For any question please contact manja@bioinf.uni-leipzig.de
Organism | Source | Version | Release | Kind | Download |
Homo sapiens | NCBI 36 | 2 | September 2006 | Chromosomes | Download link |
Pan troglodytes | UCSC | panTro1 | November 2004 | Chromosomes | Download link |
Bos taurus | Ensembl | 3.1 | July 2007 | Chromosomes | Download link |
Canis familiaris | Ensembl | CanFam 2.0 | July 2007 | Chromosomes | Download link |
Rattus norvegicus | UCSC | rn3 | June 2003 | Chromosomes | Download link |
Mus musculus | UCSC | mm3,Build 33 | May 2004 | Chromosomes | Download link |
Monodelphis doemstica | Ensembl | monDom5 | July 2007 | Chromosomes | Download link |
Ornithorhynchus anatinus | Ensembl | 5.0 | July 2007 | Chromosomes | Download link |
Anolis carolinensis | NCBI | March 2007 | Traces | Download link | |
Taeniopygia guttata | NCBI | March 2007 | Traces | Download link | |
Gallus gallus | UCSC | galGal3 | May 2006 | Chromosomes | Download link |
Xenopus tropicalis | UCSC | xenTro2 | August 2005 | Scaffolds | Download link |
Tetraodon nigroviridis | UCSC | tetNig1 | February 2004 | Chromosomes | Download link |
Fugu rubripes | JGI | v4.0 | October 2004 | Scaffolds | Download link |
Gasterostreus aculeatus | UCSC | gasAcu1 | February 2006 | Chromosomes | Download link |
Oryzias latipes | Ensembl | 46 | September 2007 | Chromosomes | Download link |
Danio rerio | Ensembl | 47 | October 2007 | Chromosomes | Download link |
Petromyzon marinus | Ensembl | November 2007 | Traces | Download link | |
Branchiostoma floridae | JGI | 1.0 | December 2006 | Scaffolds | Download link |
Oikopleura dioica | NCBI | July 2004 | Traces | Download link | |
Ciona intestinalis | JGI | 2.0 | July 2005 | Scaffolds | Download link |
Ciona savignyi | Broad Inst. | April 2003 | Scaffolds | Download link | |
Saccoglossus kowalevskii | Ensembl | October 2007 | Traces | Download link | |
Strongylocentrotus purpuratus | HGSC | Spur2.1 | September 2006 | Scaffolds | Download link |
Drosophila yakuba | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila willistoni | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila virilis | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila simulans | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila pseudoobscura | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila persimilis | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila mojavensis | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila erecta | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila ananassae | CAF1 | October 2006 | Chromosomes | Download link | |
Drosophila melanogaster | CAF1 | October 2006 | Chromosomes | Download link | |
Anopheles gambiae | UCSC | MOZ2 | February 2003 | Chromosomes | Download link |
Tribolium castaneum | HGSC | 1.0 | January 2005 | Traces | Download link |
Bombyx mori | BGI | October 2003 | Scaffolds | Download link | |
Apis mellifera | HGSC | 2.0 | January 2005 | Scaffolds | Download link |
Acyrthosiphum pisum | Ensembl | February 2007 | Traces | Download link | |
Ixodes scapularis | Ensembl | February 2007 | Traces | Download link | |
Nasonia vitripennis | HGSC | 0.5 | July 2006 | Contigs | Download link |
Pediculus humanus | Ensembl | November 2007 | Traces | Download link | |
Daphnia pulex | Ensembl | June 2007 | Traces | Download link | |
Caenorhabditis briggsae | Wustl | 1.0 | January 2007 | Chromosomes | Download link |
Caenorhabditis elegans | Wormbase | WS183 | November 2007 | Chromosomes | Download link |
Caenorhabditis brenneri | Wustl | 4.0 | January 2007 | Contigs | Download link |
Caenorhabditis japonica | Ensembl | April 2007 | Traces | Download link | |
Caenorhabditis remanei | Wustl | 15.0.1 | July 2007 | Contigs | Download link |
Pristionchus pacificus | Ensembl | June 2007 | Traces | Download link | |
Trichinella spiralis | Ensembl | June 2007 | Traces | Download link | |
Brugia malayi | Ensembl | November 2006 | Traces | Download link | |
Heterorhabditis bacteriophora | Ensembl | August 2007 | Traces | Download link | |
Helobdella robusta | JGI | 1.0 | April 2007 | Scaffolds | Download link |
Capitella capitata | JGI | 1.0 | August 2007 | Scaffolds | Download link |
Aplysia californica | Ensembl | October 2007 | Traces | Download link | |
Euprymna scolopes | Ensembl | November 2007 | Traces | Download link | |
Porites lobata | Ensembl | June 2007 | Traces | Download link | |
Biomphalaria glabrata | Ensembl | July 2007 | Traces | Download link | |
Lottia gigantea | Ensembl | June 2007 | Traces | Download link | |
Spisula solidissima | Ensembl | October 2006 | Traces | Download link | |
Cerebratulus lacteus | Ensembl | October 2006 | Traces | Download link | |
Schmidtea mediterannea | Wustl | 3.1 | October 2006 | Contigs | Download link |
Schistosoma mansoni | Sanger | 3.1 | August 2006 | Scaffolds | Download link |
Acropora palmata | Ensemble | June 2007 | Traces | Download link | |
Acropora millepora | Ensemble | June 2007 | Traces | Download link | |
Hydra magnipapillata | Ensemble | November 2007 | Traces | Download link | |
Nematostella vectensis | JGI | 1.0 | May 2007 | Scaffolds | Download link |
Trichoplax adhaerens | JGI | 1.0 | December 1007 | Scaffolds | Download link |
Reniera spec. | Ensemble | May 2007 | Traces | Download link | |
Monosiga brevicollis | JGI | 1.0 | June 2007 | Scaffolds | Download link |
Group | U1 | U2 | U4 | U5 | U6 | U11 | U12 | U4atac | U6atac |
Tetrapoda | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
Teleosts | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
Basal Deuterostomes | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
Crustaceas, Insects | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
Nematods, Annelids | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
Outside | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
ALL | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
Clade | U1 | U2 | U4 | U5 | U6 | |||||
Annelids | - | (*.aln) (*.nxs) | - | (*.aln) (*.nxs) | - | (*.aln) | - | (*.aln) (*.nxs) (*.eps) | = | (*.aln) |
Nematods | - | - | - | - | = | |||||
Caenorhabditis | - | - | - | PG | = | |||||
Insects | - | (*.aln) (*.nxs) (*.eps) | - | (*.aln) (*.nxs) | - | (*.aln) (*.nxs) (*.eps) | - | (*.aln) (*.nxs) (*.eps) | = | (*.aln) |
Drosophilids | PG? | - | PG | PG | = | |||||
Basal Deuterostomes | - | (*.aln) | - | (*.aln) | - | (*.aln) | - | (*.aln) | - | (*.aln) |
Teleosts | - | (*.aln) | PG | (*.aln) (*.nxs) (*.eps) | PG | (*.aln) (*.nxs) (*.eps) | PG | (*.aln) (*.nxs) (*.eps) | - | (*.aln) |
Tetrapoda | - | (*.aln) | - | (*.aln) | - | (*.aln) | - | (*.aln) (*.nxs) (*.eps) | - | (*.aln) (*.nxs) |
Mammalia | - | - | - | PG | - |