Locus 97

Sequence ID pao.2673
Location 5,061,366 – 5,061,476
Length 110
Max. P 0.554074
window495

overview

Window 5

Location 5,061,366 – 5,061,476
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 44.81
Mean single sequence MFE -34.59
Consensus MFE -8.31
Energy contribution -11.87
Covariance contribution 3.56
Combinations/Pair 1.19
Mean z-score -1.36
Structure conservation index 0.24
SVM decision value 0.04
SVM RNA-class probability 0.554074
Prediction RNA
WARNING Mean pairwise identity too low.

Download alignment: ClustalW | MAF

>pao.2673 5061366 110 + 6264404
CCAAGGCAUGUCGCCGAGUAUCACCUGCCUGCCGGCAGCCACCGCCUGUUCAUCCUGGUAGGUCGCGCGCGUGUCCCGCGCGACGACCUGG----------CCGCUUGAGCAGCGGACGU
....(((.(((((.((.(((.....))).)).)))))))).((((.((((((...((((((((((((((((.....)))))).)))))).)----------)))..)))))))))).... ( -55.00)
>pau.2759 5225072 110 + 6537648
CCAAGGCAUGUCGCCGAGUAUCACCUGCCUGCCGGCAGCCACCGCCUGUUCAUCCUGGUAGGUCGCGCGCGUGUCCCGCGCGACGACCUGG----------CCGCUUGAGCAGCGGACGU
....(((.(((((.((.(((.....))).)).)))))))).((((.((((((...((((((((((((((((.....)))))).)))))).)----------)))..)))))))))).... ( -55.00)
>pel.550 1088218 56 + 5888780
CCAAGGCAUGUCGCCGAA------------------AGCAA----------------AAAGGUCA---------ACCGUGCCAGGGUAGGG----------CGGCG-----------GGU
.....((.(((((((...------------------.....----------------...((...---------.)).(((....))).))----------)))))-----------.)) ( -15.70)
>pfo.450 945941 57 + 6438405
CCAAGGCAUGUCGCCGAA------------------AGCAA----------------AAAGGCC------------------AUGGGAAAUGUAGUCUUUCUUUCC-----------CUU
....(((.......(...------------------.)...----------------....)))------------------..((((((.(........))))))-----------).. ( -12.64)
>consensus
CCAAGGCAUGUCGCCGAA__________________AGCAA________________AAAGGUCG_________CCCGCGCGACGACAUGG__________CCGCU___________CGU
....(((.....)))...........................................(((((((((((((.....)))))).))))))).............................. ( -8.31 = -11.87 +   3.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:17 2007