| Sequence ID | pao.2754 |
|---|---|
| Location | 5,207,864 – 5,207,961 |
| Length | 97 |
| Max. P | 0.572406 |
| Location | 5,207,864 – 5,207,961 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.24 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -20.73 |
| Energy contribution | -22.12 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2754 5207864 97 + 6264404 UUUCACCGUUAUAAUCGCCCCCCGAUUAUAAGGACGCCUCCUGAUCGGGUUCCGGC-------------CCCCGCGCCAUCCCC----------CCACAGAGAGCCGCCAGUAGAGCGCU .(((....(((((((((.....)))))))))((.((.((((((...(((....(((-------------......)))....))----------)..))).))).))))....))).... ( -26.70) >pss.570 4983152 114 - 6093698 UUUCAUCGCUAUAAUCUCCCCCCGAUUAUAAGGACGUCUCCUGAUCGGGCCUCGCAGCACUGCUAAU--CGCCGUAUUAGCGCCUUCGUAAUGCCCACAGAGAGCCGCCCACACAG---- .........(((((((.......))))))).((.((.((((((...((((..((.((...(((((((--......))))))).)).))....)))).))).))).)).))......---- ( -28.80) >pfo.2810 5330034 114 + 6438405 UUUCUUCGAUACAAUCUCCCCCCGAUUAUAAGGACGUCUCCUGAUCGGGCCCCGCAACAGCGUCAAUGCGCUUGCAUUGGCAUC-CAA-AUCGCCCACAGAGAGCCGCCCACACAG---- ............((((.......))))....((.((.((((((...((((...((....))((((((((....))))))))...-...-...)))).))).))).)).))......---- ( -31.60) >pf5.3129 5896824 115 + 7074893 UUUCUUCGUUACAAUCUCCCCCCGAUUAUAAGGACGUCUCCUGAUCGGGCCUCGCAGUACCGCCAACGCCACUGCUUUGGCACC-CCGCACCGCCCACAGAGAGCCGCCCACACAG---- ........(((.((((.......)))).)))((.((.((((((...((((...((.(....(((((.((....)).)))))...-).))...)))).))).))).)).))......---- ( -28.70) >pst.661 5147160 114 - 6397126 UUUCAUCGCUAUAAUCUUCCCCCGAUUAUAAGGACGUCUCCUGAUCGGGCCUCGCAGCAUCGCUAAU--CGCCGUAUUAGCUCCUUCGUACUGCCCACAGAGAGCCGCCCACACAG---- .........(((((((.......))))))).((.((.((((((...((((..((.((....((((((--......))))))..)).))....)))).))).))).)).))......---- ( -27.80) >psp.589 4712034 114 - 5928787 UUUCAUCGCUAUAAUCUCCCCCCGAUUAUAAGGACGUCUCCUGAUCGGGCCUCGCAGCAUUGCUAAU--CGCCGUAUUAGCGCCUUCGUACUGCCCACAGAGAGCCGCCCACACAG---- .........(((((((.......))))))).((.((.((((((...((((..((.((...(((((((--......))))))).)).))....)))).))).))).)).))......---- ( -28.80) >consensus UUUCAUCGCUAUAAUCUCCCCCCGAUUAUAAGGACGUCUCCUGAUCGGGCCUCGCAGCACCGCUAAU__CGCCGCAUUAGCACC_UCGUACUGCCCACAGAGAGCCGCCCACACAG____ .........(((((((.......))))))).((.((.((((((...((((...........((((((........))))))...........)))).))).))).))))........... (-20.73 = -22.12 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:04 2007