>creating p-loci data structure...done -> selfscore (ENSP00000272748) successfully validated... -> selfscore (ENSP00000312385) successfully validated... -> selfscore (ENSP00000249505) successfully validated... -> selfscore (ENSP00000303578) successfully validated... -> selfscore (ENSP00000249504) successfully validated... -> selfscore (ENSP00000249501) successfully validated... -> selfscore (ENSP00000249499) successfully validated... -> selfscore (ENSP00000316098) successfully validated... -> selfscore (ENSP00000315949) successfully validated... -> selfscore (ENSP00000302548) successfully validated... -> selfscore (ENSP00000249440) successfully validated... -> selfscore (ENSP00000328598) successfully validated... -> selfscore (ENSP00000346209) successfully validated... -> selfscore (ENSP00000249442) successfully validated... >fetching global-besthit data for all queries against Gallus_gallus...>warning: tblastn/HOX.Gallus_gallus.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Gallus_gallus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Gallus_gallus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Gallus_gallus)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Macaca_mulatta...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Macaca_mulatta)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Macaca_mulatta)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >Could not get slice! >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Bos_taurus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Bos_taurus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Bos_taurus)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "ChrUn.82333" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "ChrUn.44" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Danio_rerio...>warning: tblastn/HOX.Danio_rerio.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Danio_rerio)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Homo_sapiens...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Homo_sapiens)...none >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Takifugu_rubripes...>warning: tblastn/HOX.Takifugu_rubripes.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) >warning: tblastn/HOX.Takifugu_rubripes.blastresult contains no data (at least for query "ENSP00000346209"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Takifugu_rubripes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Takifugu_rubripes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Takifugu_rubripes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Takifugu_rubripes)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_4108" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_4108" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_3809" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_3809" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_95" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_95" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_3110" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_3110" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_6" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_13" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_107" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_24" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_26" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_7389" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_3613" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_116" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >fetching global-besthit data for all queries against Oryzias_latipes...>warning: tblastn/HOX.Oryzias_latipes.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) >warning: tblastn/HOX.Oryzias_latipes.blastresult contains no data (at least for query "ENSP00000346209"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Oryzias_latipes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Oryzias_latipes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Oryzias_latipes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Oryzias_latipes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Oryzias_latipes)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold1004" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold571" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "ultracontig256" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Canis_familiaris...>warning: tblastn/HOX.Canis_familiaris.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Canis_familiaris)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Canis_familiaris)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Canis_familiaris)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Gasterosteus_aculeatus...>warning: tblastn/HOX.Gasterosteus_aculeatus.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Gasterosteus_aculeatus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Gasterosteus_aculeatus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Gasterosteus_aculeatus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Gasterosteus_aculeatus)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_9872" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_9872" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_9872" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_6417" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_6417" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_6417" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_6417" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2644" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2644" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_4903" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_4903" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_4903" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_9874" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_9874" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_9874" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2645" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2645" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >fetching global-besthit data for all queries against Monodelphis_domestica...>warning: tblastn/HOX.Monodelphis_domestica.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Monodelphis_domestica)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Monodelphis_domestica)...ok >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...Argument "Un" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Tetraodon_nigroviridis...>warning: tblastn/HOX.Tetraodon_nigroviridis.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Tetraodon_nigroviridis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Tetraodon_nigroviridis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Tetraodon_nigroviridis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Tetraodon_nigroviridis)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Note: comparaResult did not give exactly one result type! Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "15_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "1_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Xenopus_tropicalis...>warning: tblastn/HOX.Xenopus_tropicalis.blastresult contains no data (at least for query "ENSP00000316098"! (getBestBlastHit) >warning: tblastn/HOX.Xenopus_tropicalis.blastresult contains no data (at least for query "ENSP00000346209"! (getBestBlastHit) done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Xenopus_tropicalis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Xenopus_tropicalis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Xenopus_tropicalis)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_80" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_107" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_2875" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_15" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_271" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_441" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_230" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_30" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_486" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_583" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_237" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_316" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_668" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_145" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_28" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_481" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >fetching global-besthit data for all queries against Mus_musculus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000144320, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000174279, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128714, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170178, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128713, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128710, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128709, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175892, targetOrg=Mus_musculus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000175879, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000170166, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128652, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128645, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000182553, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000128654, targetOrg=Mus_musculus)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. >Could not get slice! >"ENSG00000128709-homologs/comparaHits/Homo_sapiens.ENSP00000249499.fa" did already exist, skip downloading... >"ENSG00000128709-homologs/comparaHits/Homo_sapiens.ENSP00000249499.fa" did already exist, skip downloading... Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_4108" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. >"ENSG00000128709-homologs/unknownHits/Gasterosteus_aculeatus.ENSGACP00000015743.fa" did already exist, skip downloading... Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999.