Locus 95

Sequence ID	pao.2699
Location	5,116,669 – 5,116,792
Length	123
Max. P	0.711372

overview

Window 9

Location	5,116,669 – 5,116,789
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	81.83
Mean single sequence MFE	-47.52
Consensus MFE	-33.20
Energy contribution	-34.73
Covariance contribution	1.53
Combinations/Pair	1.26
Mean z-score	-1.78
Structure conservation index	0.70
SVM decision value	0.38
SVM RNA-class probability	0.711372
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.2699 5116669 120 + 6264404
GAAUCGGCCGGCAUGGCUGCAUGGGGUCGGAUCGGACGCCCGUGCAAUUGCGUAAGGCAGGGUAUGCCAAGGAAGUUCAGGGCCCGCGAUUGUACGGAAAGGUCCAGGCCGAGGCAAGUG
(..((((((((((((.((((((((((((......))).)))))))).((((.....))))).))))))...........(((((..((......))....))))).))))))..)..... ( -52.80)
>pss.422 5288959 118 - 6093698
GUAUCGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CGUCUGC-AUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUUAGGGUGCGCGAUUGUACGCAAGGCAUUCGCGUGUUGCAAGAG
...((((((..(..(((.((((.((((((...)))))-)..((((-....(....))))))))).)))...)..))))..((..(((((.(((.(....)))).)))))..))....)). ( -43.60)
>pel.425 5030190 118 - 5888780
GUAUUGGCUGGCAUGGCUGCACAAGGCUGGAAAGGCC-CG-GCGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUUAGGGUGCGCGAUUGUACGCAACCCUAUAAAUGCUUGCAAGUG
......((.((((((((.((((....((....))(((-..-((((....))))..)))..)))).))).........((((((..(((......))).))))))...))))).))..... ( -46.00)
>pf5.3231 6095813 118 + 7074893
GUAUUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CAAGUGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAGUUCAGGGUGCGCGAUUGUACGCAAGGCUCAAUGGCCUUGCAA-GU
.....(((((...(((((......)))))...)))))-...((((((((((((..(((....)))((((.((....)).))))))))))))))))((((((((....))))))))..-.. ( -51.70)
>pfo.2881 5479989 119 + 6438405
GUAUUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CAAGUGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAGUUCAGGGUGCGCGAUUGUACGCAAGCCUUCGAAGUCAUGCAAGGG
((((.((((.....((((((...((((((...)))))-)..((((((((((((..(((....)))((((.((....)).)))))))))))))))))).)))).....))))))))..... ( -52.00)
>pst.483 5533881 118 - 6397126
GUAUUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CGUUUGC-AUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUUAGGGUGCGCGAUUGUACGCAAGGGAUUGGUGUGUUGCAAGAG
......((.((((((.(((((..((((((...)))))-)...)))-)(((((((......((((.((((..........)))))))).....)))))))......).))))))))..... ( -39.00)
>consensus
GUAUUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC_CGAGUGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUCAGGGUGCGCGAUUGUACGCAAGGCUUUAGAGUCUUGCAAGAG
.....(((((...(((((......)))))...)))))....((((((((((((..(((....)))((((.((....)).))))))))))))))))((((.(((....))).))))..... (-33.20 = -34.73 +   1.53)

alignment

secondary structure

dotplot

Window 0

Location	5,116,672 – 5,116,792
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	81.28
Mean single sequence MFE	-48.17
Consensus MFE	-33.20
Energy contribution	-34.73
Covariance contribution	1.53
Combinations/Pair	1.26
Mean z-score	-1.57
Structure conservation index	0.69
SVM decision value	0.26
SVM RNA-class probability	0.659563
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.2699 5116672 120 + 6264404
UCGGCCGGCAUGGCUGCAUGGGGUCGGAUCGGACGCCCGUGCAAUUGCGUAAGGCAGGGUAUGCCAAGGAAGUUCAGGGCCCGCGAUUGUACGGAAAGGUCCAGGCCGAGGCAAGUGCCA
((((((((((((.((((((((((((......))).)))))))).((((.....))))).))))))...........(((((..((......))....))))).))))))(((....))). ( -55.70)
>pss.422 5288962 117 - 6093698
UCGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CGUCUGC-AUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUUAGGGUGCGCGAUUGUACGCAAGGCAUUCGCGUGUUGCAAGAGGC-
...(((......((.(((((((((((...)))))-)(..(((-.(((((((......((((.((((..........)))))))).....))))))).)))..).))))).))....)))- ( -43.80)
>pel.425 5030193 117 - 5888780
UUGGCUGGCAUGGCUGCACAAGGCUGGAAAGGCC-CG-GCGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUUAGGGUGCGCGAUUGUACGCAACCCUAUAAAUGCUUGCAAGUGCC-
......((((((((.((((....((....))(((-..-((((....))))..)))..)))).)))((((.....((((((..(((......))).))))))......))))...)))))- ( -46.70)
>pf5.3231 6095816 117 + 7074893
UUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CAAGUGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAGUUCAGGGUGCGCGAUUGUACGCAAGGCUCAAUGGCCUUGCAA-GUGC-
..((((.....))))((((.((((((...)))))-)..((((((((((((..(((....)))((((.((....)).))))))))))))))))((((((((....))))))))..-))))- ( -54.00)
>pfo.2881 5479992 118 + 6438405
UUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CAAGUGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAGUUCAGGGUGCGCGAUUGUACGCAAGCCUUCGAAGUCAUGCAAGGGGC-
.(((((.....((((((...((((((...)))))-)..((((((((((((..(((....)))((((.((....)).)))))))))))))))))).)))).....)))))..........- ( -49.80)
>pst.483 5533884 117 - 6397126
UUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC-CGUUUGC-AUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUUAGGGUGCGCGAUUGUACGCAAGGGAUUGGUGUGUUGCAAGAGGC-
...((.((((((.(((((..((((((...)))))-)...)))-)(((((((......((((.((((..........)))))))).....)))))))......).)))))))).......- ( -39.00)
>consensus
UUGGCUGGCAUGGCUGCAUGGGGCUGGAACGGCC_CGAGUGCAAUUGCGUAAGGCAGGUGCUGCCCAGGAAAGUCAGGGUGCGCGAUUGUACGCAAGGCUUUAGAGUCUUGCAAGAGGC_
..(((((...(((((......)))))...)))))....((((((((((((..(((....)))((((.((....)).))))))))))))))))((((.(((....))).))))........ (-33.20 = -34.73 +   1.53)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:11 2007