| Sequence ID | pao.2766 |
|---|---|
| Location | 5,238,259 – 5,238,359 |
| Length | 100 |
| Max. P | 0.870279 |
| Location | 5,238,259 – 5,238,359 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 89.42 |
| Mean single sequence MFE | -35.45 |
| Consensus MFE | -34.50 |
| Energy contribution | -34.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2766 5238259 100 + 6264404 GCAUUCG-AGCAAU--ACC-ACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUU-CCU ((.....-.))...--...-.((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))).......-... ( -35.70) >pau.2904 5510202 100 + 6537648 GCAUUCG-AGCAAU--ACC-ACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUU-CCU ((.....-.))...--...-.((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))).......-... ( -35.70) >pel.1959 2218013 101 - 5888780 GCGCUUG-UCAUAUCCGAU-ACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUC--UU .....((-((......)))-)((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))).......--.. ( -35.60) >pf5.3140 5924302 102 + 7074893 GCAUUCG-AAGCAACAGAU-ACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUUC-CU ((.....-..)).......-.((((((((..(((....)))...((((((((.......)))))..)))(((((.......)))))))))))))........-.. ( -35.20) >pfo.2821 5356896 103 + 6438405 GCACUUGCAAGCAACAGAU-ACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUUC-CU ((....))...........-.((((((((..(((....)))...((((((((.......)))))..)))(((((.......)))))))))))))........-.. ( -35.80) >pst.646 5177535 102 - 6397126 ACACUCG-AUUGAUUCAAUUACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUU--CU ......(-((((...))))).((((((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))).......--.. ( -34.70) >consensus GCACUCG_AACAAUC_AAU_ACAGGGGCGUCGCCAAGCGGUAAGGCAGCAGGUUUUGAUCCUGCCAUGCGUUGGUUCGAAUCCAGCCGCCCCUGCCAUUUU__CU .....................((((((((..(((....)))...((((((((.......)))))..)))(((((.......)))))))))))))........... (-34.50 = -34.50 + 0.00)
| Location | 5,238,259 – 5,238,359 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 89.42 |
| Mean single sequence MFE | -36.32 |
| Consensus MFE | -34.22 |
| Energy contribution | -34.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2766 5238259 100 - 6264404 AGG-AAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGU-GGU--AUUGCU-CGAAUGC ((.-((.((.((((((((((((((.......)))..))..((((((.......))))))(((.........)))..)))))))))-.))--.)).))-....... ( -37.90) >pau.2904 5510202 100 - 6537648 AGG-AAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGU-GGU--AUUGCU-CGAAUGC ((.-((.((.((((((((((((((.......)))..))..((((((.......))))))(((.........)))..)))))))))-.))--.)).))-....... ( -37.90) >pel.1959 2218013 101 + 5888780 AA--GAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGU-AUCGGAUAUGA-CAAGCGC ..--((....((((((((((((((.......)))..))..((((((.......))))))(((.........)))..)))))))))-.))........-....... ( -34.90) >pf5.3140 5924302 102 - 7074893 AG-GAAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGU-AUCUGUUGCUU-CGAAUGC ((-.((....((((((((((((((.......)))..))..((((((.......))))))(((.........)))..)))))))))-.....)).)).-....... ( -35.70) >pfo.2821 5356896 103 - 6438405 AG-GAAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGU-AUCUGUUGCUUGCAAGUGC ((-.((....((((((((((((((.......)))..))..((((((.......))))))(((.........)))..)))))))))-.....)).))......... ( -35.70) >pst.646 5177535 102 + 6397126 AG--AAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGUAAUUGAAUCAAU-CGAGUGU .(--(.(((.((((((((((((((.......)))..))..((((((.......))))))(((.........)))..))))))))).)))...))...-....... ( -35.80) >consensus AG__AAAAUGGCAGGGGCGGCUGGAUUCGAACCAACGCAUGGCAGGAUCAAAACCUGCUGCCUUACCGCUUGGCGACGCCCCUGU_AUC_GAUGCCU_CGAAUGC ..........((((((((((((((.......)))..))..((((((.......))))))(((.........)))..))))))))).................... (-34.22 = -34.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:03 2007