| Sequence ID | pao.637 |
|---|---|
| Location | 1,117,625 – 1,117,774 |
| Length | 149 |
| Max. P | 0.990640 |
| Location | 1,117,625 – 1,117,707 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 76.83 |
| Mean single sequence MFE | -20.00 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.68 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.637 1117625 82 + 6264404 GUAACUUAUUGAAAAAUAACGAUAAAAAUAGUUGGUGAAAAAAUCGUCAAUCUGUCCCAUAGCCCCACUCCAUCGGGGGUUC .....((((((........))))))..(((((((..((.....))..))).)))).....((((((.(......))))))). ( -15.50) >pss.2197 1739775 82 - 6093698 UUAAGUCAAUGAAAAACAUCGUUUUUUUUAGCUGGUGAAAAAAUCGUCAGUUUGAGCGCAGGCCCCAUGCUGCUUGCGUUUG ..........(((((((...)))))))..(((((..((.....))..))))).((((((((((........)))))))))). ( -21.80) >pel.757 1458556 82 + 5888780 UUAAGUCAAUGAAAAAAAACACUAAUUUUUGCUGGUGAAAAAAUCGACAGUUUGACUGAAAGCCCCAUUUCACAGGGGUUUG ...((((((.....(((((......)))))((((.(((.....))).))))))))))..(((((((........))))))). ( -18.90) >ppk.952 1884272 82 + 6181863 UUAAGUCAAUGAAAAAAAACACUAUUUUUAGCUGGUGAAAAAAUCGUCAGUUUGACCAAAGCCCCCAUUUCACGGGGGUUUG ....(((((((((((.........))))))((((..((.....))..)))))))))..((((((((.......)))))))). ( -23.20) >pfo.931 1846874 82 + 6438405 UUAAGUCAAUGAAAAACAUCGCUUUUUUUUACUGGUGAAAAAAUCGUCAGUUUGACUGAGAGCCCCAUUCCACAAGGCUUUG ...((((((.((((((........))))))((((..((.....))..)))))))))).((((((...........)))))). ( -17.20) >pf5.2692 1948196 82 - 7074893 UUAAGUCAAUGAUAAACAUCGCUUUUUUUUACUGGUGAAAAAAUCGUCAGUUUGACUGCAAGGCCCGUCUCAUGGGGCUUUG ...((((((.(((....)))..........((((..((.....))..)))))))))).((((((((........)))))))) ( -23.40) >consensus UUAAGUCAAUGAAAAACAACGCUAUUUUUAGCUGGUGAAAAAAUCGUCAGUUUGACCGAAAGCCCCAUUCCACAGGGGUUUG ....(((((((........)).........((((..((.....))..)))))))))...(((((((........))))))). (-10.26 = -10.68 + 0.42)
| Location | 1,117,707 – 1,117,774 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 74.75 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.80 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.990640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.637 1117707 67 - 6264404 GAGCAAGCGCUUGGGA-AAUCCACAGAUCCUGUGGAUAACCCAGUGGAAAAGCCCCUAA-AAAACUGCC ((((....))))(((.-.((((((((...))))))))..)))((.((......))))..-......... ( -20.20) >pss.2197 1739857 61 + 6093698 -------UCCUCGGGACAAUCCACAGAAGCUGUGGAUAACUCAGUGGACAACCCCCCUU-UAACUUGCG -------.....(((...((((((((...))))))))........((.....)))))..-......... ( -15.00) >pel.757 1458638 68 - 5888780 GAGCAAGCGCACGGGACAAUCCACAGAAGCUGUGGAUAACUCGGUGGACAACCACUCUA-CACAGCCCG ..((....)).((((.(.((((((((...)))))))).....(((((....)))))...-....))))) ( -22.80) >ppk.952 1884354 69 - 6181863 GAGCAAGCGCUCGGGACAAUCCACAGUUCCUGUGGAUAACUCGGUGGACAACCCCCCUCUCAUACCCCU ((((....))))(((...((((((((...)))))))).....((.((......))))........))). ( -24.20) >psp.2153 1693433 61 + 5928787 -------CAGCCGGGACAAUCCACAGAAGCUGUGGAUAACUCAGUGGACAACCCCCCUU-UAACUUCCG -------....(((((..((((((((...)))))))).....((.((......)).)).-....))))) ( -15.30) >pfo.931 1846956 68 - 6438405 GAGCAAGCGCUCGGGACAAUCCACAGAAGCUGUGGAUAACUCAGUGGACAACCGUCCUC-CAGUCGCCG ((((....))))(((((.((((((((...))))))))......(.((((....)))).)-..))).)). ( -27.40) >consensus GAGCAAGCGCUCGGGACAAUCCACAGAAGCUGUGGAUAACUCAGUGGACAACCCCCCUA_CAAACUCCG .......((((.(((...((((((((...))))))))..)))))))....................... (-13.60 = -13.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:01 2007