For any question please contact manja@bioinf.uni-leipzig.de
| Organism | Source | Version | Release | Kind | Download |
| Homo sapiens | NCBI 36 | 2 | September 2006 | Chromosomes | Download link |
| Pan troglodytes | UCSC | panTro1 | November 2004 | Chromosomes | Download link |
| Bos taurus | Ensembl | 3.1 | July 2007 | Chromosomes | Download link |
| Canis familiaris | Ensembl | CanFam 2.0 | July 2007 | Chromosomes | Download link |
| Rattus norvegicus | UCSC | rn3 | June 2003 | Chromosomes | Download link |
| Mus musculus | UCSC | mm3,Build 33 | May 2004 | Chromosomes | Download link |
| Monodelphis doemstica | Ensembl | monDom5 | July 2007 | Chromosomes | Download link |
| Ornithorhynchus anatinus | Ensembl | 5.0 | July 2007 | Chromosomes | Download link |
| Anolis carolinensis | NCBI | March 2007 | Traces | Download link | |
| Taeniopygia guttata | NCBI | March 2007 | Traces | Download link | |
| Gallus gallus | UCSC | galGal3 | May 2006 | Chromosomes | Download link |
| Xenopus tropicalis | UCSC | xenTro2 | August 2005 | Scaffolds | Download link |
| Tetraodon nigroviridis | UCSC | tetNig1 | February 2004 | Chromosomes | Download link |
| Fugu rubripes | JGI | v4.0 | October 2004 | Scaffolds | Download link |
| Gasterostreus aculeatus | UCSC | gasAcu1 | February 2006 | Chromosomes | Download link |
| Oryzias latipes | Ensembl | 46 | September 2007 | Chromosomes | Download link |
| Danio rerio | Ensembl | 47 | October 2007 | Chromosomes | Download link |
| Petromyzon marinus | Ensembl | November 2007 | Traces | Download link | |
| Branchiostoma floridae | JGI | 1.0 | December 2006 | Scaffolds | Download link |
| Oikopleura dioica | NCBI | July 2004 | Traces | Download link | |
| Ciona intestinalis | JGI | 2.0 | July 2005 | Scaffolds | Download link |
| Ciona savignyi | Broad Inst. | April 2003 | Scaffolds | Download link | |
| Saccoglossus kowalevskii | Ensembl | October 2007 | Traces | Download link | |
| Strongylocentrotus purpuratus | HGSC | Spur2.1 | September 2006 | Scaffolds | Download link |
| Drosophila yakuba | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila willistoni | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila virilis | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila simulans | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila pseudoobscura | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila persimilis | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila mojavensis | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila erecta | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila ananassae | CAF1 | October 2006 | Chromosomes | Download link | |
| Drosophila melanogaster | CAF1 | October 2006 | Chromosomes | Download link | |
| Anopheles gambiae | UCSC | MOZ2 | February 2003 | Chromosomes | Download link |
| Tribolium castaneum | HGSC | 1.0 | January 2005 | Traces | Download link |
| Bombyx mori | BGI | October 2003 | Scaffolds | Download link | |
| Apis mellifera | HGSC | 2.0 | January 2005 | Scaffolds | Download link |
| Acyrthosiphum pisum | Ensembl | February 2007 | Traces | Download link | |
| Ixodes scapularis | Ensembl | February 2007 | Traces | Download link | |
| Nasonia vitripennis | HGSC | 0.5 | July 2006 | Contigs | Download link |
| Pediculus humanus | Ensembl | November 2007 | Traces | Download link | |
| Daphnia pulex | Ensembl | June 2007 | Traces | Download link | |
| Caenorhabditis briggsae | Wustl | 1.0 | January 2007 | Chromosomes | Download link |
| Caenorhabditis elegans | Wormbase | WS183 | November 2007 | Chromosomes | Download link |
| Caenorhabditis brenneri | Wustl | 4.0 | January 2007 | Contigs | Download link |
| Caenorhabditis japonica | Ensembl | April 2007 | Traces | Download link | |
| Caenorhabditis remanei | Wustl | 15.0.1 | July 2007 | Contigs | Download link |
| Pristionchus pacificus | Ensembl | June 2007 | Traces | Download link | |
| Trichinella spiralis | Ensembl | June 2007 | Traces | Download link | |
| Brugia malayi | Ensembl | November 2006 | Traces | Download link | |
| Heterorhabditis bacteriophora | Ensembl | August 2007 | Traces | Download link | |
| Helobdella robusta | JGI | 1.0 | April 2007 | Scaffolds | Download link |
| Capitella capitata | JGI | 1.0 | August 2007 | Scaffolds | Download link |
| Aplysia californica | Ensembl | October 2007 | Traces | Download link | |
| Euprymna scolopes | Ensembl | November 2007 | Traces | Download link | |
| Porites lobata | Ensembl | June 2007 | Traces | Download link | |
| Biomphalaria glabrata | Ensembl | July 2007 | Traces | Download link | |
| Lottia gigantea | Ensembl | June 2007 | Traces | Download link | |
| Spisula solidissima | Ensembl | October 2006 | Traces | Download link | |
| Cerebratulus lacteus | Ensembl | October 2006 | Traces | Download link | |
| Schmidtea mediterannea | Wustl | 3.1 | October 2006 | Contigs | Download link |
| Schistosoma mansoni | Sanger | 3.1 | August 2006 | Scaffolds | Download link |
| Acropora palmata | Ensemble | June 2007 | Traces | Download link | |
| Acropora millepora | Ensemble | June 2007 | Traces | Download link | |
| Hydra magnipapillata | Ensemble | November 2007 | Traces | Download link | |
| Nematostella vectensis | JGI | 1.0 | May 2007 | Scaffolds | Download link |
| Trichoplax adhaerens | JGI | 1.0 | December 1007 | Scaffolds | Download link |
| Reniera spec. | Ensemble | May 2007 | Traces | Download link | |
| Monosiga brevicollis | JGI | 1.0 | June 2007 | Scaffolds | Download link |
| Group | U1 | U2 | U4 | U5 | U6 | U11 | U12 | U4atac | U6atac |
| Tetrapoda | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| Teleosts | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| Basal Deuterostomes | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| Crustaceas, Insects | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| Nematods, Annelids | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| Outside | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| ALL | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) | (*.stk) |
| Clade | U1 | U2 | U4 | U5 | U6 | |||||
| Annelids | - | (*.aln) (*.nxs) | - | (*.aln) (*.nxs) | - | (*.aln) | - | (*.aln) (*.nxs) (*.eps) | = | (*.aln) |
| Nematods | - | - | - | - | = | |||||
| Caenorhabditis | - | - | - | PG | = | |||||
| Insects | - | (*.aln) (*.nxs) (*.eps) | - | (*.aln) (*.nxs) | - | (*.aln) (*.nxs) (*.eps) | - | (*.aln) (*.nxs) (*.eps) | = | (*.aln) |
| Drosophilids | PG? | - | PG | PG | = | |||||
| Basal Deuterostomes | - | (*.aln) | - | (*.aln) | - | (*.aln) | - | (*.aln) | - | (*.aln) |
| Teleosts | - | (*.aln) | PG | (*.aln) (*.nxs) (*.eps) | PG | (*.aln) (*.nxs) (*.eps) | PG | (*.aln) (*.nxs) (*.eps) | - | (*.aln) |
| Tetrapoda | - | (*.aln) | - | (*.aln) | - | (*.aln) | - | (*.aln) (*.nxs) (*.eps) | - | (*.aln) (*.nxs) |
| Mammalia | - | - | - | PG | - | |||||