| Sequence ID | pao.2423 |
|---|---|
| Location | 4,536,598 – 4,536,655 |
| Length | 57 |
| Max. P | 0.983234 |
| Location | 4,536,598 – 4,536,655 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 76.52 |
| Mean single sequence MFE | -17.72 |
| Consensus MFE | -13.36 |
| Energy contribution | -13.24 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2423 4536598 57 + 6264404 ACUCCUGUUU-CGUGAAAAACAGGGCUU-UUUGGAUCGAAGGGGAUCU-----UGCGGGCGCAC ...(((((((-......)))))))((((-...(((((......)))))-----...)))).... ( -16.90) >pau.535 5547770 57 - 6537648 ACUCCUGUUU-CGUGAAAAACAGGGCUU-UUUGGAUCGAAGGGGAUCU-----UGCGGGCGCAC ...(((((((-......)))))))((((-...(((((......)))))-----...)))).... ( -16.90) >pss.2125 1854327 61 - 6093698 ACUCCUGUUUAUGGAAAAAACAGGGCAU-U-UGGAUCGAAAGGGAUUCAAGC-UGCGUAGGAAA ...(((((((.......)))))))((((-(-((((((......)))))))).-)))........ ( -18.40) >pfo.2520 1611282 60 - 6438405 ACUCCUGUUUGUGUGAAAAACAGGGCGU-UAUGAAUCGAAAGGGAUUCAAGGGUACGCACG--- ...(((((((.......)))))))((((-..((((((......)))))).....))))...--- ( -18.80) >pf5.2746 1854997 64 - 7074893 ACUCCUGUUUGUGUGAAAAACAGGGCAUAUAUGAAUCGAAUGGGAUUUAAGGGUGCGCGCAGAA ...(((((((.......)))))))((((...((((((......))))))...))))........ ( -17.60) >consensus ACUCCUGUUU_UGUGAAAAACAGGGCAU_UAUGGAUCGAAAGGGAUUUAAG__UGCGCGCGCAA ...(((((((.......)))))))((.....((((((......)))))).....))........ (-13.36 = -13.24 + -0.12)
| Location | 4,536,598 – 4,536,655 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 76.52 |
| Mean single sequence MFE | -13.28 |
| Consensus MFE | -8.66 |
| Energy contribution | -8.38 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2423 4536598 57 - 6264404 GUGCGCCCGCA-----AGAUCCCCUUCGAUCCAAA-AAGCCCUGUUUUUCACG-AAACAGGAGU .(((....)))-----.((((......))))....-..((((((((((....)-))))))).)) ( -13.90) >pau.535 5547770 57 + 6537648 GUGCGCCCGCA-----AGAUCCCCUUCGAUCCAAA-AAGCCCUGUUUUUCACG-AAACAGGAGU .(((....)))-----.((((......))))....-..((((((((((....)-))))))).)) ( -13.90) >pss.2125 1854327 61 + 6093698 UUUCCUACGCA-GCUUGAAUCCCUUUCGAUCCA-A-AUGCCCUGUUUUUUCCAUAAACAGGAGU ........(((-..(((.(((......))).))-)-.)))(((((((.......)))))))... ( -13.20) >pfo.2520 1611282 60 + 6438405 ---CGUGCGUACCCUUGAAUCCCUUUCGAUUCAUA-ACGCCCUGUUUUUCACACAAACAGGAGU ---...((((.....((((((......))))))..-))))(((((((.......)))))))... ( -15.90) >pf5.2746 1854997 64 + 7074893 UUCUGCGCGCACCCUUAAAUCCCAUUCGAUUCAUAUAUGCCCUGUUUUUCACACAAACAGGAGU ........(((......((((......))))......)))(((((((.......)))))))... ( -9.50) >consensus GUGCGCCCGCA__CUUAAAUCCCCUUCGAUCCAAA_AAGCCCUGUUUUUCACA_AAACAGGAGU ........((.......((((......)))).......))(((((((.......)))))))... ( -8.66 = -8.38 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:11:52 2007