 866 0 (marked for saving) 595 59186329 61161444 61161797 10 10 595 0 (marked for saving) chromosome 11: 663 6582035 7772953 7790274 11 20 1169 0.8 (marked for saving) 534 81669863 83176048 83646100 9 10 592 23.6 (marked for saving) chromosome 6: 931 32814431 34712862 34713209 12 12 931 0 (marked for saving) 732 19323638 19551754 19552125 12 12 732 0 (marked for saving) 730 59309594 61290498 61290890 12 12 730 0 (marked for saving) chromosome 26: 759 28024550 29892002 29892733 11 11 759 0 (marked for saving) 710 11664854 11932375 13595601 11 30 1814 83.7 (marked for saving) 570 27061631 27814530 27827253 9 17 1051 0.6 (marked for saving) 475 32948342 34925322 34926386 8 8 475 0 (marked for saving) chromosome 19: 1799 29654979 30587651 31423504 12 103 9342 42.1 (marked for saving) chromosome 5: 1476 15062396 16729720 16874969 12 101 8598 7.3 (marked for saving) chromosome 2: 1707 15847593 16934870 17086035 12 102 8927 7.6 (marked for saving) 632 41181297 43160630 43161097 10 10 632 0 (marked for saving) chromosome 4: 3014 35183153 37098097 37159206 13 93 10716 3 (marked for saving) 2370 38588114 39784917 40179400 13 64 6922 19.8 (marked for saving) 883 62472476 64450887 64451576 12 12 883 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 4 3014 35183153 37098097 37159206 13 93 10716 3 (saved) 4 2370 38588114 39784917 40179400 13 64 6922 19.8 (saved) 19 1799 29654979 30587651 31423504 12 103 9342 42.1 (saved) 2 1707 15847593 16934870 17086035 12 102 8927 7.6 (saved) 5 1476 15062396 16729720 16874969 12 101 8598 7.3 (saved) 12 1047 15173760 17059544 17152439 12 24 1959 4.6 (saved) 6 931 32814431 34712862 34713209 12 12 931 0 (saved) 4 883 62472476 64450887 64451576 12 12 883 0 (saved) 3 866 80310985 82288825 82289268 12 12 866 0 (saved) ChrUn.82333 765 1 3 665 12 12 765 0 (saved) 26 759 28024550 29892002 29892733 11 11 759 0 (saved) 6 732 19323638 19551754 19552125 12 12 732 0 (saved) 6 730 59309594 61290498 61290890 12 12 730 0 (saved) 26 710 11664854 11932375 13595601 11 30 1814 83.7 (saved) 8 682 35262575 37210671 37246360 11 20 1213 1.7 (saved) 21 667 30629131 31472664 32612749 11 18 1074 57.4 (saved) 11 663 6582035 7772953 7790274 11 20 1169 0.8 (saved) ChrUn.44 640 1 538706 539266 10 10 640 0 (saved) 2 632 41181297 43160630 43161097 10 10 632 0 (saved) 13 628 24277503 25627241 25709961 10 18 1095 4.1 (saved) 3 595 59186329 61161444 61161797 10 10 595 0 26 570 27061631 27814530 27827253 9 17 1051 0.6 11 534 81669863 83176048 83646100 9 10 592 23.6 20 519 590554 2565516 2566100 8 8 519 0 26 475 32948342 34925322 34926386 8 8 475 0 ChrUn.573 439 1 130634 130957 7 7 439 0 ChrUn.1971 398 1 67956 68183 7 7 398 0 global files summary: Bos_taurus.glob01.4.minQN4.fac2.01.blastresult Bos_taurus.glob02.4.minQN4.fac2.02.blastresult Bos_taurus.glob03.19.minQN4.fac2.01.blastresult Bos_taurus.glob04.2.minQN4.fac2.01.blastresult Bos_taurus.glob05.5.minQN4.fac2.01.blastresult Bos_taurus.glob06.12.minQN4.fac2.01.blastresult Bos_taurus.glob07.6.minQN4.fac2.01.blastresult Bos_taurus.glob08.4.minQN4.fac2.03.blastresult Bos_taurus.glob09.3.minQN4.fac2.01.blastresult Bos_taurus.glob10.ChrUn.82333.minQN4.fac2.01.blastresult Bos_taurus.glob11.26.minQN4.fac2.01.blastresult Bos_taurus.glob12.6.minQN4.fac2.02.blastresult Bos_taurus.glob13.6.minQN4.fac2.03.blastresult Bos_taurus.glob14.26.minQN4.fac2.02.blastresult Bos_taurus.glob15.8.minQN4.fac2.01.blastresult Bos_taurus.glob16.21.minQN4.fac2.01.blastresult Bos_taurus.glob17.11.minQN4.fac2.01.blastresult Bos_taurus.glob18.ChrUn.44.minQN4.fac2.01.blastresult Bos_taurus.glob19.2.minQN4.fac2.02.blastresult Bos_taurus.glob20.13.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ....chromosome ChrUn.12494: 224 1 14094 14480 4 4 224 0 (marked for saving) chromosome ChrUn.1971: 232 1 67956 68252 4 4 232 0 (marked for saving) .chromosome ChrUn.573: 502 1 130514 130912 8 8 502 0 (marked for saving) chromosome ChrUn.44: 513 1 538871 539119 8 8 513 0 (marked for saving) chromosome 20: 510 2011073 2565576 2566106 8 8 510 0 (marked for saving) chromosome ChrUn.82333: 574 1 3 470 9 9 574 0 (marked for saving) chromosome 7: 173 22114742 22318718 22319120 4 8 298 0 (marked for saving) chromosome 13: 535 25135893 25627244 25710117 9 15 880 14.4 (marked for saving) chromosome 8: 570 36673265 37210497 37246357 9 18 1102 6.2 (marked for saving) chromosome 3: 744 81716682 82288633 82289292 10 10 744 0.1 (marked for saving) 524 60903070 61161429 61161797 9 9 524 0 (marked for saving) chromosome 21: 468 31296380 31472496 31473122 8 8 468 0.1 (marked for saving) 414 32038388 32612363 32612926 7 7 414 0 (marked for saving) chromosome 12: 898 16579712 17059616 17152280 10 20 1676 16.1 (marked for saving) chromosome 11: 547 7241329 7772998 7790214 9 15 896 2.9 (marked for saving) 289 82604033 83176009 83176377 5 5 289 0 (marked for saving) chromosome 6: 790 34478513 34712877 34713290 10 10 790 0 (marked for saving) 618 60716261 61290321 61290947 10 10 618 0.1 (marked for saving) 594 19330621 19551712 19552032 10 10 594 0 (marked for saving) chromosome 26: 639 29818838 29892227 29892718 9 9 639 0 (marked for saving) 569 13270334 13526780 13595580 9 17 1041 11.9 (marked for saving) 545 11639642 11932447 11933025 9 9 545 0.1 (marked for saving) 495 27805638 27814530 27827262 8 16 968 2.2 (marked for saving) 302 34351414 34925646 34926380 5 5 302 0.1 (marked for saving) chromosome 5: 1259 16301722 16729819 16874819 10 86 7423 25.2 (marked for saving) chromosome 2: 1452 16903727 16934870 17074091 10 85 7517 24.2 (marked for saving) 559 42586407 43160672 43161028 9 9 559 0 (marked for saving) chromosome 19: 2355 31002375 31195622 31423477 13 65 7245 39.6 (marked for saving) 1879 30545091 30587771 30608457 10 33 4131 3.5 (marked for saving) chromosome 4: 1497 36667214 37098097 37159236 10 77 7778 10.6 (marked for saving) 954 39804930 40097990 40179412 10 44 3421 14.1 (marked for saving) 742 63877050 64450890 64451354 10 10 742 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 19 2355 31002375 31195622 31423477 13 65 7245 39.6 (saved) 19 1879 30545091 30587771 30608457 10 33 4131 3.5 (saved) 4 1497 36667214 37098097 37159236 10 77 7778 10.6 (saved) 2 1452 16903727 16934870 17074091 10 85 7517 24.2 (saved) 5 1259 16301722 16729819 16874819 10 86 7423 25.2 (saved) 4 954 39804930 40097990 40179412 10 44 3421 14.1 (saved) 12 898 16579712 17059616 17152280 10 20 1676 16.1 (saved) 6 790 34478513 34712877 34713290 10 10 790 0 (saved) 3 744 81716682 82288633 82289292 10 10 744 0.1 (saved) 4 742 63877050 64450890 64451354 10 10 742 0 (saved) 26 639 29818838 29892227 29892718 9 9 639 0 (saved) 6 618 60716261 61290321 61290947 10 10 618 0.1 (saved) 6 594 19330621 19551712 19552032 10 10 594 0 (saved) ChrUn.82333 574 1 3 470 9 9 574 0 (saved) 8 570 36673265 37210497 37246357 9 18 1102 6.2 (saved) 26 569 13270334 13526780 13595580 9 17 1041 11.9 (saved) 2 559 42586407 43160672 43161028 9 9 559 0 (saved) 11 547 7241329 7772998 7790214 9 15 896 2.9 (saved) 26 545 11639642 11932447 11933025 9 9 545 0.1 (saved) 13 535 25135893 25627244 25710117 9 15 880 14.4 (saved) 3 524 60903070 61161429 61161797 9 9 524 0 ChrUn.44 513 1 538871 539119 8 8 513 0 20 510 2011073 2565576 2566106 8 8 510 0 ChrUn.573 502 1 130514 130912 8 8 502 0 26 495 27805638 27814530 27827262 8 16 968 2.2 21 468 31296380 31472496 31473122 8 8 468 0.1 21 414 32038388 32612363 32612926 7 7 414 0 26 302 34351414 34925646 34926380 5 5 302 0.1 11 289 82604033 83176009 83176377 5 5 289 0 ChrUn.1971 232 1 67956 68252 4 4 232 0 ChrUn.12494 224 1 14094 14480 4 4 224 0 7 173 22114742 22318718 22319120 4 8 298 0 global files summary: Bos_taurus.glob01.19.minQN4.fac2.01.blastresult Bos_taurus.glob02.19.minQN4.fac2.02.blastresult Bos_taurus.glob03.4.minQN4.fac2.01.blastresult Bos_taurus.glob04.2.minQN4.fac2.01.blastresult Bos_taurus.glob05.5.minQN4.fac2.01.blastresult Bos_taurus.glob06.4.minQN4.fac2.02.blastresult Bos_taurus.glob07.12.minQN4.fac2.01.blastresult Bos_taurus.glob08.6.minQN4.fac2.01.blastresult Bos_taurus.glob09.3.minQN4.fac2.01.blastresult Bos_taurus.glob10.4.minQN4.fac2.03.blastresult Bos_taurus.glob11.26.minQN4.fac2.01.blastresult Bos_taurus.glob12.6.minQN4.fac2.02.blastresult Bos_taurus.glob13.6.minQN4.fac2.03.blastresult Bos_taurus.glob14.ChrUn.82333.minQN4.fac2.01.blastresult Bos_taurus.glob15.8.minQN4.fac2.01.blastresult Bos_taurus.glob16.26.minQN4.fac2.02.blastresult Bos_taurus.glob17.2.minQN4.fac2.02.blastresult Bos_taurus.glob18.11.minQN4.fac2.01.blastresult Bos_taurus.glob19.26.minQN4.fac2.03.blastresult Bos_taurus.glob20.13.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...................................................chromosome ChrUn.573: 257 1 130607 130993 4 4 257 0 (marked for saving) .......chromosome ChrUn.44: 366 1 538793 539383 6 6 366 0 (marked for saving) .chromosome ChrUn.82333: 374 1 3 212 6 6 374 0 (marked for saving) ....chromosome 20: 309 2402843 2565741 2566040 5 5 309 0 (marked for saving) .chromosome 11: 481 6787497 7772950 7790274 8 14 820 1.4 (marked for saving) chromosome 21: 541 31455619 31472721 32612935 9 12 726 97.7 (marked for saving) chromosome 12: 743 15987127 17059493 17152154 9 18 1389 7.9 (marked for saving) chromosome 13: 359 24593910 25627253 25709961 6 10 592 7 (marked for saving) .chromosome 8: 421 36925280 37210749 37246294 7 14 815 3 (marked for saving) chromosome 3: 604 81127605 82288837 82289259 9 9 604 0 (marked for saving) 409 60183545 61161480 61161791 7 7 409 0 (marked for saving) chromosome 6: 648 34539673 34712949 34713254 9 9 648 0 (marked for saving) 531 18735367 19551730 19551960 9 9 531 0 (marked for saving) 525 60489305 61290585 61290890 9 9 525 0 (marked for saving) chromosome 26: 461 11804697 11932501 11932962 8 8 461 0 (marked for saving) 451 29656737 29892353 29892748 7 7 451 0 (marked for saving) 431 12592287 13526819 13595586 7 12 720 5.8 (marked for saving) 250 27679011 27814521 27827199 4 8 492 1 (marked for saving) 226 33763873 34925892 34926422 4 4 226 0 (marked for saving) chromosome 19: 1303 30436601 30587825 31423489 10 76 6491 71.6 (marked for saving) chromosome 2: 1221 16645472 16934945 17074109 9 78 6852 11.9 (marked for saving) 434 42437586 43160585 43161121 7 7 434 0 (marked for saving) chromosome 5: 4148 15774053 16526128 16874969 13 93 11497 29.9 (marked for saving) chromosome 4: 1077 39257058 39661371 40179376 10 41 3612 44.4 (marked for saving) 924 36322556 37099437 37159149 9 65 5592 5.1 (marked for saving) 621 63287304 64450917 64451345 9 9 621 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 5 4148 15774053 16526128 16874969 13 93 11497 29.9 (saved) 19 1303 30436601 30587825 31423489 10 76 6491 71.6 (saved) 2 1221 16645472 16934945 17074109 9 78 6852 11.9 (saved) 4 1077 39257058 39661371 40179376 10 41 3612 44.4 (saved) 4 924 36322556 37099437 37159149 9 65 5592 5.1 (saved) 12 743 15987127 17059493 17152154 9 18 1389 7.9 (saved) 6 648 34539673 34712949 34713254 9 9 648 0 (saved) 4 621 63287304 64450917 64451345 9 9 621 0 (saved) 3 604 81127605 82288837 82289259 9 9 604 0 (saved) 21 541 31455619 31472721 32612935 9 12 726 97.7 (saved) 6 531 18735367 19551730 19551960 9 9 531 0 (saved) 6 525 60489305 61290585 61290890 9 9 525 0 (saved) 11 481 6787497 7772950 7790274 8 14 820 1.4 (saved) 26 461 11804697 11932501 11932962 8 8 461 0 (saved) 26 451 29656737 29892353 29892748 7 7 451 0 (saved) 2 434 42437586 43160585 43161121 7 7 434 0 (saved) 26 431 12592287 13526819 13595586 7 12 720 5.8 (saved) 8 421 36925280 37210749 37246294 7 14 815 3 (saved) 3 409 60183545 61161480 61161791 7 7 409 0 (saved) ChrUn.82333 374 1 3 212 6 6 374 0 (saved) ChrUn.44 366 1 538793 539383 6 6 366 0 13 359 24593910 25627253 25709961 6 10 592 7 20 309 2402843 2565741 2566040 5 5 309 0 ChrUn.573 257 1 130607 130993 4 4 257 0 26 250 27679011 27814521 27827199 4 8 492 1 26 226 33763873 34925892 34926422 4 4 226 0 global files summary: Bos_taurus.glob01.5.minQN4.fac2.01.blastresult Bos_taurus.glob02.19.minQN4.fac2.01.blastresult Bos_taurus.glob03.2.minQN4.fac2.01.blastresult Bos_taurus.glob04.4.minQN4.fac2.01.blastresult Bos_taurus.glob05.4.minQN4.fac2.02.blastresult Bos_taurus.glob06.12.minQN4.fac2.01.blastresult Bos_taurus.glob07.6.minQN4.fac2.01.blastresult Bos_taurus.glob08.4.minQN4.fac2.03.blastresult Bos_taurus.glob09.3.minQN4.fac2.01.blastresult Bos_taurus.glob10.21.minQN4.fac2.01.blastresult Bos_taurus.glob11.6.minQN4.fac2.02.blastresult Bos_taurus.glob12.6.minQN4.fac2.03.blastresult Bos_taurus.glob13.11.minQN4.fac2.01.blastresult Bos_taurus.glob14.26.minQN4.fac2.01.blastresult Bos_taurus.glob15.26.minQN4.fac2.02.blastresult Bos_taurus.glob16.2.minQN4.fac2.02.blastresult Bos_taurus.glob17.26.minQN4.fac2.03.blastresult Bos_taurus.glob18.8.minQN4.fac2.01.blastresult Bos_taurus.glob19.3.minQN4.fac2.02.blastresult Bos_taurus.glob20.ChrUn.82333.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .......................chromosome ChrUn.1971: 288 4078 67956 68288 5 5 288 0 (marked for saving) chromosome 20: 365 1754677 2565759 2566616 6 6 365 0.1 (marked for saving) chromosome ChrUn.82333: 510 1 3 578 8 8 510 0 (marked for saving) chromosome ChrUn.44: 496 4078 538778 539131 8 8 496 0 (marked for saving) chromosome 13: 431 25456323 25627268 25710141 7 13 786 10.1 (marked for saving) chromosome 21: 533 30857196 30860717 31473122 8 9 590 75.1 (marked for saving) 365 31798983 32611985 32612839 6 6 365 0.1 (marked for saving) chromosome 8: 500 36432238 37210482 37246366 8 16 959 4.4 (marked for saving) chromosome 3: 681 81477466 82288819 82289262 10 10 681 0 (marked for saving) 527 61096543 61161426 61161950 9 9 527 0 (marked for saving) chromosome 12: 826 16338243 17059616 17152307 10 20 1558 11.3 (marked for saving) chromosome 11: 530 7182083 7773034 7790322 9 15 871 2.1 (marked for saving) 351 82361963 83176143 83176377 6 7 376 0 (marked for saving) chromosome 6: 725 34269911 34712757 34713248 10 10 725 0 (marked for saving) 608 60476867 61290336 61290872 10 10 608 0 (marked for saving) 561 19270628 19551730 19552107 9 9 561 0 (marked for saving) chromosome 26: 528 11557775 11932492 11932986 9 9 528 0 (marked for saving) 514 29186723 29892176 29893057 8 8 514 0.1 (marked for saving) 490 13384271 13526804 13595577 8 13 775 8.4 (marked for saving) 361 34111739 34925709 34926389 6 6 361 0 (marked for saving) 325 27152300 27814563 27827253 5 10 618 1.5 (marked for saving) chromosome 19: 1316 30535098 30587828 31239752 10 71 6066 79.9 (marked for saving) chromosome 5: 1251 16061486 16729786 16874708 10 85 7133 17.7 (marked for saving) chromosome 2: 3637 16587044 16934939 17086630 11 91 10906 18.6 (marked for saving) 433 42349607 43160585 43161034 7 7 433 0 (marked for saving) chromosome 4: 1200 39949453 40097176 40179364 10 46 4047 10 (marked for saving) 1186 37050706 37099203 37159173 10 72 6138 7.3 (marked for saving) 696 63636823 64450908 64451360 10 10 696 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 2 3637 16587044 16934939 17086630 11 91 10906 18.6 (saved) 19 1316 30535098 30587828 31239752 10 71 6066 79.9 (saved) 5 1251 16061486 16729786 16874708 10 85 7133 17.7 (saved) 4 1200 39949453 40097176 40179364 10 46 4047 10 (saved) 4 1186 37050706 37099203 37159173 10 72 6138 7.3 (saved) 12 826 16338243 17059616 17152307 10 20 1558 11.3 (saved) 6 725 34269911 34712757 34713248 10 10 725 0 (saved) 4 696 63636823 64450908 64451360 10 10 696 0 (saved) 3 681 81477466 82288819 82289262 10 10 681 0 (saved) 6 608 60476867 61290336 61290872 10 10 608 0 (saved) 6 561 19270628 19551730 19552107 9 9 561 0 (saved) 21 533 30857196 30860717 31473122 8 9 590 75.1 (saved) 11 530 7182083 7773034 7790322 9 15 871 2.1 (saved) 26 528 11557775 11932492 11932986 9 9 528 0 (saved) 3 527 61096543 61161426 61161950 9 9 527 0 (saved) 26 514 29186723 29892176 29893057 8 8 514 0.1 (saved) ChrUn.82333 510 1 3 578 8 8 510 0 (saved) 8 500 36432238 37210482 37246366 8 16 959 4.4 (saved) ChrUn.44 496 4078 538778 539131 8 8 496 0 (saved) 26 490 13384271 13526804 13595577 8 13 775 8.4 (saved) 2 433 42349607 43160585 43161034 7 7 433 0 13 431 25456323 25627268 25710141 7 13 786 10.1 20 365 1754677 2565759 2566616 6 6 365 0.1 21 365 31798983 32611985 32612839 6 6 365 0.1 26 361 34111739 34925709 34926389 6 6 361 0 11 351 82361963 83176143 83176377 6 7 376 0 26 325 27152300 27814563 27827253 5 10 618 1.5 ChrUn.1971 288 4078 67956 68288 5 5 288 0 global files summary: Bos_taurus.glob01.2.minQN4.fac2.01.blastresult Bos_taurus.glob02.19.minQN4.fac2.01.blastresult Bos_taurus.glob03.5.minQN4.fac2.01.blastresult Bos_taurus.glob04.4.minQN4.fac2.01.blastresult Bos_taurus.glob05.4.minQN4.fac2.02.blastresult Bos_taurus.glob06.12.minQN4.fac2.01.blastresult Bos_taurus.glob07.6.minQN4.fac2.01.blastresult Bos_taurus.glob08.4.minQN4.fac2.03.blastresult Bos_taurus.glob09.3.minQN4.fac2.01.blastresult Bos_taurus.glob10.6.minQN4.fac2.02.blastresult Bos_taurus.glob11.6.minQN4.fac2.03.blastresult Bos_taurus.glob12.21.minQN4.fac2.01.blastresult Bos_taurus.glob13.11.minQN4.fac2.01.blastresult Bos_taurus.glob14.26.minQN4.fac2.01.blastresult Bos_taurus.glob15.3.minQN4.fac2.02.blastresult Bos_taurus.glob16.26.minQN4.fac2.02.blastresult Bos_taurus.glob17.ChrUn.82333.minQN4.fac2.01.blastresult Bos_taurus.glob18.8.minQN4.fac2.01.blastresult Bos_taurus.glob19.ChrUn.44.minQN4.fac2.01.blastresult Bos_taurus.glob20.26.minQN4.fac2.03.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .chromosome Zv6_NA174: 338 1 50599 50889 6 6 338 0 (marked for saving) .chromosome 8: 650 43804904 45760282 45788662 11 21 1218 1.4 (marked for saving) chromosome 5: 922 73414811 75390663 75391022 12 12 922 0 (marked for saving) 524 25417766 26499538 26499795 9 9 524 0 (marked for saving) chromosome 7: 686 47649601 48708890 49632228 11 15 911 46.5 (marked for saving) 278 496351 1212591 2457083 5 5 278 62.6 (marked for saving) chromosome 20: 921 21606077 23233879 23234202 12 12 921 0 (marked for saving) 582 55586198 57569034 57569507 10 10 582 0 (marked for saving) chromosome 21: 731 44434459 46415541 46415921 12 12 731 0 (marked for saving) 523 10950688 11536143 11536358 9 9 523 0 (marked for saving) chromosome 11: 1204 1 1379040 1406538 12 38 3079 1.3 (marked for saving) chromosome 24: 1149 23448809 23627245 25218683 12 25 2163 80.1 (marked for saving) 879 35559749 37540310 37540807 12 12 879 0 (marked for saving) chromosome 10: 533 46981968 48960893 48961288 9 9 533 0 (marked for saving) 506 16396881 17796362 17796610 8 8 506 0 (marked for saving) 257 27306654 27530348 28380332 6 22 843 42.8 (marked for saving) chromosome 6: 866 14040158 14923411 14923812 12 12 866 0 (marked for saving) 777 35512259 37029829 37032135 11 12 897 0.1 (marked for saving) 397 57133265 58821077 59109298 7 14 794 14.5 (marked for saving) 397 50194292 51792881 51793108 7 7 397 0 (marked for saving) chromosome 2: 1386 11908795 12067389 12108344 12 67 5588 2 (marked for saving) chromosome 1: 723 60049991 60485243 60485611 12 12 723 0 (marked for saving) 677 51889997 53576750 53579805 11 22 1312 0.1 (marked for saving) 655 6920687 8439814 8485096 11 22 1310 2.2 (marked for saving) 635 44196572 45396636 45396977 11 11 635 0 (marked for saving) 223 2542880 3962221 3962424 4 4 223 0 (marked for saving) chromosome 13: 788 46259157 47548803 48238891 12 45 2796 34.7 (marked for saving) 744 29184717 29392940 29393314 12 12 744 0 (marked for saving) 697 32053620 33595969 33631871 11 19 1161 1.8 (marked for saving) chromosome 17: 708 47506312 47947323 47955783 12 20 1160 0.4 (marked for saving) 672 25160635 25339089 25507222 11 40 2430 8.4 (marked for saving) 614 53134921 54280835 55113750 10 18 1084 41.9 (marked for saving) chromosome 16: 1943 19258901 21045634 21242048 14 78 7047 9.8 (marked for saving) chromosome 19: 2414 13074680 13769305 13954144 13 101 9546 9.3 (marked for saving) chromosome 12: 1338 32688661 34137768 34671880 13 106 9483 26.9 (marked for saving) chromosome 14: 766 1 49143 1304523 12 23 1410 63.2 (marked for saving) 752 15029479 16242037 16242678 11 11 752 0 (marked for saving) 737 25581880 27097803 27401005 12 34 2036 15.2 (marked for saving) 695 2035036 3164826 3480880 11 21 1277 15.9 (marked for saving) 300 65945062 66427829 67926438 5 15 900 75.4 (marked for saving) chromosome 9: 1813 1171387 1312491 1621062 12 104 8785 15.5 (marked for saving) 225 3037663 5014725 5014916 4 4 225 0 (marked for saving) chromosome 23: 1506 33927707 35634466 35764976 12 138 11686 6.5 (marked for saving) chromosome 3: 1957 22920196 22929810 24716161 12 168 15380 89.9 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 19 2414 13074680 13769305 13954144 13 101 9546 9.3 (saved) 3 1957 22920196 22929810 24716161 12 168 15380 89.9 (saved) 16 1943 19258901 21045634 21242048 14 78 7047 9.8 (saved) 9 1813 1171387 1312491 1621062 12 104 8785 15.5 (saved) 23 1506 33927707 35634466 35764976 12 138 11686 6.5 (saved) 2 1386 11908795 12067389 12108344 12 67 5588 2 (saved) 12 1338 32688661 34137768 34671880 13 106 9483 26.9 (saved) 11 1204 1 1379040 1406538 12 38 3079 1.3 (saved) 24 1149 23448809 23627245 25218683 12 25 2163 80.1 (saved) 5 922 73414811 75390663 75391022 12 12 922 0 (saved) 20 921 21606077 23233879 23234202 12 12 921 0 (saved) 24 879 35559749 37540310 37540807 12 12 879 0 (saved) 6 866 14040158 14923411 14923812 12 12 866 0 (saved) 13 788 46259157 47548803 48238891 12 45 2796 34.7 (saved) 6 777 35512259 37029829 37032135 11 12 897 0.1 (saved) 14 766 1 49143 1304523 12 23 1410 63.2 (saved) 14 752 15029479 16242037 16242678 11 11 752 0 (saved) 13 744 29184717 29392940 29393314 12 12 744 0 (saved) 14 737 25581880 27097803 27401005 12 34 2036 15.2 (saved) 21 731 44434459 46415541 46415921 12 12 731 0 (saved) 1 723 60049991 60485243 60485611 12 12 723 0 17 708 47506312 47947323 47955783 12 20 1160 0.4 13 697 32053620 33595969 33631871 11 19 1161 1.8 14 695 2035036 3164826 3480880 11 21 1277 15.9 7 686 47649601 48708890 49632228 11 15 911 46.5 1 677 51889997 53576750 53579805 11 22 1312 0.1 17 672 25160635 25339089 25507222 11 40 2430 8.4 1 655 6920687 8439814 8485096 11 22 1310 2.2 8 650 43804904 45760282 45788662 11 21 1218 1.4 1 635 44196572 45396636 45396977 11 11 635 0 17 614 53134921 54280835 55113750 10 18 1084 41.9 20 582 55586198 57569034 57569507 10 10 582 0 10 533 46981968 48960893 48961288 9 9 533 0 5 524 25417766 26499538 26499795 9 9 524 0 21 523 10950688 11536143 11536358 9 9 523 0 10 506 16396881 17796362 17796610 8 8 506 0 6 397 57133265 58821077 59109298 7 14 794 14.5 6 397 50194292 51792881 51793108 7 7 397 0 Zv6_NA174 338 1 50599 50889 6 6 338 0 14 300 65945062 66427829 67926438 5 15 900 75.4 7 278 496351 1212591 2457083 5 5 278 62.6 10 257 27306654 27530348 28380332 6 22 843 42.8 9 225 3037663 5014725 5014916 4 4 225 0 1 223 2542880 3962221 3962424 4 4 223 0 global files summary: Danio_rerio.glob01.19.minQN4.fac2.01.blastresult Danio_rerio.glob02.3.minQN4.fac2.01.blastresult Danio_rerio.glob03.16.minQN4.fac2.01.blastresult Danio_rerio.glob04.9.minQN4.fac2.01.blastresult Danio_rerio.glob05.23.minQN4.fac2.01.blastresult Danio_rerio.glob06.2.minQN4.fac2.01.blastresult Danio_rerio.glob07.12.minQN4.fac2.01.blastresult Danio_rerio.glob08.11.minQN4.fac2.01.blastresult Danio_rerio.glob09.24.minQN4.fac2.01.blastresult Danio_rerio.glob10.5.minQN4.fac2.01.blastresult Danio_rerio.glob11.20.minQN4.fac2.01.blastresult Danio_rerio.glob12.24.minQN4.fac2.02.blastresult Danio_rerio.glob13.6.minQN4.fac2.01.blastresult Danio_rerio.glob14.13.minQN4.fac2.01.blastresult Danio_rerio.glob15.6.minQN4.fac2.02.blastresult Danio_rerio.glob16.14.minQN4.fac2.01.blastresult Danio_rerio.glob17.14.minQN4.fac2.02.blastresult Danio_rerio.glob18.13.minQN4.fac2.02.blastresult Danio_rerio.glob19.14.minQN4.fac2.03.blastresult Danio_rerio.glob20.21.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...chromosome Zv6_NA174: 396 1 50650 50889 7 7 396 0 (marked for saving) chromosome 21: 599 45841423 46415526 46415930 10 10 599 0 (marked for saving) 289 11504859 11536107 11536358 5 5 289 0 (marked for saving) chromosome 5: 778 74816723 75390636 75391022 10 10 778 0 (marked for saving) 291 26206571 26499580 26499795 5 5 291 0 (marked for saving) chromosome 7: 618 49059924 49632001 49632249 10 10 618 0 (marked for saving) 230 2043076 2456949 2457119 4 4 230 0 (marked for saving) 221 48430080 48708890 48709045 4 4 221 0 (marked for saving) chromosome 20: 772 23159443 23233888 23234193 10 10 772 0 (marked for saving) 406 57455743 57568998 57569441 7 7 406 0 (marked for saving) chromosome 8: 577 45214197 45760270 45788662 10 19 1078 4.9 (marked for saving) chromosome 11: 991 1071711 1379046 1406532 10 31 2424 4.7 (marked for saving) chromosome 6: 745 14621780 14923411 14923749 10 10 745 0 (marked for saving) 679 36568536 37029826 37032291 10 11 786 0.4 (marked for saving) 226 58535424 58821098 59109298 4 8 452 50.1 (marked for saving) 226 51342548 51792902 51793108 4 4 226 0 (marked for saving) chromosome 24: 945 25097245 25215421 25218683 10 11 1100 0.5 (marked for saving) 865 23590221 23627245 23627628 10 10 865 0 (marked for saving) 747 36966497 37540310 37540720 10 10 747 0 (marked for saving) chromosome 10: 536 48388714 48960878 48961231 9 9 536 0 (marked for saving) 498 17770818 17796374 17796598 8 8 498 0 (marked for saving) 177 27439930 27530330 27530760 4 8 314 0 (marked for saving) 177 28104286 28379924 28380350 4 8 314 0 (marked for saving) chromosome 2: 912 11616209 12067392 12107179 10 52 3944 6.9 (marked for saving) chromosome 16: 1122 20627794 21167797 21201570 10 53 4369 5.8 (marked for saving) chromosome 1: 593 59912259 60485294 60485635 10 10 593 0 (marked for saving) 567 53268699 53576765 53579790 9 16 971 0.5 (marked for saving) 533 8072359 8439886 8485042 9 18 1066 7.8 (marked for saving) 529 45190015 45396642 45396977 9 9 529 0 (marked for saving) chromosome 13: 657 47664526 47704241 48238786 10 28 1743 92.9 (marked for saving) 625 46980038 47548869 47549129 10 10 625 0 (marked for saving) 606 29378918 29392940 29393314 10 10 606 0 (marked for saving) 567 33367930 33595969 33631853 9 17 1036 6.2 (marked for saving) chromosome 17: 547 24951175 25339089 25507039 9 34 2044 29.2 (marked for saving) 535 47910283 47947329 47955828 9 16 922 1.4 (marked for saving) 476 54539463 55113439 55113750 8 8 476 0 (marked for saving) 456 54254739 54280862 54281137 8 8 456 0 (marked for saving) chromosome 19: 1535 13599396 13886701 13954141 10 80 6991 11.7 (marked for saving) chromosome 9: 1322 1117332 1312491 1619897 10 83 6775 53.4 (marked for saving) chromosome 14: 622 16068213 16242049 16242681 9 9 622 0.1 (marked for saving) 595 26962501 27097800 27400882 10 29 1704 52.7 (marked for saving) 591 1 49140 49418 10 10 591 0 (marked for saving) 575 3117585 3164823 3480808 9 17 1054 54.9 (marked for saving) 567 923197 1304194 1304535 9 9 567 0 (marked for saving) 296 67353045 67858278 67926438 5 10 591 11.8 (marked for saving) 296 66142249 66427862 66428236 5 5 296 0 (marked for saving) chromosome 12: 1372 34110405 34124418 34685287 11 94 9463 97.5 (marked for saving) chromosome 23: 1263 35192370 35634565 35764982 10 114 9818 22.6 (marked for saving) chromosome 3: 2131 22869841 22929828 23046057 10 120 12288 20.2 (marked for saving) 1145 24143909 24709922 24717334 10 22 2330 1.2 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 3 2131 22869841 22929828 23046057 10 120 12288 20.2 (saved) 19 1535 13599396 13886701 13954141 10 80 6991 11.7 (saved) 12 1372 34110405 34124418 34685287 11 94 9463 97.5 (saved) 9 1322 1117332 1312491 1619897 10 83 6775 53.4 (saved) 23 1263 35192370 35634565 35764982 10 114 9818 22.6 (saved) 3 1145 24143909 24709922 24717334 10 22 2330 1.2 (saved) 16 1122 20627794 21167797 21201570 10 53 4369 5.8 (saved) 11 991 1071711 1379046 1406532 10 31 2424 4.7 (saved) 24 945 25097245 25215421 25218683 10 11 1100 0.5 (saved) 2 912 11616209 12067392 12107179 10 52 3944 6.9 (saved) 24 865 23590221 23627245 23627628 10 10 865 0 (saved) 5 778 74816723 75390636 75391022 10 10 778 0 (saved) 20 772 23159443 23233888 23234193 10 10 772 0 (saved) 24 747 36966497 37540310 37540720 10 10 747 0 (saved) 6 745 14621780 14923411 14923749 10 10 745 0 (saved) 6 679 36568536 37029826 37032291 10 11 786 0.4 (saved) 13 657 47664526 47704241 48238786 10 28 1743 92.9 (saved) 13 625 46980038 47548869 47549129 10 10 625 0 (saved) 14 622 16068213 16242049 16242681 9 9 622 0.1 (saved) 7 618 49059924 49632001 49632249 10 10 618 0 (saved) 13 606 29378918 29392940 29393314 10 10 606 0 21 599 45841423 46415526 46415930 10 10 599 0 14 595 26962501 27097800 27400882 10 29 1704 52.7 1 593 59912259 60485294 60485635 10 10 593 0 14 591 1 49140 49418 10 10 591 0 8 577 45214197 45760270 45788662 10 19 1078 4.9 14 575 3117585 3164823 3480808 9 17 1054 54.9 1 567 53268699 53576765 53579790 9 16 971 0.5 13 567 33367930 33595969 33631853 9 17 1036 6.2 14 567 923197 1304194 1304535 9 9 567 0 17 547 24951175 25339089 25507039 9 34 2044 29.2 10 536 48388714 48960878 48961231 9 9 536 0 17 535 47910283 47947329 47955828 9 16 922 1.4 1 533 8072359 8439886 8485042 9 18 1066 7.8 1 529 45190015 45396642 45396977 9 9 529 0 10 498 17770818 17796374 17796598 8 8 498 0 17 476 54539463 55113439 55113750 8 8 476 0 17 456 54254739 54280862 54281137 8 8 456 0 20 406 57455743 57568998 57569441 7 7 406 0 Zv6_NA174 396 1 50650 50889 7 7 396 0 14 296 67353045 67858278 67926438 5 10 591 11.8 14 296 66142249 66427862 66428236 5 5 296 0 5 291 26206571 26499580 26499795 5 5 291 0 21 289 11504859 11536107 11536358 5 5 289 0 7 230 2043076 2456949 2457119 4 4 230 0 6 226 58535424 58821098 59109298 4 8 452 50.1 6 226 51342548 51792902 51793108 4 4 226 0 7 221 48430080 48708890 48709045 4 4 221 0 10 177 27439930 27530330 27530760 4 8 314 0 10 177 28104286 28379924 28380350 4 8 314 0 global files summary: Danio_rerio.glob01.3.minQN4.fac2.01.blastresult Danio_rerio.glob02.19.minQN4.fac2.01.blastresult Danio_rerio.glob03.12.minQN4.fac2.01.blastresult Danio_rerio.glob04.9.minQN4.fac2.01.blastresult Danio_rerio.glob05.23.minQN4.fac2.01.blastresult Danio_rerio.glob06.3.minQN4.fac2.02.blastresult Danio_rerio.glob07.16.minQN4.fac2.01.blastresult Danio_rerio.glob08.11.minQN4.fac2.01.blastresult Danio_rerio.glob09.24.minQN4.fac2.01.blastresult Danio_rerio.glob10.2.minQN4.fac2.01.blastresult Danio_rerio.glob11.24.minQN4.fac2.02.blastresult Danio_rerio.glob12.5.minQN4.fac2.01.blastresult Danio_rerio.glob13.20.minQN4.fac2.01.blastresult Danio_rerio.glob14.24.minQN4.fac2.03.blastresult Danio_rerio.glob15.6.minQN4.fac2.01.blastresult Danio_rerio.glob16.6.minQN4.fac2.02.blastresult Danio_rerio.glob17.13.minQN4.fac2.01.blastresult Danio_rerio.glob18.13.minQN4.fac2.02.blastresult Danio_rerio.glob19.14.minQN4.fac2.01.blastresult Danio_rerio.glob20.7.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ....chromosome Zv6_NA174: 225 1 50638 50889 4 4 225 0 (marked for saving) chromosome 21: 519 45251235 46415550 46415786 9 9 519 0 (marked for saving) chromosome 8: 335 44938097 45760330 45788611 6 11 610 2.4 (marked for saving) chromosome 7: 478 48470032 48708890 49632237 8 9 534 79.1 (marked for saving) chromosome 5: 648 74227931 75390666 75391022 9 9 648 0 (marked for saving) chromosome 20: 647 23208855 23233879 23234205 9 9 647 0 (marked for saving) 347 56929375 57569211 57569441 6 6 347 0 (marked for saving) chromosome 24: 854 24876139 25215421 25218683 9 10 954 0.2 (marked for saving) 731 23312627 23627242 23627553 9 9 731 0 (marked for saving) 614 37349231 37540319 37540693 9 9 614 0 (marked for saving) chromosome 6: 797 36561689 37029814 37032288 9 10 933 0.2 (marked for saving) 594 14042449 14923423 14923725 9 9 594 0 (marked for saving) chromosome 10: 363 16638569 17796365 17796601 6 6 363 0 (marked for saving) 288 47797963 48960917 48961279 5 5 288 0 (marked for saving) chromosome 11: 1574 383274 1362989 1521780 11 36 3629 13.6 (marked for saving) chromosome 1: 541 59321441 60485345 60485632 9 9 541 0 (marked for saving) 472 53003219 53576777 53579829 8 13 758 0.2 (marked for saving) 467 7702209 8439883 8485096 8 16 934 3.8 (marked for saving) 406 45314007 45396729 45397001 7 7 406 0 (marked for saving) chromosome 17: 458 47922697 47947332 47955498 8 12 685 0.7 (marked for saving) 423 25100089 25339080 25507111 7 26 1548 14.4 (marked for saving) 415 54095069 54280853 55113762 7 11 650 71.3 (marked for saving) chromosome 2: 1030 11160786 12067416 12092957 9 50 4362 2.1 (marked for saving) chromosome 13: 538 28421064 29392940 29393239 9 9 538 0 (marked for saving) 487 47171540 47548866 48238732 8 31 1803 59.1 (marked for saving) 429 33391632 33595969 33631847 7 13 773 3 (marked for saving) chromosome 16: 1152 20922109 20974639 21201168 11 51 4366 19.4 (marked for saving) chromosome 14: 854 26276337 27097806 27436735 10 27 1833 29 (marked for saving) 543 3447895 3480590 4504140 9 11 649 87.7 (marked for saving) 523 1 49143 49502 9 9 523 0 (marked for saving) 451 15127563 16241926 16242510 7 7 451 0 (marked for saving) 414 2275261 3164835 3165098 7 7 414 0 (marked for saving) 410 274199 1304194 1304547 7 7 410 0 (marked for saving) chromosome 12: 903 33876645 34135896 34673873 9 76 6646 46.1 (marked for saving) chromosome 9: 1493 595069 651975 1605720 11 81 7035 81.7 (marked for saving) chromosome 19: 1522 13314620 13745903 14343697 12 75 6340 51.2 (marked for saving) chromosome 23: 2558 35390122 35580664 35921769 13 119 11639 29.2 (marked for saving) chromosome 3: 1450 21903240 21911303 23046123 11 109 9622 97.2 (marked for saving) 912 24400192 24709898 24717334 9 19 1833 0.6 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 23 2558 35390122 35580664 35921769 13 119 11639 29.2 (saved) 11 1574 383274 1362989 1521780 11 36 3629 13.6 (saved) 19 1522 13314620 13745903 14343697 12 75 6340 51.2 (saved) 9 1493 595069 651975 1605720 11 81 7035 81.7 (saved) 3 1450 21903240 21911303 23046123 11 109 9622 97.2 (saved) 16 1152 20922109 20974639 21201168 11 51 4366 19.4 (saved) 2 1030 11160786 12067416 12092957 9 50 4362 2.1 (saved) 3 912 24400192 24709898 24717334 9 19 1833 0.6 (saved) 12 903 33876645 34135896 34673873 9 76 6646 46.1 (saved) 24 854 24876139 25215421 25218683 9 10 954 0.2 (saved) 14 854 26276337 27097806 27436735 10 27 1833 29 (saved) 6 797 36561689 37029814 37032288 9 10 933 0.2 (saved) 24 731 23312627 23627242 23627553 9 9 731 0 (saved) 5 648 74227931 75390666 75391022 9 9 648 0 (saved) 20 647 23208855 23233879 23234205 9 9 647 0 (saved) 24 614 37349231 37540319 37540693 9 9 614 0 (saved) 6 594 14042449 14923423 14923725 9 9 594 0 (saved) 14 543 3447895 3480590 4504140 9 11 649 87.7 (saved) 1 541 59321441 60485345 60485632 9 9 541 0 (saved) 13 538 28421064 29392940 29393239 9 9 538 0 (saved) 14 523 1 49143 49502 9 9 523 0 21 519 45251235 46415550 46415786 9 9 519 0 13 487 47171540 47548866 48238732 8 31 1803 59.1 7 478 48470032 48708890 49632237 8 9 534 79.1 1 472 53003219 53576777 53579829 8 13 758 0.2 1 467 7702209 8439883 8485096 8 16 934 3.8 17 458 47922697 47947332 47955498 8 12 685 0.7 14 451 15127563 16241926 16242510 7 7 451 0 13 429 33391632 33595969 33631847 7 13 773 3 17 423 25100089 25339080 25507111 7 26 1548 14.4 17 415 54095069 54280853 55113762 7 11 650 71.3 14 414 2275261 3164835 3165098 7 7 414 0 14 410 274199 1304194 1304547 7 7 410 0 1 406 45314007 45396729 45397001 7 7 406 0 10 363 16638569 17796365 17796601 6 6 363 0 20 347 56929375 57569211 57569441 6 6 347 0 8 335 44938097 45760330 45788611 6 11 610 2.4 10 288 47797963 48960917 48961279 5 5 288 0 Zv6_NA174 225 1 50638 50889 4 4 225 0 global files summary: Danio_rerio.glob01.23.minQN4.fac2.01.blastresult Danio_rerio.glob02.11.minQN4.fac2.01.blastresult Danio_rerio.glob03.19.minQN4.fac2.01.blastresult Danio_rerio.glob04.9.minQN4.fac2.01.blastresult Danio_rerio.glob05.3.minQN4.fac2.01.blastresult Danio_rerio.glob06.16.minQN4.fac2.01.blastresult Danio_rerio.glob07.2.minQN4.fac2.01.blastresult Danio_rerio.glob08.3.minQN4.fac2.02.blastresult Danio_rerio.glob09.12.minQN4.fac2.01.blastresult Danio_rerio.glob10.24.minQN4.fac2.01.blastresult Danio_rerio.glob11.14.minQN4.fac2.01.blastresult Danio_rerio.glob12.6.minQN4.fac2.01.blastresult Danio_rerio.glob13.24.minQN4.fac2.02.blastresult Danio_rerio.glob14.5.minQN4.fac2.01.blastresult Danio_rerio.glob15.20.minQN4.fac2.01.blastresult Danio_rerio.glob16.24.minQN4.fac2.03.blastresult Danio_rerio.glob17.6.minQN4.fac2.02.blastresult Danio_rerio.glob18.14.minQN4.fac2.02.blastresult Danio_rerio.glob19.1.minQN4.fac2.01.blastresult Danio_rerio.glob20.13.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...chromosome 7: 541 49110235 49631995 49632252 9 9 541 0 (marked for saving) chromosome 8: 457 44973644 45760315 45788629 8 14 797 3.4 (marked for saving) chromosome 21: 595 45603775 46415523 46415873 10 10 595 0 (marked for saving) 403 10932967 11536137 11536358 7 7 403 0 (marked for saving) chromosome 20: 719 22463534 23233897 23234136 10 10 719 0 (marked for saving) 407 56755181 57568971 57569501 7 7 407 0 (marked for saving) chromosome 5: 733 74575775 75390666 75391022 10 10 733 0 (marked for saving) 407 25745546 26499571 26499786 7 7 407 0 (marked for saving) chromosome 10: 366 17274705 17796365 17796637 6 6 366 0 (marked for saving) 295 48149826 48960926 48961297 5 5 295 0 (marked for saving) chromosome 11: 971 592459 1379031 1406535 10 30 2394 3.3 (marked for saving) chromosome 24: 899 24809807 25215421 25218746 10 11 990 0.4 (marked for saving) 802 23207546 23627260 23627610 10 10 802 0 (marked for saving) 698 36726878 37540304 37540645 10 10 698 0 (marked for saving) chromosome 1: 616 59670557 60485267 60485617 10 10 616 0 (marked for saving) 480 53416439 53576618 53579739 8 12 721 0.3 (marked for saving) 478 7778501 8439883 8485042 8 16 956 5.5 (marked for saving) 402 44781353 45396759 45397007 7 7 402 0 (marked for saving) chromosome 16: 1089 20389652 21167839 21201078 10 54 4536 4 (marked for saving) chromosome 17: 524 47163493 47947344 47955537 9 16 916 1 (marked for saving) 471 54302320 55113418 55113762 8 8 471 0 (marked for saving) 425 25180309 25339122 25507066 7 24 1438 20.5 (marked for saving) 413 54269704 54280787 54281218 7 7 413 0 (marked for saving) chromosome 6: 680 14553205 14923405 14923755 10 10 680 0 (marked for saving) 660 36825856 37029844 37032258 9 10 777 0.2 (marked for saving) 336 58295338 58821077 59109298 6 12 672 35.3 (marked for saving) 336 51266590 51792881 51793108 6 6 336 0 (marked for saving) chromosome 2: 1432 12034993 12067413 12108344 10 58 5392 5 (marked for saving) chromosome 13: 618 28961004 29392949 29393317 10 10 618 0 (marked for saving) 577 47425737 47548839 48238780 9 35 2127 84.6 (marked for saving) 543 33311163 33595969 33631844 9 15 879 4.3 (marked for saving) chromosome 14: 599 27091666 27097812 27400807 10 28 1660 37.1 (marked for saving) 563 1137484 1304179 1304718 9 9 563 0 (marked for saving) 548 16309 49152 49601 9 9 548 0 (marked for saving) 541 3163753 3164835 3480847 9 14 835 38.7 (marked for saving) 509 15639373 16242010 16242678 8 8 509 0 (marked for saving) chromosome 19: 1548 13327835 13885840 13954198 10 76 6550 8.3 (marked for saving) chromosome 12: 942 33859126 34135896 34673873 10 84 6744 65.9 (marked for saving) chromosome 9: 1985 1553311 1553343 2354366 11 84 7881 98.2 (marked for saving) 421 525907 1312503 1312793 7 7 421 0 (marked for saving) chromosome 23: 1306 34950200 35634616 35764976 10 117 9709 15.9 (marked for saving) chromosome 3: 1446 22848565 22929834 23057956 10 117 9994 15.7 (marked for saving) 872 23904508 24709958 24717334 10 21 1773 0.9 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 9 1985 1553311 1553343 2354366 11 84 7881 98.2 (saved) 19 1548 13327835 13885840 13954198 10 76 6550 8.3 (saved) 3 1446 22848565 22929834 23057956 10 117 9994 15.7 (saved) 2 1432 12034993 12067413 12108344 10 58 5392 5 (saved) 23 1306 34950200 35634616 35764976 10 117 9709 15.9 (saved) 16 1089 20389652 21167839 21201078 10 54 4536 4 (saved) 11 971 592459 1379031 1406535 10 30 2394 3.3 (saved) 12 942 33859126 34135896 34673873 10 84 6744 65.9 (saved) 24 899 24809807 25215421 25218746 10 11 990 0.4 (saved) 3 872 23904508 24709958 24717334 10 21 1773 0.9 (saved) 24 802 23207546 23627260 23627610 10 10 802 0 (saved) 5 733 74575775 75390666 75391022 10 10 733 0 (saved) 20 719 22463534 23233897 23234136 10 10 719 0 (saved) 24 698 36726878 37540304 37540645 10 10 698 0 (saved) 6 680 14553205 14923405 14923755 10 10 680 0 (saved) 6 660 36825856 37029844 37032258 9 10 777 0.2 (saved) 13 618 28961004 29392949 29393317 10 10 618 0 (saved) 1 616 59670557 60485267 60485617 10 10 616 0 (saved) 14 599 27091666 27097812 27400807 10 28 1660 37.1 (saved) 21 595 45603775 46415523 46415873 10 10 595 0 (saved) 13 577 47425737 47548839 48238780 9 35 2127 84.6 14 563 1137484 1304179 1304718 9 9 563 0 14 548 16309 49152 49601 9 9 548 0 13 543 33311163 33595969 33631844 9 15 879 4.3 7 541 49110235 49631995 49632252 9 9 541 0 14 541 3163753 3164835 3480847 9 14 835 38.7 17 524 47163493 47947344 47955537 9 16 916 1 14 509 15639373 16242010 16242678 8 8 509 0 1 480 53416439 53576618 53579739 8 12 721 0.3 1 478 7778501 8439883 8485042 8 16 956 5.5 17 471 54302320 55113418 55113762 8 8 471 0 8 457 44973644 45760315 45788629 8 14 797 3.4 17 425 25180309 25339122 25507066 7 24 1438 20.5 9 421 525907 1312503 1312793 7 7 421 0 17 413 54269704 54280787 54281218 7 7 413 0 20 407 56755181 57568971 57569501 7 7 407 0 5 407 25745546 26499571 26499786 7 7 407 0 21 403 10932967 11536137 11536358 7 7 403 0 1 402 44781353 45396759 45397007 7 7 402 0 10 366 17274705 17796365 17796637 6 6 366 0 6 336 58295338 58821077 59109298 6 12 672 35.3 6 336 51266590 51792881 51793108 6 6 336 0 10 295 48149826 48960926 48961297 5 5 295 0 global files summary: Danio_rerio.glob01.9.minQN4.fac2.01.blastresult Danio_rerio.glob02.19.minQN4.fac2.01.blastresult Danio_rerio.glob03.3.minQN4.fac2.01.blastresult Danio_rerio.glob04.2.minQN4.fac2.01.blastresult Danio_rerio.glob05.23.minQN4.fac2.01.blastresult Danio_rerio.glob06.16.minQN4.fac2.01.blastresult Danio_rerio.glob07.11.minQN4.fac2.01.blastresult Danio_rerio.glob08.12.minQN4.fac2.01.blastresult Danio_rerio.glob09.24.minQN4.fac2.01.blastresult Danio_rerio.glob10.3.minQN4.fac2.02.blastresult Danio_rerio.glob11.24.minQN4.fac2.02.blastresult Danio_rerio.glob12.5.minQN4.fac2.01.blastresult Danio_rerio.glob13.20.minQN4.fac2.01.blastresult Danio_rerio.glob14.24.minQN4.fac2.03.blastresult Danio_rerio.glob15.6.minQN4.fac2.01.blastresult Danio_rerio.glob16.6.minQN4.fac2.02.blastresult Danio_rerio.glob17.13.minQN4.fac2.01.blastresult Danio_rerio.glob18.1.minQN4.fac2.01.blastresult Danio_rerio.glob19.14.minQN4.fac2.01.blastresult Danio_rerio.glob20.21.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .....chromosome NT_113886: 659 1 40219 40713 10 10 659 0 (marked for saving) .chromosome 3: 457 20608685 21422182 22398802 5 5 457 49.1 (marked for saving) ..chromosome 9: 539 132473639 134452485 134452868 9 9 539 0 (marked for saving) chromosome 1: 600 90944887 90952675 92885802 8 8 600 97.3 (marked for saving) chromosome 20: 624 21285352 21324603 21441238 10 18 1102 5.8 (marked for saving) chromosome 14: 673 34965582 36056669 36120520 11 18 1094 3.2 (marked for saving) chromosome 8: 696 23019259 23594721 23616508 11 21 1297 1 (marked for saving) 246 74331922 74725761 74726537 4 4 246 0 (marked for saving) chromosome 13: 1026 26521400 27265651 27437285 12 26 2072 8.6 (marked for saving) chromosome 5: 744 172188743 172592541 174089174 12 22 1327 75.3 (marked for saving) 565 169022030 170669065 170670084 9 9 565 0 (marked for saving) chromosome 4: 929 53059816 54662430 54662831 12 12 929 0 (marked for saving) 778 496351 1386681 1387397 11 11 778 0 (marked for saving) 730 3474451 4915322 4915714 12 12 730 0 (marked for saving) 638 12825685 13152721 13153422 10 10 638 0 (marked for saving) chromosome 10: 781 124480301 124886389 126126767 11 29 1936 62.4 (marked for saving) 720 101141924 101284512 102977529 11 29 1779 85.2 (marked for saving) chromosome 12: 1505 50896782 52618958 52735229 12 114 9808 5.8 (marked for saving) chromosome 17: 1882 43246767 43594830 44160795 13 129 11885 28.5 (marked for saving) chromosome 2: 1842 174966623 176653084 176763113 12 117 10243 5.5 (marked for saving) 870 234756944 236739230 236739823 12 12 870 0 (marked for saving) 665 72698669 74578637 74596638 11 20 1171 0.9 (marked for saving) 627 117965789 119316939 119317319 10 10 627 0 (marked for saving) chromosome 7: 6335 26413769 26676247 27668932 17 166 20326 49.9 (marked for saving) 894 148674701 150476696 150477331 12 12 894 0 (marked for saving) 695 154511777 154947814 156492098 11 15 917 77.7 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 7 6335 26413769 26676247 27668932 17 166 20326 49.9 (saved) 17 1882 43246767 43594830 44160795 13 129 11885 28.5 (saved) 2 1842 174966623 176653084 176763113 12 117 10243 5.5 (saved) 12 1505 50896782 52618958 52735229 12 114 9808 5.8 (saved) 13 1026 26521400 27265651 27437285 12 26 2072 8.6 (saved) 4 929 53059816 54662430 54662831 12 12 929 0 (saved) 7 894 148674701 150476696 150477331 12 12 894 0 (saved) 2 870 234756944 236739230 236739823 12 12 870 0 (saved) 10 781 124480301 124886389 126126767 11 29 1936 62.4 (saved) 4 778 496351 1386681 1387397 11 11 778 0 (saved) 5 744 172188743 172592541 174089174 12 22 1327 75.3 (saved) 4 730 3474451 4915322 4915714 12 12 730 0 (saved) 10 720 101141924 101284512 102977529 11 29 1779 85.2 (saved) 8 696 23019259 23594721 23616508 11 21 1297 1 (saved) 7 695 154511777 154947814 156492098 11 15 917 77.7 (saved) 14 673 34965582 36056669 36120520 11 18 1094 3.2 (saved) 2 665 72698669 74578637 74596638 11 20 1171 0.9 (saved) NT_113886 659 1 40219 40713 10 10 659 0 (saved) 4 638 12825685 13152721 13153422 10 10 638 0 (saved) 2 627 117965789 119316939 119317319 10 10 627 0 (saved) 20 624 21285352 21324603 21441238 10 18 1102 5.8 1 600 90944887 90952675 92885802 8 8 600 97.3 5 565 169022030 170669065 170670084 9 9 565 0 9 539 132473639 134452485 134452868 9 9 539 0 3 457 20608685 21422182 22398802 5 5 457 49.1 8 246 74331922 74725761 74726537 4 4 246 0 global files summary: Homo_sapiens.glob01.7.minQN4.fac2.01.blastresult Homo_sapiens.glob02.17.minQN4.fac2.01.blastresult Homo_sapiens.glob03.2.minQN4.fac2.01.blastresult Homo_sapiens.glob04.12.minQN4.fac2.01.blastresult Homo_sapiens.glob05.13.minQN4.fac2.01.blastresult Homo_sapiens.glob06.4.minQN4.fac2.01.blastresult Homo_sapiens.glob07.7.minQN4.fac2.02.blastresult Homo_sapiens.glob08.2.minQN4.fac2.02.blastresult Homo_sapiens.glob09.10.minQN4.fac2.01.blastresult Homo_sapiens.glob10.4.minQN4.fac2.02.blastresult Homo_sapiens.glob11.5.minQN4.fac2.01.blastresult Homo_sapiens.glob12.4.minQN4.fac2.03.blastresult Homo_sapiens.glob13.10.minQN4.fac2.02.blastresult Homo_sapiens.glob14.8.minQN4.fac2.01.blastresult Homo_sapiens.glob15.7.minQN4.fac2.03.blastresult Homo_sapiens.glob16.14.minQN4.fac2.01.blastresult Homo_sapiens.glob17.2.minQN4.fac2.03.blastresult Homo_sapiens.glob18.NT_113886.minQN4.fac2.01.blastresult Homo_sapiens.glob19.4.minQN4.fac2.04.blastresult Homo_sapiens.glob20.2.minQN4.fac2.04.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .chromosome 3: 242 20850498 21422209 21422928 4 4 242 0.1 (marked for saving) chromosome X: 251 42580281 43152184 43152729 4 4 251 0 (marked for saving) chromosome 1: 227 90378582 90952675 90952881 4 4 227 0 (marked for saving) .chromosome NT_113886: 583 1 40264 40740 9 9 583 0 (marked for saving) chromosome 9: 294 133879311 134452329 134452760 5 5 294 0 (marked for saving) chromosome 20: 486 20867890 21324573 21441178 8 12 728 20.2 (marked for saving) chromosome 14: 553 36013854 36056654 36120562 9 15 904 11.1 (marked for saving) chromosome 8: 567 23048699 23594808 23616541 9 18 1094 3.7 (marked for saving) chromosome 13: 886 26863399 27265651 27437291 10 24 1900 29.8 (marked for saving) chromosome 5: 600 173514269 174088761 174089081 10 10 600 0 (marked for saving) 519 172329357 172592541 172592861 9 9 519 0 (marked for saving) 500 170393809 170669719 170670081 8 8 500 0 (marked for saving) chromosome 4: 790 54498416 54662421 54662795 10 10 790 0 (marked for saving) 609 4726360 4915325 4915669 10 10 609 0 (marked for saving) 574 12695756 13152874 13153401 9 9 574 0 (marked for saving) 553 981808 1386993 1387367 8 8 553 0 (marked for saving) chromosome 10: 629 125601708 126126018 126126761 9 9 629 0.1 (marked for saving) 595 124425424 124886407 124899473 9 17 1101 2.2 (marked for saving) 573 102864052 102883873 102977598 9 17 1051 16.2 (marked for saving) 540 101135576 101284518 101285015 9 9 540 0 (marked for saving) chromosome 12: 1262 52608349 52619108 52735220 10 96 8358 20.1 (marked for saving) chromosome 17: 4369 43675443 43961824 44249439 14 123 15542 50 (marked for saving) chromosome 2: 1448 176193875 176655149 176763176 10 97 8374 18.7 (marked for saving) 744 236167103 236739380 236739814 10 10 744 0 (marked for saving) 556 119194431 119316831 119317280 9 9 556 0 (marked for saving) 553 74032603 74578604 74596710 9 16 959 3.1 (marked for saving) chromosome 7: 1648 26754659 27100587 27251451 10 121 11357 26.2 (marked for saving) 749 150379519 150476696 150477322 10 10 749 0.1 (marked for saving) 516 154578479 154947814 154948065 8 8 516 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 17 4369 43675443 43961824 44249439 14 123 15542 50 (saved) 7 1648 26754659 27100587 27251451 10 121 11357 26.2 (saved) 2 1448 176193875 176655149 176763176 10 97 8374 18.7 (saved) 12 1262 52608349 52619108 52735220 10 96 8358 20.1 (saved) 13 886 26863399 27265651 27437291 10 24 1900 29.8 (saved) 4 790 54498416 54662421 54662795 10 10 790 0 (saved) 7 749 150379519 150476696 150477322 10 10 749 0.1 (saved) 2 744 236167103 236739380 236739814 10 10 744 0 (saved) 10 629 125601708 126126018 126126761 9 9 629 0.1 (saved) 4 609 4726360 4915325 4915669 10 10 609 0 (saved) 5 600 173514269 174088761 174089081 10 10 600 0 (saved) 10 595 124425424 124886407 124899473 9 17 1101 2.2 (saved) NT_113886 583 1 40264 40740 9 9 583 0 (saved) 4 574 12695756 13152874 13153401 9 9 574 0 (saved) 10 573 102864052 102883873 102977598 9 17 1051 16.2 (saved) 8 567 23048699 23594808 23616541 9 18 1094 3.7 (saved) 2 556 119194431 119316831 119317280 9 9 556 0 (saved) 14 553 36013854 36056654 36120562 9 15 904 11.1 (saved) 4 553 981808 1386993 1387367 8 8 553 0 (saved) 2 553 74032603 74578604 74596710 9 16 959 3.1 (saved) 10 540 101135576 101284518 101285015 9 9 540 0 5 519 172329357 172592541 172592861 9 9 519 0 7 516 154578479 154947814 154948065 8 8 516 0 5 500 170393809 170669719 170670081 8 8 500 0 20 486 20867890 21324573 21441178 8 12 728 20.2 9 294 133879311 134452329 134452760 5 5 294 0 X 251 42580281 43152184 43152729 4 4 251 0 3 242 20850498 21422209 21422928 4 4 242 0.1 1 227 90378582 90952675 90952881 4 4 227 0 global files summary: Homo_sapiens.glob01.17.minQN4.fac2.01.blastresult Homo_sapiens.glob02.7.minQN4.fac2.01.blastresult Homo_sapiens.glob03.2.minQN4.fac2.01.blastresult Homo_sapiens.glob04.12.minQN4.fac2.01.blastresult Homo_sapiens.glob05.13.minQN4.fac2.01.blastresult Homo_sapiens.glob06.4.minQN4.fac2.01.blastresult Homo_sapiens.glob07.7.minQN4.fac2.02.blastresult Homo_sapiens.glob08.2.minQN4.fac2.02.blastresult Homo_sapiens.glob09.10.minQN4.fac2.01.blastresult Homo_sapiens.glob10.4.minQN4.fac2.02.blastresult Homo_sapiens.glob11.5.minQN4.fac2.01.blastresult Homo_sapiens.glob12.10.minQN4.fac2.02.blastresult Homo_sapiens.glob13.NT_113886.minQN4.fac2.01.blastresult Homo_sapiens.glob14.4.minQN4.fac2.03.blastresult Homo_sapiens.glob15.10.minQN4.fac2.03.blastresult Homo_sapiens.glob16.8.minQN4.fac2.01.blastresult Homo_sapiens.glob17.2.minQN4.fac2.03.blastresult Homo_sapiens.glob18.14.minQN4.fac2.01.blastresult Homo_sapiens.glob19.4.minQN4.fac2.04.blastresult Homo_sapiens.glob20.2.minQN4.fac2.04.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .....chromosome NT_113886: 444 1 40276 40734 7 7 444 0 (marked for saving) .chromosome 14: 483 35269467 36056666 36120508 8 11 665 5.4 (marked for saving) ..chromosome 20: 362 20380129 21324846 21441142 6 10 596 9.9 (marked for saving) chromosome 8: 428 22510078 23594805 23616499 7 14 826 1.8 (marked for saving) ....chromosome 13: 886 26768359 27265687 27437126 10 20 1597 14.6 (marked for saving) .chromosome 5: 480 173815214 174088779 174089072 8 8 480 0 (marked for saving) 408 172088350 172592547 172592930 7 7 408 0 (marked for saving) 308 169608900 170669731 170670009 5 5 308 0 (marked for saving) .chromosome 10: 453 125952919 126126216 126126728 7 7 453 0 (marked for saving) 436 123899351 124886452 124899482 7 13 798 1.1 (marked for saving) 435 102161867 102883660 102977514 7 12 724 8 (marked for saving) 405 100621691 101284629 101285012 7 7 405 0 (marked for saving) chromosome 4: 653 54173401 54662448 54662744 9 9 653 0 (marked for saving) 526 4811927 4915319 4915627 9 9 526 0 (marked for saving) 440 395589 1386993 1387388 7 7 440 0 (marked for saving) 363 12326119 13152796 13153479 6 6 363 0 (marked for saving) chromosome 17: 1423 43275734 43490986 44160948 11 101 8830 57.4 (marked for saving) chromosome 12: 5029 51860307 52391998 52975299 14 116 14705 49.9 (marked for saving) chromosome 2: 1650 176648839 176666159 177804673 11 93 8314 97.5 (marked for saving) 604 235578073 236739392 236739814 9 9 604 0 (marked for saving) 478 73853759 74578715 74596638 8 14 816 1.5 (marked for saving) 425 118559701 119316939 119317268 7 7 425 0 (marked for saving) chromosome 7: 1600 26175259 26191449 27335677 12 119 10481 98 (marked for saving) 626 149651869 150476705 150477328 9 9 626 0 (marked for saving) 432 154569931 154947778 154948077 7 7 432 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 12 5029 51860307 52391998 52975299 14 116 14705 49.9 (saved) 2 1650 176648839 176666159 177804673 11 93 8314 97.5 (saved) 7 1600 26175259 26191449 27335677 12 119 10481 98 (saved) 17 1423 43275734 43490986 44160948 11 101 8830 57.4 (saved) 13 886 26768359 27265687 27437126 10 20 1597 14.6 (saved) 4 653 54173401 54662448 54662744 9 9 653 0 (saved) 7 626 149651869 150476705 150477328 9 9 626 0 (saved) 2 604 235578073 236739392 236739814 9 9 604 0 (saved) 4 526 4811927 4915319 4915627 9 9 526 0 (saved) 14 483 35269467 36056666 36120508 8 11 665 5.4 (saved) 5 480 173815214 174088779 174089072 8 8 480 0 (saved) 2 478 73853759 74578715 74596638 8 14 816 1.5 (saved) 10 453 125952919 126126216 126126728 7 7 453 0 (saved) NT_113886 444 1 40276 40734 7 7 444 0 (saved) 4 440 395589 1386993 1387388 7 7 440 0 (saved) 10 436 123899351 124886452 124899482 7 13 798 1.1 (saved) 10 435 102161867 102883660 102977514 7 12 724 8 (saved) 7 432 154569931 154947778 154948077 7 7 432 0 (saved) 8 428 22510078 23594805 23616499 7 14 826 1.8 (saved) 2 425 118559701 119316939 119317268 7 7 425 0 (saved) 5 408 172088350 172592547 172592930 7 7 408 0 10 405 100621691 101284629 101285012 7 7 405 0 4 363 12326119 13152796 13153479 6 6 363 0 20 362 20380129 21324846 21441142 6 10 596 9.9 5 308 169608900 170669731 170670009 5 5 308 0 global files summary: Homo_sapiens.glob01.12.minQN4.fac2.01.blastresult Homo_sapiens.glob02.2.minQN4.fac2.01.blastresult Homo_sapiens.glob03.7.minQN4.fac2.01.blastresult Homo_sapiens.glob04.17.minQN4.fac2.01.blastresult Homo_sapiens.glob05.13.minQN4.fac2.01.blastresult Homo_sapiens.glob06.4.minQN4.fac2.01.blastresult Homo_sapiens.glob07.7.minQN4.fac2.02.blastresult Homo_sapiens.glob08.2.minQN4.fac2.02.blastresult Homo_sapiens.glob09.4.minQN4.fac2.02.blastresult Homo_sapiens.glob10.14.minQN4.fac2.01.blastresult Homo_sapiens.glob11.5.minQN4.fac2.01.blastresult Homo_sapiens.glob12.2.minQN4.fac2.03.blastresult Homo_sapiens.glob13.10.minQN4.fac2.01.blastresult Homo_sapiens.glob14.NT_113886.minQN4.fac2.01.blastresult Homo_sapiens.glob15.4.minQN4.fac2.03.blastresult Homo_sapiens.glob16.10.minQN4.fac2.02.blastresult Homo_sapiens.glob17.10.minQN4.fac2.03.blastresult Homo_sapiens.glob18.7.minQN4.fac2.03.blastresult Homo_sapiens.glob19.8.minQN4.fac2.01.blastresult Homo_sapiens.glob20.2.minQN4.fac2.04.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ....chromosome 3: 232 20827478 21422203 21422829 4 4 232 0 (marked for saving) ..chromosome NT_113886: 445 4078 40207 40719 7 7 445 0 (marked for saving) chromosome 9: 354 133639694 134452380 134452760 6 6 354 0 (marked for saving) chromosome 1: 286 90545147 90952675 90952968 5 5 286 0 (marked for saving) chromosome 20: 434 20627884 21324699 21441118 7 13 788 14.2 (marked for saving) chromosome 8: 553 23244394 23594715 23616523 9 16 967 2.6 (marked for saving) chromosome 14: 573 36052374 36056669 36120835 9 15 933 7.8 (marked for saving) chromosome 13: 817 26625539 27265633 27437126 10 21 1608 21 (marked for saving) chromosome 5: 566 173277756 174088779 174089177 9 9 566 0 (marked for saving) 463 172405278 172592535 172592840 8 8 463 0 (marked for saving) 366 170224083 170669071 170670024 6 6 366 0.1 (marked for saving) chromosome 4: 731 54163966 54662358 54662762 10 10 731 0 (marked for saving) 607 4449028 4915340 4915714 10 10 607 0 (marked for saving) 582 767497 1386687 1387397 9 9 582 0 (marked for saving) 502 12627490 13152781 13153584 8 8 502 0 (marked for saving) chromosome 10: 567 125466319 126126255 126126770 9 9 567 0 (marked for saving) 550 102202957 102883825 102977553 9 13 782 11.4 (marked for saving) 537 101240785 101284512 101285021 9 9 537 0 (marked for saving) 521 124691689 124886275 124899488 8 16 996 1.6 (marked for saving) chromosome 12: 1292 52089711 52619219 52735253 10 97 8305 14.2 (marked for saving) chromosome 17: 1354 43347493 43961923 44160786 10 104 8824 24.3 (marked for saving) chromosome 7: 1553 26751014 27100620 27252566 10 117 10207 18.6 (marked for saving) 700 149762258 150476690 150477331 10 10 700 0 (marked for saving) 439 154813661 154947817 154948077 7 7 439 0 (marked for saving) chromosome 2: 5057 176369993 176502944 176910635 14 115 14416 49.9 (marked for saving) 677 235926809 236739374 236739817 10 10 677 0 (marked for saving) 532 74061755 74578679 74596554 9 13 762 2.1 (marked for saving) 426 118590749 119316903 119317262 7 7 426 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 2 5057 176369993 176502944 176910635 14 115 14416 49.9 (saved) 7 1553 26751014 27100620 27252566 10 117 10207 18.6 (saved) 17 1354 43347493 43961923 44160786 10 104 8824 24.3 (saved) 12 1292 52089711 52619219 52735253 10 97 8305 14.2 (saved) 13 817 26625539 27265633 27437126 10 21 1608 21 (saved) 4 731 54163966 54662358 54662762 10 10 731 0 (saved) 7 700 149762258 150476690 150477331 10 10 700 0 (saved) 2 677 235926809 236739374 236739817 10 10 677 0 (saved) 4 607 4449028 4915340 4915714 10 10 607 0 (saved) 4 582 767497 1386687 1387397 9 9 582 0 (saved) 14 573 36052374 36056669 36120835 9 15 933 7.8 (saved) 10 567 125466319 126126255 126126770 9 9 567 0 (saved) 5 566 173277756 174088779 174089177 9 9 566 0 (saved) 8 553 23244394 23594715 23616523 9 16 967 2.6 (saved) 10 550 102202957 102883825 102977553 9 13 782 11.4 (saved) 10 537 101240785 101284512 101285021 9 9 537 0 (saved) 2 532 74061755 74578679 74596554 9 13 762 2.1 (saved) 10 521 124691689 124886275 124899488 8 16 996 1.6 (saved) 4 502 12627490 13152781 13153584 8 8 502 0 (saved) 5 463 172405278 172592535 172592840 8 8 463 0 (saved) NT_113886 445 4078 40207 40719 7 7 445 0 7 439 154813661 154947817 154948077 7 7 439 0 20 434 20627884 21324699 21441118 7 13 788 14.2 2 426 118590749 119316903 119317262 7 7 426 0 5 366 170224083 170669071 170670024 6 6 366 0.1 9 354 133639694 134452380 134452760 6 6 354 0 1 286 90545147 90952675 90952968 5 5 286 0 3 232 20827478 21422203 21422829 4 4 232 0 global files summary: Homo_sapiens.glob01.2.minQN4.fac2.01.blastresult Homo_sapiens.glob02.7.minQN4.fac2.01.blastresult Homo_sapiens.glob03.17.minQN4.fac2.01.blastresult Homo_sapiens.glob04.12.minQN4.fac2.01.blastresult Homo_sapiens.glob05.13.minQN4.fac2.01.blastresult Homo_sapiens.glob06.4.minQN4.fac2.01.blastresult Homo_sapiens.glob07.7.minQN4.fac2.02.blastresult Homo_sapiens.glob08.2.minQN4.fac2.02.blastresult Homo_sapiens.glob09.4.minQN4.fac2.02.blastresult Homo_sapiens.glob10.4.minQN4.fac2.03.blastresult Homo_sapiens.glob11.14.minQN4.fac2.01.blastresult Homo_sapiens.glob12.10.minQN4.fac2.01.blastresult Homo_sapiens.glob13.5.minQN4.fac2.01.blastresult Homo_sapiens.glob14.8.minQN4.fac2.01.blastresult Homo_sapiens.glob15.10.minQN4.fac2.02.blastresult Homo_sapiens.glob16.10.minQN4.fac2.03.blastresult Homo_sapiens.glob17.2.minQN4.fac2.03.blastresult Homo_sapiens.glob18.10.minQN4.fac2.04.blastresult Homo_sapiens.glob19.4.minQN4.fac2.04.blastresult Homo_sapiens.glob20.5.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .............chromosome scaffold_260: 225 1 332617 332763 4 4 225 0 (marked for saving) chromosome scaffold_1: 225 2441371 4416627 4416821 4 4 225 0 (marked for saving) .chromosome scaffold_83: 226 1 206761 206925 4 4 226 0 (marked for saving) chromosome scaffold_132: 228 1 642132 642335 4 4 228 0 (marked for saving) chromosome scaffold_114: 339 1 860714 860902 6 6 339 0 (marked for saving) chromosome scaffold_160: 170 1 324248 585107 4 7 280 13.1 (marked for saving) chromosome scaffold_27: 575 1 778360 1211594 9 9 575 21.8 (marked for saving) chromosome scaffold_2125: 546 1 20852 21253 9 9 546 0 (marked for saving) chromosome scaffold_338: 227 1 97195 97598 5 10 395 0 (marked for saving) chromosome scaffold_67: 566 1 1142831 1143208 10 10 566 0 (marked for saving) chromosome scaffold_370: 575 1 133439 133669 10 10 575 0 (marked for saving) chromosome scaffold_5: 691 1 1978101 1978418 11 11 691 0 (marked for saving) chromosome scaffold_62: 645 1 947534 947830 11 11 645 0 (marked for saving) chromosome scaffold_59: 674 1 674263 674832 11 11 674 0 (marked for saving) chromosome scaffold_57: 709 1 608847 609050 11 11 709 0 (marked for saving) chromosome scaffold_154: 761 1 654090 654794 11 11 761 0 (marked for saving) chromosome scaffold_26: 744 1 292156 292536 12 12 744 0 (marked for saving) chromosome scaffold_6181: 712 1 505 894 12 12 712 0 (marked for saving) chromosome scaffold_6: 921 728895 2704034 2704369 12 12 921 0 (marked for saving) chromosome scaffold_219: 724 1 476778 477242 12 12 724 0 (marked for saving) chromosome scaffold_107: 867 1 112267 112614 12 12 867 0 (marked for saving) chromosome scaffold_7389: 744 1 2272 2652 12 12 744 0 (marked for saving) chromosome scaffold_3613: 743 1 4981 5370 12 12 743 0 (marked for saving) chromosome scaffold_13: 929 1 1499920 1500249 12 12 929 0 (marked for saving) chromosome scaffold_97: 697 1 562418 562819 12 12 697 0 (marked for saving) chromosome scaffold_4108: 1087 1 5963 6196 12 12 1087 0 (marked for saving) chromosome scaffold_4997: 712 1 662 1051 12 12 712 0 (marked for saving) chromosome scaffold_64: 749 1 814268 814717 12 12 749 0 (marked for saving) chromosome scaffold_116: 743 1 869702 870091 12 12 743 0 (marked for saving) chromosome scaffold_4283: 712 1 1218 1607 12 12 712 0 (marked for saving) chromosome scaffold_659: 750 1 42593 42907 12 12 750 0 (marked for saving) chromosome scaffold_95: 1006 1 213357 213749 12 12 1006 0 (marked for saving) chromosome scaffold_74: 726 1 802626 802865 12 12 726 0 (marked for saving) chromosome scaffold_142: 745 1 745180 745512 12 12 745 0 (marked for saving) chromosome scaffold_3110: 922 1 2081 3817 12 13 1054 0 (marked for saving) chromosome scaffold_3809: 1161 1 3209 5744 12 13 1233 0.1 (marked for saving) chromosome scaffold_120: 644 1 559619 567463 11 18 1040 0.3 (marked for saving) chromosome scaffold_52: 692 1 75118 106463 11 19 1158 1.5 (marked for saving) chromosome scaffold_70: 690 1 620029 697954 11 20 1200 3.9 (marked for saving) chromosome scaffold_23: 663 1 280742 297682 11 21 1237 0.8 (marked for saving) chromosome scaffold_63: 689 1 161498 164207 11 22 1314 0.1 (marked for saving) chromosome scaffold_207: 698 1 497035 499773 11 22 1339 0.1 (marked for saving) chromosome scaffold_4797: 694 1 1241 3790 11 22 1327 0.1 (marked for saving) chromosome scaffold_227: 737 1 294941 302437 12 22 1313 0.3 (marked for saving) chromosome scaffold_352: 529 1 102640 103084 11 22 899 0 (marked for saving) chromosome scaffold_39: 1221 1 578900 598598 12 27 2325 0.9 (marked for saving) chromosome scaffold_76: 725 1 17183 108488 11 31 1935 4.5 (marked for saving) chromosome scaffold_24: 753 1 271438 886791 12 33 1989 30.9 (marked for saving) chromosome scaffold_346: 1638 1 159537 226531 13 35 3327 3.3 (marked for saving) chromosome scaffold_130: 1348 1 627432 666433 13 56 4860 1.9 (marked for saving) chromosome scaffold_48: 1906 1 1047123 1092565 14 73 6569 2.2 (marked for saving) chromosome scaffold_100: 1734 1 339085 380283 12 80 7164 2 (marked for saving) chromosome scaffold_66: 1442 1 126593 194602 12 112 9581 3.4 (marked for saving) chromosome scaffold_12: 2292 403249 2318766 2382351 12 116 11174 3.2 (marked for saving) chromosome scaffold_41: 1818 1 484922 661535 12 117 10641 8.8 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_12 2292 403249 2318766 2382351 12 116 11174 3.2 (saved) scaffold_48 1906 1 1047123 1092565 14 73 6569 2.2 (saved) scaffold_41 1818 1 484922 661535 12 117 10641 8.8 (saved) scaffold_100 1734 1 339085 380283 12 80 7164 2 (saved) scaffold_346 1638 1 159537 226531 13 35 3327 3.3 (saved) scaffold_66 1442 1 126593 194602 12 112 9581 3.4 (saved) scaffold_130 1348 1 627432 666433 13 56 4860 1.9 (saved) scaffold_39 1221 1 578900 598598 12 27 2325 0.9 (saved) scaffold_3809 1161 1 3209 5744 12 13 1233 0.1 (saved) scaffold_4108 1087 1 5963 6196 12 12 1087 0 (saved) scaffold_95 1006 1 213357 213749 12 12 1006 0 (saved) scaffold_13 929 1 1499920 1500249 12 12 929 0 (saved) scaffold_3110 922 1 2081 3817 12 13 1054 0 (saved) scaffold_6 921 728895 2704034 2704369 12 12 921 0 (saved) scaffold_107 867 1 112267 112614 12 12 867 0 (saved) scaffold_154 761 1 654090 654794 11 11 761 0 (saved) scaffold_24 753 1 271438 886791 12 33 1989 30.9 (saved) scaffold_659 750 1 42593 42907 12 12 750 0 (saved) scaffold_64 749 1 814268 814717 12 12 749 0 (saved) scaffold_142 745 1 745180 745512 12 12 745 0 (saved) scaffold_26 744 1 292156 292536 12 12 744 0 scaffold_7389 744 1 2272 2652 12 12 744 0 scaffold_3613 743 1 4981 5370 12 12 743 0 scaffold_116 743 1 869702 870091 12 12 743 0 scaffold_227 737 1 294941 302437 12 22 1313 0.3 scaffold_74 726 1 802626 802865 12 12 726 0 scaffold_76 725 1 17183 108488 11 31 1935 4.5 scaffold_219 724 1 476778 477242 12 12 724 0 scaffold_6181 712 1 505 894 12 12 712 0 scaffold_4997 712 1 662 1051 12 12 712 0 scaffold_4283 712 1 1218 1607 12 12 712 0 scaffold_57 709 1 608847 609050 11 11 709 0 scaffold_207 698 1 497035 499773 11 22 1339 0.1 scaffold_97 697 1 562418 562819 12 12 697 0 scaffold_4797 694 1 1241 3790 11 22 1327 0.1 scaffold_52 692 1 75118 106463 11 19 1158 1.5 scaffold_5 691 1 1978101 1978418 11 11 691 0 scaffold_70 690 1 620029 697954 11 20 1200 3.9 scaffold_63 689 1 161498 164207 11 22 1314 0.1 scaffold_59 674 1 674263 674832 11 11 674 0 scaffold_23 663 1 280742 297682 11 21 1237 0.8 scaffold_62 645 1 947534 947830 11 11 645 0 scaffold_120 644 1 559619 567463 11 18 1040 0.3 scaffold_27 575 1 778360 1211594 9 9 575 21.8 scaffold_370 575 1 133439 133669 10 10 575 0 scaffold_67 566 1 1142831 1143208 10 10 566 0 scaffold_2125 546 1 20852 21253 9 9 546 0 scaffold_352 529 1 102640 103084 11 22 899 0 scaffold_114 339 1 860714 860902 6 6 339 0 scaffold_132 228 1 642132 642335 4 4 228 0 scaffold_338 227 1 97195 97598 5 10 395 0 scaffold_83 226 1 206761 206925 4 4 226 0 scaffold_260 225 1 332617 332763 4 4 225 0 scaffold_1 225 2441371 4416627 4416821 4 4 225 0 scaffold_160 170 1 324248 585107 4 7 280 13.1 global files summary: Takifugu_rubripes.glob01.scaffold_12.minQN4.fac2.01.blastresult Takifugu_rubripes.glob02.scaffold_48.minQN4.fac2.01.blastresult Takifugu_rubripes.glob03.scaffold_41.minQN4.fac2.01.blastresult Takifugu_rubripes.glob04.scaffold_100.minQN4.fac2.01.blastresult Takifugu_rubripes.glob05.scaffold_346.minQN4.fac2.01.blastresult Takifugu_rubripes.glob06.scaffold_66.minQN4.fac2.01.blastresult Takifugu_rubripes.glob07.scaffold_130.minQN4.fac2.01.blastresult Takifugu_rubripes.glob08.scaffold_39.minQN4.fac2.01.blastresult Takifugu_rubripes.glob09.scaffold_3809.minQN4.fac2.01.blastresult Takifugu_rubripes.glob10.scaffold_4108.minQN4.fac2.01.blastresult Takifugu_rubripes.glob11.scaffold_95.minQN4.fac2.01.blastresult Takifugu_rubripes.glob12.scaffold_13.minQN4.fac2.01.blastresult Takifugu_rubripes.glob13.scaffold_3110.minQN4.fac2.01.blastresult Takifugu_rubripes.glob14.scaffold_6.minQN4.fac2.01.blastresult Takifugu_rubripes.glob15.scaffold_107.minQN4.fac2.01.blastresult Takifugu_rubripes.glob16.scaffold_154.minQN4.fac2.01.blastresult Takifugu_rubripes.glob17.scaffold_24.minQN4.fac2.01.blastresult Takifugu_rubripes.glob18.scaffold_659.minQN4.fac2.01.blastresult Takifugu_rubripes.glob19.scaffold_64.minQN4.fac2.01.blastresult Takifugu_rubripes.glob20.scaffold_142.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ......chromosome scaffold_260: 222 1 332566 332763 4 4 222 0 (marked for saving) chromosome scaffold_1: 224 3844634 4416621 4416821 4 4 224 0 (marked for saving) chromosome scaffold_114: 222 288673 860714 860896 4 4 222 0 (marked for saving) chromosome scaffold_132: 225 70133 642132 642368 4 4 225 0 (marked for saving) chromosome scaffold_83: 217 1 206761 206925 4 4 217 0 (marked for saving) .chromosome scaffold_67: 396 570943 1142945 1143229 7 7 396 0 (marked for saving) chromosome scaffold_370: 395 1 133439 133696 7 7 395 0 (marked for saving) chromosome scaffold_59: 495 102432 674413 674817 8 8 495 0 (marked for saving) chromosome scaffold_160: 152 1 324260 324459 4 8 289 0 (marked for saving) chromosome scaffold_5: 567 1406162 1978089 1978397 9 9 567 0 (marked for saving) chromosome scaffold_6181: 541 1 544 861 9 9 541 0 (marked for saving) chromosome scaffold_62: 531 375559 947549 947794 9 9 531 0 (marked for saving) chromosome scaffold_4997: 541 1 701 1018 9 9 541 0 (marked for saving) chromosome scaffold_2125: 535 1 20852 21202 9 9 535 0 (marked for saving) chromosome scaffold_154: 619 82352 653919 654680 9 9 619 0.1 (marked for saving) chromosome scaffold_27: 558 639305 1211202 1211537 9 9 558 0 (marked for saving) chromosome scaffold_4283: 541 1 1251 1568 9 9 541 0 (marked for saving) chromosome scaffold_13: 781 927942 1499920 1500234 10 10 781 0 (marked for saving) chromosome scaffold_97: 573 1 562280 562819 10 10 573 0 (marked for saving) chromosome scaffold_4108: 897 1 5954 6196 10 10 897 0 (marked for saving) chromosome scaffold_26: 602 1 292144 292524 10 10 602 0 (marked for saving) chromosome scaffold_6: 786 2132164 2704064 2704393 10 10 786 0 (marked for saving) chromosome scaffold_219: 588 1 476769 477137 10 10 588 0 (marked for saving) chromosome scaffold_57: 662 36812 608847 609050 10 10 662 0 (marked for saving) chromosome scaffold_107: 747 1 112180 112614 10 10 747 0 (marked for saving) chromosome scaffold_64: 614 242398 814370 814696 10 10 614 0 (marked for saving) chromosome scaffold_3613: 600 1 4981 5256 10 10 600 0 (marked for saving) chromosome scaffold_7389: 602 1 2284 2664 10 10 602 0 (marked for saving) chromosome scaffold_116: 600 297736 869702 869977 10 10 600 0 (marked for saving) chromosome scaffold_659: 616 1 42665 42907 10 10 616 0 (marked for saving) chromosome scaffold_95: 859 1 213384 213737 10 10 859 0 (marked for saving) chromosome scaffold_74: 614 230630 802632 802865 10 10 614 0 (marked for saving) chromosome scaffold_142: 621 173226 745168 745434 10 10 621 0 (marked for saving) chromosome scaffold_3110: 743 1 2165 3853 10 11 870 0.2 (marked for saving) chromosome scaffold_3809: 1034 1 3209 5738 10 11 1149 0.4 (marked for saving) chromosome scaffold_23: 524 1 280835 297700 9 16 924 2.9 (marked for saving) chromosome scaffold_120: 563 1 559805 567517 10 17 951 1.3 (marked for saving) chromosome scaffold_63: 560 1 161549 164213 9 17 1027 0.4 (marked for saving) chromosome scaffold_52: 567 1 75133 106433 9 17 1038 5.4 (marked for saving) chromosome scaffold_227: 594 1 295169 302428 10 17 995 1.2 (marked for saving) chromosome scaffold_70: 561 122845 620041 697834 9 17 1030 13.5 (marked for saving) chromosome scaffold_207: 615 1 497032 499758 10 19 1128 0.4 (marked for saving) chromosome scaffold_4797: 610 1 1244 3793 10 19 1123 0.4 (marked for saving) chromosome scaffold_352: 489 1 102616 103084 10 20 811 0 (marked for saving) chromosome scaffold_39: 1028 24100 578897 598598 10 22 1925 3.4 (marked for saving) chromosome scaffold_346: 1103 1 187165 226465 10 24 2050 6.8 (marked for saving) chromosome scaffold_76: 595 1 17159 108428 9 27 1676 15.8 (marked for saving) chromosome scaffold_24: 610 313485 886417 886824 10 10 610 0 (marked for saving) 541 5753 271444 275683 9 18 1055 0.7 (marked for saving) chromosome scaffold_130: 1328 67777 619602 642315 11 46 4465 3.9 (marked for saving) chromosome scaffold_48: 1167 510987 1056667 1085909 10 51 4247 5 (marked for saving) chromosome scaffold_100: 1291 1 339085 379367 10 65 5573 7 (marked for saving) chromosome scaffold_66: 1223 1 126650 194512 10 95 8207 11.8 (marked for saving) chromosome scaffold_12: 1559 1807346 2318841 2382264 10 97 8659 11 (marked for saving) chromosome scaffold_41: 1836 89157 501893 661547 10 98 9717 27.7 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_41 1836 89157 501893 661547 10 98 9717 27.7 (saved) scaffold_12 1559 1807346 2318841 2382264 10 97 8659 11 (saved) scaffold_130 1328 67777 619602 642315 11 46 4465 3.9 (saved) scaffold_100 1291 1 339085 379367 10 65 5573 7 (saved) scaffold_66 1223 1 126650 194512 10 95 8207 11.8 (saved) scaffold_48 1167 510987 1056667 1085909 10 51 4247 5 (saved) scaffold_346 1103 1 187165 226465 10 24 2050 6.8 (saved) scaffold_3809 1034 1 3209 5738 10 11 1149 0.4 (saved) scaffold_39 1028 24100 578897 598598 10 22 1925 3.4 (saved) scaffold_4108 897 1 5954 6196 10 10 897 0 (saved) scaffold_95 859 1 213384 213737 10 10 859 0 (saved) scaffold_6 786 2132164 2704064 2704393 10 10 786 0 (saved) scaffold_13 781 927942 1499920 1500234 10 10 781 0 (saved) scaffold_107 747 1 112180 112614 10 10 747 0 (saved) scaffold_3110 743 1 2165 3853 10 11 870 0.2 (saved) scaffold_57 662 36812 608847 609050 10 10 662 0 (saved) scaffold_142 621 173226 745168 745434 10 10 621 0 (saved) scaffold_154 619 82352 653919 654680 9 9 619 0.1 (saved) scaffold_659 616 1 42665 42907 10 10 616 0 (saved) scaffold_207 615 1 497032 499758 10 19 1128 0.4 (saved) scaffold_64 614 242398 814370 814696 10 10 614 0 scaffold_74 614 230630 802632 802865 10 10 614 0 scaffold_4797 610 1 1244 3793 10 19 1123 0.4 scaffold_24 610 313485 886417 886824 10 10 610 0 scaffold_26 602 1 292144 292524 10 10 602 0 scaffold_7389 602 1 2284 2664 10 10 602 0 scaffold_3613 600 1 4981 5256 10 10 600 0 scaffold_116 600 297736 869702 869977 10 10 600 0 scaffold_76 595 1 17159 108428 9 27 1676 15.8 scaffold_227 594 1 295169 302428 10 17 995 1.2 scaffold_219 588 1 476769 477137 10 10 588 0 scaffold_97 573 1 562280 562819 10 10 573 0 scaffold_5 567 1406162 1978089 1978397 9 9 567 0 scaffold_52 567 1 75133 106433 9 17 1038 5.4 scaffold_120 563 1 559805 567517 10 17 951 1.3 scaffold_70 561 122845 620041 697834 9 17 1030 13.5 scaffold_63 560 1 161549 164213 9 17 1027 0.4 scaffold_27 558 639305 1211202 1211537 9 9 558 0 scaffold_6181 541 1 544 861 9 9 541 0 scaffold_4997 541 1 701 1018 9 9 541 0 scaffold_4283 541 1 1251 1568 9 9 541 0 scaffold_24 541 5753 271444 275683 9 18 1055 0.7 scaffold_2125 535 1 20852 21202 9 9 535 0 scaffold_62 531 375559 947549 947794 9 9 531 0 scaffold_23 524 1 280835 297700 9 16 924 2.9 scaffold_59 495 102432 674413 674817 8 8 495 0 scaffold_352 489 1 102616 103084 10 20 811 0 scaffold_67 396 570943 1142945 1143229 7 7 396 0 scaffold_370 395 1 133439 133696 7 7 395 0 scaffold_132 225 70133 642132 642368 4 4 225 0 scaffold_1 224 3844634 4416621 4416821 4 4 224 0 scaffold_260 222 1 332566 332763 4 4 222 0 scaffold_114 222 288673 860714 860896 4 4 222 0 scaffold_83 217 1 206761 206925 4 4 217 0 scaffold_160 152 1 324260 324459 4 8 289 0 global files summary: Takifugu_rubripes.glob01.scaffold_41.minQN4.fac2.01.blastresult Takifugu_rubripes.glob02.scaffold_12.minQN4.fac2.01.blastresult Takifugu_rubripes.glob03.scaffold_130.minQN4.fac2.01.blastresult Takifugu_rubripes.glob04.scaffold_100.minQN4.fac2.01.blastresult Takifugu_rubripes.glob05.scaffold_66.minQN4.fac2.01.blastresult Takifugu_rubripes.glob06.scaffold_48.minQN4.fac2.01.blastresult Takifugu_rubripes.glob07.scaffold_346.minQN4.fac2.01.blastresult Takifugu_rubripes.glob08.scaffold_3809.minQN4.fac2.01.blastresult Takifugu_rubripes.glob09.scaffold_39.minQN4.fac2.01.blastresult Takifugu_rubripes.glob10.scaffold_4108.minQN4.fac2.01.blastresult Takifugu_rubripes.glob11.scaffold_95.minQN4.fac2.01.blastresult Takifugu_rubripes.glob12.scaffold_6.minQN4.fac2.01.blastresult Takifugu_rubripes.glob13.scaffold_13.minQN4.fac2.01.blastresult Takifugu_rubripes.glob14.scaffold_107.minQN4.fac2.01.blastresult Takifugu_rubripes.glob15.scaffold_3110.minQN4.fac2.01.blastresult Takifugu_rubripes.glob16.scaffold_57.minQN4.fac2.01.blastresult Takifugu_rubripes.glob17.scaffold_142.minQN4.fac2.01.blastresult Takifugu_rubripes.glob18.scaffold_154.minQN4.fac2.01.blastresult Takifugu_rubripes.glob19.scaffold_659.minQN4.fac2.01.blastresult Takifugu_rubripes.glob20.scaffold_207.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ......................................chromosome scaffold_2125: 296 1 20795 21256 5 5 296 0 (marked for saving) chromosome scaffold_370: 273 1 133439 133645 5 5 273 0 (marked for saving) ...chromosome scaffold_154: 436 1 654099 654653 7 7 436 0 (marked for saving) chromosome scaffold_6181: 463 1 598 894 8 8 463 0 (marked for saving) chromosome scaffold_62: 468 1 947531 947803 8 8 468 0 (marked for saving) chromosome scaffold_59: 476 1 674434 674820 8 8 476 0 (marked for saving) chromosome scaffold_57: 483 1 608847 609038 8 8 483 0 (marked for saving) chromosome scaffold_4997: 463 1 755 1051 8 8 463 0 (marked for saving) chromosome scaffold_64: 492 1 814385 814696 8 8 492 0 (marked for saving) chromosome scaffold_4283: 463 1 1218 1514 8 8 463 0 (marked for saving) chromosome scaffold_659: 484 1 42662 42892 8 8 484 0 (marked for saving) chromosome scaffold_142: 484 1 745225 745446 8 8 484 0 (marked for saving) chromosome scaffold_6: 640 1543567 2704049 2704627 9 9 640 0 (marked for saving) chromosome scaffold_219: 524 1 476778 477110 9 9 524 0 (marked for saving) chromosome scaffold_3613: 536 1 4984 5304 9 9 536 0 (marked for saving) chromosome scaffold_7389: 542 1 2275 2589 9 9 542 0 (marked for saving) chromosome scaffold_27: 367 46673 373213 1211525 6 9 513 71.8 (marked for saving) chromosome scaffold_13: 664 339354 1499914 1500258 9 9 664 0 (marked for saving) chromosome scaffold_97: 503 1 562514 562810 9 9 503 0 (marked for saving) chromosome scaffold_4108: 857 1 5942 6196 9 9 857 0 (marked for saving) chromosome scaffold_116: 536 1 869705 870025 9 9 536 0 (marked for saving) chromosome scaffold_95: 726 1 213357 213686 9 9 726 0 (marked for saving) chromosome scaffold_74: 531 1 802611 802877 9 9 531 0 (marked for saving) chromosome scaffold_26: 542 210025 292219 292533 9 9 542 0 (marked for saving) chromosome scaffold_107: 683 1 112102 208460 10 10 683 8.2 (marked for saving) chromosome scaffold_3110: 692 1 2081 3808 9 10 818 0.1 (marked for saving) chromosome scaffold_3809: 855 1 3209 5756 9 10 906 0.2 (marked for saving) chromosome scaffold_5: 688 1255133 1978077 2416137 8 11 1044 37.5 (marked for saving) chromosome scaffold_23: 474 1 280832 600265 8 13 760 27.3 (marked for saving) chromosome scaffold_70: 486 1 620044 697837 8 13 772 6.6 (marked for saving) chromosome scaffold_120: 457 1 559808 567505 8 14 788 0.6 (marked for saving) chromosome scaffold_352: 336 1 102688 103087 7 14 564 0 (marked for saving) chromosome scaffold_52: 430 1 75133 106490 7 14 826 2.6 (marked for saving) chromosome scaffold_207: 480 1 497047 499767 8 15 872 0.2 (marked for saving) chromosome scaffold_4797: 474 1 1247 3778 8 15 864 0.2 (marked for saving) chromosome scaffold_63: 486 1 161501 164123 8 16 936 0.2 (marked for saving) chromosome scaffold_227: 520 1 295169 302398 9 16 913 0.6 (marked for saving) chromosome scaffold_76: 492 1 17186 108533 8 20 1202 7.8 (marked for saving) chromosome scaffold_39: 935 1 578900 598598 9 22 1861 1.6 (marked for saving) chromosome scaffold_346: 991 1 149638 226432 10 22 1794 6.5 (marked for saving) chromosome scaffold_24: 540 1 271459 886728 9 25 1428 52.7 (marked for saving) chromosome scaffold_130: 1118 1 627432 684837 11 42 3478 4.9 (marked for saving) chromosome scaffold_48: 1303 1 960816 1097507 12 52 4458 11.7 (marked for saving) chromosome scaffold_100: 1463 1 260907 372790 11 63 5786 9.5 (marked for saving) chromosome scaffold_12: 1436 1219042 2262517 2382351 11 89 7736 10.2 (marked for saving) chromosome scaffold_41: 1360 1 501809 744758 11 90 7782 20.8 (marked for saving) chromosome scaffold_66: 2525 1 66101 225073 13 98 9958 13.6 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_66 2525 1 66101 225073 13 98 9958 13.6 (saved) scaffold_100 1463 1 260907 372790 11 63 5786 9.5 (saved) scaffold_12 1436 1219042 2262517 2382351 11 89 7736 10.2 (saved) scaffold_41 1360 1 501809 744758 11 90 7782 20.8 (saved) scaffold_48 1303 1 960816 1097507 12 52 4458 11.7 (saved) scaffold_130 1118 1 627432 684837 11 42 3478 4.9 (saved) scaffold_346 991 1 149638 226432 10 22 1794 6.5 (saved) scaffold_39 935 1 578900 598598 9 22 1861 1.6 (saved) scaffold_4108 857 1 5942 6196 9 9 857 0 (saved) scaffold_3809 855 1 3209 5756 9 10 906 0.2 (saved) scaffold_95 726 1 213357 213686 9 9 726 0 (saved) scaffold_3110 692 1 2081 3808 9 10 818 0.1 (saved) scaffold_5 688 1255133 1978077 2416137 8 11 1044 37.5 (saved) scaffold_107 683 1 112102 208460 10 10 683 8.2 (saved) scaffold_13 664 339354 1499914 1500258 9 9 664 0 (saved) scaffold_6 640 1543567 2704049 2704627 9 9 640 0 (saved) scaffold_7389 542 1 2275 2589 9 9 542 0 (saved) scaffold_26 542 210025 292219 292533 9 9 542 0 (saved) scaffold_24 540 1 271459 886728 9 25 1428 52.7 (saved) scaffold_3613 536 1 4984 5304 9 9 536 0 (saved) scaffold_116 536 1 869705 870025 9 9 536 0 scaffold_74 531 1 802611 802877 9 9 531 0 scaffold_219 524 1 476778 477110 9 9 524 0 scaffold_227 520 1 295169 302398 9 16 913 0.6 scaffold_97 503 1 562514 562810 9 9 503 0 scaffold_64 492 1 814385 814696 8 8 492 0 scaffold_76 492 1 17186 108533 8 20 1202 7.8 scaffold_70 486 1 620044 697837 8 13 772 6.6 scaffold_63 486 1 161501 164123 8 16 936 0.2 scaffold_659 484 1 42662 42892 8 8 484 0 scaffold_142 484 1 745225 745446 8 8 484 0 scaffold_57 483 1 608847 609038 8 8 483 0 scaffold_207 480 1 497047 499767 8 15 872 0.2 scaffold_59 476 1 674434 674820 8 8 476 0 scaffold_23 474 1 280832 600265 8 13 760 27.3 scaffold_4797 474 1 1247 3778 8 15 864 0.2 scaffold_62 468 1 947531 947803 8 8 468 0 scaffold_6181 463 1 598 894 8 8 463 0 scaffold_4997 463 1 755 1051 8 8 463 0 scaffold_4283 463 1 1218 1514 8 8 463 0 scaffold_120 457 1 559808 567505 8 14 788 0.6 scaffold_154 436 1 654099 654653 7 7 436 0 scaffold_52 430 1 75133 106490 7 14 826 2.6 scaffold_27 367 46673 373213 1211525 6 9 513 71.8 scaffold_352 336 1 102688 103087 7 14 564 0 scaffold_2125 296 1 20795 21256 5 5 296 0 scaffold_370 273 1 133439 133645 5 5 273 0 global files summary: Takifugu_rubripes.glob01.scaffold_66.minQN4.fac2.01.blastresult Takifugu_rubripes.glob02.scaffold_100.minQN4.fac2.01.blastresult Takifugu_rubripes.glob03.scaffold_12.minQN4.fac2.01.blastresult Takifugu_rubripes.glob04.scaffold_41.minQN4.fac2.01.blastresult Takifugu_rubripes.glob05.scaffold_48.minQN4.fac2.01.blastresult Takifugu_rubripes.glob06.scaffold_130.minQN4.fac2.01.blastresult Takifugu_rubripes.glob07.scaffold_346.minQN4.fac2.01.blastresult Takifugu_rubripes.glob08.scaffold_39.minQN4.fac2.01.blastresult Takifugu_rubripes.glob09.scaffold_4108.minQN4.fac2.01.blastresult Takifugu_rubripes.glob10.scaffold_3809.minQN4.fac2.01.blastresult Takifugu_rubripes.glob11.scaffold_95.minQN4.fac2.01.blastresult Takifugu_rubripes.glob12.scaffold_3110.minQN4.fac2.01.blastresult Takifugu_rubripes.glob13.scaffold_5.minQN4.fac2.01.blastresult Takifugu_rubripes.glob14.scaffold_107.minQN4.fac2.01.blastresult Takifugu_rubripes.glob15.scaffold_13.minQN4.fac2.01.blastresult Takifugu_rubripes.glob16.scaffold_6.minQN4.fac2.01.blastresult Takifugu_rubripes.glob17.scaffold_7389.minQN4.fac2.01.blastresult Takifugu_rubripes.glob18.scaffold_26.minQN4.fac2.01.blastresult Takifugu_rubripes.glob19.scaffold_24.minQN4.fac2.01.blastresult Takifugu_rubripes.glob20.scaffold_3613.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .........chromosome scaffold_114: 278 49551 860714 860920 5 5 278 0 (marked for saving) chromosome scaffold_67: 339 331803 1142975 1143202 6 6 339 0 (marked for saving) chromosome scaffold_2125: 350 4078 20885 21220 6 6 350 0 (marked for saving) chromosome scaffold_338: 183 4078 97195 97589 4 8 312 0 (marked for saving) chromosome scaffold_154: 521 4078 654084 654794 8 8 521 0 (marked for saving) chromosome scaffold_370: 457 4078 133439 133750 8 8 457 0 (marked for saving) chromosome scaffold_5: 553 1167031 1977987 1978448 9 9 553 0 (marked for saving) chromosome scaffold_62: 515 136428 947525 947773 9 9 515 0 (marked for saving) chromosome scaffold_6181: 525 1 505 906 9 9 525 0 (marked for saving) chromosome scaffold_59: 527 4078 674296 674805 9 9 527 0 (marked for saving) chromosome scaffold_4997: 525 1 662 1063 9 9 525 0 (marked for saving) chromosome scaffold_57: 545 4078 608847 609056 9 9 545 0 (marked for saving) chromosome scaffold_64: 560 4078 814382 814645 9 9 560 0 (marked for saving) chromosome scaffold_27: 418 399547 778177 1211585 7 9 532 53.1 (marked for saving) chromosome scaffold_4283: 525 1 1206 1607 9 9 525 0 (marked for saving) chromosome scaffold_74: 547 4078 802560 802880 9 9 547 0 (marked for saving) chromosome scaffold_142: 546 4078 745195 745446 9 9 546 0 (marked for saving) chromosome scaffold_13: 722 688811 1499914 1500264 10 10 722 0 (marked for saving) chromosome scaffold_97: 562 4078 562277 562789 10 10 562 0 (marked for saving) chromosome scaffold_4108: 906 4078 5942 6187 10 10 906 0 (marked for saving) chromosome scaffold_26: 626 4078 292123 292542 10 10 626 0 (marked for saving) chromosome scaffold_6: 724 1893033 2704061 2704381 10 10 724 0 (marked for saving) chromosome scaffold_219: 591 4078 476769 477056 10 10 591 0 (marked for saving) chromosome scaffold_107: 686 4078 112174 112620 10 10 686 0 (marked for saving) chromosome scaffold_7389: 626 1 2266 2685 10 10 626 0 (marked for saving) chromosome scaffold_3613: 618 4078 4990 5322 10 10 618 0 (marked for saving) chromosome scaffold_116: 618 58605 869711 870043 10 10 618 0 (marked for saving) chromosome scaffold_659: 609 4078 42599 42895 10 10 609 0 (marked for saving) chromosome scaffold_95: 787 4078 213369 213722 10 10 787 0 (marked for saving) chromosome scaffold_3809: 840 4078 5460 5702 10 10 840 0 (marked for saving) chromosome scaffold_3110: 745 1 2177 3814 10 11 868 0.2 (marked for saving) chromosome scaffold_352: 275 4078 102691 103090 6 12 481 0 (marked for saving) chromosome scaffold_120: 514 4078 559763 567493 9 14 794 0.9 (marked for saving) chromosome scaffold_63: 541 4078 161516 164222 9 14 829 0.3 (marked for saving) chromosome scaffold_70: 542 4078 620044 697873 9 14 827 9.5 (marked for saving) chromosome scaffold_23: 534 4078 280835 297694 9 16 935 2 (marked for saving) chromosome scaffold_52: 541 4078 75133 664350 9 17 950 72.2 (marked for saving) chromosome scaffold_207: 549 4078 496990 499764 9 17 974 0.3 (marked for saving) chromosome scaffold_4797: 546 1 1241 3835 9 17 972 0.3 (marked for saving) chromosome scaffold_227: 536 4078 295142 302422 9 17 984 0.8 (marked for saving) chromosome scaffold_346: 1066 4078 186282 226492 10 23 1969 4.9 (marked for saving) chromosome scaffold_76: 554 4078 17228 108437 9 23 1378 11.1 (marked for saving) chromosome scaffold_24: 632 73387 271387 886905 10 28 1670 75.4 (marked for saving) chromosome scaffold_39: 1179 4078 568162 603585 12 36 2699 4.3 (marked for saving) chromosome scaffold_130: 924 4078 628804 642318 10 40 3236 1.6 (marked for saving) chromosome scaffold_48: 1179 270434 1057087 1085777 10 52 4476 3.5 (marked for saving) chromosome scaffold_100: 1890 4078 339085 394942 11 73 7035 6.8 (marked for saving) chromosome scaffold_41: 1343 4078 485042 661622 10 96 8095 21.6 (marked for saving) chromosome scaffold_12: 1397 1568974 2318883 2382177 10 96 8109 7.7 (marked for saving) chromosome scaffold_66: 1253 4078 126560 194452 10 97 8127 8.3 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_100 1890 4078 339085 394942 11 73 7035 6.8 (saved) scaffold_12 1397 1568974 2318883 2382177 10 96 8109 7.7 (saved) scaffold_41 1343 4078 485042 661622 10 96 8095 21.6 (saved) scaffold_66 1253 4078 126560 194452 10 97 8127 8.3 (saved) scaffold_39 1179 4078 568162 603585 12 36 2699 4.3 (saved) scaffold_48 1179 270434 1057087 1085777 10 52 4476 3.5 (saved) scaffold_346 1066 4078 186282 226492 10 23 1969 4.9 (saved) scaffold_130 924 4078 628804 642318 10 40 3236 1.6 (saved) scaffold_4108 906 4078 5942 6187 10 10 906 0 (saved) scaffold_3809 840 4078 5460 5702 10 10 840 0 (saved) scaffold_95 787 4078 213369 213722 10 10 787 0 (saved) scaffold_3110 745 1 2177 3814 10 11 868 0.2 (saved) scaffold_6 724 1893033 2704061 2704381 10 10 724 0 (saved) scaffold_13 722 688811 1499914 1500264 10 10 722 0 (saved) scaffold_107 686 4078 112174 112620 10 10 686 0 (saved) scaffold_24 632 73387 271387 886905 10 28 1670 75.4 (saved) scaffold_26 626 4078 292123 292542 10 10 626 0 (saved) scaffold_7389 626 1 2266 2685 10 10 626 0 (saved) scaffold_3613 618 4078 4990 5322 10 10 618 0 (saved) scaffold_116 618 58605 869711 870043 10 10 618 0 (saved) scaffold_659 609 4078 42599 42895 10 10 609 0 scaffold_219 591 4078 476769 477056 10 10 591 0 scaffold_97 562 4078 562277 562789 10 10 562 0 scaffold_64 560 4078 814382 814645 9 9 560 0 scaffold_76 554 4078 17228 108437 9 23 1378 11.1 scaffold_5 553 1167031 1977987 1978448 9 9 553 0 scaffold_207 549 4078 496990 499764 9 17 974 0.3 scaffold_74 547 4078 802560 802880 9 9 547 0 scaffold_142 546 4078 745195 745446 9 9 546 0 scaffold_4797 546 1 1241 3835 9 17 972 0.3 scaffold_57 545 4078 608847 609056 9 9 545 0 scaffold_70 542 4078 620044 697873 9 14 827 9.5 scaffold_63 541 4078 161516 164222 9 14 829 0.3 scaffold_52 541 4078 75133 664350 9 17 950 72.2 scaffold_227 536 4078 295142 302422 9 17 984 0.8 scaffold_23 534 4078 280835 297694 9 16 935 2 scaffold_59 527 4078 674296 674805 9 9 527 0 scaffold_6181 525 1 505 906 9 9 525 0 scaffold_4997 525 1 662 1063 9 9 525 0 scaffold_4283 525 1 1206 1607 9 9 525 0 scaffold_154 521 4078 654084 654794 8 8 521 0 scaffold_62 515 136428 947525 947773 9 9 515 0 scaffold_120 514 4078 559763 567493 9 14 794 0.9 scaffold_370 457 4078 133439 133750 8 8 457 0 scaffold_27 418 399547 778177 1211585 7 9 532 53.1 scaffold_2125 350 4078 20885 21220 6 6 350 0 scaffold_67 339 331803 1142975 1143202 6 6 339 0 scaffold_114 278 49551 860714 860920 5 5 278 0 scaffold_352 275 4078 102691 103090 6 12 481 0 scaffold_338 183 4078 97195 97589 4 8 312 0 global files summary: Takifugu_rubripes.glob01.scaffold_100.minQN4.fac2.01.blastresult Takifugu_rubripes.glob02.scaffold_12.minQN4.fac2.01.blastresult Takifugu_rubripes.glob03.scaffold_41.minQN4.fac2.01.blastresult Takifugu_rubripes.glob04.scaffold_66.minQN4.fac2.01.blastresult Takifugu_rubripes.glob05.scaffold_39.minQN4.fac2.01.blastresult Takifugu_rubripes.glob06.scaffold_48.minQN4.fac2.01.blastresult Takifugu_rubripes.glob07.scaffold_346.minQN4.fac2.01.blastresult Takifugu_rubripes.glob08.scaffold_130.minQN4.fac2.01.blastresult Takifugu_rubripes.glob09.scaffold_4108.minQN4.fac2.01.blastresult Takifugu_rubripes.glob10.scaffold_3809.minQN4.fac2.01.blastresult Takifugu_rubripes.glob11.scaffold_95.minQN4.fac2.01.blastresult Takifugu_rubripes.glob12.scaffold_3110.minQN4.fac2.01.blastresult Takifugu_rubripes.glob13.scaffold_6.minQN4.fac2.01.blastresult Takifugu_rubripes.glob14.scaffold_13.minQN4.fac2.01.blastresult Takifugu_rubripes.glob15.scaffold_107.minQN4.fac2.01.blastresult Takifugu_rubripes.glob16.scaffold_24.minQN4.fac2.01.blastresult Takifugu_rubripes.glob17.scaffold_26.minQN4.fac2.01.blastresult Takifugu_rubripes.glob18.scaffold_7389.minQN4.fac2.01.blastresult Takifugu_rubripes.glob19.scaffold_3613.minQN4.fac2.01.blastresult Takifugu_rubripes.glob20.scaffold_116.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .....chromosome 3: 222 11174743 12872088 12872237 4 4 222 0 (marked for saving) chromosome scaffold839: 501 1 32054 32272 8 8 501 0 (marked for saving) chromosome scaffold1066: 642 1 21701 22222 11 11 642 0 (marked for saving) chromosome scaffold1004: 938 1 40600 40941 12 12 938 0 (marked for saving) chromosome ultracontig256: 764 1 54397 54666 12 12 764 0 (marked for saving) chromosome scaffold571: 731 1 133861 134358 12 12 731 0 (marked for saving) chromosome 5: 746 29457890 31433011 31433400 12 12 746 0 (marked for saving) chromosome 24: 579 14288952 16254209 16264704 10 17 974 0.5 (marked for saving) chromosome 18: 612 13592855 14208103 14210483 10 19 1120 0.1 (marked for saving) chromosome 1: 645 35861622 37841177 37841740 11 11 645 0 (marked for saving) 589 31811406 32059313 32059609 10 10 589 0 (marked for saving) chromosome 12: 604 595621 918124 1475770 10 12 677 28 (marked for saving) 524 21412540 23393251 23393568 9 9 524 0 (marked for saving) chromosome 2: 874 16847619 17532338 17532625 12 12 874 0 (marked for saving) 746 22744257 24723109 24723543 12 12 746 0 (marked for saving) chromosome 17: 868 26545484 28522796 28523233 12 12 868 0 (marked for saving) 735 12637757 13401874 13402137 12 12 735 0 (marked for saving) chromosome 9: 726 15643748 16566715 16572411 11 21 1328 0.2 (marked for saving) 291 26345054 28326616 28326831 5 5 291 0 (marked for saving) chromosome 20: 1006 15169059 15674975 15675364 12 12 1006 0 (marked for saving) 750 15883803 17679384 17862760 12 16 967 9.2 (marked for saving) chromosome 14: 926 13846072 14327789 14328136 12 12 926 0 (marked for saving) 720 6559654 7492563 7492829 12 12 720 0 (marked for saving) 623 22204606 24182623 24183000 10 10 623 0 (marked for saving) chromosome 22: 724 119125 173996 183901 12 22 1295 0.4 (marked for saving) 660 14215465 16168155 16168658 11 11 660 0 (marked for saving) chromosome 10: 755 22369483 24353601 24354110 11 11 755 0 (marked for saving) 687 271981 2048673 2048978 11 11 687 0 (marked for saving) 661 9236062 10164481 10558877 11 11 661 19.8 (marked for saving) 633 15271678 16725021 16725287 11 11 633 0 (marked for saving) 221 6813874 7286578 7286712 4 4 221 0 (marked for saving) 216 11420002 12194085 12194258 4 4 216 0 (marked for saving) chromosome 19: 1364 15610642 17550439 17594165 13 55 4855 2.2 (marked for saving) 682 8622034 10438281 10438733 11 11 682 0 (marked for saving) chromosome 16: 1730 12582052 13097874 13146257 14 73 6364 2.4 (marked for saving) chromosome 21: 1713 24114512 24590626 24637174 12 91 7220 2.3 (marked for saving) 225 29207063 31184589 31184777 4 4 225 0 (marked for saving) chromosome 15: 1239 2412262 2960180 4374622 12 32 2649 71.2 (marked for saving) 771 21233854 22154311 23214512 12 34 2063 53.4 (marked for saving) 715 16419259 18112324 18276383 11 31 1921 8.2 (marked for saving) chromosome 8: 1756 22458083 24254371 24441965 12 105 9513 9.4 (marked for saving) chromosome 7: 1482 10934809 12836622 12915770 12 123 10506 3.9 (marked for saving) chromosome 11: 2657 8636545 10492542 10619894 13 132 12732 6.4 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 11 2657 8636545 10492542 10619894 13 132 12732 6.4 (saved) 8 1756 22458083 24254371 24441965 12 105 9513 9.4 (saved) 16 1730 12582052 13097874 13146257 14 73 6364 2.4 (saved) 21 1713 24114512 24590626 24637174 12 91 7220 2.3 (saved) 7 1482 10934809 12836622 12915770 12 123 10506 3.9 (saved) 19 1364 15610642 17550439 17594165 13 55 4855 2.2 (saved) 15 1239 2412262 2960180 4374622 12 32 2649 71.2 (saved) 20 1006 15169059 15674975 15675364 12 12 1006 0 (saved) scaffold1004 938 1 40600 40941 12 12 938 0 (saved) 14 926 13846072 14327789 14328136 12 12 926 0 (saved) 2 874 16847619 17532338 17532625 12 12 874 0 (saved) 17 868 26545484 28522796 28523233 12 12 868 0 (saved) 15 771 21233854 22154311 23214512 12 34 2063 53.4 (saved) ultracontig256 764 1 54397 54666 12 12 764 0 (saved) 10 755 22369483 24353601 24354110 11 11 755 0 (saved) 20 750 15883803 17679384 17862760 12 16 967 9.2 (saved) 5 746 29457890 31433011 31433400 12 12 746 0 (saved) 2 746 22744257 24723109 24723543 12 12 746 0 (saved) 17 735 12637757 13401874 13402137 12 12 735 0 (saved) scaffold571 731 1 133861 134358 12 12 731 0 (saved) 9 726 15643748 16566715 16572411 11 21 1328 0.2 22 724 119125 173996 183901 12 22 1295 0.4 14 720 6559654 7492563 7492829 12 12 720 0 15 715 16419259 18112324 18276383 11 31 1921 8.2 10 687 271981 2048673 2048978 11 11 687 0 19 682 8622034 10438281 10438733 11 11 682 0 10 661 9236062 10164481 10558877 11 11 661 19.8 22 660 14215465 16168155 16168658 11 11 660 0 1 645 35861622 37841177 37841740 11 11 645 0 scaffold1066 642 1 21701 22222 11 11 642 0 10 633 15271678 16725021 16725287 11 11 633 0 14 623 22204606 24182623 24183000 10 10 623 0 18 612 13592855 14208103 14210483 10 19 1120 0.1 12 604 595621 918124 1475770 10 12 677 28 1 589 31811406 32059313 32059609 10 10 589 0 24 579 14288952 16254209 16264704 10 17 974 0.5 12 524 21412540 23393251 23393568 9 9 524 0 scaffold839 501 1 32054 32272 8 8 501 0 9 291 26345054 28326616 28326831 5 5 291 0 21 225 29207063 31184589 31184777 4 4 225 0 3 222 11174743 12872088 12872237 4 4 222 0 10 221 6813874 7286578 7286712 4 4 221 0 10 216 11420002 12194085 12194258 4 4 216 0 global files summary: Oryzias_latipes.glob01.11.minQN4.fac2.01.blastresult Oryzias_latipes.glob02.8.minQN4.fac2.01.blastresult Oryzias_latipes.glob03.16.minQN4.fac2.01.blastresult Oryzias_latipes.glob04.21.minQN4.fac2.01.blastresult Oryzias_latipes.glob05.7.minQN4.fac2.01.blastresult Oryzias_latipes.glob06.19.minQN4.fac2.01.blastresult Oryzias_latipes.glob07.15.minQN4.fac2.01.blastresult Oryzias_latipes.glob08.20.minQN4.fac2.01.blastresult Oryzias_latipes.glob09.scaffold1004.minQN4.fac2.01.blastresult Oryzias_latipes.glob10.14.minQN4.fac2.01.blastresult Oryzias_latipes.glob11.2.minQN4.fac2.01.blastresult Oryzias_latipes.glob12.17.minQN4.fac2.01.blastresult Oryzias_latipes.glob13.15.minQN4.fac2.02.blastresult Oryzias_latipes.glob14.ultracontig256.minQN4.fac2.01.blastresult Oryzias_latipes.glob15.10.minQN4.fac2.01.blastresult Oryzias_latipes.glob16.20.minQN4.fac2.02.blastresult Oryzias_latipes.glob17.5.minQN4.fac2.01.blastresult Oryzias_latipes.glob18.2.minQN4.fac2.02.blastresult Oryzias_latipes.glob19.17.minQN4.fac2.02.blastresult Oryzias_latipes.glob20.scaffold571.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..chromosome scaffold839: 503 1 31976 32305 8 8 503 0 (marked for saving) chromosome scaffold1066: 539 1 21794 22219 9 9 539 0 (marked for saving) chromosome scaffold1004: 785 1 40600 40968 10 10 785 0 (marked for saving) chromosome scaffold571: 595 1 133915 134229 10 10 595 0 (marked for saving) chromosome ultracontig256: 633 1 54388 54687 10 10 633 0 (marked for saving) chromosome 5: 602 30861153 31433125 31433424 10 10 602 0 (marked for saving) chromosome 1: 529 31867003 32059349 32059588 9 9 529 0 (marked for saving) 406 37268131 37841330 37841653 7 7 406 0 (marked for saving) chromosome 24: 516 15690916 16254188 16264779 9 16 907 1.8 (marked for saving) chromosome 18: 546 13636119 14208124 14210510 9 17 1000 0.4 (marked for saving) chromosome 12: 549 1311918 1475411 1475764 9 9 549 0 (marked for saving) 445 22818646 23393266 23393508 8 8 445 0 (marked for saving) chromosome 17: 736 27949058 28522796 28523209 10 10 736 0 (marked for saving) 610 12844306 13401892 13402128 10 10 610 0 (marked for saving) chromosome 2: 761 17066784 17532338 17532628 10 10 761 0 (marked for saving) 613 24150372 24723157 24723567 10 10 613 0 (marked for saving) chromosome 20: 863 15298694 15675017 15675352 10 10 863 0 (marked for saving) 621 17288886 17679366 17862760 10 13 782 31.8 (marked for saving) chromosome 9: 599 16443405 16566733 16572345 9 18 1144 0.9 (marked for saving) 342 27751837 28326622 28326888 6 6 342 0 (marked for saving) chromosome 14: 783 14323406 14327786 14328106 10 10 783 0 (marked for saving) 588 7254198 7492575 7492814 10 10 588 0 (marked for saving) 557 23610010 24182614 24182967 9 9 557 0 (marked for saving) chromosome 22: 538 1 174026 183841 9 16 940 1.7 (marked for saving) 527 15639689 16168143 16168475 9 9 527 0 (marked for saving) chromosome 10: 618 1916732 2048655 2048990 10 10 618 0 (marked for saving) 615 23780084 24353601 24354056 9 9 615 0 (marked for saving) 570 16636100 16725024 16725479 10 10 570 0 (marked for saving) 498 10018424 10558620 10558877 8 8 498 0 (marked for saving) 222 12005740 12194085 12194249 4 4 222 0 (marked for saving) 217 7102160 7286533 7286712 4 4 217 0 (marked for saving) chromosome 16: 1069 12819727 13115273 13137431 10 52 4227 3.8 (marked for saving) chromosome 19: 1353 17030581 17578415 17604302 11 46 4486 4.5 (marked for saving) 569 10384145 10438281 10438850 9 9 569 0 (marked for saving) chromosome 21: 1300 24229367 24591355 24637174 10 74 5612 7.9 (marked for saving) 221 30611211 31184589 31184783 4 4 221 0 (marked for saving) chromosome 15: 1049 3975423 4350826 4374607 10 20 1836 4.1 (marked for saving) 608 22033827 22154314 22158926 10 19 1123 0.8 (marked for saving) 605 22640663 23214090 23214431 10 10 605 0 (marked for saving) 591 17860751 18112417 18276260 9 25 1562 28.4 (marked for saving) 497 2741619 2960189 2960440 8 8 497 0 (marked for saving) chromosome 8: 1765 23869757 24280265 24441965 10 87 8600 28.1 (marked for saving) chromosome 11: 1574 9998336 10492560 10571803 10 104 9236 13.7 (marked for saving) chromosome 7: 1245 12342746 12836721 12915695 10 104 8965 13.7 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 8 1765 23869757 24280265 24441965 10 87 8600 28.1 (saved) 11 1574 9998336 10492560 10571803 10 104 9236 13.7 (saved) 19 1353 17030581 17578415 17604302 11 46 4486 4.5 (saved) 21 1300 24229367 24591355 24637174 10 74 5612 7.9 (saved) 7 1245 12342746 12836721 12915695 10 104 8965 13.7 (saved) 16 1069 12819727 13115273 13137431 10 52 4227 3.8 (saved) 15 1049 3975423 4350826 4374607 10 20 1836 4.1 (saved) 20 863 15298694 15675017 15675352 10 10 863 0 (saved) scaffold1004 785 1 40600 40968 10 10 785 0 (saved) 14 783 14323406 14327786 14328106 10 10 783 0 (saved) 2 761 17066784 17532338 17532628 10 10 761 0 (saved) 17 736 27949058 28522796 28523209 10 10 736 0 (saved) ultracontig256 633 1 54388 54687 10 10 633 0 (saved) 20 621 17288886 17679366 17862760 10 13 782 31.8 (saved) 10 618 1916732 2048655 2048990 10 10 618 0 (saved) 10 615 23780084 24353601 24354056 9 9 615 0 (saved) 2 613 24150372 24723157 24723567 10 10 613 0 (saved) 17 610 12844306 13401892 13402128 10 10 610 0 (saved) 15 608 22033827 22154314 22158926 10 19 1123 0.8 (saved) 15 605 22640663 23214090 23214431 10 10 605 0 (saved) 5 602 30861153 31433125 31433424 10 10 602 0 9 599 16443405 16566733 16572345 9 18 1144 0.9 scaffold571 595 1 133915 134229 10 10 595 0 15 591 17860751 18112417 18276260 9 25 1562 28.4 14 588 7254198 7492575 7492814 10 10 588 0 10 570 16636100 16725024 16725479 10 10 570 0 19 569 10384145 10438281 10438850 9 9 569 0 14 557 23610010 24182614 24182967 9 9 557 0 12 549 1311918 1475411 1475764 9 9 549 0 18 546 13636119 14208124 14210510 9 17 1000 0.4 scaffold1066 539 1 21794 22219 9 9 539 0 22 538 1 174026 183841 9 16 940 1.7 1 529 31867003 32059349 32059588 9 9 529 0 22 527 15639689 16168143 16168475 9 9 527 0 24 516 15690916 16254188 16264779 9 16 907 1.8 scaffold839 503 1 31976 32305 8 8 503 0 10 498 10018424 10558620 10558877 8 8 498 0 15 497 2741619 2960189 2960440 8 8 497 0 12 445 22818646 23393266 23393508 8 8 445 0 1 406 37268131 37841330 37841653 7 7 406 0 9 342 27751837 28326622 28326888 6 6 342 0 10 222 12005740 12194085 12194249 4 4 222 0 21 221 30611211 31184589 31184783 4 4 221 0 10 217 7102160 7286533 7286712 4 4 217 0 global files summary: Oryzias_latipes.glob01.8.minQN4.fac2.01.blastresult Oryzias_latipes.glob02.11.minQN4.fac2.01.blastresult Oryzias_latipes.glob03.19.minQN4.fac2.01.blastresult Oryzias_latipes.glob04.21.minQN4.fac2.01.blastresult Oryzias_latipes.glob05.7.minQN4.fac2.01.blastresult Oryzias_latipes.glob06.16.minQN4.fac2.01.blastresult Oryzias_latipes.glob07.15.minQN4.fac2.01.blastresult Oryzias_latipes.glob08.20.minQN4.fac2.01.blastresult Oryzias_latipes.glob09.scaffold1004.minQN4.fac2.01.blastresult Oryzias_latipes.glob10.14.minQN4.fac2.01.blastresult Oryzias_latipes.glob11.2.minQN4.fac2.01.blastresult Oryzias_latipes.glob12.17.minQN4.fac2.01.blastresult Oryzias_latipes.glob13.ultracontig256.minQN4.fac2.01.blastresult Oryzias_latipes.glob14.20.minQN4.fac2.02.blastresult Oryzias_latipes.glob15.10.minQN4.fac2.01.blastresult Oryzias_latipes.glob16.10.minQN4.fac2.02.blastresult Oryzias_latipes.glob17.2.minQN4.fac2.02.blastresult Oryzias_latipes.glob18.17.minQN4.fac2.02.blastresult Oryzias_latipes.glob19.15.minQN4.fac2.02.blastresult Oryzias_latipes.glob20.15.minQN4.fac2.03.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .........chromosome scaffold839: 309 1 32063 32281 5 5 309 0 (marked for saving) ...chromosome scaffold1066: 469 1 21782 22189 8 8 469 0 (marked for saving) chromosome scaffold571: 534 1 133924 134286 9 9 534 0 (marked for saving) chromosome scaffold1004: 658 1 40654 40983 9 9 658 0 (marked for saving) chromosome ultracontig256: 549 1 54394 54672 9 9 549 0 (marked for saving) chromosome 1: 415 31657212 32059340 32059594 7 7 415 0 (marked for saving) 393 36680286 37841396 37841956 7 7 393 0 (marked for saving) chromosome 18: 479 13560923 14208118 14210516 8 13 756 0.2 (marked for saving) chromosome 12: 532 1470070 1475414 1928176 9 10 588 38.8 (marked for saving) 273 22227442 23393302 23393508 5 5 273 0 (marked for saving) chromosome 24: 400 16199983 16254194 16264668 7 13 734 0.8 (marked for saving) chromosome 5: 536 30271709 31433077 31433400 9 9 536 0 (marked for saving) chromosome 9: 549 16031435 16566700 16572339 9 16 942 0.4 (marked for saving) chromosome 2: 595 17182710 17532350 17532712 9 9 595 0 (marked for saving) 543 23559272 24723157 24723549 9 9 543 0 (marked for saving) chromosome 20: 726 15249631 15675026 15675352 9 9 726 0 (marked for saving) 544 16696463 17679384 17862757 9 10 598 15.7 (marked for saving) chromosome 17: 676 27358644 28352180 28523236 10 11 730 14.6 (marked for saving) 652 12365264 12913296 13402146 11 11 652 41.9 (marked for saving) chromosome 22: 578 99179 173996 1209275 10 18 1020 88.7 (marked for saving) 355 15005049 16168143 16168484 6 6 355 0 (marked for saving) chromosome 14: 644 13904535 14327786 14328121 9 9 644 0 (marked for saving) 525 6985411 7492584 7492820 9 9 525 0 (marked for saving) 422 23688153 24182584 24182961 7 7 422 0 (marked for saving) chromosome 19: 1161 16430361 17517940 17594165 11 41 3506 6.5 (marked for saving) 473 9767933 10438272 10438667 8 8 473 0 (marked for saving) chromosome 10: 734 886769 929283 2048891 8 19 2000 95.9 (marked for saving) 500 15600117 16725024 16725284 9 9 500 0 (marked for saving) 490 23190151 24353601 24354107 8 8 490 0 (marked for saving) 362 9544425 10558605 10558832 6 6 362 0 (marked for saving) 222 7199157 7286554 7564949 4 4 222 23.8 (marked for saving) chromosome 16: 1195 12990150 13089813 13274687 12 53 4393 15.8 (marked for saving) chromosome 15: 955 3292001 4350772 4374628 9 19 1692 2 (marked for saving) 556 22141655 22154308 23214425 9 24 1404 90.8 (marked for saving) 485 17130249 18112294 18276383 8 20 1195 14 (marked for saving) 307 2008521 2960189 2960440 5 5 307 0 (marked for saving) chromosome 21: 1464 24011952 24601819 24760609 11 71 5877 13.6 (marked for saving) chromosome 8: 1321 23432444 24280190 24595464 11 80 6930 27 (marked for saving) chromosome 11: 1475 9733464 10386271 10632363 12 96 8190 21 (marked for saving) chromosome 7: 2485 12455618 12781664 12979066 13 111 10819 16.9 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 7 2485 12455618 12781664 12979066 13 111 10819 16.9 (saved) 11 1475 9733464 10386271 10632363 12 96 8190 21 (saved) 21 1464 24011952 24601819 24760609 11 71 5877 13.6 (saved) 8 1321 23432444 24280190 24595464 11 80 6930 27 (saved) 16 1195 12990150 13089813 13274687 12 53 4393 15.8 (saved) 19 1161 16430361 17517940 17594165 11 41 3506 6.5 (saved) 15 955 3292001 4350772 4374628 9 19 1692 2 (saved) 10 734 886769 929283 2048891 8 19 2000 95.9 (saved) 20 726 15249631 15675026 15675352 9 9 726 0 (saved) 17 676 27358644 28352180 28523236 10 11 730 14.6 (saved) scaffold1004 658 1 40654 40983 9 9 658 0 (saved) 17 652 12365264 12913296 13402146 11 11 652 41.9 (saved) 14 644 13904535 14327786 14328121 9 9 644 0 (saved) 2 595 17182710 17532350 17532712 9 9 595 0 (saved) 22 578 99179 173996 1209275 10 18 1020 88.7 (saved) 15 556 22141655 22154308 23214425 9 24 1404 90.8 (saved) ultracontig256 549 1 54394 54672 9 9 549 0 (saved) 9 549 16031435 16566700 16572339 9 16 942 0.4 (saved) 20 544 16696463 17679384 17862757 9 10 598 15.7 (saved) 2 543 23559272 24723157 24723549 9 9 543 0 (saved) 5 536 30271709 31433077 31433400 9 9 536 0 scaffold571 534 1 133924 134286 9 9 534 0 12 532 1470070 1475414 1928176 9 10 588 38.8 14 525 6985411 7492584 7492820 9 9 525 0 10 500 15600117 16725024 16725284 9 9 500 0 10 490 23190151 24353601 24354107 8 8 490 0 15 485 17130249 18112294 18276383 8 20 1195 14 18 479 13560923 14208118 14210516 8 13 756 0.2 19 473 9767933 10438272 10438667 8 8 473 0 scaffold1066 469 1 21782 22189 8 8 469 0 14 422 23688153 24182584 24182961 7 7 422 0 1 415 31657212 32059340 32059594 7 7 415 0 24 400 16199983 16254194 16264668 7 13 734 0.8 1 393 36680286 37841396 37841956 7 7 393 0 10 362 9544425 10558605 10558832 6 6 362 0 22 355 15005049 16168143 16168484 6 6 355 0 scaffold839 309 1 32063 32281 5 5 309 0 15 307 2008521 2960189 2960440 5 5 307 0 12 273 22227442 23393302 23393508 5 5 273 0 10 222 7199157 7286554 7564949 4 4 222 23.8 global files summary: Oryzias_latipes.glob01.7.minQN4.fac2.01.blastresult Oryzias_latipes.glob02.11.minQN4.fac2.01.blastresult Oryzias_latipes.glob03.21.minQN4.fac2.01.blastresult Oryzias_latipes.glob04.8.minQN4.fac2.01.blastresult Oryzias_latipes.glob05.16.minQN4.fac2.01.blastresult Oryzias_latipes.glob06.19.minQN4.fac2.01.blastresult Oryzias_latipes.glob07.15.minQN4.fac2.01.blastresult Oryzias_latipes.glob08.10.minQN4.fac2.01.blastresult Oryzias_latipes.glob09.20.minQN4.fac2.01.blastresult Oryzias_latipes.glob10.17.minQN4.fac2.01.blastresult Oryzias_latipes.glob11.scaffold1004.minQN4.fac2.01.blastresult Oryzias_latipes.glob12.17.minQN4.fac2.02.blastresult Oryzias_latipes.glob13.14.minQN4.fac2.01.blastresult Oryzias_latipes.glob14.2.minQN4.fac2.01.blastresult Oryzias_latipes.glob15.22.minQN4.fac2.01.blastresult Oryzias_latipes.glob16.15.minQN4.fac2.02.blastresult Oryzias_latipes.glob17.ultracontig256.minQN4.fac2.01.blastresult Oryzias_latipes.glob18.9.minQN4.fac2.01.blastresult Oryzias_latipes.glob19.20.minQN4.fac2.02.blastresult Oryzias_latipes.glob20.2.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .chromosome scaffold839: 361 4078 32027 32281 6 6 361 0 (marked for saving) chromosome scaffold1066: 464 4078 21818 22153 8 8 464 0 (marked for saving) chromosome scaffold1004: 736 4078 40618 40920 10 10 736 0 (marked for saving) chromosome ultracontig256: 603 4078 54385 54675 10 10 603 0 (marked for saving) chromosome scaffold571: 612 4078 133855 134343 10 10 612 0 (marked for saving) chromosome 5: 619 30622022 31433059 31433430 10 10 619 0 (marked for saving) chromosome 18: 479 13396988 14208118 14210450 8 13 765 0.2 (marked for saving) chromosome 24: 523 15451311 16254191 16264734 9 15 855 1.2 (marked for saving) chromosome 1: 466 37029426 37841339 37841899 8 8 466 0 (marked for saving) 465 31749711 32059370 32059624 8 8 465 0 (marked for saving) chromosome 2: 686 16847619 17532332 17532676 10 10 686 0 (marked for saving) 556 23908983 24723226 24723528 9 9 556 0 (marked for saving) chromosome 17: 678 27708311 28522790 28523149 10 10 678 0 (marked for saving) 552 13287962 13401826 13402146 9 9 552 0 (marked for saving) chromosome 12: 528 787781 918154 1475815 9 11 601 68.3 (marked for saving) 458 22579346 23393245 23393568 8 8 458 0 (marked for saving) chromosome 9: 561 16318235 16566742 16572342 9 18 1082 0.6 (marked for saving) chromosome 20: 788 15226848 15675014 15675343 10 10 788 0 (marked for saving) 547 17049267 17679414 17862757 9 11 653 22.4 (marked for saving) chromosome 14: 725 13551196 14327771 14328109 10 10 725 0 (marked for saving) 595 6844531 7492584 7492850 10 10 595 0 (marked for saving) 415 23368612 24182614 24182955 7 7 415 0 (marked for saving) chromosome 22: 545 16309 174002 183814 9 16 945 1.2 (marked for saving) 467 15533371 16168143 16168496 8 8 467 0 (marked for saving) chromosome 10: 570 23538763 24353640 24354059 9 9 570 0 (marked for saving) 551 2028511 2048658 2049092 9 9 551 0 (marked for saving) 465 10219204 10558605 10558868 8 8 465 0 (marked for saving) 458 16457014 16725006 16725557 8 8 458 0 (marked for saving) chromosome 19: 935 16778392 17578385 17592929 10 40 3264 1.7 (marked for saving) 528 9880108 10438269 10438733 9 9 528 0 (marked for saving) chromosome 16: 1074 13099524 13115399 13137005 10 53 4425 2.6 (marked for saving) chromosome 21: 1834 24159654 24538670 24637174 11 79 6901 12 (marked for saving) chromosome 8: 1296 23626994 24254536 24441881 10 86 7277 22.9 (marked for saving) chromosome 15: 1150 3685845 4337486 4400015 12 30 2359 7.6 (marked for saving) 625 22399275 23214114 23214491 10 10 625 0 (marked for saving) 555 17625108 18112315 18276260 9 23 1373 20.1 (marked for saving) 554 22007883 22154365 22158938 9 18 1072 0.5 (marked for saving) 464 2703288 2960168 2960464 8 8 464 0 (marked for saving) chromosome 11: 1529 9759016 10492554 10572561 10 101 8695 9.8 (marked for saving) chromosome 7: 1247 12103432 12836772 12915743 10 106 8813 9.6 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 21 1834 24159654 24538670 24637174 11 79 6901 12 (saved) 11 1529 9759016 10492554 10572561 10 101 8695 9.8 (saved) 8 1296 23626994 24254536 24441881 10 86 7277 22.9 (saved) 7 1247 12103432 12836772 12915743 10 106 8813 9.6 (saved) 15 1150 3685845 4337486 4400015 12 30 2359 7.6 (saved) 16 1074 13099524 13115399 13137005 10 53 4425 2.6 (saved) 19 935 16778392 17578385 17592929 10 40 3264 1.7 (saved) 20 788 15226848 15675014 15675343 10 10 788 0 (saved) scaffold1004 736 4078 40618 40920 10 10 736 0 (saved) 14 725 13551196 14327771 14328109 10 10 725 0 (saved) 2 686 16847619 17532332 17532676 10 10 686 0 (saved) 17 678 27708311 28522790 28523149 10 10 678 0 (saved) 15 625 22399275 23214114 23214491 10 10 625 0 (saved) 5 619 30622022 31433059 31433430 10 10 619 0 (saved) scaffold571 612 4078 133855 134343 10 10 612 0 (saved) ultracontig256 603 4078 54385 54675 10 10 603 0 (saved) 14 595 6844531 7492584 7492850 10 10 595 0 (saved) 10 570 23538763 24353640 24354059 9 9 570 0 (saved) 9 561 16318235 16566742 16572342 9 18 1082 0.6 (saved) 2 556 23908983 24723226 24723528 9 9 556 0 (saved) 15 555 17625108 18112315 18276260 9 23 1373 20.1 15 554 22007883 22154365 22158938 9 18 1072 0.5 17 552 13287962 13401826 13402146 9 9 552 0 10 551 2028511 2048658 2049092 9 9 551 0 20 547 17049267 17679414 17862757 9 11 653 22.4 22 545 16309 174002 183814 9 16 945 1.2 12 528 787781 918154 1475815 9 11 601 68.3 19 528 9880108 10438269 10438733 9 9 528 0 24 523 15451311 16254191 16264734 9 15 855 1.2 18 479 13396988 14208118 14210450 8 13 765 0.2 22 467 15533371 16168143 16168496 8 8 467 0 1 466 37029426 37841339 37841899 8 8 466 0 1 465 31749711 32059370 32059624 8 8 465 0 10 465 10219204 10558605 10558868 8 8 465 0 scaffold1066 464 4078 21818 22153 8 8 464 0 15 464 2703288 2960168 2960464 8 8 464 0 12 458 22579346 23393245 23393568 8 8 458 0 10 458 16457014 16725006 16725557 8 8 458 0 14 415 23368612 24182614 24182955 7 7 415 0 scaffold839 361 4078 32027 32281 6 6 361 0 global files summary: Oryzias_latipes.glob01.21.minQN4.fac2.01.blastresult Oryzias_latipes.glob02.11.minQN4.fac2.01.blastresult Oryzias_latipes.glob03.8.minQN4.fac2.01.blastresult Oryzias_latipes.glob04.7.minQN4.fac2.01.blastresult Oryzias_latipes.glob05.15.minQN4.fac2.01.blastresult Oryzias_latipes.glob06.16.minQN4.fac2.01.blastresult Oryzias_latipes.glob07.19.minQN4.fac2.01.blastresult Oryzias_latipes.glob08.20.minQN4.fac2.01.blastresult Oryzias_latipes.glob09.scaffold1004.minQN4.fac2.01.blastresult Oryzias_latipes.glob10.14.minQN4.fac2.01.blastresult Oryzias_latipes.glob11.2.minQN4.fac2.01.blastresult Oryzias_latipes.glob12.17.minQN4.fac2.01.blastresult Oryzias_latipes.glob13.15.minQN4.fac2.02.blastresult Oryzias_latipes.glob14.5.minQN4.fac2.01.blastresult Oryzias_latipes.glob15.scaffold571.minQN4.fac2.01.blastresult Oryzias_latipes.glob16.ultracontig256.minQN4.fac2.01.blastresult Oryzias_latipes.glob17.14.minQN4.fac2.02.blastresult Oryzias_latipes.glob18.10.minQN4.fac2.01.blastresult Oryzias_latipes.glob19.9.minQN4.fac2.01.blastresult Oryzias_latipes.glob20.2.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .................chromosome 13: 941 49435386 49574036 49574560 12 12 941 0 (marked for saving) chromosome 6: 398 60853520 61029736 61029978 7 7 398 0 (marked for saving) chromosome 19: 679 32168511 34153512 34153838 11 11 679 0 (marked for saving) chromosome 24: 622 3819574 4930959 5035892 10 18 1087 5.2 (marked for saving) chromosome 8: 611 16179688 18094043 18157145 10 17 1017 3.1 (marked for saving) chromosome 17: 737 49729840 51694917 51712286 12 21 1252 0.8 (marked for saving) chromosome 16: 888 16715376 18144614 18145075 12 12 888 0 (marked for saving) 698 20487636 21315804 22464874 11 13 811 57.8 (marked for saving) chromosome 3: 723 72645339 73063624 73063971 12 12 723 0 (marked for saving) 637 68813517 69373141 69373539 10 10 637 0 (marked for saving) 510 63036003 63323630 63323875 8 8 510 0 (marked for saving) chromosome 4: 746 40688857 41194659 42438416 12 22 1326 62.6 (marked for saving) 637 42485644 44014501 44014998 10 10 637 0 (marked for saving) chromosome 28: 717 14938767 15464513 16870853 11 29 1773 70.8 (marked for saving) 620 34832475 35675354 36809835 10 24 1471 57.1 (marked for saving) chromosome 25: 1034 14319492 14692875 14841952 12 26 2078 7.5 (marked for saving) 866 48051438 50029777 50030220 12 12 866 0 (marked for saving) 686 35910717 36773083 36804502 11 21 1277 1.5 (marked for saving) chromosome 27: 1479 2346005 4211959 4324539 12 98 8214 5.6 (marked for saving) chromosome 36: 1796 21039064 22914522 23023340 12 112 9687 5.4 (marked for saving) chromosome 9: 1816 26996816 27762688 28287891 13 129 11725 26.4 (marked for saving) 536 53065118 55049762 55050193 9 9 536 0 (marked for saving) chromosome 14: 4676 41742294 42873930 43723829 15 161 18277 42.8 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 14 4676 41742294 42873930 43723829 15 161 18277 42.8 (saved) 9 1816 26996816 27762688 28287891 13 129 11725 26.4 (saved) 36 1796 21039064 22914522 23023340 12 112 9687 5.4 (saved) 27 1479 2346005 4211959 4324539 12 98 8214 5.6 (saved) 25 1034 14319492 14692875 14841952 12 26 2078 7.5 (saved) 13 941 49435386 49574036 49574560 12 12 941 0 (saved) 16 888 16715376 18144614 18145075 12 12 888 0 (saved) 25 866 48051438 50029777 50030220 12 12 866 0 (saved) 4 746 40688857 41194659 42438416 12 22 1326 62.6 (saved) 17 737 49729840 51694917 51712286 12 21 1252 0.8 (saved) 3 723 72645339 73063624 73063971 12 12 723 0 (saved) 28 717 14938767 15464513 16870853 11 29 1773 70.8 (saved) 16 698 20487636 21315804 22464874 11 13 811 57.8 (saved) 25 686 35910717 36773083 36804502 11 21 1277 1.5 (saved) 19 679 32168511 34153512 34153838 11 11 679 0 (saved) 3 637 68813517 69373141 69373539 10 10 637 0 (saved) 4 637 42485644 44014501 44014998 10 10 637 0 (saved) 24 622 3819574 4930959 5035892 10 18 1087 5.2 (saved) 28 620 34832475 35675354 36809835 10 24 1471 57.1 (saved) 8 611 16179688 18094043 18157145 10 17 1017 3.1 (saved) 9 536 53065118 55049762 55050193 9 9 536 0 3 510 63036003 63323630 63323875 8 8 510 0 6 398 60853520 61029736 61029978 7 7 398 0 global files summary: Canis_familiaris.glob01.14.minQN4.fac2.01.blastresult Canis_familiaris.glob02.9.minQN4.fac2.01.blastresult Canis_familiaris.glob03.36.minQN4.fac2.01.blastresult Canis_familiaris.glob04.27.minQN4.fac2.01.blastresult Canis_familiaris.glob05.25.minQN4.fac2.01.blastresult Canis_familiaris.glob06.13.minQN4.fac2.01.blastresult Canis_familiaris.glob07.16.minQN4.fac2.01.blastresult Canis_familiaris.glob08.25.minQN4.fac2.02.blastresult Canis_familiaris.glob09.4.minQN4.fac2.01.blastresult Canis_familiaris.glob10.17.minQN4.fac2.01.blastresult Canis_familiaris.glob11.3.minQN4.fac2.01.blastresult Canis_familiaris.glob12.28.minQN4.fac2.01.blastresult Canis_familiaris.glob13.16.minQN4.fac2.02.blastresult Canis_familiaris.glob14.25.minQN4.fac2.03.blastresult Canis_familiaris.glob15.19.minQN4.fac2.01.blastresult Canis_familiaris.glob16.3.minQN4.fac2.02.blastresult Canis_familiaris.glob17.4.minQN4.fac2.02.blastresult Canis_familiaris.glob18.24.minQN4.fac2.01.blastresult Canis_familiaris.glob19.28.minQN4.fac2.02.blastresult Canis_familiaris.glob20.8.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..chromosome 6: 227 60592963 61029772 61029978 4 4 227 0 (marked for saving) .chromosome 19: 553 33581555 34153545 34153769 9 9 553 0 (marked for saving) chromosome 13: 792 49002154 49574048 49574449 10 10 792 0 (marked for saving) chromosome 24: 484 4462724 4930896 5035886 8 14 820 18.2 (marked for saving) chromosome 17: 562 51137556 51694800 51712298 9 15 909 3 (marked for saving) chromosome 8: 540 17584403 18094046 18157226 9 13 775 10.9 (marked for saving) chromosome 16: 747 17641675 18144614 18144925 10 10 747 0 (marked for saving) 631 21262559 21315795 21316277 10 10 631 0 (marked for saving) chromosome 3: 603 72491695 73063702 73063974 10 10 603 0 (marked for saving) 514 69336723 69373126 69373560 8 8 514 0 (marked for saving) 495 63058415 63323648 63323875 8 8 495 0 (marked for saving) chromosome 4: 601 41146356 41194680 41195174 10 10 601 0 (marked for saving) 578 42302508 42438057 42438416 10 10 578 0 (marked for saving) 523 43841168 44014501 44014920 8 8 523 0 (marked for saving) chromosome 28: 581 16569588 16806480 16870799 9 17 1053 11.1 (marked for saving) 527 15407684 15464507 15464896 9 9 527 0 (marked for saving) 518 35669104 35675915 35688411 8 16 1008 2.1 (marked for saving) 463 36235676 36809668 36809835 8 8 463 0 (marked for saving) chromosome 25: 886 14624110 14692875 14841844 10 24 1896 25.9 (marked for saving) 743 49455346 50029777 50030244 10 10 743 0 (marked for saving) 560 36513346 36773050 36804406 9 18 1092 5.4 (marked for saving) chromosome 27: 1230 3752235 4211968 4324536 10 83 7124 19.5 (marked for saving) chromosome 36: 1437 22448328 22916593 23023331 10 95 8060 18.5 (marked for saving) chromosome 14: 1606 42802406 43223880 43376476 10 119 11132 26.5 (marked for saving) chromosome 9: 3599 27788321 28119456 28360233 12 119 14057 41.8 (marked for saving) 290 54477601 55049684 55049968 5 5 290 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 9 3599 27788321 28119456 28360233 12 119 14057 41.8 (saved) 14 1606 42802406 43223880 43376476 10 119 11132 26.5 (saved) 36 1437 22448328 22916593 23023331 10 95 8060 18.5 (saved) 27 1230 3752235 4211968 4324536 10 83 7124 19.5 (saved) 25 886 14624110 14692875 14841844 10 24 1896 25.9 (saved) 13 792 49002154 49574048 49574449 10 10 792 0 (saved) 16 747 17641675 18144614 18144925 10 10 747 0 (saved) 25 743 49455346 50029777 50030244 10 10 743 0 (saved) 16 631 21262559 21315795 21316277 10 10 631 0 (saved) 3 603 72491695 73063702 73063974 10 10 603 0 (saved) 4 601 41146356 41194680 41195174 10 10 601 0 (saved) 28 581 16569588 16806480 16870799 9 17 1053 11.1 (saved) 4 578 42302508 42438057 42438416 10 10 578 0 (saved) 17 562 51137556 51694800 51712298 9 15 909 3 (saved) 25 560 36513346 36773050 36804406 9 18 1092 5.4 (saved) 19 553 33581555 34153545 34153769 9 9 553 0 (saved) 8 540 17584403 18094046 18157226 9 13 775 10.9 (saved) 28 527 15407684 15464507 15464896 9 9 527 0 (saved) 4 523 43841168 44014501 44014920 8 8 523 0 (saved) 28 518 35669104 35675915 35688411 8 16 1008 2.1 (saved) 3 514 69336723 69373126 69373560 8 8 514 0 3 495 63058415 63323648 63323875 8 8 495 0 24 484 4462724 4930896 5035886 8 14 820 18.2 28 463 36235676 36809668 36809835 8 8 463 0 9 290 54477601 55049684 55049968 5 5 290 0 6 227 60592963 61029772 61029978 4 4 227 0 global files summary: Canis_familiaris.glob01.9.minQN4.fac2.01.blastresult Canis_familiaris.glob02.14.minQN4.fac2.01.blastresult Canis_familiaris.glob03.36.minQN4.fac2.01.blastresult Canis_familiaris.glob04.27.minQN4.fac2.01.blastresult Canis_familiaris.glob05.25.minQN4.fac2.01.blastresult Canis_familiaris.glob06.13.minQN4.fac2.01.blastresult Canis_familiaris.glob07.16.minQN4.fac2.01.blastresult Canis_familiaris.glob08.25.minQN4.fac2.02.blastresult Canis_familiaris.glob09.16.minQN4.fac2.02.blastresult Canis_familiaris.glob10.3.minQN4.fac2.01.blastresult Canis_familiaris.glob11.4.minQN4.fac2.01.blastresult Canis_familiaris.glob12.28.minQN4.fac2.01.blastresult Canis_familiaris.glob13.4.minQN4.fac2.02.blastresult Canis_familiaris.glob14.17.minQN4.fac2.01.blastresult Canis_familiaris.glob15.25.minQN4.fac2.03.blastresult Canis_familiaris.glob16.19.minQN4.fac2.01.blastresult Canis_familiaris.glob17.8.minQN4.fac2.01.blastresult Canis_familiaris.glob18.28.minQN4.fac2.02.blastresult Canis_familiaris.glob19.4.minQN4.fac2.03.blastresult Canis_familiaris.glob20.28.minQN4.fac2.03.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .........chromosome 24: 367 3992292 4931049 5035877 6 10 596 8.9 (marked for saving) ..........chromosome 13: 708 48408833 48495187 49574377 10 10 708 92.5 (marked for saving) .chromosome 8: 368 17044302 18094046 18157130 6 9 547 5.4 (marked for saving) ..chromosome 17: 533 51584708 51695160 51712289 9 15 870 1.4 (marked for saving) chromosome 19: 425 34104344 34153557 34153775 7 7 425 0 (marked for saving) ....chromosome 16: 627 17453507 18144623 18145258 9 9 627 0 (marked for saving) 487 21298113 21315867 22464547 8 9 541 98.4 (marked for saving) chromosome 28: 466 14313626 15464528 15464893 8 8 466 0 (marked for saving) 433 16338024 16806576 16870664 7 12 722 5.4 (marked for saving) 357 35648564 35675954 36809835 6 14 834 97.1 (marked for saving) chromosome 25: 733 14476883 14692875 14841823 9 19 1437 12.7 (marked for saving) 604 48868313 50029789 50030211 9 9 604 0 (marked for saving) 473 36459395 36773131 36804412 8 14 814 2.6 (marked for saving) chromosome 3: 523 72225178 73063711 73063956 9 9 523 0 (marked for saving) 359 69173996 69373126 69373452 6 6 359 0 (marked for saving) 303 63164976 63323660 63323878 5 5 303 0 (marked for saving) chromosome 4: 532 40466998 41194890 41195156 9 9 532 0 (marked for saving) 407 41295426 42438159 42438410 7 7 407 0 (marked for saving) 322 43389832 44014552 44014956 5 5 322 0 (marked for saving) chromosome 36: 1717 22914748 22929090 24017640 11 95 8521 93.3 (marked for saving) chromosome 9: 1409 27223257 27682151 28287891 11 102 8768 51.9 (marked for saving) 230 54940591 55049699 55050214 4 4 230 0 (marked for saving) chromosome 14: 1565 42274373 42451676 43376476 12 115 9990 79.2 (marked for saving) chromosome 27: 4320 3909605 4008479 5021721 14 109 12927 86.8 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 27 4320 3909605 4008479 5021721 14 109 12927 86.8 (saved) 36 1717 22914748 22929090 24017640 11 95 8521 93.3 (saved) 14 1565 42274373 42451676 43376476 12 115 9990 79.2 (saved) 9 1409 27223257 27682151 28287891 11 102 8768 51.9 (saved) 25 733 14476883 14692875 14841823 9 19 1437 12.7 (saved) 13 708 48408833 48495187 49574377 10 10 708 92.5 (saved) 16 627 17453507 18144623 18145258 9 9 627 0 (saved) 25 604 48868313 50029789 50030211 9 9 604 0 (saved) 17 533 51584708 51695160 51712289 9 15 870 1.4 (saved) 4 532 40466998 41194890 41195156 9 9 532 0 (saved) 3 523 72225178 73063711 73063956 9 9 523 0 (saved) 16 487 21298113 21315867 22464547 8 9 541 98.4 (saved) 25 473 36459395 36773131 36804412 8 14 814 2.6 (saved) 28 466 14313626 15464528 15464893 8 8 466 0 (saved) 28 433 16338024 16806576 16870664 7 12 722 5.4 (saved) 19 425 34104344 34153557 34153775 7 7 425 0 (saved) 4 407 41295426 42438159 42438410 7 7 407 0 (saved) 8 368 17044302 18094046 18157130 6 9 547 5.4 (saved) 24 367 3992292 4931049 5035877 6 10 596 8.9 (saved) 3 359 69173996 69373126 69373452 6 6 359 0 (saved) 28 357 35648564 35675954 36809835 6 14 834 97.1 4 322 43389832 44014552 44014956 5 5 322 0 3 303 63164976 63323660 63323878 5 5 303 0 9 230 54940591 55049699 55050214 4 4 230 0 global files summary: Canis_familiaris.glob01.27.minQN4.fac2.01.blastresult Canis_familiaris.glob02.36.minQN4.fac2.01.blastresult Canis_familiaris.glob03.14.minQN4.fac2.01.blastresult Canis_familiaris.glob04.9.minQN4.fac2.01.blastresult Canis_familiaris.glob05.25.minQN4.fac2.01.blastresult Canis_familiaris.glob06.13.minQN4.fac2.01.blastresult Canis_familiaris.glob07.16.minQN4.fac2.01.blastresult Canis_familiaris.glob08.25.minQN4.fac2.02.blastresult Canis_familiaris.glob09.17.minQN4.fac2.01.blastresult Canis_familiaris.glob10.4.minQN4.fac2.01.blastresult Canis_familiaris.glob11.3.minQN4.fac2.01.blastresult Canis_familiaris.glob12.16.minQN4.fac2.02.blastresult Canis_familiaris.glob13.25.minQN4.fac2.03.blastresult Canis_familiaris.glob14.28.minQN4.fac2.01.blastresult Canis_familiaris.glob15.28.minQN4.fac2.02.blastresult Canis_familiaris.glob16.19.minQN4.fac2.01.blastresult Canis_familiaris.glob17.4.minQN4.fac2.02.blastresult Canis_familiaris.glob18.8.minQN4.fac2.01.blastresult Canis_familiaris.glob19.24.minQN4.fac2.01.blastresult Canis_familiaris.glob20.3.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..............chromosome 6: 285 60218660 61029751 61029978 5 5 285 0 (marked for saving) chromosome 19: 426 33342424 34153563 34153775 7 7 426 0 (marked for saving) chromosome 13: 730 48759238 49574018 49574401 10 10 730 0 (marked for saving) chromosome 24: 486 4221982 4930899 5035877 8 14 838 12.8 (marked for saving) chromosome 17: 539 51226504 51695196 51712322 9 16 932 2.1 (marked for saving) chromosome 16: 701 18071460 18144608 18145234 10 10 701 0 (marked for saving) 497 21190365 21315807 21316403 8 8 497 0 (marked for saving) chromosome 8: 549 17938147 18094046 18157139 9 15 892 7.7 (marked for saving) chromosome 3: 639 68640276 69282904 69373467 10 10 639 11.1 (marked for saving) 600 72252498 73063714 73063974 10 10 600 0 (marked for saving) 304 62585931 63323627 63323875 5 5 304 0 (marked for saving) chromosome 4: 631 40470209 40898020 41195156 10 10 631 36.4 (marked for saving) 531 42353783 42437955 42438422 9 9 531 0 (marked for saving) 380 43919351 44014501 44014923 6 6 380 0 (marked for saving) chromosome 28: 554 16398507 16806477 16870844 9 15 895 7.8 (marked for saving) 532 14763630 15464513 15464902 9 9 532 0 (marked for saving) 432 35442174 35675495 35688378 7 12 733 1.5 (marked for saving) 227 35996646 36809677 36809835 4 4 227 0 (marked for saving) chromosome 25: 824 14220070 14692875 14842159 10 21 1612 18.3 (marked for saving) 681 49217038 50029771 50030214 10 10 681 0 (marked for saving) 544 36272563 36773071 36804508 9 17 1006 3.8 (marked for saving) chromosome 27: 1223 3547712 4211935 4324533 10 84 6975 13.8 (marked for saving) chromosome 36: 3101 22347810 22759346 23161054 12 111 11832 49.2 (marked for saving) chromosome 9: 1330 28073472 28119456 28287807 10 104 8701 20.6 (marked for saving) 413 54235581 55049762 55050370 7 7 413 0 (marked for saving) chromosome 14: 1546 42565601 43223946 43377670 10 116 10123 18.8 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 36 3101 22347810 22759346 23161054 12 111 11832 49.2 (saved) 14 1546 42565601 43223946 43377670 10 116 10123 18.8 (saved) 9 1330 28073472 28119456 28287807 10 104 8701 20.6 (saved) 27 1223 3547712 4211935 4324533 10 84 6975 13.8 (saved) 25 824 14220070 14692875 14842159 10 21 1612 18.3 (saved) 13 730 48759238 49574018 49574401 10 10 730 0 (saved) 16 701 18071460 18144608 18145234 10 10 701 0 (saved) 25 681 49217038 50029771 50030214 10 10 681 0 (saved) 3 639 68640276 69282904 69373467 10 10 639 11.1 (saved) 4 631 40470209 40898020 41195156 10 10 631 36.4 (saved) 3 600 72252498 73063714 73063974 10 10 600 0 (saved) 28 554 16398507 16806477 16870844 9 15 895 7.8 (saved) 8 549 17938147 18094046 18157139 9 15 892 7.7 (saved) 25 544 36272563 36773071 36804508 9 17 1006 3.8 (saved) 17 539 51226504 51695196 51712322 9 16 932 2.1 (saved) 28 532 14763630 15464513 15464902 9 9 532 0 (saved) 4 531 42353783 42437955 42438422 9 9 531 0 (saved) 16 497 21190365 21315807 21316403 8 8 497 0 (saved) 24 486 4221982 4930899 5035877 8 14 838 12.8 (saved) 28 432 35442174 35675495 35688378 7 12 733 1.5 (saved) 19 426 33342424 34153563 34153775 7 7 426 0 9 413 54235581 55049762 55050370 7 7 413 0 4 380 43919351 44014501 44014923 6 6 380 0 3 304 62585931 63323627 63323875 5 5 304 0 6 285 60218660 61029751 61029978 5 5 285 0 28 227 35996646 36809677 36809835 4 4 227 0 global files summary: Canis_familiaris.glob01.36.minQN4.fac2.01.blastresult Canis_familiaris.glob02.14.minQN4.fac2.01.blastresult Canis_familiaris.glob03.9.minQN4.fac2.01.blastresult Canis_familiaris.glob04.27.minQN4.fac2.01.blastresult Canis_familiaris.glob05.25.minQN4.fac2.01.blastresult Canis_familiaris.glob06.13.minQN4.fac2.01.blastresult Canis_familiaris.glob07.16.minQN4.fac2.01.blastresult Canis_familiaris.glob08.25.minQN4.fac2.02.blastresult Canis_familiaris.glob09.3.minQN4.fac2.01.blastresult Canis_familiaris.glob10.4.minQN4.fac2.01.blastresult Canis_familiaris.glob11.3.minQN4.fac2.02.blastresult Canis_familiaris.glob12.28.minQN4.fac2.01.blastresult Canis_familiaris.glob13.8.minQN4.fac2.01.blastresult Canis_familiaris.glob14.25.minQN4.fac2.03.blastresult Canis_familiaris.glob15.17.minQN4.fac2.01.blastresult Canis_familiaris.glob16.28.minQN4.fac2.02.blastresult Canis_familiaris.glob17.4.minQN4.fac2.02.blastresult Canis_familiaris.glob18.16.minQN4.fac2.02.blastresult Canis_familiaris.glob19.24.minQN4.fac2.01.blastresult Canis_familiaris.glob20.28.minQN4.fac2.03.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..................chromosome contig_5833: 221 1 14656 14814 4 4 221 0 (marked for saving) chromosome contig_5248: 225 1 11923 12111 4 4 225 0 (marked for saving) .chromosome contig_411: 227 1 134774 134950 4 4 227 0 (marked for saving) ..chromosome contig_6646: 276 1 68833 68976 5 5 276 0 (marked for saving) chromosome contig_12714: 268 1 32941 33096 5 5 268 0 (marked for saving) chromosome scaffold_132: 268 1 77817 77972 5 5 268 0 (marked for saving) chromosome scaffold_1455: 342 1 1168 1347 6 6 342 0 (marked for saving) chromosome scaffold_197: 341 1 58624 58962 6 6 341 0 (marked for saving) chromosome contig_13639: 341 1 10730 11068 6 6 341 0 (marked for saving) chromosome groupII: 288 5620454 5679679 6242525 5 5 288 28.3 (marked for saving) chromosome contig_16309: 342 1 1168 1347 6 6 342 0 (marked for saving) chromosome contig_6543: 557 1 29434 29790 9 9 557 0 (marked for saving) chromosome contig_6545: 559 1 52 414 9 9 559 0 (marked for saving) chromosome contig_5857: 551 1 10613 10984 9 9 551 0 (marked for saving) chromosome groupXVIII: 507 10565275 12540483 12540767 9 9 507 0 (marked for saving) chromosome groupXIV: 526 9497754 11473049 11473294 9 9 526 0 (marked for saving) chromosome contig_8517: 507 1 98 382 9 9 507 0 (marked for saving) chromosome contig_4561: 526 1 99866 100111 9 9 526 0 (marked for saving) chromosome contig_8795: 589 1 44926 45336 10 10 589 0 (marked for saving) chromosome contig_8830: 567 1 12570 12809 10 10 567 0 (marked for saving) chromosome contig_8797: 615 1 10495 10767 10 10 615 0 (marked for saving) chromosome contig_6297: 621 1 72712 73296 10 10 621 0 (marked for saving) chromosome contig_5065: 715 1 44334 44888 11 11 715 0 (marked for saving) chromosome contig_7821: 756 1 127984 128670 11 11 756 0 (marked for saving) chromosome contig_3195: 645 1 62220 62516 11 11 645 0 (marked for saving) chromosome contig_5575: 660 1 16152 16373 11 11 660 0 (marked for saving) chromosome contig_5828: 701 1 33515 33901 11 11 701 0 (marked for saving) chromosome contig_6542: 645 1 36796 37236 11 11 645 0 (marked for saving) chromosome contig_10719: 684 1 4198 4500 11 11 684 0 (marked for saving) chromosome contig_10998: 932 1 2277 2651 12 12 932 0 (marked for saving) chromosome contig_2642: 931 1 90913 91329 12 12 931 0 (marked for saving) chromosome contig_5780: 1028 1 36080 36445 12 12 1028 0 (marked for saving) chromosome contig_9904: 868 1 44129 44572 12 12 868 0 (marked for saving) chromosome contig_2644: 1065 1 2418 2735 12 12 1065 0 (marked for saving) chromosome contig_3155: 747 1 16369 16752 12 12 747 0 (marked for saving) chromosome contig_5128: 723 1 1098 1532 12 12 723 0 (marked for saving) chromosome contig_7538: 753 1 43956 44333 12 12 753 0 (marked for saving) chromosome contig_689: 924 1 43990 44325 12 12 924 0 (marked for saving) chromosome contig_702: 726 1 61050 61388 12 12 726 0 (marked for saving) chromosome contig_4903: 1077 1 10680 10931 12 12 1077 0 (marked for saving) chromosome contig_6987: 741 1 5833 6156 12 12 741 0 (marked for saving) chromosome contig_6056: 745 1 115473 115877 12 12 745 0 (marked for saving) chromosome contig_12790: 849 1 5 232 12 12 849 0 (marked for saving) chromosome contig_9873: 1134 1 1938 4245 12 13 1204 0.1 (marked for saving) chromosome contig_2646: 827 1 8974 11713 12 13 955 0.1 (marked for saving) chromosome contig_4905: 1054 1 15859 22506 12 15 1238 0.3 (marked for saving) chromosome contig_9879: 969 1 31347 75984 12 17 1347 2.2 (marked for saving) chromosome groupI: 741 21561445 23542017 23542340 12 12 741 0 (marked for saving) chromosome contig_5064: 685 1 13839 24358 11 20 1229 0.5 (marked for saving) chromosome contig_4019: 666 1 429 21489 11 20 1188 1 (marked for saving) chromosome contig_9186: 676 1 146929 149649 11 20 1192 0.1 (marked for saving) chromosome contig_3191: 673 1 68351 71405 11 21 1235 0.1 (marked for saving) chromosome groupVIII: 932 16688075 18664094 18664468 12 12 932 0 (marked for saving) 567 1728086 2601400 2601639 10 10 567 0 (marked for saving) chromosome contig_3830: 728 1 11918 20626 12 22 1304 0.4 (marked for saving) chromosome contig_1879: 779 1 44416 49767 12 23 1415 0.2 (marked for saving) chromosome groupXIII: 779 9899271 11874503 11879854 12 23 1415 0.2 (marked for saving) chromosome contig_2645: 977 1 7501 19677 12 23 1666 0.6 (marked for saving) chromosome contig_5939: 723 1 228771 295935 12 23 1351 3.3 (marked for saving) chromosome contig_5115: 739 1 123117 127744 12 23 1379 0.2 (marked for saving) chromosome groupIII: 868 14643646 16625542 16625985 12 12 868 0 (marked for saving) 712 2780881 2879940 4273755 12 12 712 70.2 (marked for saving) chromosome contig_9877: 1223 1 4209 26330 12 25 2249 1.1 (marked for saving) chromosome groupXVII: 931 39709 612703 614498 12 13 1054 0 (marked for saving) 745 5817223 7799832 7800236 12 12 745 0 (marked for saving) chromosome contig_9874: 1205 1 2478 8416 12 26 2472 0.2 (marked for saving) chromosome groupXXI: 1028 7111008 7565312 9086851 12 27 1950 76.6 (marked for saving) chromosome contig_9872: 1367 1 61560 92599 12 39 3505 1.5 (marked for saving) chromosome contig_2345: 1349 1 57 24078 12 40 3547 1.2 (marked for saving) chromosome contig_6417: 1329 1 4655 49226 13 43 3571 2.2 (marked for saving) chromosome groupXV: 728 8954155 10926222 10934930 12 22 1304 0.4 (marked for saving) 666 2650510 2667590 3896947 11 21 1243 61.9 (marked for saving) chromosome groupVII: 924 20869252 22290264 22854443 12 24 1650 28.4 (marked for saving) 676 4033060 4449648 4452368 11 20 1192 0.1 (marked for saving) chromosome groupIX: 747 11834517 13815571 13815954 12 12 747 0 (marked for saving) 685 10127073 10902363 11288771 11 32 1880 19.4 (marked for saving) chromosome groupV: 1329 2630656 4569137 4613708 13 43 3571 2.2 (marked for saving) 621 863650 1107013 1107597 10 10 621 0 (marked for saving) chromosome contig_2643: 1339 1 4751 46955 12 74 6590 2.1 (marked for saving) chromosome contig_1095: 1794 1 18240 57714 14 75 6598 1.9 (marked for saving) chromosome groupXX: 1794 9206317 9702480 9741954 14 75 6598 1.9 (marked for saving) chromosome contig_5303: 1764 1 229470 277218 12 79 7137 2.4 (marked for saving) chromosome contig_2344: 2017 1 19832 66183 12 89 8877 2.3 (marked for saving) chromosome groupIV: 756 20697796 22675108 22675794 11 11 756 0 (marked for saving) 723 13242619 13906006 13973170 12 23 1351 3.3 (marked for saving) 691 2412262 3153866 3242863 11 29 1761 4.4 (marked for saving) 684 595621 955441 955743 11 11 684 0 (marked for saving) 607 9083206 9248432 10893292 10 12 711 82.8 (marked for saving) 276 5152114 5598675 5598818 5 5 276 0 (marked for saving) chromosome groupXVI: 1764 9083206 9792262 9840010 12 79 7137 2.4 (marked for saving) 753 39709 387970 388347 12 12 753 0 (marked for saving) 225 12885247 14861701 14861889 4 4 225 0 (marked for saving) chromosome groupVI: 1224 14204025 16155941 16182587 12 27 2315 1.3 (marked for saving) 765 7741548 8021695 8825785 12 35 2102 40.5 (marked for saving) 744 2013669 2023367 3950449 12 24 1363 97 (marked for saving) 726 11623005 11731459 11852562 11 31 1944 6 (marked for saving) chromosome groupXI: 1829 1171387 1481396 1740602 12 120 10777 13 (marked for saving) chromosome groupXII: 1502 9689984 11575429 11674083 12 134 11207 4.9 (marked for saving) chromosome groupX: 2708 7989347 9855280 9969018 13 137 13349 5.7 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange groupX 2708 7989347 9855280 9969018 13 137 13349 5.7 (saved) contig_2344 2017 1 19832 66183 12 89 8877 2.3 (saved) groupXI 1829 1171387 1481396 1740602 12 120 10777 13 (saved) contig_1095 1794 1 18240 57714 14 75 6598 1.9 (saved) groupXX 1794 9206317 9702480 9741954 14 75 6598 1.9 (saved) contig_5303 1764 1 229470 277218 12 79 7137 2.4 (saved) groupXVI 1764 9083206 9792262 9840010 12 79 7137 2.4 (saved) groupXII 1502 9689984 11575429 11674083 12 134 11207 4.9 (saved) contig_9872 1367 1 61560 92599 12 39 3505 1.5 (saved) contig_2345 1349 1 57 24078 12 40 3547 1.2 (saved) contig_2643 1339 1 4751 46955 12 74 6590 2.1 (saved) contig_6417 1329 1 4655 49226 13 43 3571 2.2 (saved) groupV 1329 2630656 4569137 4613708 13 43 3571 2.2 (saved) groupVI 1224 14204025 16155941 16182587 12 27 2315 1.3 (saved) contig_9877 1223 1 4209 26330 12 25 2249 1.1 (saved) contig_9874 1205 1 2478 8416 12 26 2472 0.2 (saved) contig_9873 1134 1 1938 4245 12 13 1204 0.1 (saved) contig_4903 1077 1 10680 10931 12 12 1077 0 (saved) contig_2644 1065 1 2418 2735 12 12 1065 0 (saved) contig_4905 1054 1 15859 22506 12 15 1238 0.3 (saved) contig_5780 1028 1 36080 36445 12 12 1028 0 groupXXI 1028 7111008 7565312 9086851 12 27 1950 76.6 contig_2645 977 1 7501 19677 12 23 1666 0.6 contig_9879 969 1 31347 75984 12 17 1347 2.2 contig_10998 932 1 2277 2651 12 12 932 0 groupVIII 932 16688075 18664094 18664468 12 12 932 0 contig_2642 931 1 90913 91329 12 12 931 0 groupXVII 931 39709 612703 614498 12 13 1054 0 contig_689 924 1 43990 44325 12 12 924 0 groupVII 924 20869252 22290264 22854443 12 24 1650 28.4 contig_9904 868 1 44129 44572 12 12 868 0 groupIII 868 14643646 16625542 16625985 12 12 868 0 contig_12790 849 1 5 232 12 12 849 0 contig_2646 827 1 8974 11713 12 13 955 0.1 contig_1879 779 1 44416 49767 12 23 1415 0.2 groupXIII 779 9899271 11874503 11879854 12 23 1415 0.2 groupVI 765 7741548 8021695 8825785 12 35 2102 40.5 contig_7821 756 1 127984 128670 11 11 756 0 groupIV 756 20697796 22675108 22675794 11 11 756 0 contig_7538 753 1 43956 44333 12 12 753 0 groupXVI 753 39709 387970 388347 12 12 753 0 contig_3155 747 1 16369 16752 12 12 747 0 groupIX 747 11834517 13815571 13815954 12 12 747 0 contig_6056 745 1 115473 115877 12 12 745 0 groupXVII 745 5817223 7799832 7800236 12 12 745 0 groupVI 744 2013669 2023367 3950449 12 24 1363 97 contig_6987 741 1 5833 6156 12 12 741 0 groupI 741 21561445 23542017 23542340 12 12 741 0 contig_5115 739 1 123117 127744 12 23 1379 0.2 contig_3830 728 1 11918 20626 12 22 1304 0.4 groupXV 728 8954155 10926222 10934930 12 22 1304 0.4 contig_702 726 1 61050 61388 12 12 726 0 groupVI 726 11623005 11731459 11852562 11 31 1944 6 contig_5128 723 1 1098 1532 12 12 723 0 contig_5939 723 1 228771 295935 12 23 1351 3.3 groupIV 723 13242619 13906006 13973170 12 23 1351 3.3 contig_5065 715 1 44334 44888 11 11 715 0 groupIII 712 2780881 2879940 4273755 12 12 712 70.2 contig_5828 701 1 33515 33901 11 11 701 0 groupIV 691 2412262 3153866 3242863 11 29 1761 4.4 contig_5064 685 1 13839 24358 11 20 1229 0.5 groupIX 685 10127073 10902363 11288771 11 32 1880 19.4 contig_10719 684 1 4198 4500 11 11 684 0 groupIV 684 595621 955441 955743 11 11 684 0 contig_9186 676 1 146929 149649 11 20 1192 0.1 groupVII 676 4033060 4449648 4452368 11 20 1192 0.1 contig_3191 673 1 68351 71405 11 21 1235 0.1 contig_4019 666 1 429 21489 11 20 1188 1 groupXV 666 2650510 2667590 3896947 11 21 1243 61.9 contig_5575 660 1 16152 16373 11 11 660 0 contig_3195 645 1 62220 62516 11 11 645 0 contig_6542 645 1 36796 37236 11 11 645 0 contig_6297 621 1 72712 73296 10 10 621 0 groupV 621 863650 1107013 1107597 10 10 621 0 contig_8797 615 1 10495 10767 10 10 615 0 groupIV 607 9083206 9248432 10893292 10 12 711 82.8 contig_8795 589 1 44926 45336 10 10 589 0 contig_8830 567 1 12570 12809 10 10 567 0 groupVIII 567 1728086 2601400 2601639 10 10 567 0 contig_6545 559 1 52 414 9 9 559 0 contig_6543 557 1 29434 29790 9 9 557 0 contig_5857 551 1 10613 10984 9 9 551 0 groupXIV 526 9497754 11473049 11473294 9 9 526 0 contig_4561 526 1 99866 100111 9 9 526 0 groupXVIII 507 10565275 12540483 12540767 9 9 507 0 contig_8517 507 1 98 382 9 9 507 0 scaffold_1455 342 1 1168 1347 6 6 342 0 contig_16309 342 1 1168 1347 6 6 342 0 scaffold_197 341 1 58624 58962 6 6 341 0 contig_13639 341 1 10730 11068 6 6 341 0 groupII 288 5620454 5679679 6242525 5 5 288 28.3 contig_6646 276 1 68833 68976 5 5 276 0 groupIV 276 5152114 5598675 5598818 5 5 276 0 contig_12714 268 1 32941 33096 5 5 268 0 scaffold_132 268 1 77817 77972 5 5 268 0 contig_411 227 1 134774 134950 4 4 227 0 contig_5248 225 1 11923 12111 4 4 225 0 groupXVI 225 12885247 14861701 14861889 4 4 225 0 contig_5833 221 1 14656 14814 4 4 221 0 global files summary: Gasterosteus_aculeatus.glob01.groupX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob02.contig_2344.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob03.groupXI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob04.contig_1095.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob05.groupXX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob06.contig_5303.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob07.groupXVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob08.groupXII.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob09.contig_9872.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob10.contig_2345.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob11.contig_2643.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob12.contig_6417.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob13.groupV.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob14.groupVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob15.contig_9877.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob16.contig_9874.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob17.contig_9873.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob18.contig_4903.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob19.contig_2644.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob20.contig_4905.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ............chromosome contig_5248: 221 1 11923 12099 4 4 221 0 (marked for saving) chromosome contig_411: 220 1 134774 134965 4 4 220 0 (marked for saving) chromosome scaffold_1455: 279 1 1186 1347 5 5 279 0 (marked for saving) chromosome scaffold_197: 277 1 58750 58962 5 5 277 0 (marked for saving) chromosome contig_6646: 271 1 68833 68976 5 5 271 0 (marked for saving) chromosome contig_13639: 277 1 10856 11068 5 5 277 0 (marked for saving) chromosome groupII: 220 5814138 6242334 6242525 4 4 220 0 (marked for saving) chromosome contig_16309: 279 1 1186 1347 5 5 279 0 (marked for saving) chromosome contig_8830: 338 1 12582 12809 6 6 338 0 (marked for saving) chromosome groupXVIII: 396 11968544 12540507 12540764 7 7 396 0 (marked for saving) chromosome groupXIV: 391 10901017 11473049 11473267 7 7 391 0 (marked for saving) chromosome contig_8517: 396 1 101 358 7 7 396 0 (marked for saving) chromosome contig_4561: 391 1 99893 100111 7 7 391 0 (marked for saving) chromosome contig_6543: 509 1 29458 29769 8 8 509 0 (marked for saving) chromosome contig_6545: 507 1 73 393 8 8 507 0 (marked for saving) chromosome contig_5857: 495 1 10742 10996 8 8 495 0 (marked for saving) chromosome contig_8797: 504 1 10486 10767 8 8 504 0 (marked for saving) chromosome contig_6297: 507 1 72742 73290 8 8 507 0 (marked for saving) chromosome contig_5065: 598 1 44409 44888 9 9 598 0 (marked for saving) chromosome contig_8795: 530 1 44926 45168 9 9 530 0 (marked for saving) chromosome contig_7821: 609 1 128071 128691 9 9 609 0.1 (marked for saving) chromosome contig_3195: 531 1 62256 62501 9 9 531 0 (marked for saving) chromosome contig_5575: 546 1 16131 16364 9 9 546 0 (marked for saving) chromosome contig_6542: 532 1 36778 37050 9 9 532 0 (marked for saving) chromosome contig_10719: 569 1 4108 4452 9 9 569 0 (marked for saving) chromosome contig_10998: 795 1 2277 2639 10 10 795 0 (marked for saving) chromosome contig_2642: 787 1 90925 91311 10 10 787 0 (marked for saving) chromosome contig_5828: 617 1 33518 33772 10 10 617 0 (marked for saving) chromosome contig_5780: 871 1 36074 36442 10 10 871 0 (marked for saving) chromosome contig_9904: 735 1 44099 44572 10 10 735 0 (marked for saving) chromosome contig_2644: 833 1 2433 2702 10 10 833 0 (marked for saving) chromosome contig_5128: 605 1 1086 1481 10 10 605 0 (marked for saving) chromosome contig_3155: 602 1 16357 16788 10 10 602 0 (marked for saving) chromosome contig_7538: 622 1 44052 44330 10 10 622 0 (marked for saving) chromosome contig_689: 790 1 43795 44307 10 10 790 0 (marked for saving) chromosome contig_702: 592 1 61032 61355 10 10 592 0 (marked for saving) chromosome groupI: 609 22970093 23542017 23542352 10 10 609 0 (marked for saving) chromosome contig_4903: 950 1 10686 10931 10 10 950 0 (marked for saving) chromosome contig_6987: 609 1 5821 6156 10 10 609 0 (marked for saving) chromosome contig_6056: 604 1 115584 115886 10 10 604 0 (marked for saving) chromosome contig_12790: 700 1 8 226 10 10 700 0 (marked for saving) chromosome contig_9873: 1018 1 2007 4245 10 11 1150 0.3 (marked for saving) chromosome contig_4905: 858 1 15856 22506 10 11 913 1.1 (marked for saving) chromosome contig_2646: 678 1 8974 11623 10 11 793 0.4 (marked for saving) chromosome contig_9879: 742 1 31353 73306 10 12 922 7.2 (marked for saving) chromosome contig_3191: 504 1 68354 71324 8 15 903 0.5 (marked for saving) chromosome contig_4019: 527 1 522 21492 9 16 927 3.6 (marked for saving) chromosome contig_9186: 503 1 147031 149643 8 16 962 0.4 (marked for saving) chromosome groupVIII: 795 18091912 18664094 18664456 10 10 795 0 (marked for saving) 338 2124360 2601412 2601639 6 6 338 0 (marked for saving) chromosome contig_3830: 593 1 11942 20626 10 17 990 1.5 (marked for saving) chromosome contig_5064: 549 1 14079 24358 9 18 1080 1.7 (marked for saving) chromosome contig_1879: 653 1 44458 49740 10 19 1174 0.9 (marked for saving) chromosome groupXIII: 653 11305410 11874530 11879812 10 19 1174 0.9 (marked for saving) chromosome contig_2645: 727 1 7507 19677 10 19 1214 2.1 (marked for saving) chromosome groupIII: 735 16051076 16625542 16626015 10 10 735 0 (marked for saving) 546 3954620 4273543 4273776 9 9 546 0 (marked for saving) chromosome contig_5115: 610 1 123132 127735 10 20 1189 0.8 (marked for saving) chromosome contig_9877: 1056 1 4239 26330 10 21 2016 3.8 (marked for saving) chromosome groupXVII: 740 317325 612778 614492 10 11 863 0.2 (marked for saving) 604 7225477 7799943 7800245 10 10 604 0 (marked for saving) chromosome contig_5939: 613 1 228613 296022 10 21 1208 11.7 (marked for saving) chromosome contig_9874: 1093 1 2478 8413 10 21 2206 1 (marked for saving) chromosome groupXXI: 871 7367328 7565306 7565674 10 10 871 0 (marked for saving) 617 8511976 8945406 9086851 10 13 781 24.5 (marked for saving) chromosome contig_2345: 898 1 69 24000 10 32 2453 4.1 (marked for saving) chromosome contig_6417: 1127 1 33864 49226 10 33 3036 2.6 (marked for saving) chromosome contig_9872: 1274 1 61560 92599 10 33 3183 5.3 (marked for saving) chromosome groupIX: 602 13243776 13815535 13815966 10 10 602 0 (marked for saving) 565 10885456 10902378 11288768 9 24 1434 67.1 (marked for saving) chromosome groupXV: 593 10361874 10926222 10934906 10 17 990 1.5 (marked for saving) 527 3649290 3875884 3896854 9 16 927 3.6 (marked for saving) chromosome groupVII: 790 22281308 22290069 22854410 10 20 1382 98.1 (marked for saving) 503 4156756 4449750 4452362 8 16 962 0.4 (marked for saving) chromosome groupV: 1254 4052569 4094325 4626033 11 36 3343 92.4 (marked for saving) 507 978125 1107043 1107591 8 8 507 0 (marked for saving) chromosome contig_1095: 1068 1 26429 50116 10 52 4223 4.1 (marked for saving) chromosome groupXX: 1068 9633708 9710669 9734356 10 52 4223 4.1 (marked for saving) chromosome contig_2643: 1183 1 4961 46955 10 64 5963 7.3 (marked for saving) chromosome contig_5303: 1308 1 230508 277218 10 65 5548 8.1 (marked for saving) chromosome contig_2344: 1498 1 19835 66189 10 75 7336 8 (marked for saving) chromosome groupXVI: 1308 9755393 9792262 9838972 10 65 5548 8.1 (marked for saving) 622 161057 388066 388344 10 10 622 0 (marked for saving) 221 14287969 14861713 14861889 4 4 221 0 (marked for saving) chromosome groupIV: 613 13503823 13905848 13973257 10 21 1208 11.7 (marked for saving) 609 22103063 22675195 22675815 9 9 609 0.1 (marked for saving) 572 3121463 3153848 3242842 9 25 1548 15.4 (marked for saving) 569 685491 955489 955833 9 9 569 0 (marked for saving) 495 9192699 9572283 9572537 8 8 495 0 (marked for saving) 271 5284215 5598675 5598818 5 5 271 0 (marked for saving) chromosome groupVI: 1019 15608459 16155941 16182581 10 21 1863 4.6 (marked for saving) 610 8763579 8821167 8825770 10 20 1189 0.8 (marked for saving) 605 7498139 8021746 8022141 10 10 605 0 (marked for saving) 598 11679843 11731459 11852322 9 27 1678 21 (marked for saving) 567 3402715 3920067 3950449 9 17 1034 5.2 (marked for saving) chromosome groupXI: 1697 1168057 1484074 1740602 10 98 9477 44.6 (marked for saving) chromosome groupX: 1580 9361065 9855283 9935922 10 110 9954 14 (marked for saving) chromosome groupXII: 1256 11101685 11575519 11674071 10 114 9590 17.1 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange groupXI 1697 1168057 1484074 1740602 10 98 9477 44.6 (saved) groupX 1580 9361065 9855283 9935922 10 110 9954 14 (saved) contig_2344 1498 1 19835 66189 10 75 7336 8 (saved) contig_5303 1308 1 230508 277218 10 65 5548 8.1 (saved) groupXVI 1308 9755393 9792262 9838972 10 65 5548 8.1 (saved) contig_9872 1274 1 61560 92599 10 33 3183 5.3 (saved) groupXII 1256 11101685 11575519 11674071 10 114 9590 17.1 (saved) groupV 1254 4052569 4094325 4626033 11 36 3343 92.4 (saved) contig_2643 1183 1 4961 46955 10 64 5963 7.3 (saved) contig_6417 1127 1 33864 49226 10 33 3036 2.6 (saved) contig_9874 1093 1 2478 8413 10 21 2206 1 (saved) contig_1095 1068 1 26429 50116 10 52 4223 4.1 (saved) groupXX 1068 9633708 9710669 9734356 10 52 4223 4.1 (saved) contig_9877 1056 1 4239 26330 10 21 2016 3.8 (saved) groupVI 1019 15608459 16155941 16182581 10 21 1863 4.6 (saved) contig_9873 1018 1 2007 4245 10 11 1150 0.3 (saved) contig_4903 950 1 10686 10931 10 10 950 0 (saved) contig_2345 898 1 69 24000 10 32 2453 4.1 (saved) contig_5780 871 1 36074 36442 10 10 871 0 (saved) groupXXI 871 7367328 7565306 7565674 10 10 871 0 (saved) contig_4905 858 1 15856 22506 10 11 913 1.1 contig_2644 833 1 2433 2702 10 10 833 0 contig_10998 795 1 2277 2639 10 10 795 0 groupVIII 795 18091912 18664094 18664456 10 10 795 0 contig_689 790 1 43795 44307 10 10 790 0 groupVII 790 22281308 22290069 22854410 10 20 1382 98.1 contig_2642 787 1 90925 91311 10 10 787 0 contig_9879 742 1 31353 73306 10 12 922 7.2 groupXVII 740 317325 612778 614492 10 11 863 0.2 contig_9904 735 1 44099 44572 10 10 735 0 groupIII 735 16051076 16625542 16626015 10 10 735 0 contig_2645 727 1 7507 19677 10 19 1214 2.1 contig_12790 700 1 8 226 10 10 700 0 contig_2646 678 1 8974 11623 10 11 793 0.4 contig_1879 653 1 44458 49740 10 19 1174 0.9 groupXIII 653 11305410 11874530 11879812 10 19 1174 0.9 contig_7538 622 1 44052 44330 10 10 622 0 groupXVI 622 161057 388066 388344 10 10 622 0 contig_5828 617 1 33518 33772 10 10 617 0 groupXXI 617 8511976 8945406 9086851 10 13 781 24.5 contig_5939 613 1 228613 296022 10 21 1208 11.7 groupIV 613 13503823 13905848 13973257 10 21 1208 11.7 contig_5115 610 1 123132 127735 10 20 1189 0.8 groupVI 610 8763579 8821167 8825770 10 20 1189 0.8 contig_7821 609 1 128071 128691 9 9 609 0.1 groupI 609 22970093 23542017 23542352 10 10 609 0 contig_6987 609 1 5821 6156 10 10 609 0 groupIV 609 22103063 22675195 22675815 9 9 609 0.1 contig_5128 605 1 1086 1481 10 10 605 0 groupVI 605 7498139 8021746 8022141 10 10 605 0 contig_6056 604 1 115584 115886 10 10 604 0 groupXVII 604 7225477 7799943 7800245 10 10 604 0 contig_3155 602 1 16357 16788 10 10 602 0 groupIX 602 13243776 13815535 13815966 10 10 602 0 contig_5065 598 1 44409 44888 9 9 598 0 groupVI 598 11679843 11731459 11852322 9 27 1678 21 contig_3830 593 1 11942 20626 10 17 990 1.5 groupXV 593 10361874 10926222 10934906 10 17 990 1.5 contig_702 592 1 61032 61355 10 10 592 0 groupIV 572 3121463 3153848 3242842 9 25 1548 15.4 contig_10719 569 1 4108 4452 9 9 569 0 groupIV 569 685491 955489 955833 9 9 569 0 groupVI 567 3402715 3920067 3950449 9 17 1034 5.2 groupIX 565 10885456 10902378 11288768 9 24 1434 67.1 contig_5064 549 1 14079 24358 9 18 1080 1.7 contig_5575 546 1 16131 16364 9 9 546 0 groupIII 546 3954620 4273543 4273776 9 9 546 0 contig_6542 532 1 36778 37050 9 9 532 0 contig_3195 531 1 62256 62501 9 9 531 0 contig_8795 530 1 44926 45168 9 9 530 0 contig_4019 527 1 522 21492 9 16 927 3.6 groupXV 527 3649290 3875884 3896854 9 16 927 3.6 contig_6543 509 1 29458 29769 8 8 509 0 contig_6545 507 1 73 393 8 8 507 0 contig_6297 507 1 72742 73290 8 8 507 0 groupV 507 978125 1107043 1107591 8 8 507 0 contig_8797 504 1 10486 10767 8 8 504 0 contig_3191 504 1 68354 71324 8 15 903 0.5 contig_9186 503 1 147031 149643 8 16 962 0.4 groupVII 503 4156756 4449750 4452362 8 16 962 0.4 contig_5857 495 1 10742 10996 8 8 495 0 groupIV 495 9192699 9572283 9572537 8 8 495 0 groupXVIII 396 11968544 12540507 12540764 7 7 396 0 contig_8517 396 1 101 358 7 7 396 0 groupXIV 391 10901017 11473049 11473267 7 7 391 0 contig_4561 391 1 99893 100111 7 7 391 0 contig_8830 338 1 12582 12809 6 6 338 0 groupVIII 338 2124360 2601412 2601639 6 6 338 0 scaffold_1455 279 1 1186 1347 5 5 279 0 contig_16309 279 1 1186 1347 5 5 279 0 scaffold_197 277 1 58750 58962 5 5 277 0 contig_13639 277 1 10856 11068 5 5 277 0 contig_6646 271 1 68833 68976 5 5 271 0 groupIV 271 5284215 5598675 5598818 5 5 271 0 contig_5248 221 1 11923 12099 4 4 221 0 groupXVI 221 14287969 14861713 14861889 4 4 221 0 contig_411 220 1 134774 134965 4 4 220 0 groupII 220 5814138 6242334 6242525 4 4 220 0 global files summary: Gasterosteus_aculeatus.glob01.groupXI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob02.groupX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob03.contig_2344.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob04.contig_5303.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob05.groupXVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob06.contig_9872.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob07.groupXII.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob08.groupV.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob09.contig_2643.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob10.contig_6417.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob11.contig_9874.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob12.contig_1095.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob13.groupXX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob14.contig_9877.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob15.groupVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob16.contig_9873.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob17.contig_4903.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob18.contig_2345.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob19.contig_5780.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob20.groupXXI.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .........................................................chromosome contig_4561: 223 1 99866 100111 4 4 223 0 (marked for saving) ......chromosome contig_6543: 365 1 29506 29790 6 6 365 0 (marked for saving) chromosome contig_6545: 369 1 64 414 6 6 369 0 (marked for saving) chromosome contig_5857: 360 1 10727 10945 6 6 360 0 (marked for saving) chromosome groupXIV: 223 10308679 11473049 11473294 4 4 223 0 (marked for saving) chromosome contig_8517: 336 1 95 376 6 6 336 0 (marked for saving) chromosome contig_5065: 431 1 44499 44834 7 7 431 0 (marked for saving) chromosome contig_8797: 407 1 10564 10767 7 7 407 0 (marked for saving) chromosome contig_7821: 433 1 128221 128661 7 7 433 0 (marked for saving) chromosome contig_8795: 468 1 44893 45210 8 8 468 0 (marked for saving) chromosome contig_3195: 468 1 62247 62519 8 8 468 0 (marked for saving) chromosome contig_10719: 462 1 4189 4413 8 8 462 0 (marked for saving) chromosome contig_5828: 485 1 33515 33892 8 8 485 0 (marked for saving) chromosome contig_5575: 462 1 16167 16460 8 8 462 0 (marked for saving) chromosome contig_6542: 465 1 36784 37155 8 8 465 0 (marked for saving) chromosome contig_6297: 466 1 72742 73122 8 8 466 0 (marked for saving) chromosome contig_5780: 731 1 36116 36448 9 9 731 0 (marked for saving) chromosome contig_2644: 858 1 2418 2693 9 9 858 0 (marked for saving) chromosome contig_5128: 537 1 1110 1406 9 9 537 0 (marked for saving) chromosome contig_3155: 545 1 16432 16752 9 9 545 0 (marked for saving) chromosome contig_689: 644 1 43960 44310 9 9 644 0 (marked for saving) chromosome contig_10998: 649 1 2286 2648 9 9 649 0 (marked for saving) chromosome contig_9904: 608 1 44189 44563 9 9 608 0 (marked for saving) chromosome contig_7538: 535 1 43977 44315 9 9 535 0 (marked for saving) chromosome contig_702: 529 1 61041 61349 9 9 529 0 (marked for saving) chromosome contig_4903: 767 1 10686 10931 9 9 767 0 (marked for saving) chromosome contig_6987: 535 1 5836 6162 9 9 535 0 (marked for saving) chromosome contig_6056: 544 1 115524 115904 9 9 544 0 (marked for saving) chromosome contig_12790: 676 1 2 223 9 9 676 0 (marked for saving) chromosome contig_9873: 826 1 1992 4239 9 10 934 0.1 (marked for saving) chromosome groupXVIII: 336 11654651 12540489 12540770 6 6 336 0 (marked for saving) chromosome contig_9879: 699 1 31347 33206 9 10 822 0.1 (marked for saving) chromosome contig_4019: 413 1 516 21531 7 11 651 1.8 (marked for saving) chromosome contig_4905: 836 1 15859 22506 9 12 1021 0.5 (marked for saving) chromosome contig_9186: 412 1 147076 149640 7 12 690 0.2 (marked for saving) chromosome contig_5064: 463 1 13917 24415 8 13 759 0.8 (marked for saving) chromosome groupI: 535 22378572 23542011 23542337 9 9 535 0 (marked for saving) chromosome contig_3191: 474 1 68411 71288 8 13 751 0.2 (marked for saving) chromosome contig_2646: 1083 1 1107 47554 10 14 1396 3.9 (marked for saving) chromosome groupVIII: 649 17501866 18664103 18664465 9 9 649 0 (marked for saving) chromosome contig_2642: 1143 1 48751 91272 12 15 1337 3.6 (marked for saving) chromosome contig_3830: 523 1 12143 20638 9 15 862 0.7 (marked for saving) chromosome contig_1879: 537 1 44431 49764 9 17 976 0.4 (marked for saving) chromosome contig_5939: 526 1 228807 295839 9 17 967 5.7 (marked for saving) .chromosome contig_5115: 533 1 123126 127738 9 18 1039 0.3 (marked for saving) chromosome groupXXI: 731 7303305 7565348 7565680 9 9 731 0 (marked for saving) 485 7921709 8945403 9086848 8 9 540 12.1 (marked for saving) chromosome contig_9874: 871 1 2484 8404 9 18 1689 0.5 (marked for saving) chromosome contig_9877: 962 1 4239 26330 9 19 1753 1.8 (marked for saving) chromosome groupXIII: 537 10716855 11874506 11879839 9 17 976 0.4 (marked for saving) chromosome groupXVII: 698 437551 612703 614489 9 10 818 0.1 (marked for saving) 544 6639093 7799883 7800263 9 9 544 0 (marked for saving) chromosome contig_2645: 904 1 278 19677 9 20 1650 1.6 (marked for saving) chromosome groupIII: 680 15460101 16526708 16625925 10 10 680 8.5 (marked for saving) 462 3844607 4273447 4273740 8 8 462 0 (marked for saving) chromosome contig_9872: 742 1 61617 89450 9 27 2062 2.3 (marked for saving) chromosome contig_6417: 844 1 33858 46196 9 27 2160 1 (marked for saving) chromosome groupIX: 545 12652966 13815571 13815891 9 9 545 0 (marked for saving) 539 10651904 10902360 11288711 9 21 1219 33.1 (marked for saving) chromosome groupXV: 523 9943718 10926210 10934705 9 15 862 0.7 (marked for saving) 413 2948752 3875845 3896860 7 11 651 1.8 (marked for saving) chromosome contig_2345: 1009 1 69 24078 9 31 2726 2 (marked for saving) chromosome groupVII: 644 22200550 22290234 22854404 9 18 1173 48.3 (marked for saving) 412 3636762 4449795 4452359 7 12 690 0.2 (marked for saving) chromosome groupV: 1097 3447895 4547908 4610678 11 32 2565 5.3 (marked for saving) 466 1020951 1107043 1107423 8 8 466 0 (marked for saving) chromosome contig_1095: 1023 1 26357 49732 9 48 4164 2 (marked for saving) chromosome groupXX: 1126 8987290 9710597 9849786 11 52 4363 11.9 (marked for saving) chromosome contig_2643: 1442 1 4976 46955 9 58 5807 3.5 (marked for saving) chromosome contig_5303: 1459 1 239842 370364 11 64 5841 11.1 (marked for saving) chromosome contig_2344: 1044 1 19832 66195 9 64 5536 3.9 (marked for saving) chromosome groupIV: 700 595069 955528 1374545 9 11 970 35.9 (marked for saving) 546 2508621 3153854 3242863 9 20 1199 7.6 (marked for saving) 526 13762407 13906042 13973074 9 17 967 5.7 (marked for saving) 433 21509959 22675345 22675785 7 7 433 0 (marked for saving) 360 9544425 9572268 9572486 6 6 360 0 (marked for saving) chromosome groupXVI: 1459 9544425 9699116 9829638 11 64 5841 11.1 (marked for saving) 535 274199 387991 388329 9 9 535 0 (marked for saving) chromosome groupVI: 933 15016717 16155941 16182581 9 22 1853 2.2 (marked for saving) 601 7426683 7640753 8022117 10 11 665 32.6 (marked for saving) 533 8354289 8821164 8825776 9 18 1039 0.3 (marked for saving) 485 11218783 11731513 11852484 8 20 1190 10.3 (marked for saving) 479 3844607 3920034 3950449 8 15 875 2.6 (marked for saving) chromosome groupXI: 1361 1058349 1524174 1924958 11 88 7626 34.3 (marked for saving) chromosome groupX: 1553 8814042 9794354 9976077 12 99 8634 15.5 (marked for saving) chromosome groupXII: 2615 10554036 11539588 11716245 13 116 11048 15.1 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange groupXII 2615 10554036 11539588 11716245 13 116 11048 15.1 (saved) groupX 1553 8814042 9794354 9976077 12 99 8634 15.5 (saved) contig_5303 1459 1 239842 370364 11 64 5841 11.1 (saved) groupXVI 1459 9544425 9699116 9829638 11 64 5841 11.1 (saved) contig_2643 1442 1 4976 46955 9 58 5807 3.5 (saved) groupXI 1361 1058349 1524174 1924958 11 88 7626 34.3 (saved) contig_2642 1143 1 48751 91272 12 15 1337 3.6 (saved) groupXX 1126 8987290 9710597 9849786 11 52 4363 11.9 (saved) groupV 1097 3447895 4547908 4610678 11 32 2565 5.3 (saved) contig_2646 1083 1 1107 47554 10 14 1396 3.9 (saved) contig_2344 1044 1 19832 66195 9 64 5536 3.9 (saved) contig_1095 1023 1 26357 49732 9 48 4164 2 (saved) contig_2345 1009 1 69 24078 9 31 2726 2 (saved) contig_9877 962 1 4239 26330 9 19 1753 1.8 (saved) groupVI 933 15016717 16155941 16182581 9 22 1853 2.2 (saved) contig_2645 904 1 278 19677 9 20 1650 1.6 (saved) contig_9874 871 1 2484 8404 9 18 1689 0.5 (saved) contig_2644 858 1 2418 2693 9 9 858 0 (saved) contig_6417 844 1 33858 46196 9 27 2160 1 (saved) contig_4905 836 1 15859 22506 9 12 1021 0.5 (saved) contig_9873 826 1 1992 4239 9 10 934 0.1 contig_4903 767 1 10686 10931 9 9 767 0 contig_9872 742 1 61617 89450 9 27 2062 2.3 contig_5780 731 1 36116 36448 9 9 731 0 groupXXI 731 7303305 7565348 7565680 9 9 731 0 groupIV 700 595069 955528 1374545 9 11 970 35.9 contig_9879 699 1 31347 33206 9 10 822 0.1 groupXVII 698 437551 612703 614489 9 10 818 0.1 groupIII 680 15460101 16526708 16625925 10 10 680 8.5 contig_12790 676 1 2 223 9 9 676 0 contig_10998 649 1 2286 2648 9 9 649 0 groupVIII 649 17501866 18664103 18664465 9 9 649 0 contig_689 644 1 43960 44310 9 9 644 0 groupVII 644 22200550 22290234 22854404 9 18 1173 48.3 contig_9904 608 1 44189 44563 9 9 608 0 groupVI 601 7426683 7640753 8022117 10 11 665 32.6 groupIV 546 2508621 3153854 3242863 9 20 1199 7.6 contig_3155 545 1 16432 16752 9 9 545 0 groupIX 545 12652966 13815571 13815891 9 9 545 0 contig_6056 544 1 115524 115904 9 9 544 0 groupXVII 544 6639093 7799883 7800263 9 9 544 0 groupIX 539 10651904 10902360 11288711 9 21 1219 33.1 contig_5128 537 1 1110 1406 9 9 537 0 contig_1879 537 1 44431 49764 9 17 976 0.4 groupXIII 537 10716855 11874506 11879839 9 17 976 0.4 contig_7538 535 1 43977 44315 9 9 535 0 contig_6987 535 1 5836 6162 9 9 535 0 groupI 535 22378572 23542011 23542337 9 9 535 0 groupXVI 535 274199 387991 388329 9 9 535 0 contig_5115 533 1 123126 127738 9 18 1039 0.3 groupVI 533 8354289 8821164 8825776 9 18 1039 0.3 contig_702 529 1 61041 61349 9 9 529 0 contig_5939 526 1 228807 295839 9 17 967 5.7 groupIV 526 13762407 13906042 13973074 9 17 967 5.7 contig_3830 523 1 12143 20638 9 15 862 0.7 groupXV 523 9943718 10926210 10934705 9 15 862 0.7 contig_5828 485 1 33515 33892 8 8 485 0 groupXXI 485 7921709 8945403 9086848 8 9 540 12.1 groupVI 485 11218783 11731513 11852484 8 20 1190 10.3 groupVI 479 3844607 3920034 3950449 8 15 875 2.6 contig_3191 474 1 68411 71288 8 13 751 0.2 contig_8795 468 1 44893 45210 8 8 468 0 contig_3195 468 1 62247 62519 8 8 468 0 contig_6297 466 1 72742 73122 8 8 466 0 groupV 466 1020951 1107043 1107423 8 8 466 0 contig_6542 465 1 36784 37155 8 8 465 0 contig_5064 463 1 13917 24415 8 13 759 0.8 contig_10719 462 1 4189 4413 8 8 462 0 contig_5575 462 1 16167 16460 8 8 462 0 groupIII 462 3844607 4273447 4273740 8 8 462 0 contig_7821 433 1 128221 128661 7 7 433 0 groupIV 433 21509959 22675345 22675785 7 7 433 0 contig_5065 431 1 44499 44834 7 7 431 0 contig_4019 413 1 516 21531 7 11 651 1.8 groupXV 413 2948752 3875845 3896860 7 11 651 1.8 contig_9186 412 1 147076 149640 7 12 690 0.2 groupVII 412 3636762 4449795 4452359 7 12 690 0.2 contig_8797 407 1 10564 10767 7 7 407 0 contig_6545 369 1 64 414 6 6 369 0 contig_6543 365 1 29506 29790 6 6 365 0 contig_5857 360 1 10727 10945 6 6 360 0 groupIV 360 9544425 9572268 9572486 6 6 360 0 contig_8517 336 1 95 376 6 6 336 0 groupXVIII 336 11654651 12540489 12540770 6 6 336 0 contig_4561 223 1 99866 100111 4 4 223 0 groupXIV 223 10308679 11473049 11473294 4 4 223 0 global files summary: Gasterosteus_aculeatus.glob01.groupXII.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob02.groupX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob03.contig_5303.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob04.groupXVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob05.contig_2643.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob06.groupXI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob07.contig_2642.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob08.groupXX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob09.groupV.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob10.contig_2646.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob11.contig_2344.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob12.contig_1095.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob13.contig_2345.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob14.contig_9877.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob15.groupVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob16.contig_2645.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob17.contig_9874.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob18.contig_2644.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob19.contig_6417.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob20.contig_4905.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...............chromosome scaffold_1455: 231 1 1186 1446 4 4 231 0 (marked for saving) chromosome contig_16309: 231 1 1186 1446 4 4 231 0 (marked for saving) .chromosome scaffold_197: 273 4078 58501 58962 5 5 273 0 (marked for saving) chromosome contig_13639: 273 4078 10607 11068 5 5 273 0 (marked for saving) chromosome contig_6543: 364 4078 29425 29757 6 6 364 0 (marked for saving) chromosome contig_6545: 370 1 10 381 6 6 370 0 (marked for saving) chromosome contig_8830: 340 4078 12567 12809 6 6 340 0 (marked for saving) chromosome contig_5857: 411 4078 10736 10981 7 7 411 0 (marked for saving) chromosome contig_8797: 418 4078 10483 10767 7 7 418 0 (marked for saving) chromosome contig_5065: 493 4078 44295 44888 8 8 493 0 (marked for saving) chromosome contig_8795: 464 4078 44860 45201 8 8 464 0 (marked for saving) chromosome contig_7821: 527 4078 127984 128652 8 8 527 0 (marked for saving) chromosome contig_6542: 466 4078 36778 37089 8 8 466 0 (marked for saving) chromosome groupXVIII: 450 11729407 12540486 12540758 8 8 450 0 (marked for saving) chromosome groupXIV: 462 10661877 11473049 11473285 8 8 462 0 (marked for saving) chromosome contig_8517: 450 1 107 379 8 8 450 0 (marked for saving) chromosome contig_4561: 462 4078 99875 100111 8 8 462 0 (marked for saving) chromosome contig_6297: 481 4078 72718 73290 8 8 481 0 (marked for saving) chromosome contig_3195: 515 4078 62277 62525 9 9 515 0 (marked for saving) chromosome contig_5575: 530 4078 16110 16457 9 9 530 0 (marked for saving) chromosome contig_5828: 550 4078 33515 33784 9 9 550 0 (marked for saving) chromosome contig_10719: 554 1 3898 4680 9 9 554 0 (marked for saving) chromosome groupI: 551 22730953 23542080 23542343 9 9 551 0 (marked for saving) chromosome contig_6987: 551 4078 5830 6093 9 9 551 0 (marked for saving) chromosome contig_10998: 714 1 2304 2606 10 10 714 0 (marked for saving) chromosome contig_2642: 747 4078 90958 91350 10 10 747 0 (marked for saving) chromosome contig_5780: 792 4078 36152 36448 10 10 792 0 (marked for saving) chromosome contig_9904: 677 4078 44222 44578 10 10 677 0 (marked for saving) chromosome contig_2644: 900 1 2418 2705 10 10 900 0 (marked for saving) chromosome contig_3155: 627 4078 16363 16782 10 10 627 0 (marked for saving) chromosome contig_5128: 610 1 1110 1475 10 10 610 0 (marked for saving) chromosome contig_7538: 602 4078 43986 44306 10 10 602 0 (marked for saving) chromosome contig_689: 726 4078 43939 44298 10 10 726 0 (marked for saving) chromosome contig_702: 600 4078 61017 61499 10 10 600 0 (marked for saving) chromosome contig_6056: 623 4078 115521 115868 10 10 623 0 (marked for saving) chromosome contig_12790: 723 1 2 220 10 10 723 0 (marked for saving) chromosome contig_9873: 849 1 1935 4245 10 11 940 0.2 (marked for saving) chromosome contig_2646: 739 1 1197 11563 10 12 941 1.2 (marked for saving) chromosome contig_9186: 411 4078 147076 149688 7 13 754 0.3 (marked for saving) chromosome contig_5064: 525 4078 14031 24325 9 14 821 1.2 (marked for saving) chromosome contig_9879: 780 4078 31359 75906 10 14 1088 5.4 (marked for saving) chromosome contig_3191: 525 4078 68354 71372 9 15 867 0.3 (marked for saving) chromosome groupVIII: 714 17849624 18664121 18664423 10 10 714 0 (marked for saving) 340 2047172 2601397 2601639 6 6 340 0 (marked for saving) chromosome contig_4019: 531 1 225 21492 9 16 935 2.6 (marked for saving) chromosome contig_4903: 900 4078 5131 10922 11 16 1191 0.7 (marked for saving) chromosome contig_3830: 542 4078 12083 20626 9 17 996 1 (marked for saving) chromosome contig_4905: 990 4078 15850 35383 11 17 1355 2.3 (marked for saving) chromosome contig_1879: 571 4078 44458 49743 9 18 1084 0.6 (marked for saving) chromosome groupXIII: 571 11067471 11874527 11879812 9 18 1084 0.6 (marked for saving) chromosome groupIII: 677 15811634 16625536 16625892 10 10 677 0 (marked for saving) 530 3519479 4273450 4273797 9 9 530 0 (marked for saving) chromosome contig_5115: 622 4078 123147 127744 10 19 1150 0.5 (marked for saving) chromosome contig_5939: 598 4078 228774 295845 10 20 1149 8.2 (marked for saving) chromosome contig_9874: 860 1 2487 8413 10 20 1692 0.7 (marked for saving) chromosome contig_9877: 947 4078 4242 26330 10 21 1766 2.7 (marked for saving) chromosome contig_2645: 854 1 14 19677 10 21 1522 2.4 (marked for saving) chromosome groupXXI: 792 6823626 7565384 7565680 10 10 792 0 (marked for saving) 550 8275038 8945403 9086848 9 11 658 17.3 (marked for saving) chromosome groupXVII: 749 521857 612823 614486 10 11 867 0.2 (marked for saving) 672 7130674 7799880 7942729 11 11 672 17.5 (marked for saving) chromosome contig_6417: 908 4078 33855 46196 10 30 2388 1.5 (marked for saving) chromosome contig_9872: 1018 4078 61563 92385 10 31 2579 3.7 (marked for saving) chromosome groupVII: 726 22042240 22290213 22854554 10 20 1326 69.2 (marked for saving) 411 4074901 4449795 4452407 7 13 754 0.3 (marked for saving) chromosome groupIX: 627 13002235 13815541 13815960 10 10 627 0 (marked for saving) 548 10768039 10902354 11288768 9 24 1382 47.3 (marked for saving) chromosome contig_2345: 1008 1 57 23907 10 34 2861 2.9 (marked for saving) chromosome groupXV: 542 10120921 10926222 10934765 9 17 996 1 (marked for saving) 531 3548797 3875884 3897151 9 16 935 2.6 (marked for saving) chromosome groupV: 908 3798233 4598337 4610678 10 30 2388 1.5 (marked for saving) 481 1058489 1107019 1107591 8 8 481 0 (marked for saving) chromosome contig_1095: 1079 4078 26570 49693 10 53 4446 2.8 (marked for saving) chromosome groupXX: 1079 9495156 9710810 9733933 10 53 4446 2.8 (marked for saving) chromosome contig_2643: 1081 4078 4952 46955 10 63 5309 5.1 (marked for saving) chromosome groupIV: 598 13741166 13906009 13973080 10 20 1149 8.2 (marked for saving) 554 335990 955261 956043 9 9 554 0 (marked for saving) 551 2651726 3153848 3242830 9 20 1200 10.9 (marked for saving) 527 21862550 22675108 22675776 8 8 527 0 (marked for saving) 411 9183080 9572277 9572522 7 7 411 0 (marked for saving) chromosome contig_2344: 1291 4078 19871 66165 10 72 6176 5.6 (marked for saving) chromosome contig_5303: 1920 4078 214375 277218 11 73 7037 7.7 (marked for saving) chromosome groupXVI: 1920 9699184 9792262 9855105 11 72 7002 7.7 (marked for saving) 602 16309 388000 388320 10 10 602 0 (marked for saving) chromosome groupXI: 1327 927285 1481474 1740599 10 97 8065 31.7 (marked for saving) chromosome groupVI: 1177 15375753 16143064 16188136 12 34 2609 5.5 (marked for saving) 639 8016768 8021752 8825755 10 29 1760 98.6 (marked for saving) 548 11665683 11731459 11852370 9 22 1314 14.8 (marked for saving) 545 3527991 3920001 3950449 9 15 882 3.7 (marked for saving) chromosome groupX: 1550 9122334 9855319 9936730 10 108 9336 9.9 (marked for saving) chromosome groupXII: 1257 10862624 11575579 11674038 10 116 9419 12 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange contig_5303 1920 4078 214375 277218 11 73 7037 7.7 (saved) groupXVI 1920 9699184 9792262 9855105 11 72 7002 7.7 (saved) groupX 1550 9122334 9855319 9936730 10 108 9336 9.9 (saved) groupXI 1327 927285 1481474 1740599 10 97 8065 31.7 (saved) contig_2344 1291 4078 19871 66165 10 72 6176 5.6 (saved) groupXII 1257 10862624 11575579 11674038 10 116 9419 12 (saved) groupVI 1177 15375753 16143064 16188136 12 34 2609 5.5 (saved) contig_2643 1081 4078 4952 46955 10 63 5309 5.1 (saved) contig_1095 1079 4078 26570 49693 10 53 4446 2.8 (saved) groupXX 1079 9495156 9710810 9733933 10 53 4446 2.8 (saved) contig_9872 1018 4078 61563 92385 10 31 2579 3.7 (saved) contig_2345 1008 1 57 23907 10 34 2861 2.9 (saved) contig_4905 990 4078 15850 35383 11 17 1355 2.3 (saved) contig_9877 947 4078 4242 26330 10 21 1766 2.7 (saved) contig_6417 908 4078 33855 46196 10 30 2388 1.5 (saved) groupV 908 3798233 4598337 4610678 10 30 2388 1.5 (saved) contig_2644 900 1 2418 2705 10 10 900 0 (saved) contig_4903 900 4078 5131 10922 11 16 1191 0.7 (saved) contig_9874 860 1 2487 8413 10 20 1692 0.7 (saved) contig_2645 854 1 14 19677 10 21 1522 2.4 (saved) contig_9873 849 1 1935 4245 10 11 940 0.2 contig_5780 792 4078 36152 36448 10 10 792 0 groupXXI 792 6823626 7565384 7565680 10 10 792 0 contig_9879 780 4078 31359 75906 10 14 1088 5.4 groupXVII 749 521857 612823 614486 10 11 867 0.2 contig_2642 747 4078 90958 91350 10 10 747 0 contig_2646 739 1 1197 11563 10 12 941 1.2 contig_689 726 4078 43939 44298 10 10 726 0 groupVII 726 22042240 22290213 22854554 10 20 1326 69.2 contig_12790 723 1 2 220 10 10 723 0 contig_10998 714 1 2304 2606 10 10 714 0 groupVIII 714 17849624 18664121 18664423 10 10 714 0 contig_9904 677 4078 44222 44578 10 10 677 0 groupIII 677 15811634 16625536 16625892 10 10 677 0 groupXVII 672 7130674 7799880 7942729 11 11 672 17.5 groupVI 639 8016768 8021752 8825755 10 29 1760 98.6 contig_3155 627 4078 16363 16782 10 10 627 0 groupIX 627 13002235 13815541 13815960 10 10 627 0 contig_6056 623 4078 115521 115868 10 10 623 0 contig_5115 622 4078 123147 127744 10 19 1150 0.5 contig_5128 610 1 1110 1475 10 10 610 0 contig_7538 602 4078 43986 44306 10 10 602 0 groupXVI 602 16309 388000 388320 10 10 602 0 contig_702 600 4078 61017 61499 10 10 600 0 contig_5939 598 4078 228774 295845 10 20 1149 8.2 groupIV 598 13741166 13906009 13973080 10 20 1149 8.2 contig_1879 571 4078 44458 49743 9 18 1084 0.6 groupXIII 571 11067471 11874527 11879812 9 18 1084 0.6 contig_10719 554 1 3898 4680 9 9 554 0 groupIV 554 335990 955261 956043 9 9 554 0 groupI 551 22730953 23542080 23542343 9 9 551 0 contig_6987 551 4078 5830 6093 9 9 551 0 groupIV 551 2651726 3153848 3242830 9 20 1200 10.9 contig_5828 550 4078 33515 33784 9 9 550 0 groupXXI 550 8275038 8945403 9086848 9 11 658 17.3 groupIX 548 10768039 10902354 11288768 9 24 1382 47.3 groupVI 548 11665683 11731459 11852370 9 22 1314 14.8 groupVI 545 3527991 3920001 3950449 9 15 882 3.7 contig_3830 542 4078 12083 20626 9 17 996 1 groupXV 542 10120921 10926222 10934765 9 17 996 1 contig_4019 531 1 225 21492 9 16 935 2.6 groupXV 531 3548797 3875884 3897151 9 16 935 2.6 contig_5575 530 4078 16110 16457 9 9 530 0 groupIII 530 3519479 4273450 4273797 9 9 530 0 contig_7821 527 4078 127984 128652 8 8 527 0 groupIV 527 21862550 22675108 22675776 8 8 527 0 contig_5064 525 4078 14031 24325 9 14 821 1.2 contig_3191 525 4078 68354 71372 9 15 867 0.3 contig_3195 515 4078 62277 62525 9 9 515 0 contig_5065 493 4078 44295 44888 8 8 493 0 contig_6297 481 4078 72718 73290 8 8 481 0 groupV 481 1058489 1107019 1107591 8 8 481 0 contig_6542 466 4078 36778 37089 8 8 466 0 contig_8795 464 4078 44860 45201 8 8 464 0 groupXIV 462 10661877 11473049 11473285 8 8 462 0 contig_4561 462 4078 99875 100111 8 8 462 0 groupXVIII 450 11729407 12540486 12540758 8 8 450 0 contig_8517 450 1 107 379 8 8 450 0 contig_8797 418 4078 10483 10767 7 7 418 0 contig_5857 411 4078 10736 10981 7 7 411 0 contig_9186 411 4078 147076 149688 7 13 754 0.3 groupVII 411 4074901 4449795 4452407 7 13 754 0.3 groupIV 411 9183080 9572277 9572522 7 7 411 0 contig_6545 370 1 10 381 6 6 370 0 contig_6543 364 4078 29425 29757 6 6 364 0 contig_8830 340 4078 12567 12809 6 6 340 0 groupVIII 340 2047172 2601397 2601639 6 6 340 0 scaffold_197 273 4078 58501 58962 5 5 273 0 contig_13639 273 4078 10607 11068 5 5 273 0 scaffold_1455 231 1 1186 1446 4 4 231 0 contig_16309 231 1 1186 1446 4 4 231 0 global files summary: Gasterosteus_aculeatus.glob01.contig_5303.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob02.groupXVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob03.groupX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob04.groupXI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob05.contig_2344.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob06.groupXII.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob07.groupVI.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob08.contig_2643.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob09.contig_1095.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob10.groupXX.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob11.contig_9872.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob12.contig_2345.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob13.contig_4905.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob14.contig_9877.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob15.contig_6417.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob16.groupV.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob17.contig_2644.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob18.contig_4903.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob19.contig_9874.minQN4.fac2.01.blastresult Gasterosteus_aculeatus.glob20.contig_2645.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ....chromosome Un: 1107 104328214 106218114 106219621 12 13 1192 0 (marked for saving) chromosome 5: 925 170703988 171708852 171709328 12 12 925 0 (marked for saving) 776 233154745 235125474 235126172 11 11 776 0 (marked for saving) 726 220338988 221750827 221751207 12 12 726 0 (marked for saving) 716 236519998 237689910 237717180 12 18 1058 1.3 (marked for saving) 705 215941327 216233372 216233755 11 11 705 0 (marked for saving) 697 227158837 228311953 228328298 11 20 1237 0.8 (marked for saving) chromosome 2: 1856 201082211 201105043 201365745 12 127 11615 13.1 (marked for saving) 850 534202550 536178321 536178944 12 12 850 0 (marked for saving) 397 12975488 13719763 13719990 7 7 397 0 (marked for saving) chromosome 4: 1843 186235217 187418008 187538614 12 116 10150 6 (marked for saving) 1022 287192807 288288780 288480763 12 27 2097 9.6 (marked for saving) 622 120657455 122523495 122523806 10 10 622 0 (marked for saving) chromosome 1: 739 374206637 375721124 375721483 12 12 739 0 (marked for saving) 733 24815945 26416447 26416797 12 12 733 0 (marked for saving) 712 737326370 739265206 739307084 11 22 1375 2.1 (marked for saving) 696 111061721 111097761 111211667 11 19 1159 5.7 (marked for saving) 670 70559561 71401447 71401983 11 11 670 0 (marked for saving) 667 286501592 287967810 288163332 11 18 1074 9.8 (marked for saving) 644 83037800 84486370 84506475 10 18 1144 1 (marked for saving) 581 14074931 15474442 15474789 9 9 581 0 (marked for saving) 566 600065741 600246300 600369409 9 17 1048 6.2 (marked for saving) 530 459201611 459641440 459641709 9 9 530 0 (marked for saving) 500 368796422 370592798 370593142 8 8 500 0 (marked for saving) 476 372260945 373070691 373071089 8 8 476 0 (marked for saving) 231 342281405 343085743 343085946 4 4 231 0 (marked for saving) chromosome 8: 4156 291801671 292554153 293690078 15 141 15440 57.2 (marked for saving) 868 209933702 211679527 211680048 12 12 868 0 (marked for saving) 815 215602019 216826188 217471292 12 12 815 32.4 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 8 4156 291801671 292554153 293690078 15 141 15440 57.2 (saved) 2 1856 201082211 201105043 201365745 12 127 11615 13.1 (saved) 4 1843 186235217 187418008 187538614 12 116 10150 6 (saved) Un 1107 104328214 106218114 106219621 12 13 1192 0 (saved) 4 1022 287192807 288288780 288480763 12 27 2097 9.6 (saved) 5 925 170703988 171708852 171709328 12 12 925 0 (saved) 8 868 209933702 211679527 211680048 12 12 868 0 (saved) 2 850 534202550 536178321 536178944 12 12 850 0 (saved) 8 815 215602019 216826188 217471292 12 12 815 32.4 (saved) 5 776 233154745 235125474 235126172 11 11 776 0 (saved) 1 739 374206637 375721124 375721483 12 12 739 0 (saved) 1 733 24815945 26416447 26416797 12 12 733 0 (saved) 5 726 220338988 221750827 221751207 12 12 726 0 (saved) 5 716 236519998 237689910 237717180 12 18 1058 1.3 (saved) 1 712 737326370 739265206 739307084 11 22 1375 2.1 (saved) 5 705 215941327 216233372 216233755 11 11 705 0 (saved) 5 697 227158837 228311953 228328298 11 20 1237 0.8 (saved) 1 696 111061721 111097761 111211667 11 19 1159 5.7 (saved) 1 670 70559561 71401447 71401983 11 11 670 0 (saved) 1 667 286501592 287967810 288163332 11 18 1074 9.8 (saved) 1 644 83037800 84486370 84506475 10 18 1144 1 4 622 120657455 122523495 122523806 10 10 622 0 1 581 14074931 15474442 15474789 9 9 581 0 1 566 600065741 600246300 600369409 9 17 1048 6.2 1 530 459201611 459641440 459641709 9 9 530 0 1 500 368796422 370592798 370593142 8 8 500 0 1 476 372260945 373070691 373071089 8 8 476 0 2 397 12975488 13719763 13719990 7 7 397 0 1 231 342281405 343085743 343085946 4 4 231 0 global files summary: Monodelphis_domestica.glob01.8.minQN4.fac2.01.blastresult Monodelphis_domestica.glob02.2.minQN4.fac2.01.blastresult Monodelphis_domestica.glob03.4.minQN4.fac2.01.blastresult Monodelphis_domestica.glob04.Un.minQN4.fac2.01.blastresult Monodelphis_domestica.glob05.4.minQN4.fac2.02.blastresult Monodelphis_domestica.glob06.5.minQN4.fac2.01.blastresult Monodelphis_domestica.glob07.8.minQN4.fac2.02.blastresult Monodelphis_domestica.glob08.2.minQN4.fac2.02.blastresult Monodelphis_domestica.glob09.8.minQN4.fac2.03.blastresult Monodelphis_domestica.glob10.5.minQN4.fac2.02.blastresult Monodelphis_domestica.glob11.1.minQN4.fac2.01.blastresult Monodelphis_domestica.glob12.1.minQN4.fac2.02.blastresult Monodelphis_domestica.glob13.5.minQN4.fac2.03.blastresult Monodelphis_domestica.glob14.5.minQN4.fac2.04.blastresult Monodelphis_domestica.glob15.1.minQN4.fac2.03.blastresult Monodelphis_domestica.glob16.5.minQN4.fac2.05.blastresult Monodelphis_domestica.glob17.5.minQN4.fac2.06.blastresult Monodelphis_domestica.glob18.1.minQN4.fac2.04.blastresult Monodelphis_domestica.glob19.1.minQN4.fac2.05.blastresult Monodelphis_domestica.glob20.1.minQN4.fac2.06.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange chromosome Un: 986 105646319 106218114 106219642 10 11 1048 0.2 (marked for saving) chromosome 5: 778 171571348 171708981 171709376 10 10 778 0 (marked for saving) 610 221472824 221750827 221751162 10 10 610 0 (marked for saving) 583 234895116 235125474 235126154 8 8 583 0.1 (marked for saving) 578 215832988 216233417 216233722 9 9 578 0 (marked for saving) 573 228240052 228311953 228328307 9 18 1094 2.8 (marked for saving) 547 237144148 237689997 237717150 9 15 890 4.7 (marked for saving) chromosome 8: 1587 292947020 293235105 293354412 10 104 9618 20.7 (marked for saving) 739 211153580 211679263 211679946 10 10 739 0.1 (marked for saving) 513 217443392 217470936 217471217 8 8 513 0 (marked for saving) chromosome 4: 1438 187084295 187420006 187538599 10 96 8240 20.6 (marked for saving) 873 287908227 288288777 288480685 10 24 1866 33.3 (marked for saving) 553 122046431 122523513 122523737 9 9 553 0 (marked for saving) chromosome 2: 3072 200870075 201105049 201431522 11 114 12696 56.7 (marked for saving) 730 535604839 536178540 536178785 10 10 730 0 (marked for saving) 230 13326115 13719784 13720149 4 4 230 0 (marked for saving) chromosome 1: 628 738734108 739265248 739307030 10 19 1164 7.2 (marked for saving) 601 26090068 26416525 26416794 10 10 601 0 (marked for saving) 599 375567208 375721088 375721492 10 10 599 0 (marked for saving) 578 111009720 111097587 111211715 9 17 1054 19.8 (marked for saving) 573 84104740 84486370 84506502 9 17 1062 3.5 (marked for saving) 542 70967172 71401396 71402025 9 9 542 0.1 (marked for saving) 539 287941240 287968086 288163326 9 16 939 33.9 (marked for saving) 535 599958480 600246309 600369064 9 14 827 21.3 (marked for saving) 523 15034724 15474442 15474780 8 8 523 0 (marked for saving) 494 370376028 370592840 370593076 8 8 494 0 (marked for saving) 467 372768860 373070646 373071092 8 8 467 0 (marked for saving) 289 459126512 459641488 459641694 5 5 289 0 (marked for saving) 231 342775056 343085683 343085946 4 4 231 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 2 3072 200870075 201105049 201431522 11 114 12696 56.7 (saved) 8 1587 292947020 293235105 293354412 10 104 9618 20.7 (saved) 4 1438 187084295 187420006 187538599 10 96 8240 20.6 (saved) Un 986 105646319 106218114 106219642 10 11 1048 0.2 (saved) 4 873 287908227 288288777 288480685 10 24 1866 33.3 (saved) 5 778 171571348 171708981 171709376 10 10 778 0 (saved) 8 739 211153580 211679263 211679946 10 10 739 0.1 (saved) 2 730 535604839 536178540 536178785 10 10 730 0 (saved) 1 628 738734108 739265248 739307030 10 19 1164 7.2 (saved) 5 610 221472824 221750827 221751162 10 10 610 0 (saved) 1 601 26090068 26416525 26416794 10 10 601 0 (saved) 1 599 375567208 375721088 375721492 10 10 599 0 (saved) 5 583 234895116 235125474 235126154 8 8 583 0.1 (saved) 5 578 215832988 216233417 216233722 9 9 578 0 (saved) 1 578 111009720 111097587 111211715 9 17 1054 19.8 (saved) 5 573 228240052 228311953 228328307 9 18 1094 2.8 (saved) 1 573 84104740 84486370 84506502 9 17 1062 3.5 (saved) 4 553 122046431 122523513 122523737 9 9 553 0 (saved) 5 547 237144148 237689997 237717150 9 15 890 4.7 (saved) 1 542 70967172 71401396 71402025 9 9 542 0.1 (saved) 1 539 287941240 287968086 288163326 9 16 939 33.9 1 535 599958480 600246309 600369064 9 14 827 21.3 1 523 15034724 15474442 15474780 8 8 523 0 8 513 217443392 217470936 217471217 8 8 513 0 1 494 370376028 370592840 370593076 8 8 494 0 1 467 372768860 373070646 373071092 8 8 467 0 1 289 459126512 459641488 459641694 5 5 289 0 1 231 342775056 343085683 343085946 4 4 231 0 2 230 13326115 13719784 13720149 4 4 230 0 global files summary: Monodelphis_domestica.glob01.2.minQN4.fac2.01.blastresult Monodelphis_domestica.glob02.8.minQN4.fac2.01.blastresult Monodelphis_domestica.glob03.4.minQN4.fac2.01.blastresult Monodelphis_domestica.glob04.Un.minQN4.fac2.01.blastresult Monodelphis_domestica.glob05.4.minQN4.fac2.02.blastresult Monodelphis_domestica.glob06.5.minQN4.fac2.01.blastresult Monodelphis_domestica.glob07.8.minQN4.fac2.02.blastresult Monodelphis_domestica.glob08.2.minQN4.fac2.02.blastresult Monodelphis_domestica.glob09.1.minQN4.fac2.01.blastresult Monodelphis_domestica.glob10.5.minQN4.fac2.02.blastresult Monodelphis_domestica.glob11.1.minQN4.fac2.02.blastresult Monodelphis_domestica.glob12.1.minQN4.fac2.03.blastresult Monodelphis_domestica.glob13.5.minQN4.fac2.03.blastresult Monodelphis_domestica.glob14.5.minQN4.fac2.04.blastresult Monodelphis_domestica.glob15.1.minQN4.fac2.04.blastresult Monodelphis_domestica.glob16.5.minQN4.fac2.05.blastresult Monodelphis_domestica.glob17.1.minQN4.fac2.05.blastresult Monodelphis_domestica.glob18.4.minQN4.fac2.03.blastresult Monodelphis_domestica.glob19.5.minQN4.fac2.06.blastresult Monodelphis_domestica.glob20.1.minQN4.fac2.06.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ....chromosome Un: 976 105885553 106218114 106223253 9 11 1263 0.4 (marked for saving) chromosome 5: 643 171520020 171708972 171709334 9 9 643 0 (marked for saving) 531 236551618 237689976 237717174 9 14 811 2.3 (marked for saving) 525 221371550 221750836 221751126 9 9 525 0 (marked for saving) 479 227928966 228311992 228328448 8 11 651 1.4 (marked for saving) 474 234136342 235125489 235125902 7 7 474 0 (marked for saving) 357 215455874 216233489 216233800 6 6 357 0 (marked for saving) chromosome 8: 1452 293188101 293235090 294158686 12 101 8541 79.1 (marked for saving) 597 211010377 211679536 211679997 9 9 597 0 (marked for saving) 376 216873547 217470927 217471226 6 6 376 0 (marked for saving) chromosome 2: 1389 200384845 200454569 201365664 11 100 8459 78 (marked for saving) 588 535017251 536178345 536178773 9 9 588 0 (marked for saving) chromosome 1: 538 25835990 26416438 26416800 9 9 538 0 (marked for saving) 496 738144054 739265236 739307003 8 15 896 3.5 (marked for saving) 483 83697602 84486313 84506469 8 13 784 1.7 (marked for saving) 479 375660132 375721100 375721366 8 8 479 0 (marked for saving) 464 287560898 287968080 288163317 8 12 694 16.7 (marked for saving) 434 110557338 111097776 111211715 7 11 669 9.7 (marked for saving) 414 600082444 600246321 600369034 7 11 651 10.5 (marked for saving) 402 71265348 71401723 71402184 7 7 402 0 (marked for saving) 350 372194736 373070847 373071143 6 6 350 0 (marked for saving) 316 15048924 15474442 15474780 5 5 316 0 (marked for saving) 309 370467872 370592837 370593067 5 5 309 0 (marked for saving) chromosome 4: 1277 186859330 187431208 187538599 9 88 7747 9.2 (marked for saving) 730 287408320 288288762 288480742 9 20 1483 16.4 (marked for saving) 425 122288618 122523525 122523743 7 7 425 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 8 1452 293188101 293235090 294158686 12 101 8541 79.1 (saved) 2 1389 200384845 200454569 201365664 11 100 8459 78 (saved) 4 1277 186859330 187431208 187538599 9 88 7747 9.2 (saved) Un 976 105885553 106218114 106223253 9 11 1263 0.4 (saved) 4 730 287408320 288288762 288480742 9 20 1483 16.4 (saved) 5 643 171520020 171708972 171709334 9 9 643 0 (saved) 8 597 211010377 211679536 211679997 9 9 597 0 (saved) 2 588 535017251 536178345 536178773 9 9 588 0 (saved) 1 538 25835990 26416438 26416800 9 9 538 0 (saved) 5 531 236551618 237689976 237717174 9 14 811 2.3 (saved) 5 525 221371550 221750836 221751126 9 9 525 0 (saved) 1 496 738144054 739265236 739307003 8 15 896 3.5 (saved) 1 483 83697602 84486313 84506469 8 13 784 1.7 (saved) 5 479 227928966 228311992 228328448 8 11 651 1.4 (saved) 1 479 375660132 375721100 375721366 8 8 479 0 (saved) 5 474 234136342 235125489 235125902 7 7 474 0 (saved) 1 464 287560898 287968080 288163317 8 12 694 16.7 (saved) 1 434 110557338 111097776 111211715 7 11 669 9.7 (saved) 4 425 122288618 122523525 122523743 7 7 425 0 (saved) 1 414 600082444 600246321 600369034 7 11 651 10.5 (saved) 1 402 71265348 71401723 71402184 7 7 402 0 8 376 216873547 217470927 217471226 6 6 376 0 5 357 215455874 216233489 216233800 6 6 357 0 1 350 372194736 373070847 373071143 6 6 350 0 1 316 15048924 15474442 15474780 5 5 316 0 1 309 370467872 370592837 370593067 5 5 309 0 global files summary: Monodelphis_domestica.glob01.8.minQN4.fac2.01.blastresult Monodelphis_domestica.glob02.2.minQN4.fac2.01.blastresult Monodelphis_domestica.glob03.4.minQN4.fac2.01.blastresult Monodelphis_domestica.glob04.Un.minQN4.fac2.01.blastresult Monodelphis_domestica.glob05.4.minQN4.fac2.02.blastresult Monodelphis_domestica.glob06.5.minQN4.fac2.01.blastresult Monodelphis_domestica.glob07.8.minQN4.fac2.02.blastresult Monodelphis_domestica.glob08.2.minQN4.fac2.02.blastresult Monodelphis_domestica.glob09.1.minQN4.fac2.01.blastresult Monodelphis_domestica.glob10.5.minQN4.fac2.02.blastresult Monodelphis_domestica.glob11.5.minQN4.fac2.03.blastresult Monodelphis_domestica.glob12.1.minQN4.fac2.02.blastresult Monodelphis_domestica.glob13.1.minQN4.fac2.03.blastresult Monodelphis_domestica.glob14.5.minQN4.fac2.04.blastresult Monodelphis_domestica.glob15.1.minQN4.fac2.04.blastresult Monodelphis_domestica.glob16.5.minQN4.fac2.05.blastresult Monodelphis_domestica.glob17.1.minQN4.fac2.05.blastresult Monodelphis_domestica.glob18.1.minQN4.fac2.06.blastresult Monodelphis_domestica.glob19.4.minQN4.fac2.03.blastresult Monodelphis_domestica.glob20.1.minQN4.fac2.07.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...chromosome Un: 811 105404669 106219307 106219567 10 10 811 0 (marked for saving) chromosome 5: 722 171301564 171709041 171709397 10 10 722 0 (marked for saving) 603 221693284 221750839 221751207 10 10 603 0 (marked for saving) 569 215863174 216233264 216233713 9 9 569 0 (marked for saving) 505 234707068 235125480 235126154 7 7 505 0 (marked for saving) 491 228236869 228311833 228328301 8 12 729 2 (marked for saving) 467 236904571 237690063 237717156 8 12 698 3.3 (marked for saving) chromosome 8: 1555 293020201 293153229 293354370 10 98 8593 24.6 (marked for saving) 681 211626973 211679521 211680003 10 10 681 0 (marked for saving) 439 217232848 217470960 217471229 7 7 439 0 (marked for saving) chromosome 2: 1324 200833910 201105070 201365718 10 101 8462 31.9 (marked for saving) 663 535363991 536178426 536178791 10 10 663 0 (marked for saving) 285 13593608 13719763 13719990 5 5 285 0 (marked for saving) chromosome 1: 609 25671197 26416408 26416785 10 10 609 0 (marked for saving) 564 375155714 375721100 375721477 9 9 564 0 (marked for saving) 562 738493877 739265209 739307069 9 17 1038 5.1 (marked for saving) 537 71031899 71401420 71401992 9 9 537 0 (marked for saving) 501 83719523 84486403 84506463 8 14 860 2.4 (marked for saving) 495 110411642 111097617 111211715 8 13 783 13.9 (marked for saving) 490 287520599 287967798 288163311 8 15 892 23.9 (marked for saving) 490 599912570 600246309 600369346 8 14 847 15 (marked for saving) 410 372758438 373070850 373071161 7 7 410 0 (marked for saving) 374 15344156 15474232 15474756 6 6 374 0 (marked for saving) 359 369937154 370592801 370593094 6 6 359 0 (marked for saving) 352 459052220 459641473 459641730 6 6 352 0 (marked for saving) chromosome 4: 3286 187038163 187208613 187739147 12 113 12229 65 (marked for saving) 811 287666677 288288681 288480685 10 21 1594 23.5 (marked for saving) 426 122397328 122523531 122523743 7 7 426 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 4 3286 187038163 187208613 187739147 12 113 12229 65 (saved) 8 1555 293020201 293153229 293354370 10 98 8593 24.6 (saved) 2 1324 200833910 201105070 201365718 10 101 8462 31.9 (saved) Un 811 105404669 106219307 106219567 10 10 811 0 (saved) 4 811 287666677 288288681 288480685 10 21 1594 23.5 (saved) 5 722 171301564 171709041 171709397 10 10 722 0 (saved) 8 681 211626973 211679521 211680003 10 10 681 0 (saved) 2 663 535363991 536178426 536178791 10 10 663 0 (saved) 1 609 25671197 26416408 26416785 10 10 609 0 (saved) 5 603 221693284 221750839 221751207 10 10 603 0 (saved) 5 569 215863174 216233264 216233713 9 9 569 0 (saved) 1 564 375155714 375721100 375721477 9 9 564 0 (saved) 1 562 738493877 739265209 739307069 9 17 1038 5.1 (saved) 1 537 71031899 71401420 71401992 9 9 537 0 (saved) 5 505 234707068 235125480 235126154 7 7 505 0 (saved) 1 501 83719523 84486403 84506463 8 14 860 2.4 (saved) 1 495 110411642 111097617 111211715 8 13 783 13.9 (saved) 5 491 228236869 228311833 228328301 8 12 729 2 (saved) 1 490 287520599 287967798 288163311 8 15 892 23.9 (saved) 1 490 599912570 600246309 600369346 8 14 847 15 (saved) 5 467 236904571 237690063 237717156 8 12 698 3.3 8 439 217232848 217470960 217471229 7 7 439 0 4 426 122397328 122523531 122523743 7 7 426 0 1 410 372758438 373070850 373071161 7 7 410 0 1 374 15344156 15474232 15474756 6 6 374 0 1 359 369937154 370592801 370593094 6 6 359 0 1 352 459052220 459641473 459641730 6 6 352 0 2 285 13593608 13719763 13719990 5 5 285 0 global files summary: Monodelphis_domestica.glob01.4.minQN4.fac2.01.blastresult Monodelphis_domestica.glob02.8.minQN4.fac2.01.blastresult Monodelphis_domestica.glob03.2.minQN4.fac2.01.blastresult Monodelphis_domestica.glob04.Un.minQN4.fac2.01.blastresult Monodelphis_domestica.glob05.4.minQN4.fac2.02.blastresult Monodelphis_domestica.glob06.5.minQN4.fac2.01.blastresult Monodelphis_domestica.glob07.8.minQN4.fac2.02.blastresult Monodelphis_domestica.glob08.2.minQN4.fac2.02.blastresult Monodelphis_domestica.glob09.1.minQN4.fac2.01.blastresult Monodelphis_domestica.glob10.5.minQN4.fac2.02.blastresult Monodelphis_domestica.glob11.5.minQN4.fac2.03.blastresult Monodelphis_domestica.glob12.1.minQN4.fac2.02.blastresult Monodelphis_domestica.glob13.1.minQN4.fac2.03.blastresult Monodelphis_domestica.glob14.1.minQN4.fac2.04.blastresult Monodelphis_domestica.glob15.5.minQN4.fac2.04.blastresult Monodelphis_domestica.glob16.1.minQN4.fac2.05.blastresult Monodelphis_domestica.glob17.1.minQN4.fac2.06.blastresult Monodelphis_domestica.glob18.5.minQN4.fac2.05.blastresult Monodelphis_domestica.glob19.1.minQN4.fac2.07.blastresult Monodelphis_domestica.glob20.1.minQN4.fac2.08.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..chromosome 15_random: 870 1 860702 861070 12 12 870 0 (marked for saving) chromosome 14: 558 7557343 9532617 9539001 10 15 823 0.3 (marked for saving) chromosome 20: 742 220577 2126326 2202991 12 21 1252 3.8 (marked for saving) chromosome 10: 712 907287 2872526 2888575 12 22 1260 0.8 (marked for saving) chromosome 1_random: 813 69490 456026 2050172 12 23 1444 80.2 (marked for saving) chromosome 1: 684 2419320 2875703 2875984 12 12 684 0 (marked for saving) 611 5049975 5447783 7033079 10 12 682 79.8 (marked for saving) chromosome 3: 1070 1 679890 695564 12 24 2128 0.7 (marked for saving) chromosome 6: 1020 2134306 2710879 4112649 12 28 1998 70.6 (marked for saving) chromosome 12: 801 39709 825448 829969 12 23 1441 0.2 (marked for saving) 392 10532548 12513433 12513798 7 7 392 0 (marked for saving) chromosome 7: 974 2357698 2377368 4251791 13 14 1048 94.4 (marked for saving) 726 8016088 9358249 9999393 12 26 1351 32.2 (marked for saving) chromosome 18: 776 2337084 2475698 4151248 12 35 2127 84.3 (marked for saving) chromosome 8: 1662 4654714 6599985 6636760 14 75 6409 1.8 (marked for saving) chromosome 17: 1159 7614010 7618605 9594639 12 37 2767 99.5 (marked for saving) 757 3762334 4607999 5202717 12 24 1454 29.9 (marked for saving) 601 734599 757598 757795 11 11 601 0 (marked for saving) 285 5559121 7536422 7536865 5 5 285 0 (marked for saving) chromosome 9: 1449 2268714 4183940 4253153 12 113 9611 3.4 (marked for saving) chromosome 21: 2606 1077716 2953732 3053565 13 125 12119 5 (marked for saving) chromosome 2: 1578 9857512 11075386 11405199 12 90 7099 16.6 (marked for saving) 1348 962920 1166948 1437034 13 55 4731 13.6 (marked for saving) 276 13272400 15252291 15252527 5 5 276 0 (marked for saving) chromosome Un_random: 1733 37007857 38028392 38193152 12 111 8955 8.2 (marked for saving) 1140 78731038 80676474 80677664 12 14 1286 0 (marked for saving) 887 108174520 108177032 110113492 12 13 939 97.5 (marked for saving) 736 42566977 43539291 43539680 12 12 736 0 (marked for saving) 685 45545077 46661773 46664073 11 22 1311 0.1 (marked for saving) 676 1 305862 731814 11 13 752 21.4 (marked for saving) 624 115599916 117131257 117131484 11 11 624 0 (marked for saving) 302 98436133 99341950 100416442 5 5 302 54.1 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 21 2606 1077716 2953732 3053565 13 125 12119 5 (saved) Un_random 1733 37007857 38028392 38193152 12 111 8955 8.2 (saved) 8 1662 4654714 6599985 6636760 14 75 6409 1.8 (saved) 2 1578 9857512 11075386 11405199 12 90 7099 16.6 (saved) 9 1449 2268714 4183940 4253153 12 113 9611 3.4 (saved) 2 1348 962920 1166948 1437034 13 55 4731 13.6 (saved) 17 1159 7614010 7618605 9594639 12 37 2767 99.5 (saved) Un_random 1140 78731038 80676474 80677664 12 14 1286 0 (saved) 3 1070 1 679890 695564 12 24 2128 0.7 (saved) 6 1020 2134306 2710879 4112649 12 28 1998 70.6 (saved) 7 974 2357698 2377368 4251791 13 14 1048 94.4 (saved) Un_random 887 108174520 108177032 110113492 12 13 939 97.5 (saved) 15_random 870 1 860702 861070 12 12 870 0 (saved) 1_random 813 69490 456026 2050172 12 23 1444 80.2 (saved) 12 801 39709 825448 829969 12 23 1441 0.2 (saved) 18 776 2337084 2475698 4151248 12 35 2127 84.3 (saved) 17 757 3762334 4607999 5202717 12 24 1454 29.9 (saved) 20 742 220577 2126326 2202991 12 21 1252 3.8 (saved) Un_random 736 42566977 43539291 43539680 12 12 736 0 (saved) 7 726 8016088 9358249 9999393 12 26 1351 32.2 (saved) 10 712 907287 2872526 2888575 12 22 1260 0.8 Un_random 685 45545077 46661773 46664073 11 22 1311 0.1 1 684 2419320 2875703 2875984 12 12 684 0 Un_random 676 1 305862 731814 11 13 752 21.4 Un_random 624 115599916 117131257 117131484 11 11 624 0 1 611 5049975 5447783 7033079 10 12 682 79.8 17 601 734599 757598 757795 11 11 601 0 14 558 7557343 9532617 9539001 10 15 823 0.3 12 392 10532548 12513433 12513798 7 7 392 0 Un_random 302 98436133 99341950 100416442 5 5 302 54.1 17 285 5559121 7536422 7536865 5 5 285 0 2 276 13272400 15252291 15252527 5 5 276 0 global files summary: Tetraodon_nigroviridis.glob01.21.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob02.Un_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob03.8.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob04.2.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob05.9.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob06.2.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob07.17.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob08.Un_random.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob09.3.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob10.6.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob11.7.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob12.Un_random.minQN4.fac2.03.blastresult Tetraodon_nigroviridis.glob13.15_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob14.1_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob15.12.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob16.18.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob17.17.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob18.20.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob19.Un_random.minQN4.fac2.04.blastresult Tetraodon_nigroviridis.glob20.7.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..chromosome 15_random: 744 288727 860702 860983 10 10 744 0 (marked for saving) chromosome 14: 397 8966358 9532617 9539001 7 13 721 1.1 (marked for saving) chromosome 10: 575 2315003 2872508 2888575 10 15 860 2.7 (marked for saving) chromosome 20: 561 1629127 2126323 2202979 9 17 1031 13.3 (marked for saving) chromosome 1_random: 678 1475389 2049789 2050184 10 10 678 0 (marked for saving) 452 316361 456041 456331 8 8 452 0 (marked for saving) chromosome 3: 842 122292 679905 695510 10 20 1678 2.7 (marked for saving) chromosome 1: 568 2637293 2875748 2876215 10 10 568 0 (marked for saving) 501 6499761 6790336 6790587 8 8 501 0 (marked for saving) chromosome 6: 870 2251185 2710798 2711244 10 10 870 0 (marked for saving) 623 3539633 3997497 4112649 10 14 839 20 (marked for saving) chromosome 12: 622 316778 825463 829969 9 18 1152 0.7 (marked for saving) 327 11941570 12513466 12513963 6 6 327 0 (marked for saving) chromosome 7: 750 4007360 4251468 4251755 10 10 750 0 (marked for saving) 590 9350968 9358372 9358671 10 10 590 0 (marked for saving) 310 9425744 9999004 9999340 6 10 442 0 (marked for saving) chromosome 18: 617 4089612 4148493 4151245 10 19 1123 0.4 (marked for saving) 603 2004512 2475746 2476117 10 10 603 0 (marked for saving) 531 4538268 5111056 5111301 9 9 531 0 (marked for saving) chromosome 8: 1032 6055167 6607022 6627492 10 51 4102 3.5 (marked for saving) chromosome 17: 1005 9020626 9571355 9594639 10 22 1779 4 (marked for saving) 605 4358630 4607924 4608370 10 10 605 0 (marked for saving) 583 5184042 5202385 5202750 10 10 583 0 (marked for saving) 542 7145474 7536392 7618955 9 16 927 14.3 (marked for saving) 442 366742 757529 757819 8 8 442 0 (marked for saving) chromosome 9: 1223 3678560 4184078 4253192 10 94 8139 12 (marked for saving) chromosome 21: 1567 2478762 2978891 3053436 10 100 8910 12.9 (marked for saving) chromosome 2: 1284 1014791 1166948 1444911 11 46 4338 48.3 (marked for saving) 1164 10801819 11075386 11117989 10 73 5553 7.4 (marked for saving) 217 14678667 15252381 15252527 4 4 217 0 (marked for saving) chromosome Un_random: 1734 37684229 38028407 38178153 10 96 8384 26 (marked for saving) 983 80306549 80676474 80677664 10 12 1131 0.2 (marked for saving) 802 109903465 110113334 110113540 10 10 802 0 (marked for saving) 613 247337 305964 306239 10 10 613 0 (marked for saving) 601 43361453 43539405 43539680 10 10 601 0 (marked for saving) 553 46182809 46661866 46664088 9 18 1071 0.3 (marked for saving) 444 117104969 117131257 117131484 8 8 444 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange Un_random 1734 37684229 38028407 38178153 10 96 8384 26 (saved) 21 1567 2478762 2978891 3053436 10 100 8910 12.9 (saved) 2 1284 1014791 1166948 1444911 11 46 4338 48.3 (saved) 9 1223 3678560 4184078 4253192 10 94 8139 12 (saved) 2 1164 10801819 11075386 11117989 10 73 5553 7.4 (saved) 8 1032 6055167 6607022 6627492 10 51 4102 3.5 (saved) 17 1005 9020626 9571355 9594639 10 22 1779 4 (saved) Un_random 983 80306549 80676474 80677664 10 12 1131 0.2 (saved) 6 870 2251185 2710798 2711244 10 10 870 0 (saved) 3 842 122292 679905 695510 10 20 1678 2.7 (saved) Un_random 802 109903465 110113334 110113540 10 10 802 0 (saved) 7 750 4007360 4251468 4251755 10 10 750 0 (saved) 15_random 744 288727 860702 860983 10 10 744 0 (saved) 1_random 678 1475389 2049789 2050184 10 10 678 0 (saved) 6 623 3539633 3997497 4112649 10 14 839 20 (saved) 12 622 316778 825463 829969 9 18 1152 0.7 (saved) 18 617 4089612 4148493 4151245 10 19 1123 0.4 (saved) Un_random 613 247337 305964 306239 10 10 613 0 (saved) 17 605 4358630 4607924 4608370 10 10 605 0 (saved) 18 603 2004512 2475746 2476117 10 10 603 0 (saved) Un_random 601 43361453 43539405 43539680 10 10 601 0 7 590 9350968 9358372 9358671 10 10 590 0 17 583 5184042 5202385 5202750 10 10 583 0 10 575 2315003 2872508 2888575 10 15 860 2.7 1 568 2637293 2875748 2876215 10 10 568 0 20 561 1629127 2126323 2202979 9 17 1031 13.3 Un_random 553 46182809 46661866 46664088 9 18 1071 0.3 17 542 7145474 7536392 7618955 9 16 927 14.3 18 531 4538268 5111056 5111301 9 9 531 0 1 501 6499761 6790336 6790587 8 8 501 0 1_random 452 316361 456041 456331 8 8 452 0 Un_random 444 117104969 117131257 117131484 8 8 444 0 17 442 366742 757529 757819 8 8 442 0 14 397 8966358 9532617 9539001 7 13 721 1.1 12 327 11941570 12513466 12513963 6 6 327 0 7 310 9425744 9999004 9999340 6 10 442 0 2 217 14678667 15252381 15252527 4 4 217 0 global files summary: Tetraodon_nigroviridis.glob01.Un_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob02.21.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob03.2.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob04.9.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob05.2.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob06.8.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob07.17.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob08.Un_random.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob09.6.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob10.3.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob11.Un_random.minQN4.fac2.03.blastresult Tetraodon_nigroviridis.glob12.7.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob13.15_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob14.1_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob15.6.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob16.12.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob17.18.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob18.Un_random.minQN4.fac2.04.blastresult Tetraodon_nigroviridis.glob19.17.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob20.18.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ........chromosome 14: 446 8377861 9532617 9539004 8 10 554 0.5 (marked for saving) chromosome 15_random: 659 1 767347 861058 10 10 659 8 (marked for saving) chromosome 1_random: 570 886769 2049786 2049980 9 9 570 0 (marked for saving) 222 437551 456038 456397 4 4 222 0 (marked for saving) chromosome 20: 485 1041605 2126326 2202982 8 14 823 6.5 (marked for saving) chromosome 10: 529 2230274 2573276 2888575 9 14 808 27 (marked for saving) chromosome 6: 740 1999660 2710876 2711259 9 9 740 0 (marked for saving) 539 2950602 3997503 4112583 9 10 593 9.8 (marked for saving) chromosome 3: 865 1 679890 697538 9 20 1827 1.5 (marked for saving) chromosome 12: 501 437551 825463 829954 8 16 956 0.3 (marked for saving) chromosome 7: 631 3627636 4251462 4251755 9 9 631 0 (marked for saving) 524 9274948 9358360 9999319 9 16 842 54.9 (marked for saving) chromosome 1: 648 5705653 5770251 6790581 7 10 1001 87.4 (marked for saving) 495 2508621 2875739 2875981 9 9 495 0 (marked for saving) chromosome 18: 553 3949619 4148535 5111310 9 25 1456 82.5 (marked for saving) 544 1785205 2475794 2476117 9 9 544 0 (marked for saving) chromosome 8: 1119 5550869 6606129 6713312 11 51 4237 9.1 (marked for saving) chromosome 17: 857 8430131 9571355 9594639 9 22 1720 1.9 (marked for saving) 550 4486347 4608062 5202687 9 18 1048 50.9 (marked for saving) 337 437551 757556 757819 6 6 337 0 (marked for saving) 301 7426683 7536449 7618946 5 7 415 7 (marked for saving) chromosome 21: 1514 1940940 1946347 3104249 13 94 7995 99.2 (marked for saving) chromosome 9: 2442 3483874 4148559 4311213 13 98 9842 13.9 (marked for saving) chromosome 2: 1349 10373325 10999363 11117989 11 70 5692 10.1 (marked for saving) 1146 863905 1166951 1435728 11 41 3392 23 (marked for saving) chromosome Un_random: 1411 37903499 37976867 38178237 11 78 6268 17.2 (marked for saving) 774 79564093 79657149 80677138 10 11 826 87.4 (marked for saving) 703 109235817 110113334 110113492 9 9 703 0 (marked for saving) 591 43451633 43539357 44526905 10 10 591 84.6 (marked for saving) 487 45511035 46661827 46664133 8 15 874 0.1 (marked for saving) 365 291701 305976 1352326 6 9 508 89.6 (marked for saving) 324 116895859 117131257 117131463 6 6 324 0 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 9 2442 3483874 4148559 4311213 13 98 9842 13.9 (saved) 21 1514 1940940 1946347 3104249 13 94 7995 99.2 (saved) Un_random 1411 37903499 37976867 38178237 11 78 6268 17.2 (saved) 2 1349 10373325 10999363 11117989 11 70 5692 10.1 (saved) 2 1146 863905 1166951 1435728 11 41 3392 23 (saved) 8 1119 5550869 6606129 6713312 11 51 4237 9.1 (saved) 3 865 1 679890 697538 9 20 1827 1.5 (saved) 17 857 8430131 9571355 9594639 9 22 1720 1.9 (saved) Un_random 774 79564093 79657149 80677138 10 11 826 87.4 (saved) 6 740 1999660 2710876 2711259 9 9 740 0 (saved) Un_random 703 109235817 110113334 110113492 9 9 703 0 (saved) 15_random 659 1 767347 861058 10 10 659 8 (saved) 1 648 5705653 5770251 6790581 7 10 1001 87.4 (saved) 7 631 3627636 4251462 4251755 9 9 631 0 (saved) Un_random 591 43451633 43539357 44526905 10 10 591 84.6 (saved) 1_random 570 886769 2049786 2049980 9 9 570 0 (saved) 18 553 3949619 4148535 5111310 9 25 1456 82.5 (saved) 17 550 4486347 4608062 5202687 9 18 1048 50.9 (saved) 18 544 1785205 2475794 2476117 9 9 544 0 (saved) 6 539 2950602 3997503 4112583 9 10 593 9.8 (saved) 10 529 2230274 2573276 2888575 9 14 808 27 7 524 9274948 9358360 9999319 9 16 842 54.9 12 501 437551 825463 829954 8 16 956 0.3 1 495 2508621 2875739 2875981 9 9 495 0 Un_random 487 45511035 46661827 46664133 8 15 874 0.1 20 485 1041605 2126326 2202982 8 14 823 6.5 14 446 8377861 9532617 9539004 8 10 554 0.5 Un_random 365 291701 305976 1352326 6 9 508 89.6 17 337 437551 757556 757819 6 6 337 0 Un_random 324 116895859 117131257 117131463 6 6 324 0 17 301 7426683 7536449 7618946 5 7 415 7 1_random 222 437551 456038 456397 4 4 222 0 global files summary: Tetraodon_nigroviridis.glob01.9.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob02.21.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob03.Un_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob04.2.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob05.2.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob06.8.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob07.3.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob08.17.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob09.Un_random.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob10.6.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob11.Un_random.minQN4.fac2.03.blastresult Tetraodon_nigroviridis.glob12.15_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob13.1.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob14.7.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob15.Un_random.minQN4.fac2.04.blastresult Tetraodon_nigroviridis.glob16.1_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob17.18.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob18.17.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob19.18.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob20.6.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange chromosome 15_random: 688 49611 860696 861070 10 10 688 0 (marked for saving) chromosome 14: 453 8725561 9532617 9539001 8 11 615 0.7 (marked for saving) chromosome 1_random: 637 1235332 2049789 2050124 10 10 637 0 (marked for saving) 346 4078 456059 456337 6 6 346 0 (marked for saving) chromosome 20: 544 1388606 2126311 2203399 9 17 987 9.4 (marked for saving) chromosome 10: 525 2073723 2872514 2888575 9 17 968 1.9 (marked for saving) chromosome 1: 506 2845747 2875742 2875978 9 9 506 0 (marked for saving) 468 5976883 6790297 6790611 8 8 468 0 (marked for saving) chromosome 6: 804 2703068 2710849 2711238 10 10 804 0 (marked for saving) 603 3298310 3997503 4112583 10 12 709 14.1 (marked for saving) chromosome 3: 898 4078 679911 697538 10 22 1918 2.1 (marked for saving) chromosome 12: 575 491384 825490 830014 9 18 1091 0.5 (marked for saving) 338 11699057 12513031 12513816 6 6 338 0 (marked for saving) chromosome 7: 715 3558598 4251504 4251752 10 10 715 0 (marked for saving) 595 9184858 9358366 9999370 10 21 1042 78.6 (marked for saving) chromosome 18: 622 2427120 2475647 2476105 10 10 622 0 (marked for saving) 563 4000842 4148472 4151245 9 17 1025 0.3 (marked for saving) 515 4298463 5111032 5111280 9 9 515 0 (marked for saving) chromosome 8: 1078 5812212 6607022 6627162 10 53 4348 2.4 (marked for saving) chromosome 17: 1055 8785936 9564414 9598839 12 31 2216 4.2 (marked for saving) 624 4549933 4607993 5202954 10 20 1203 72.9 (marked for saving) 355 6914593 7536410 7624839 6 9 528 10.8 (marked for saving) 279 721630 757556 757795 5 5 279 0 (marked for saving) chromosome 9: 1241 3438519 4184090 4253147 10 97 8118 8.4 (marked for saving) chromosome 21: 1555 2241246 2648861 3053346 11 100 8571 49.6 (marked for saving) chromosome 2: 1838 10958154 11075386 11132794 11 79 6849 7 (marked for saving) 907 1034736 1421792 1435644 10 40 3134 1.6 (marked for saving) chromosome Un_random: 1236 38022103 38028536 38193032 10 88 6690 20.1 (marked for saving) 961 80459596 80676474 80677664 10 12 1189 0.1 (marked for saving) 713 109879228 110113334 110113540 10 10 713 0 (marked for saving) 654 46534879 46661728 46957025 11 20 1154 36.2 (marked for saving) 605 42881887 43539339 43539671 10 10 605 0 (marked for saving) 455 116997670 117131257 117131478 8 8 455 0 (marked for saving) 425 110080 305847 731760 7 10 559 52.2 (marked for saving) 373 99217873 99341899 99350360 6 7 428 1 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 2 1838 10958154 11075386 11132794 11 79 6849 7 (saved) 21 1555 2241246 2648861 3053346 11 100 8571 49.6 (saved) 9 1241 3438519 4184090 4253147 10 97 8118 8.4 (saved) Un_random 1236 38022103 38028536 38193032 10 88 6690 20.1 (saved) 8 1078 5812212 6607022 6627162 10 53 4348 2.4 (saved) 17 1055 8785936 9564414 9598839 12 31 2216 4.2 (saved) Un_random 961 80459596 80676474 80677664 10 12 1189 0.1 (saved) 2 907 1034736 1421792 1435644 10 40 3134 1.6 (saved) 3 898 4078 679911 697538 10 22 1918 2.1 (saved) 6 804 2703068 2710849 2711238 10 10 804 0 (saved) 7 715 3558598 4251504 4251752 10 10 715 0 (saved) Un_random 713 109879228 110113334 110113540 10 10 713 0 (saved) 15_random 688 49611 860696 861070 10 10 688 0 (saved) Un_random 654 46534879 46661728 46957025 11 20 1154 36.2 (saved) 1_random 637 1235332 2049789 2050124 10 10 637 0 (saved) 17 624 4549933 4607993 5202954 10 20 1203 72.9 (saved) 18 622 2427120 2475647 2476105 10 10 622 0 (saved) Un_random 605 42881887 43539339 43539671 10 10 605 0 (saved) 6 603 3298310 3997503 4112583 10 12 709 14.1 (saved) 7 595 9184858 9358366 9999370 10 21 1042 78.6 (saved) 12 575 491384 825490 830014 9 18 1091 0.5 18 563 4000842 4148472 4151245 9 17 1025 0.3 20 544 1388606 2126311 2203399 9 17 987 9.4 10 525 2073723 2872514 2888575 9 17 968 1.9 18 515 4298463 5111032 5111280 9 9 515 0 1 506 2845747 2875742 2875978 9 9 506 0 1 468 5976883 6790297 6790611 8 8 468 0 Un_random 455 116997670 117131257 117131478 8 8 455 0 14 453 8725561 9532617 9539001 8 11 615 0.7 Un_random 425 110080 305847 731760 7 10 559 52.2 Un_random 373 99217873 99341899 99350360 6 7 428 1 17 355 6914593 7536410 7624839 6 9 528 10.8 1_random 346 4078 456059 456337 6 6 346 0 12 338 11699057 12513031 12513816 6 6 338 0 17 279 721630 757556 757795 5 5 279 0 global files summary: Tetraodon_nigroviridis.glob01.2.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob02.21.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob03.9.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob04.Un_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob05.8.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob06.17.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob07.Un_random.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob08.2.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob09.3.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob10.6.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob11.7.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob12.Un_random.minQN4.fac2.03.blastresult Tetraodon_nigroviridis.glob13.15_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob14.Un_random.minQN4.fac2.04.blastresult Tetraodon_nigroviridis.glob15.1_random.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob16.17.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob17.18.minQN4.fac2.01.blastresult Tetraodon_nigroviridis.glob18.Un_random.minQN4.fac2.05.blastresult Tetraodon_nigroviridis.glob19.6.minQN4.fac2.02.blastresult Tetraodon_nigroviridis.glob20.7.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .........chromosome scaffold_10: 221 2013694 3989016 3989156 4 4 221 0 (marked for saving) chromosome scaffold_563: 397 1 228679 228906 7 7 397 0 (marked for saving) chromosome scaffold_238: 509 1 1471824 1472054 8 8 509 0 (marked for saving) chromosome scaffold_364: 498 1 813096 813494 8 8 498 0 (marked for saving) chromosome scaffold_134: 477 341777 2317063 2317407 8 8 477 0 (marked for saving) chromosome scaffold_313: 506 1 1027133 1027423 8 8 506 0 (marked for saving) chromosome scaffold_2223: 503 1 8418 8678 8 8 503 0 (marked for saving) chromosome scaffold_481: 533 1 995524 995985 9 9 533 0 (marked for saving) chromosome scaffold_191: 528 1 413280 413495 9 9 528 0 (marked for saving) chromosome scaffold_668: 641 1 378328 378678 10 10 641 0 (marked for saving) chromosome scaffold_16920: 705 1 2298 2789 11 11 705 0 (marked for saving) chromosome scaffold_237: 760 1 1667542 1668261 11 11 760 0 (marked for saving) chromosome scaffold_28: 679 1887577 3862848 3863123 11 11 679 0 (marked for saving) chromosome scaffold_441: 736 1 696987 697301 12 12 736 0 (marked for saving) chromosome scaffold_107: 913 1 809918 810163 12 12 913 0 (marked for saving) chromosome scaffold_2875: 865 1 696 1157 12 12 865 0 (marked for saving) chromosome scaffold_145: 673 1 1711770 1740551 11 18 1086 1.4 (marked for saving) chromosome scaffold_486: 669 1 306222 354780 11 19 1137 2.4 (marked for saving) chromosome scaffold_271: 699 1 1215219 1246604 11 21 1293 1.5 (marked for saving) chromosome scaffold_230: 748 1 617754 1439579 12 21 1271 41.3 (marked for saving) chromosome scaffold_30: 747 1353367 3308739 3332512 12 22 1336 1.1 (marked for saving) chromosome scaffold_15: 871 1 1932836 1945545 12 24 1729 0.6 (marked for saving) chromosome scaffold_316: 722 1 424131 790057 11 30 1895 18.4 (marked for saving) chromosome scaffold_80: 1112 1023949 2006532 3000832 13 30 2343 50 (marked for saving) chromosome scaffold_583: 676 1 391416 414387 11 33 1949 1.1 (marked for saving) chromosome scaffold_163: 1875 1 534718 664035 12 104 9293 6.5 (marked for saving) chromosome scaffold_334: 1728 1 486970 585008 12 125 11688 4.9 (marked for saving) chromosome scaffold_226: 1609 1 280901 558409 12 126 10847 13.9 (marked for saving) chromosome scaffold_56: 3368 1 1151389 1730155 14 156 16145 29.1 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_56 3368 1 1151389 1730155 14 156 16145 29.1 (saved) scaffold_163 1875 1 534718 664035 12 104 9293 6.5 (saved) scaffold_334 1728 1 486970 585008 12 125 11688 4.9 (saved) scaffold_226 1609 1 280901 558409 12 126 10847 13.9 (saved) scaffold_80 1112 1023949 2006532 3000832 13 30 2343 50 (saved) scaffold_107 913 1 809918 810163 12 12 913 0 (saved) scaffold_15 871 1 1932836 1945545 12 24 1729 0.6 (saved) scaffold_2875 865 1 696 1157 12 12 865 0 (saved) scaffold_237 760 1 1667542 1668261 11 11 760 0 (saved) scaffold_230 748 1 617754 1439579 12 21 1271 41.3 (saved) scaffold_30 747 1353367 3308739 3332512 12 22 1336 1.1 (saved) scaffold_441 736 1 696987 697301 12 12 736 0 (saved) scaffold_316 722 1 424131 790057 11 30 1895 18.4 (saved) scaffold_16920 705 1 2298 2789 11 11 705 0 (saved) scaffold_271 699 1 1215219 1246604 11 21 1293 1.5 (saved) scaffold_28 679 1887577 3862848 3863123 11 11 679 0 (saved) scaffold_583 676 1 391416 414387 11 33 1949 1.1 (saved) scaffold_145 673 1 1711770 1740551 11 18 1086 1.4 (saved) scaffold_486 669 1 306222 354780 11 19 1137 2.4 (saved) scaffold_668 641 1 378328 378678 10 10 641 0 (saved) scaffold_481 533 1 995524 995985 9 9 533 0 scaffold_191 528 1 413280 413495 9 9 528 0 scaffold_238 509 1 1471824 1472054 8 8 509 0 scaffold_313 506 1 1027133 1027423 8 8 506 0 scaffold_2223 503 1 8418 8678 8 8 503 0 scaffold_364 498 1 813096 813494 8 8 498 0 scaffold_134 477 341777 2317063 2317407 8 8 477 0 scaffold_563 397 1 228679 228906 7 7 397 0 scaffold_10 221 2013694 3989016 3989156 4 4 221 0 global files summary: Xenopus_tropicalis.glob01.scaffold_56.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob02.scaffold_163.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob03.scaffold_334.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob04.scaffold_226.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob05.scaffold_80.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob06.scaffold_107.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob07.scaffold_15.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob08.scaffold_2875.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob09.scaffold_237.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob10.scaffold_230.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob11.scaffold_30.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob12.scaffold_441.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob13.scaffold_316.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob14.scaffold_16920.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob15.scaffold_271.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob16.scaffold_28.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob17.scaffold_583.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob18.scaffold_145.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob19.scaffold_486.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob20.scaffold_668.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ......chromosome scaffold_10: 228 3416966 3989016 3989213 4 4 228 0 (marked for saving) chromosome scaffold_563: 227 1 228700 228906 4 4 227 0 (marked for saving) chromosome scaffold_559: 224 1 439669 439791 4 4 224 0 (marked for saving) chromosome scaffold_191: 293 1 413121 413513 5 5 293 0 (marked for saving) chromosome scaffold_134: 414 1745040 2317063 2317284 7 7 414 0 (marked for saving) chromosome scaffold_16920: 527 1 2340 2795 8 8 527 0 (marked for saving) chromosome scaffold_238: 507 899822 1471824 1472099 8 8 507 0 (marked for saving) chromosome scaffold_313: 500 455209 1027139 1027420 8 8 500 0 (marked for saving) chromosome scaffold_481: 467 423603 995599 995895 8 8 467 0 (marked for saving) chromosome scaffold_2223: 501 1 8460 8678 8 8 501 0 (marked for saving) chromosome scaffold_364: 539 241184 813144 813422 9 9 539 0 (marked for saving) chromosome scaffold_668: 573 1 378376 378684 9 9 573 0 (marked for saving) chromosome scaffold_237: 623 1095798 1667608 1668285 9 9 623 0.1 (marked for saving) chromosome scaffold_28: 557 3290840 3862785 3863048 9 9 557 0 (marked for saving) chromosome scaffold_441: 601 125018 696987 697259 10 10 601 0 (marked for saving) chromosome scaffold_107: 775 237940 809924 810160 10 10 775 0 (marked for saving) chromosome scaffold_2875: 728 1 729 1157 10 10 728 0 (marked for saving) chromosome scaffold_486: 586 1 306219 354624 10 16 930 8.4 (marked for saving) chromosome scaffold_145: 545 1165823 1711848 1740272 9 16 945 4.9 (marked for saving) chromosome scaffold_271: 569 672001 1215234 1246649 9 18 1099 5.4 (marked for saving) chromosome scaffold_30: 567 2759775 3308748 3332506 9 18 1093 4.1 (marked for saving) chromosome scaffold_230: 598 865637 1439142 1439468 10 10 598 0 (marked for saving) 521 250173 617751 618245 9 9 521 0 (marked for saving) chromosome scaffold_15: 762 1372383 1932836 1945545 10 20 1507 2.2 (marked for saving) chromosome scaffold_80: 862 2427575 2904675 3000835 10 24 1867 16.7 (marked for saving) chromosome scaffold_316: 585 215701 424173 790057 9 26 1624 63.6 (marked for saving) chromosome scaffold_583: 555 1 391419 414369 9 27 1593 3.9 (marked for saving) chromosome scaffold_163: 1431 89157 534745 661780 10 87 7520 22 (marked for saving) chromosome scaffold_226: 1362 1 281000 558409 10 106 9235 48.2 (marked for saving) chromosome scaffold_334: 1894 17257 486967 589462 10 108 11210 17.8 (marked for saving) chromosome scaffold_56: 1648 908066 1324797 1481229 10 122 11372 27.2 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_334 1894 17257 486967 589462 10 108 11210 17.8 (saved) scaffold_56 1648 908066 1324797 1481229 10 122 11372 27.2 (saved) scaffold_163 1431 89157 534745 661780 10 87 7520 22 (saved) scaffold_226 1362 1 281000 558409 10 106 9235 48.2 (saved) scaffold_80 862 2427575 2904675 3000835 10 24 1867 16.7 (saved) scaffold_107 775 237940 809924 810160 10 10 775 0 (saved) scaffold_15 762 1372383 1932836 1945545 10 20 1507 2.2 (saved) scaffold_2875 728 1 729 1157 10 10 728 0 (saved) scaffold_237 623 1095798 1667608 1668285 9 9 623 0.1 (saved) scaffold_441 601 125018 696987 697259 10 10 601 0 (saved) scaffold_230 598 865637 1439142 1439468 10 10 598 0 (saved) scaffold_486 586 1 306219 354624 10 16 930 8.4 (saved) scaffold_316 585 215701 424173 790057 9 26 1624 63.6 (saved) scaffold_668 573 1 378376 378684 9 9 573 0 (saved) scaffold_271 569 672001 1215234 1246649 9 18 1099 5.4 (saved) scaffold_30 567 2759775 3308748 3332506 9 18 1093 4.1 (saved) scaffold_28 557 3290840 3862785 3863048 9 9 557 0 (saved) scaffold_583 555 1 391419 414369 9 27 1593 3.9 (saved) scaffold_145 545 1165823 1711848 1740272 9 16 945 4.9 (saved) scaffold_364 539 241184 813144 813422 9 9 539 0 (saved) scaffold_16920 527 1 2340 2795 8 8 527 0 scaffold_230 521 250173 617751 618245 9 9 521 0 scaffold_238 507 899822 1471824 1472099 8 8 507 0 scaffold_2223 501 1 8460 8678 8 8 501 0 scaffold_313 500 455209 1027139 1027420 8 8 500 0 scaffold_481 467 423603 995599 995895 8 8 467 0 scaffold_134 414 1745040 2317063 2317284 7 7 414 0 scaffold_191 293 1 413121 413513 5 5 293 0 scaffold_10 228 3416966 3989016 3989213 4 4 228 0 scaffold_563 227 1 228700 228906 4 4 227 0 scaffold_559 224 1 439669 439791 4 4 224 0 global files summary: Xenopus_tropicalis.glob01.scaffold_334.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob02.scaffold_56.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob03.scaffold_163.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob04.scaffold_226.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob05.scaffold_80.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob06.scaffold_107.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob07.scaffold_15.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob08.scaffold_2875.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob09.scaffold_237.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob10.scaffold_441.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob11.scaffold_230.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob12.scaffold_486.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob13.scaffold_316.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob14.scaffold_668.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob15.scaffold_271.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob16.scaffold_30.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob17.scaffold_28.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob18.scaffold_583.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob19.scaffold_145.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob20.scaffold_364.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ..............................chromosome scaffold_134: 229 1156452 2317066 2317302 4 4 229 0 (marked for saving) ...chromosome scaffold_238: 303 311237 1471842 1472090 5 5 303 0 (marked for saving) chromosome scaffold_313: 310 1 1027199 1027420 5 5 310 0 (marked for saving) chromosome scaffold_2223: 308 1 8457 8669 5 5 308 0 (marked for saving) .chromosome scaffold_16920: 367 1 2499 2789 6 6 367 0 (marked for saving) chromosome scaffold_364: 346 1 813132 813437 6 6 346 0 (marked for saving) chromosome scaffold_668: 359 1 378319 378687 6 6 359 0 (marked for saving) chromosome scaffold_237: 455 507207 1667614 1668063 7 7 455 0 (marked for saving) chromosome scaffold_28: 425 2702252 3862842 3863060 7 7 425 0 (marked for saving) chromosome scaffold_481: 460 1 995533 995862 8 8 460 0 (marked for saving) chromosome scaffold_441: 535 1 696996 697352 9 9 535 0 (marked for saving) chromosome scaffold_107: 641 1 809924 810163 9 9 641 0 (marked for saving) chromosome scaffold_2875: 603 1 687 1148 9 9 603 0 (marked for saving) chromosome scaffold_486: 360 1 306213 354600 6 10 596 4.1 (marked for saving) chromosome scaffold_145: 466 574687 1711755 1740236 8 12 696 2.4 (marked for saving) chromosome scaffold_161: 671 941341 1967281 2103539 4 12 1337 11.6 (marked for saving) chromosome scaffold_30: 478 2171524 3308706 3332491 8 14 824 2 (marked for saving) chromosome scaffold_271: 481 83832 1215174 1246640 8 15 881 2.6 (marked for saving) chromosome scaffold_230: 543 274199 617961 1439513 9 16 941 70.4 (marked for saving) chromosome scaffold_316: 489 1 424332 790066 8 18 1104 31.3 (marked for saving) chromosome scaffold_583: 416 1 391419 414336 7 18 1040 1.9 (marked for saving) chromosome scaffold_15: 604 958976 1932848 1945533 9 18 1200 1 (marked for saving) chromosome scaffold_80: 724 1837423 2904675 3000829 9 20 1488 8.2 (marked for saving) chromosome scaffold_163: 1548 1 19498 652653 11 84 7550 54.2 (marked for saving) chromosome scaffold_226: 2361 1 280901 557959 9 99 10381 23.7 (marked for saving) chromosome scaffold_334: 1341 1 198979 589462 11 100 8853 33.4 (marked for saving) chromosome scaffold_56: 1664 799259 1080173 1965575 13 117 10246 75.8 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_226 2361 1 280901 557959 9 99 10381 23.7 (saved) scaffold_56 1664 799259 1080173 1965575 13 117 10246 75.8 (saved) scaffold_163 1548 1 19498 652653 11 84 7550 54.2 (saved) scaffold_334 1341 1 198979 589462 11 100 8853 33.4 (saved) scaffold_80 724 1837423 2904675 3000829 9 20 1488 8.2 (saved) scaffold_161 671 941341 1967281 2103539 4 12 1337 11.6 (saved) scaffold_107 641 1 809924 810163 9 9 641 0 (saved) scaffold_15 604 958976 1932848 1945533 9 18 1200 1 (saved) scaffold_2875 603 1 687 1148 9 9 603 0 (saved) scaffold_230 543 274199 617961 1439513 9 16 941 70.4 (saved) scaffold_441 535 1 696996 697352 9 9 535 0 (saved) scaffold_316 489 1 424332 790066 8 18 1104 31.3 (saved) scaffold_271 481 83832 1215174 1246640 8 15 881 2.6 (saved) scaffold_30 478 2171524 3308706 3332491 8 14 824 2 (saved) scaffold_145 466 574687 1711755 1740236 8 12 696 2.4 (saved) scaffold_481 460 1 995533 995862 8 8 460 0 (saved) scaffold_237 455 507207 1667614 1668063 7 7 455 0 (saved) scaffold_28 425 2702252 3862842 3863060 7 7 425 0 (saved) scaffold_583 416 1 391419 414336 7 18 1040 1.9 (saved) scaffold_16920 367 1 2499 2789 6 6 367 0 (saved) scaffold_486 360 1 306213 354600 6 10 596 4.1 scaffold_668 359 1 378319 378687 6 6 359 0 scaffold_364 346 1 813132 813437 6 6 346 0 scaffold_313 310 1 1027199 1027420 5 5 310 0 scaffold_2223 308 1 8457 8669 5 5 308 0 scaffold_238 303 311237 1471842 1472090 5 5 303 0 scaffold_134 229 1156452 2317066 2317302 4 4 229 0 global files summary: Xenopus_tropicalis.glob01.scaffold_226.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob02.scaffold_56.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob03.scaffold_163.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob04.scaffold_334.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob05.scaffold_80.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob06.scaffold_161.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob07.scaffold_107.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob08.scaffold_15.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob09.scaffold_2875.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob10.scaffold_230.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob11.scaffold_441.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob12.scaffold_316.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob13.scaffold_271.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob14.scaffold_30.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob15.scaffold_145.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob16.scaffold_481.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob17.scaffold_237.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob18.scaffold_28.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob19.scaffold_583.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob20.scaffold_16920.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...chromosome scaffold_134: 234 1505909 2317066 2317227 4 4 234 0 (marked for saving) chromosome scaffold_563: 285 4078 228679 228906 5 5 285 0 (marked for saving) chromosome scaffold_2223: 368 4078 8217 8666 6 6 368 0 (marked for saving) chromosome scaffold_16920: 402 1 2265 2798 6 6 402 0 (marked for saving) chromosome scaffold_238: 368 660682 1471809 1472084 6 6 368 0 (marked for saving) chromosome scaffold_364: 372 4078 813123 813428 6 6 372 0 (marked for saving) chromosome scaffold_313: 363 216078 1027148 1027420 6 6 363 0 (marked for saving) chromosome scaffold_191: 404 4078 413280 413501 7 7 404 0 (marked for saving) chromosome scaffold_481: 465 184481 995593 995859 8 8 465 0 (marked for saving) chromosome scaffold_237: 528 856667 1667503 1668258 8 8 528 0 (marked for saving) chromosome scaffold_28: 484 3051709 3862803 3863060 8 8 484 0 (marked for saving) chromosome scaffold_668: 490 4078 378388 378672 8 8 490 0 (marked for saving) chromosome scaffold_441: 565 4078 696999 697337 9 9 565 0 (marked for saving) chromosome scaffold_2875: 682 1 681 1163 10 10 682 0 (marked for saving) chromosome scaffold_107: 712 4078 809918 810136 10 10 712 0 (marked for saving) chromosome scaffold_486: 540 4078 306258 354591 9 13 775 5.9 (marked for saving) chromosome scaffold_145: 488 925270 1711818 1740299 8 15 893 3.4 (marked for saving) chromosome scaffold_230: 563 627859 1439202 1439546 9 9 563 0 (marked for saving) 411 4078 617964 618242 7 7 411 0 (marked for saving) chromosome scaffold_30: 556 2518021 3308685 3332521 9 17 1019 2.9 (marked for saving) chromosome scaffold_271: 605 432658 1215231 1246616 10 19 1129 3.8 (marked for saving) chromosome scaffold_15: 680 1133961 1932830 1945551 10 20 1344 1.5 (marked for saving) chromosome scaffold_583: 532 4078 391419 414369 9 21 1236 2.8 (marked for saving) chromosome scaffold_316: 526 4078 424098 790024 8 21 1304 44.8 (marked for saving) chromosome scaffold_80: 803 2187307 2904675 3000835 10 21 1585 11.7 (marked for saving) chromosome scaffold_163: 2562 4078 476364 744115 12 100 9932 32.8 (marked for saving) chromosome scaffold_334: 1290 4078 486988 589462 10 104 8913 12.5 (marked for saving) chromosome scaffold_226: 1428 4078 281096 558409 10 105 8988 34 (marked for saving) chromosome scaffold_56: 1618 667659 1323527 1481190 10 117 10294 19.3 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange scaffold_163 2562 4078 476364 744115 12 100 9932 32.8 (saved) scaffold_56 1618 667659 1323527 1481190 10 117 10294 19.3 (saved) scaffold_226 1428 4078 281096 558409 10 105 8988 34 (saved) scaffold_334 1290 4078 486988 589462 10 104 8913 12.5 (saved) scaffold_80 803 2187307 2904675 3000835 10 21 1585 11.7 (saved) scaffold_107 712 4078 809918 810136 10 10 712 0 (saved) scaffold_2875 682 1 681 1163 10 10 682 0 (saved) scaffold_15 680 1133961 1932830 1945551 10 20 1344 1.5 (saved) scaffold_271 605 432658 1215231 1246616 10 19 1129 3.8 (saved) scaffold_441 565 4078 696999 697337 9 9 565 0 (saved) scaffold_230 563 627859 1439202 1439546 9 9 563 0 (saved) scaffold_30 556 2518021 3308685 3332521 9 17 1019 2.9 (saved) scaffold_486 540 4078 306258 354591 9 13 775 5.9 (saved) scaffold_583 532 4078 391419 414369 9 21 1236 2.8 (saved) scaffold_237 528 856667 1667503 1668258 8 8 528 0 (saved) scaffold_316 526 4078 424098 790024 8 21 1304 44.8 (saved) scaffold_668 490 4078 378388 378672 8 8 490 0 (saved) scaffold_145 488 925270 1711818 1740299 8 15 893 3.4 (saved) scaffold_28 484 3051709 3862803 3863060 8 8 484 0 (saved) scaffold_481 465 184481 995593 995859 8 8 465 0 (saved) scaffold_230 411 4078 617964 618242 7 7 411 0 scaffold_191 404 4078 413280 413501 7 7 404 0 scaffold_16920 402 1 2265 2798 6 6 402 0 scaffold_364 372 4078 813123 813428 6 6 372 0 scaffold_2223 368 4078 8217 8666 6 6 368 0 scaffold_238 368 660682 1471809 1472084 6 6 368 0 scaffold_313 363 216078 1027148 1027420 6 6 363 0 scaffold_563 285 4078 228679 228906 5 5 285 0 scaffold_134 234 1505909 2317066 2317227 4 4 234 0 global files summary: Xenopus_tropicalis.glob01.scaffold_163.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob02.scaffold_56.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob03.scaffold_226.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob04.scaffold_334.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob05.scaffold_80.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob06.scaffold_107.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob07.scaffold_2875.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob08.scaffold_15.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob09.scaffold_271.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob10.scaffold_441.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob11.scaffold_230.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob12.scaffold_30.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob13.scaffold_486.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob14.scaffold_583.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob15.scaffold_237.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob16.scaffold_316.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob17.scaffold_668.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob18.scaffold_145.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob19.scaffold_28.minQN4.fac2.01.blastresult Xenopus_tropicalis.glob20.scaffold_481.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 992689 nt (1'985'378 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .....chromosome 17: 585 25196567 26566959 26567327 10 10 585 0 (marked for saving) ...chromosome 19: 850 43323040 43331993 45287560 12 30 1902 98.4 (marked for saving) chromosome 12: 672 57224598 57451089 57530361 11 18 1081 3.9 (marked for saving) chromosome 1: 869 90719472 91759875 91760318 12 12 869 0 (marked for saving) 801 121433610 121615088 122434732 12 13 900 41.2 (marked for saving) chromosome 13: 739 52072540 53475721 53476092 12 12 739 0 (marked for saving) chromosome 7: 939 130921183 131335100 132436298 12 32 2198 55.4 (marked for saving) 749 137919718 139899111 139899464 12 12 749 0 (marked for saving) chromosome 14: 680 66190474 68127961 68145536 11 21 1271 0.8 (marked for saving) 305 53255593 53279284 55230307 4 7 521 98.2 (marked for saving) chromosome 15: 1509 100887813 102749222 102864071 12 114 9793 5.7 (marked for saving) chromosome 5: 1160 147382378 147500117 149361107 13 30 2380 93.7 (marked for saving) 926 73565206 75358635 75358988 12 12 926 0 (marked for saving) 901 22937506 24014741 24015301 12 12 901 0 (marked for saving) 786 33738082 33747540 35709041 11 19 1295 98.7 (marked for saving) 721 36656620 38109564 38109905 12 12 721 0 (marked for saving) 690 27881152 28500887 29805707 11 15 912 65.7 (marked for saving) 636 41352091 42049896 42050309 10 10 636 0 (marked for saving) 564 105728686 106695751 107622331 9 10 638 46.6 (marked for saving) chromosome 11: 1894 94927974 96010695 96547315 13 128 11808 27 (marked for saving) 719 32685684 33102056 33338845 10 11 777 11.9 (marked for saving) chromosome 2: 1842 73948072 74456458 74565225 12 118 10255 5.4 (marked for saving) 622 27440077 28629326 28733565 10 12 783 5.2 (marked for saving) 621 145789771 146775593 146875996 10 18 1095 5 (marked for saving) chromosome 6: 4681 51696874 51789593 52559931 14 162 18393 38.8 (marked for saving) 895 81527509 81806533 83053687 13 23 1529 62.8 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 6 4681 51696874 51789593 52559931 14 162 18393 38.8 (saved) 11 1894 94927974 96010695 96547315 13 128 11808 27 (saved) 2 1842 73948072 74456458 74565225 12 118 10255 5.4 (saved) 15 1509 100887813 102749222 102864071 12 114 9793 5.7 (saved) 5 1160 147382378 147500117 149361107 13 30 2380 93.7 (saved) 7 939 130921183 131335100 132436298 12 32 2198 55.4 (saved) 5 926 73565206 75358635 75358988 12 12 926 0 (saved) 5 901 22937506 24014741 24015301 12 12 901 0 (saved) 6 895 81527509 81806533 83053687 13 23 1529 62.8 (saved) 1 869 90719472 91759875 91760318 12 12 869 0 (saved) 19 850 43323040 43331993 45287560 12 30 1902 98.4 (saved) 1 801 121433610 121615088 122434732 12 13 900 41.2 (saved) 5 786 33738082 33747540 35709041 11 19 1295 98.7 (saved) 7 749 137919718 139899111 139899464 12 12 749 0 (saved) 13 739 52072540 53475721 53476092 12 12 739 0 (saved) 5 721 36656620 38109564 38109905 12 12 721 0 (saved) 11 719 32685684 33102056 33338845 10 11 777 11.9 (saved) 5 690 27881152 28500887 29805707 11 15 912 65.7 (saved) 14 680 66190474 68127961 68145536 11 21 1271 0.8 (saved) 12 672 57224598 57451089 57530361 11 18 1081 3.9 (saved) 5 636 41352091 42049896 42050309 10 10 636 0 2 622 27440077 28629326 28733565 10 12 783 5.2 2 621 145789771 146775593 146875996 10 18 1095 5 17 585 25196567 26566959 26567327 10 10 585 0 5 564 105728686 106695751 107622331 9 10 638 46.6 14 305 53255593 53279284 55230307 4 7 521 98.2 global files summary: Mus_musculus.glob01.6.minQN4.fac2.01.blastresult Mus_musculus.glob02.11.minQN4.fac2.01.blastresult Mus_musculus.glob03.2.minQN4.fac2.01.blastresult Mus_musculus.glob04.15.minQN4.fac2.01.blastresult Mus_musculus.glob05.5.minQN4.fac2.01.blastresult Mus_musculus.glob06.7.minQN4.fac2.01.blastresult Mus_musculus.glob07.5.minQN4.fac2.02.blastresult Mus_musculus.glob08.5.minQN4.fac2.03.blastresult Mus_musculus.glob09.6.minQN4.fac2.02.blastresult Mus_musculus.glob10.1.minQN4.fac2.01.blastresult Mus_musculus.glob11.19.minQN4.fac2.01.blastresult Mus_musculus.glob12.1.minQN4.fac2.02.blastresult Mus_musculus.glob13.5.minQN4.fac2.04.blastresult Mus_musculus.glob14.7.minQN4.fac2.02.blastresult Mus_musculus.glob15.13.minQN4.fac2.01.blastresult Mus_musculus.glob16.5.minQN4.fac2.05.blastresult Mus_musculus.glob17.11.minQN4.fac2.02.blastresult Mus_musculus.glob18.5.minQN4.fac2.06.blastresult Mus_musculus.glob19.14.minQN4.fac2.01.blastresult Mus_musculus.glob20.12.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 287532 nt (575'064 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange ...chromosome 17: 574 25993265 26566959 26567315 10 10 574 0 (marked for saving) chromosome 13: 601 52902236 53475724 53476137 10 10 601 0 (marked for saving) chromosome 12: 537 56955722 57451470 57530358 9 14 832 13.7 (marked for saving) chromosome 1: 747 91239668 91759671 91760360 10 10 747 0.1 (marked for saving) 553 121860440 122434439 122434663 9 9 553 0 (marked for saving) chromosome 14: 557 67570562 68127970 68145431 9 18 1071 3 (marked for saving) chromosome 19: 575 44714877 45206619 45287671 9 17 1047 14 (marked for saving) 542 43394793 43667640 43668044 9 9 542 0 (marked for saving) chromosome 7: 627 131303923 131335031 131346972 10 18 1123 2 (marked for saving) 627 132255879 132435603 132436040 9 9 627 0 (marked for saving) 623 139325087 139899198 139899476 10 10 623 0 (marked for saving) chromosome 5: 889 147038875 147500120 147613697 10 25 1944 19.7 (marked for saving) 777 75242411 75358653 75358910 10 10 777 0 (marked for saving) 760 23474411 24014573 24015352 10 10 760 0.1 (marked for saving) 616 28403875 28500920 28501252 10 10 616 0 (marked for saving) 597 38009715 38109609 38109905 10 10 597 0 (marked for saving) 588 33597931 33747864 33748520 8 8 588 0.1 (marked for saving) 568 41754267 42050049 42050312 9 9 568 0 (marked for saving) 494 35421315 35708799 35709023 8 8 494 0 (marked for saving) 228 106326219 106695751 106696086 4 4 228 0 (marked for saving) chromosome 15: 1264 102290631 102749366 102864077 10 96 8317 19.9 (marked for saving) chromosome 2: 1445 74142806 74458603 74565135 10 97 8338 18.5 (marked for saving) 535 146301646 146775356 146875987 9 15 884 17.4 (marked for saving) 355 28572586 28733299 28733790 6 6 355 0 (marked for saving) chromosome 11: 3634 95678740 95949846 96183226 12 116 13831 40.5 (marked for saving) 503 32691464 33102320 33102961 8 8 503 0.1 (marked for saving) chromosome 6: 1624 51980353 52086248 52245575 10 121 11325 27.7 (marked for saving) 558 82480333 83034450 83053687 9 15 905 3.3 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 11 3634 95678740 95949846 96183226 12 116 13831 40.5 (saved) 6 1624 51980353 52086248 52245575 10 121 11325 27.7 (saved) 2 1445 74142806 74458603 74565135 10 97 8338 18.5 (saved) 15 1264 102290631 102749366 102864077 10 96 8317 19.9 (saved) 5 889 147038875 147500120 147613697 10 25 1944 19.7 (saved) 5 777 75242411 75358653 75358910 10 10 777 0 (saved) 5 760 23474411 24014573 24015352 10 10 760 0.1 (saved) 1 747 91239668 91759671 91760360 10 10 747 0.1 (saved) 7 627 131303923 131335031 131346972 10 18 1123 2 (saved) 7 627 132255879 132435603 132436040 9 9 627 0 (saved) 7 623 139325087 139899198 139899476 10 10 623 0 (saved) 5 616 28403875 28500920 28501252 10 10 616 0 (saved) 13 601 52902236 53475724 53476137 10 10 601 0 (saved) 5 597 38009715 38109609 38109905 10 10 597 0 (saved) 5 588 33597931 33747864 33748520 8 8 588 0.1 (saved) 19 575 44714877 45206619 45287671 9 17 1047 14 (saved) 17 574 25993265 26566959 26567315 10 10 574 0 (saved) 5 568 41754267 42050049 42050312 9 9 568 0 (saved) 6 558 82480333 83034450 83053687 9 15 905 3.3 (saved) 14 557 67570562 68127970 68145431 9 18 1071 3 (saved) 1 553 121860440 122434439 122434663 9 9 553 0 19 542 43394793 43667640 43668044 9 9 542 0 12 537 56955722 57451470 57530358 9 14 832 13.7 2 535 146301646 146775356 146875987 9 15 884 17.4 11 503 32691464 33102320 33102961 8 8 503 0.1 5 494 35421315 35708799 35709023 8 8 494 0 2 355 28572586 28733299 28733790 6 6 355 0 5 228 106326219 106695751 106696086 4 4 228 0 global files summary: Mus_musculus.glob01.11.minQN4.fac2.01.blastresult Mus_musculus.glob02.6.minQN4.fac2.01.blastresult Mus_musculus.glob03.2.minQN4.fac2.01.blastresult Mus_musculus.glob04.15.minQN4.fac2.01.blastresult Mus_musculus.glob05.5.minQN4.fac2.01.blastresult Mus_musculus.glob06.5.minQN4.fac2.02.blastresult Mus_musculus.glob07.5.minQN4.fac2.03.blastresult Mus_musculus.glob08.1.minQN4.fac2.01.blastresult Mus_musculus.glob09.7.minQN4.fac2.01.blastresult Mus_musculus.glob10.7.minQN4.fac2.02.blastresult Mus_musculus.glob11.7.minQN4.fac2.03.blastresult Mus_musculus.glob12.5.minQN4.fac2.04.blastresult Mus_musculus.glob13.13.minQN4.fac2.01.blastresult Mus_musculus.glob14.5.minQN4.fac2.05.blastresult Mus_musculus.glob15.5.minQN4.fac2.06.blastresult Mus_musculus.glob16.19.minQN4.fac2.01.blastresult Mus_musculus.glob17.17.minQN4.fac2.01.blastresult Mus_musculus.glob18.5.minQN4.fac2.07.blastresult Mus_musculus.glob19.6.minQN4.fac2.02.blastresult Mus_musculus.glob20.14.minQN4.fac2.01.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 583305 nt (1'166'610 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .....chromosome 17: 465 26058134 26566956 26567402 8 8 465 0 (marked for saving) ..chromosome 19: 437 44123706 45206652 45287545 7 12 726 6.9 (marked for saving) 405 42589364 43667616 43667990 7 7 405 0 (marked for saving) chromosome 12: 412 56883938 57451482 57530403 7 12 700 6.7 (marked for saving) .chromosome 14: 479 67785423 68128000 68145500 8 16 928 1.5 (marked for saving) .chromosome 13: 534 53209139 53475850 53476182 9 9 534 0 (marked for saving) chromosome 1: 598 90836790 91759887 91760309 9 9 598 0 (marked for saving) 425 121494460 122434451 122434669 7 7 425 0 (marked for saving) chromosome 7: 543 138735469 139899132 139899467 9 9 543 0 (marked for saving) 504 131279617 131335139 132436073 8 20 1236 94.3 (marked for saving) chromosome 5: 738 147088167 147500120 147613649 9 21 1548 9.7 (marked for saving) 642 74804907 75358662 75358886 9 9 642 0 (marked for saving) 631 23920759 24014750 24015298 9 9 631 0 (marked for saving) 519 36971417 38109651 38109905 9 9 519 0 (marked for saving) 509 32829277 33747864 33748394 8 8 509 0 (marked for saving) 481 28447943 28500935 28501231 8 8 481 0 (marked for saving) 360 41883645 42049971 42050312 6 6 360 0 (marked for saving) 249 35297059 35708799 35709011 4 4 249 0 (marked for saving) chromosome 15: 4733 101913862 102535406 103079076 14 116 14232 46.6 (marked for saving) chromosome 11: 1427 95845471 96010539 96636276 11 101 8805 53.6 (marked for saving) 311 31992341 33102293 33102745 5 5 311 0 (marked for saving) chromosome 2: 1726 74372479 74469431 75477744 11 91 8215 86.4 (marked for saving) 476 146579897 146775617 146876002 7 12 762 8.6 (marked for saving) chromosome 6: 1595 51113102 51387539 52189921 12 113 9993 68.7 (marked for saving) 777 82873398 83034711 83998116 10 17 1207 82.5 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 15 4733 101913862 102535406 103079076 14 116 14232 46.6 (saved) 2 1726 74372479 74469431 75477744 11 91 8215 86.4 (saved) 6 1595 51113102 51387539 52189921 12 113 9993 68.7 (saved) 11 1427 95845471 96010539 96636276 11 101 8805 53.6 (saved) 6 777 82873398 83034711 83998116 10 17 1207 82.5 (saved) 5 738 147088167 147500120 147613649 9 21 1548 9.7 (saved) 5 642 74804907 75358662 75358886 9 9 642 0 (saved) 5 631 23920759 24014750 24015298 9 9 631 0 (saved) 1 598 90836790 91759887 91760309 9 9 598 0 (saved) 7 543 138735469 139899132 139899467 9 9 543 0 (saved) 13 534 53209139 53475850 53476182 9 9 534 0 (saved) 5 519 36971417 38109651 38109905 9 9 519 0 (saved) 5 509 32829277 33747864 33748394 8 8 509 0 (saved) 7 504 131279617 131335139 132436073 8 20 1236 94.3 (saved) 5 481 28447943 28500935 28501231 8 8 481 0 (saved) 14 479 67785423 68128000 68145500 8 16 928 1.5 (saved) 2 476 146579897 146775617 146876002 7 12 762 8.6 (saved) 17 465 26058134 26566956 26567402 8 8 465 0 (saved) 19 437 44123706 45206652 45287545 7 12 726 6.9 (saved) 1 425 121494460 122434451 122434669 7 7 425 0 (saved) 12 412 56883938 57451482 57530403 7 12 700 6.7 19 405 42589364 43667616 43667990 7 7 405 0 5 360 41883645 42049971 42050312 6 6 360 0 11 311 31992341 33102293 33102745 5 5 311 0 5 249 35297059 35708799 35709011 4 4 249 0 global files summary: Mus_musculus.glob01.15.minQN4.fac2.01.blastresult Mus_musculus.glob02.2.minQN4.fac2.01.blastresult Mus_musculus.glob03.6.minQN4.fac2.01.blastresult Mus_musculus.glob04.11.minQN4.fac2.01.blastresult Mus_musculus.glob05.6.minQN4.fac2.02.blastresult Mus_musculus.glob06.5.minQN4.fac2.01.blastresult Mus_musculus.glob07.5.minQN4.fac2.02.blastresult Mus_musculus.glob08.5.minQN4.fac2.03.blastresult Mus_musculus.glob09.1.minQN4.fac2.01.blastresult Mus_musculus.glob10.7.minQN4.fac2.01.blastresult Mus_musculus.glob11.13.minQN4.fac2.01.blastresult Mus_musculus.glob12.5.minQN4.fac2.04.blastresult Mus_musculus.glob13.5.minQN4.fac2.05.blastresult Mus_musculus.glob14.7.minQN4.fac2.02.blastresult Mus_musculus.glob15.5.minQN4.fac2.06.blastresult Mus_musculus.glob16.14.minQN4.fac2.01.blastresult Mus_musculus.glob17.2.minQN4.fac2.02.blastresult Mus_musculus.glob18.17.minQN4.fac2.01.blastresult Mus_musculus.glob19.19.minQN4.fac2.01.blastresult Mus_musculus.glob20.1.minQN4.fac2.02.blastresult # Done! # using /homes/biertank/joe/PROJECTS/SynBlast/HOXexNEW/newRun/tblastn as source directory for the blastresult files... ######################################## # Probable Syntenic Regions # -of maximum size 2 x 407698 nt (815'396 nt) # -containing at least 4 hits of different query ######################################## Regions sorted by SumOfMaxBitScoresPerQuery (and secondarily by totalScore) (only up to those with fullfilled QN-constraint, skipping overlapping ones): SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofMaxRange .....chromosome 13: 566 52663337 53475739 53476167 9 9 566 0 (marked for saving) chromosome 17: 524 26485612 26566956 26567417 9 9 524 0 (marked for saving) .chromosome 12: 554 56717352 57451059 57530382 9 16 961 9.7 (marked for saving) chromosome 1: 680 91657973 91759869 91760312 10 10 680 0 (marked for saving) 426 121619846 122434457 122434669 7 7 426 0 (marked for saving) chromosome 14: 551 67332214 68127982 68145467 9 17 1011 2.1 (marked for saving) chromosome 19: 557 44474285 45206523 45287572 9 14 844 9.9 (marked for saving) 528 43479497 43667598 43667918 9 9 528 0 (marked for saving) chromosome 7: 609 139088031 139899174 139899455 10 10 609 0 (marked for saving) 519 131932896 132435462 132436136 8 8 519 0 (marked for saving) 506 131019648 131335181 131346939 8 14 865 1.4 (marked for saving) chromosome 5: 807 146801976 147500123 147613649 10 21 1595 13.9 (marked for saving) 727 75107931 75358653 75358940 10 10 727 0 (marked for saving) 700 23378955 24014735 24015187 10 10 700 0 (marked for saving) 632 33498069 33747600 33748514 9 9 632 0.1 (marked for saving) 549 41684685 42049956 42050312 9 9 549 0 (marked for saving) 548 37558761 38109564 38109905 9 9 548 0 (marked for saving) 546 27814731 28500863 28501156 9 9 546 0 (marked for saving) 304 35373489 35708799 35709044 5 5 304 0 (marked for saving) 288 106472292 106695751 106696086 5 5 288 0 (marked for saving) chromosome 15: 1280 102048714 102749444 102864023 10 97 8241 14 (marked for saving) chromosome 11: 1360 95370630 96010704 96183205 10 104 8823 21.1 (marked for saving) 377 32393211 33102188 33103177 6 6 377 0.1 (marked for saving) chromosome 2: 4181 74285822 74322901 74677310 13 113 13128 43.4 (marked for saving) 437 146061407 146775359 146875993 7 13 790 12.3 (marked for saving) 404 28452188 28733350 28733571 7 7 404 0 (marked for saving) chromosome 6: 1556 51805677 52086299 52246434 10 118 10287 19.6 (marked for saving) 536 82240482 83034333 83053669 9 16 932 2.3 (marked for saving) globally-best-20-regions: ============================= chr SumOfMaxScores start rstart end QN totalHSPcount totalscore %ofRange 2 4181 74285822 74322901 74677310 13 113 13128 43.4 (saved) 6 1556 51805677 52086299 52246434 10 118 10287 19.6 (saved) 11 1360 95370630 96010704 96183205 10 104 8823 21.1 (saved) 15 1280 102048714 102749444 102864023 10 97 8241 14 (saved) 5 807 146801976 147500123 147613649 10 21 1595 13.9 (saved) 5 727 75107931 75358653 75358940 10 10 727 0 (saved) 5 700 23378955 24014735 24015187 10 10 700 0 (saved) 1 680 91657973 91759869 91760312 10 10 680 0 (saved) 5 632 33498069 33747600 33748514 9 9 632 0.1 (saved) 7 609 139088031 139899174 139899455 10 10 609 0 (saved) 13 566 52663337 53475739 53476167 9 9 566 0 (saved) 19 557 44474285 45206523 45287572 9 14 844 9.9 (saved) 12 554 56717352 57451059 57530382 9 16 961 9.7 (saved) 14 551 67332214 68127982 68145467 9 17 1011 2.1 (saved) 5 549 41684685 42049956 42050312 9 9 549 0 (saved) 5 548 37558761 38109564 38109905 9 9 548 0 (saved) 5 546 27814731 28500863 28501156 9 9 546 0 (saved) 6 536 82240482 83034333 83053669 9 16 932 2.3 (saved) 19 528 43479497 43667598 43667918 9 9 528 0 (saved) 17 524 26485612 26566956 26567417 9 9 524 0 (saved) 7 519 131932896 132435462 132436136 8 8 519 0 7 506 131019648 131335181 131346939 8 14 865 1.4 2 437 146061407 146775359 146875993 7 13 790 12.3 1 426 121619846 122434457 122434669 7 7 426 0 2 404 28452188 28733350 28733571 7 7 404 0 11 377 32393211 33102188 33103177 6 6 377 0.1 5 304 35373489 35708799 35709044 5 5 304 0 5 288 106472292 106695751 106696086 5 5 288 0 global files summary: Mus_musculus.glob01.2.minQN4.fac2.01.blastresult Mus_musculus.glob02.6.minQN4.fac2.01.blastresult Mus_musculus.glob03.11.minQN4.fac2.01.blastresult Mus_musculus.glob04.15.minQN4.fac2.01.blastresult Mus_musculus.glob05.5.minQN4.fac2.01.blastresult Mus_musculus.glob06.5.minQN4.fac2.02.blastresult Mus_musculus.glob07.5.minQN4.fac2.03.blastresult Mus_musculus.glob08.1.minQN4.fac2.01.blastresult Mus_musculus.glob09.5.minQN4.fac2.04.blastresult Mus_musculus.glob10.7.minQN4.fac2.01.blastresult Mus_musculus.glob11.13.minQN4.fac2.01.blastresult Mus_musculus.glob12.19.minQN4.fac2.01.blastresult Mus_musculus.glob13.12.minQN4.fac2.01.blastresult Mus_musculus.glob14.14.minQN4.fac2.01.blastresult Mus_musculus.glob15.5.minQN4.fac2.05.blastresult Mus_musculus.glob16.5.minQN4.fac2.06.blastresult Mus_musculus.glob17.5.minQN4.fac2.07.blastresult Mus_musculus.glob18.6.minQN4.fac2.02.blastresult Mus_musculus.glob19.19.minQN4.fac2.02.blastresult Mus_musculus.glob20.17.minQN4.fac2.01.blastresult # Done!