Locus 99

Sequence ID pao.3206
Location 6,051,311 – 6,051,424
Length 113
Max. P 0.957159
window497

overview

Window 7

Location 6,051,311 – 6,051,424
Length 113
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 73.83
Mean single sequence MFE -34.46
Consensus MFE -17.58
Energy contribution -18.98
Covariance contribution 1.40
Combinations/Pair 1.26
Mean z-score -2.11
Structure conservation index 0.51
SVM decision value 1.47
SVM RNA-class probability 0.957159
Prediction RNA

Download alignment: ClustalW | MAF

>pao.3206 6051311 113 + 6264404
UGCUAUCUCCU----CUCGUCGAUGGGUGCGUGCGGGCACCGACCGACGUCAUUGGUGGCCAGUCUAUUUUGUUUUUAUUGAACGUUCAAUCAACUAAGAAUAAGCUCGGCGUCCAU
.((((((....----..(((((.(.(((((......))))).).))))).....))))))..(((...((((((((((((((........)))).))))))))))...)))...... ( -34.50)
>pel.188 391916 108 + 5888780
--CUAUCUCCUCAGGCCUGCGGGCAGACG---ACGAGCGGCUGCCUC----GGCGAAGGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAAUAAAGAAUAAGCUCUGCGACAAU
--...........(((((.(((((((.((---.....)).))))).)----)....))))).(((((((((...((((((((....))))))))...)))))).((...)))))... ( -35.20)
>pau.3345 6324232 111 + 6537648
--CUAUCUCCU----CUCGUCGAUAGGUGCGUGCGGGCACCGACCGACGUCAUUGGUGGCCAGUCUAUUUUGUUUUUAUUGAACGUUCAAUCAACUAAGAAUAAGCUCGGCGUCCAU
--.........----..(((((...(((((......)))))...)))))....(((..(((((..((((((......(((((....)))))......))))))..)).)))..))). ( -32.70)
>pf5.3483 506800 106 - 7074893
----CUCUCCUUAGGCCUGUCGAUUGGCG---UAUGACGCCCGUCGA----CUUGUGGGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAACAAAGAAUAAGAUCUGCGACAAA
----.........(((((((((((.((((---.....)))).)))))----)....))))).(((.((((((((((((((((....))))))).....)))))))))....)))... ( -36.70)
>pfo.3097 538728 106 - 6438405
----AUCUCCUUAGGCCUUCCGACGGACG---ACAAACGCCGAUCGG----AUUGAGGGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAACAAAGAAUAAGAUCUGCGACAAA
----.........(((((((((((((.((---.....))))).))))----)....))))).(((.((((((((((((((((....))))))).....)))))))))....)))... ( -33.20)
>consensus
__CUAUCUCCU_AGGCCUGUCGAUAGGCG___ACGGGCGCCGACCGA____AUUGAGGGCCAGUCUAUUUUGUUUUGAUUGAACGUUCAAUCAACAAAGAAUAAGCUCUGCGACAAU
.............(((((.(((((.((((........)))).))))).........)))))(((.((((((...((((((((....))))))))...)))))).))).......... (-17.58 = -18.98 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:19 2007