Locus 98

Sequence ID pao.3272
Location 6,181,646 – 6,181,744
Length 98
Max. P 0.982404
window496

overview

Window 6

Location 6,181,646 – 6,181,744
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 63.56
Mean single sequence MFE -29.34
Consensus MFE -16.00
Energy contribution -15.70
Covariance contribution -0.30
Combinations/Pair 1.33
Mean z-score -2.20
Structure conservation index 0.55
SVM decision value 1.91
SVM RNA-class probability 0.982404
Prediction RNA

Download alignment: ClustalW | MAF

>pao.3272 6181646 98 - 6264404
UCGCUGCGUAGCACGGCAAAAAAGAUGUAUGAAAAAGGGUGGCCUCGGCUGCCCUUUUUUGCGUCCGCCAUCGCUACAAUGCUGGAACCCGUGACCGC
.....(((...(((((.......(((((..(((((((((..((....))..))))))))))))))..(((..((......)))))...)))))..))) ( -37.70)
>pau.3411 6454557 98 - 6537648
UCGCUGCGUAGCACGGCAAAAAAGAUGUAUGAAAAAGGGUGGCCUCGGCUGCCCUUUUUUGCGUCCGCCAUCGCUACAAUGCUGGAACCCGUGACCGC
.....(((...(((((.......(((((..(((((((((..((....))..))))))))))))))..(((..((......)))))...)))))..))) ( -37.70)
>pfo.28 58833 75 - 6438405
---------------------AGGAAGUAUAAAAA-GGGUGGCUUUGGCCGCCCUUUUUUGUGGCCGCUGCCGUUACACUAC-AGAACUCAUGCCCGC
---------------------.((..(((((((((-(((((((....))))))))))))...(((....)))..........-.......)))))).. ( -25.40)
>pf5.53 6990993 73 + 7074893
---------------------UGCAAGCAUAAA---GGGUGGCUCAGGCCGCCCUUUUUUAUGGCGUCUGCCGCUACACUAG-CGAACUCAAGCCCGC
---------------------.....((..(((---(((((((....)))))))))).....(((......(((((...)))-)).......))).)) ( -26.42)
>pel.48 5812128 75 + 5888780
---------------------GCUAAAGAUGAAAA-GGGCAGCCUAGGCUGCCCUUUUUUCUAUCCGUAGCCGUUACACUAC-AGAACUCGAGCCCUU
---------------------(((..(((.(((((-(((((((....))))))))))))))).((.((((........))))-.)).....))).... ( -28.80)
>ppk.76 6049346 73 + 6181863
---------------------GUCAAUGAUGAAA--GGGCGGCC-GGGCUGCCCUUUUUUCCGUCCGCAGCCGUUACACUAC-AGAACUCGAGCCCUU
---------------------...........((--((((...(-(((((((..............))))))((......))-......)).)))))) ( -20.04)
>consensus
_____________________AAGAAGUAUGAAAA_GGGUGGCCUAGGCUGCCCUUUUUUGCGUCCGCAGCCGCUACACUAC_AGAACUCGAGCCCGC
..............................(((((.(((((((....))))))).)))))...................................... (-16.00 = -15.70 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:18 2007