>creating p-loci data structure...done -> selfscore (ENSP00000262059) successfully validated... -> selfscore (ENSP00000243056) successfully validated... -> selfscore (ENSP00000243103) successfully validated... -> selfscore (ENSP00000243082) successfully validated... -> selfscore (ENSP00000307321) successfully validated... -> selfscore (ENSP00000302836) successfully validated... -> selfscore (ENSP00000040584) successfully validated... -> selfscore (ENSP00000243108) successfully validated... -> selfscore (ENSP00000309336) successfully validated... -> selfscore (ENSP00000305973) successfully validated... -> selfscore (ENSP00000338606) successfully validated... -> selfscore (ENSP00000209875) successfully validated... WARNING: Best-reference-hit is not on the same chromosome/contig as the reference! -> the selfscore for query protein "ENSP00000341826" is NOT valid! -> selfscore (ENSP00000312436) successfully validated... >fetching global-besthit data for all queries against Gallus_gallus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Gallus_gallus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Gallus_gallus)...none >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Macaca_mulatta...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Macaca_mulatta)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Macaca_mulatta)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >Could not get slice! >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Bos_taurus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Bos_taurus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Bos_taurus)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "ChrUn.82333" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >fetching global-besthit data for all queries against Danio_rerio...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Danio_rerio)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Danio_rerio)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Danio_rerio)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Homo_sapiens...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Homo_sapiens)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Homo_sapiens)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Homo_sapiens)...none >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "NT_113886" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Takifugu_rubripes...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Takifugu_rubripes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Takifugu_rubripes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Takifugu_rubripes)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_130" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_346" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_4108" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_4108" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_3809" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_3809" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_95" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_95" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_3110" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_3110" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_5" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_5" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_107" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_13" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_6" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_7389" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_26" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_24" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_3613" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >fetching global-besthit data for all queries against Oryzias_latipes...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Oryzias_latipes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Oryzias_latipes)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Oryzias_latipes)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Oryzias_latipes)...none >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold1004" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "ultracontig256" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Canis_familiaris...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Canis_familiaris)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Canis_familiaris)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Gasterosteus_aculeatus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Gasterosteus_aculeatus)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Gasterosteus_aculeatus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Gasterosteus_aculeatus)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2642" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2642" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2642" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2642" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupV" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2646" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2646" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2646" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2646" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_2345" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2645" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2645" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_9874" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_9874" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "contig_9874" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_2644" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_2644" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_6417" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_6417" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >fetching global-besthit data for all queries against Monodelphis_domestica...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Monodelphis_domestica)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Monodelphis_domestica)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Monodelphis_domestica)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Monodelphis_domestica)...none >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...Argument "Un" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Tetraodon_nigroviridis...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Tetraodon_nigroviridis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Tetraodon_nigroviridis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Tetraodon_nigroviridis)...ok >chaining blast-hits together...done >calculating gene order alignments...done Note: comparaResult did not give exactly one result type! >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "15_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "1_random" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >fetching global-besthit data for all queries against Xenopus_tropicalis...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Xenopus_tropicalis)...none >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Xenopus_tropicalis)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Xenopus_tropicalis)...ok >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_80" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_161" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done Argument "scaffold_161" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_161" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_161" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. Argument "scaffold_161" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 1150. >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_107" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_15" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_2875" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_230" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_441" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_316" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_271" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_30" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_145" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_481" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_237" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_28" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_583" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >chaining blast-hits together...done >calculating gene order alignments...Argument "scaffold_16920" isn't numeric in int at /scr/mojito/joe/src/perl/lib/perl5/5.8.8/SynBlast/MySyntenyAln.pm line 465. done >fetching global-besthit data for all queries against Mus_musculus...done >fetching EnsemblCompara-homologs for (GeneID=ENSG00000012822, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123364, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123407, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123388, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180818, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000180806, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000037965, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000197757, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000172789, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000198353, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123415, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000094916, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000135486, targetOrg=Mus_musculus)...ok >fetching EnsemblCompara-homologs for (GeneID=ENSG00000123405, targetOrg=Mus_musculus)...ok >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done >chaining blast-hits together...done >calculating gene order alignments...done Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. >Could not get slice! >"ENSG00000180806-homologs/comparaHits/Homo_sapiens.ENSP00000302836.fa" did already exist, skip downloading... >"ENSG00000180806-homologs/comparaHits/Homo_sapiens.ENSP00000302836.fa" did already exist, skip downloading... Argument "scaffold_66" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_4108" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_39" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_48" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_12" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_41" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_100" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_2643" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXII" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_2644" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_4905" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_9877" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupVI" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. >"ENSG00000180806-homologs/unknownHits/Gasterosteus_aculeatus.ENSGACP00000015743.fa" did already exist, skip downloading... Argument "groupXX" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_1095" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_2344" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupX" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXI" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "contig_5303" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "groupXVI" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- -------------------- WARNING --------------------- MSG: Got a sequence with no letters in it cannot guess alphabet [] --------------------------------------------------- Argument "Un_random" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_226" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_334" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_163" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999. Argument "scaffold_56" isn't numeric in int at /scr/mojito/joe/src/perl/bin/doSyntenyAlignment.pl line 999.