| Sequence ID | pao.573 |
|---|---|
| Location | 1,007,749 – 1,007,861 |
| Length | 112 |
| Max. P | 0.696591 |
| Location | 1,007,749 – 1,007,861 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -38.48 |
| Consensus MFE | -23.30 |
| Energy contribution | -23.75 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.573 1007749 112 + 6264404 CCAACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCAUCCCGCGUCUGUGUGGGCGCAUUCUACGGAC------UCUCGUCGGGCUGUCAAUCGAUUUUUCGAA--AAAA .....((((....))))...((((((((((((((((((((.((........))))))).))))......((....)).------.))))))))))).....((((....)))).--.... ( -46.50) >pau.2459 1893841 112 - 6537648 CCAACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCAUCCCGCGUCUGUGUGGGCGCAUUCUACGGAC------UCUCGUCGGGUUGUCAAUCGAUUUUUCGAA--AAAA .....((((....)))).((((((((((((((((((((((.((........))))))).))))......((....)).------.))))))))))..))).((((....)))).--.... ( -44.20) >pfo.671 1366009 113 + 6438405 CCGACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCAUCCCGCGUCUGUGUGGCGGCAUUCUACAGAG------GAUCGCCGGGGUGUCAACC-UUCAAUUCGGAUAAAA ((((.((((....)))).(((((((.....((((((((((.((........))))))).)))))((((((((....))------))).))).)))).)))...-......))))...... ( -44.10) >pf5.751 1424794 112 + 7074893 CCGACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCAUCCCGCGUCUGUGUGGCCGAAUUCUACAGAGCUGGCAGAUC------CUGUCAAUCAUUAAAUUUUG--AAAA ..........((((((.....))))))((.((((((((((.((........))))))).))))))).........((..((((((...------)))))).))...........--.... ( -34.20) >pel.2366 1486105 112 - 5888780 CCGACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGGCUGCUCCAUCCCGCGCCUGUGAGAUCGAAUUCUACGGAU------UUGUUUCCCUGUGUCAAGUAUUAGUUUCAA--AAAA ..((((....((((((.....))))))(((.((..(((((.((........)))))))..)).)))........(((.------.....)))...))))...............--.... ( -30.30) >ppk.685 1380978 112 + 6181863 CCGACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGGCUGCUCCAUCCCGCGCCUGUGAGAUCGAAUUCUACGGAU------UUACGCACUGAUGUCAAGCAAUUGUUUUGG--AAAA (((.......((((((.....))))))(((.((..(((((.((........)))))))..)).))).......)))..------.......(..(...(((....)))..)..)--.... ( -31.60) >consensus CCGACGACCUUCGGGUUAUGAGCCCGACGAGCUACCAGACUGCUCCAUCCCGCGUCUGUGUGGCCGAAUUCUACGGAC______UAUCGUCGGGCUGUCAAUCAAUUAUUUCAA__AAAA .....((((.((((((.....)))))).).((((((((((.((........))))))).)))))................................)))..................... (-23.30 = -23.75 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:11:45 2007