| Sequence ID | pao.561 |
|---|---|
| Location | 991,770 – 991,829 |
| Length | 59 |
| Max. P | 0.999947 |
| Location | 991,770 – 991,829 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 66.86 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -22.46 |
| Energy contribution | -20.80 |
| Covariance contribution | -1.66 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.92 |
| SVM decision value | 4.76 |
| SVM RNA-class probability | 0.999947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.561 991770 59 + 6264404 UGCCCGGGAUUUUUCUUCCGCCGGAACGCGGCCCCGUCGUCAGGCGGGGCGGGAAGGGG ...........(..(((((((......)).((((((((....)))))))).)))))..) ( -27.90) >pau.2472 1877829 57 - 6537648 UGCCCGGGAUUUUUUUUCCGCCGGAACGCGGCCCCGUCGUCAGGCGGGGCGGGAAGG-- ..(((((((......))))((......)).((((((((....)))))))))))....-- ( -27.60) >psp.60 109662 53 + 5928787 AGUCCUGAAAGUCGUUUUUGCCACAAAUUUGCCACAC--UCAAGUGUGGCGGGAA---- ..((((....((.((....)).))......(((((((--....))))))))))).---- ( -18.00) >consensus UGCCCGGGAUUUUUUUUCCGCCGGAACGCGGCCCCGUCGUCAGGCGGGGCGGGAAGG__ ..(((.(((.......)))...........((((((((....)))))))))))...... (-22.46 = -20.80 + -1.66)
| Location | 991,770 – 991,829 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 66.86 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -15.26 |
| Energy contribution | -13.93 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.79 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.561 991770 59 - 6264404 CCCCUUCCCGCCCCGCCUGACGACGGGGCCGCGUUCCGGCGGAAGAAAAAUCCCGGGCA ((((((((.((((((........)))))).((......))))))).........))).. ( -21.30) >pau.2472 1877829 57 + 6537648 --CCUUCCCGCCCCGCCUGACGACGGGGCCGCGUUCCGGCGGAAAAAAAAUCCCGGGCA --....(((((((((........)))))((((......))))...........)))).. ( -20.60) >psp.60 109662 53 - 5928787 ----UUCCCGCCACACUUGA--GUGUGGCAAAUUUGUGGCAAAAACGACUUUCAGGACU ----.(((.(((((((....--)))))))....((((.......))))......))).. ( -16.30) >consensus __CCUUCCCGCCCCGCCUGACGACGGGGCCGCGUUCCGGCGGAAAAAAAAUCCCGGGCA .........((((((........)))))).....(((((.((........))))))).. (-15.26 = -13.93 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:11:31 2007