Locus 78

Sequence ID	pao.2823
Location	5,347,096 – 5,347,197
Length	101
Max. P	0.992767

overview

Window 6

Location	5,347,096 – 5,347,197
Length	101
Sequences	6
Columns	103
Reading direction	forward
Mean pairwise identity	78.77
Mean single sequence MFE	-41.18
Consensus MFE	-23.28
Energy contribution	-23.28
Covariance contribution	0.00
Combinations/Pair	1.06
Mean z-score	-3.30
Structure conservation index	0.57
SVM decision value	2.10
SVM RNA-class probability	0.988019
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.2823 5347096 101 + 6264404
AA-UUAAGGACCCUCCAGACACGCCAACGCGGGAGCAGGCUCCCGCGUGGCGGAUCAUGCGUACCGG-CCUGGCCGGCACGCGGGGCAGAAGCAAGCCGGGGC
..-.......(((.((.((..(((((.((((((((....)))))))))))))..))..((((.((((-(...))))).))))))(((........)))))).. ( -57.10)
>pst.2674 5075633 89 + 6397126
AA-UUUUGGGUGUUCCAGACACGCCAACGCGGGAGCAAGCUCCCGCGCGGCG--ACAU-CCUACCAG-UCAG-------CGCUCGAAAGAGGUCAACCGGG--
..-....((((((........((((..((((((((....)))))))).))))--))))-))..((.(-(..(-------(.(((....)))))..)).)).-- ( -40.50)
>pss.2536 4990593 90 + 6093698
AAUUUUUGCCUGUUCCAGACACGCCAACGCGGGAGCAAGCUCCCGCGCGGCG--ACAU-CCUACCAG-UCAG-------CGCUCGAAAGAGGUCAACCGGC--
.......(((.(((...(((.((((..((((((((....)))))))).))))--....-........-....-------..(((....))))))))).)))-- ( -37.50)
>pfo.427 5541468 88 - 6438405
AA-UU-CGCGUAUUCCAGAUACGCCAACGCGGGAGCAAGCUCCCGCGCGGCG--ACAU-CCUACCAG-UCAC-------CGCCGCAAGGCAGUCAACCGGG--
..-..-.(((((((...)))))))...((((((((....)))))))).((.(--((..-.......)-)).)-------)(((....)))...........-- ( -37.30)
>pf5.495 6118358 89 - 7074893
AA-UUUCGCUGACUCCAGACACGCCAACGCGGGAGCAAGCUCCCGCGCGGCG--ACAU-CCUACCAG-UCAC-------CGCCCGAAGGCAGUCAACCGGC--
..-....((((......(((..(((...(((((((....)))))))((((.(--((..-.......)-)).)-------))).....))).)))...))))-- ( -35.70)
>pel.391 5080999 89 - 5888780
AA-UU-CUCGUGUUCCAGACACGCCAACGCGGGAGCAAGCCCCCGCGCGGCG--ACAU-CCUACCAGCUCAC-------CGCCAAACGGCGGUGAACCGGC--
..-..-...(((((...)))))(((..((((((.(....).)))))).))).--....-....((.(.((((-------((((....)))))))).).)).-- ( -39.00)
>consensus
AA_UUUCGCGUGUUCCAGACACGCCAACGCGGGAGCAAGCUCCCGCGCGGCG__ACAU_CCUACCAG_UCAC_______CGCCCGAAAGAAGUCAACCGGC__
..............((.....((((..((((((((....)))))))).)))).............................((....)).........))... (-23.28 = -23.28 +   0.00)

alignment

secondary structure

dotplot

Window 7

Location	5,347,096 – 5,347,197
Length	101
Sequences	6
Columns	103
Reading direction	reverse
Mean pairwise identity	78.77
Mean single sequence MFE	-50.40
Consensus MFE	-29.86
Energy contribution	-29.19
Covariance contribution	-0.67
Combinations/Pair	1.20
Mean z-score	-4.23
Structure conservation index	0.59
SVM decision value	2.35
SVM RNA-class probability	0.992767
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.2823 5347096 101 - 6264404
GCCCCGGCUUGCUUCUGCCCCGCGUGCCGGCCAGG-CCGGUACGCAUGAUCCGCCACGCGGGAGCCUGCUCCCGCGUUGGCGUGUCUGGAGGGUCCUUAA-UU
((((.(((........)))((((((((((((...)-)))))))))..((..(((((((((((((....)))))))).)))))..)).)).))))......-.. ( -61.10)
>pst.2674 5075633 89 - 6397126
--CCCGGUUGACCUCUUUCGAGCG-------CUGA-CUGGUAGG-AUGU--CGCCGCGCGGGAGCUUGCUCCCGCGUUGGCGUGUCUGGAACACCCAAAA-UU
--.((((((..((((....))).)-------..))-))))..((-(((.--(((((((((((((....)))))))).))))))))))((.....))....-.. ( -41.70)
>pss.2536 4990593 90 - 6093698
--GCCGGUUGACCUCUUUCGAGCG-------CUGA-CUGGUAGG-AUGU--CGCCGCGCGGGAGCUUGCUCCCGCGUUGGCGUGUCUGGAACAGGCAAAAAUU
--(((((((..((((....))).)-------..))-)))))...-....--(((((((((((((....)))))))).)))))((((((...))))))...... ( -43.60)
>pfo.427 5541468 88 + 6438405
--CCCGGUUGACUGCCUUGCGGCG-------GUGA-CUGGUAGG-AUGU--CGCCGCGCGGGAGCUUGCUCCCGCGUUGGCGUAUCUGGAAUACGCG-AA-UU
--.((((((.((((((....))))-------))))-))))..((-(((.--(((((((((((((....)))))))).))))))))))..........-..-.. ( -47.70)
>pf5.495 6118358 89 + 7074893
--GCCGGUUGACUGCCUUCGGGCG-------GUGA-CUGGUAGG-AUGU--CGCCGCGCGGGAGCUUGCUCCCGCGUUGGCGUGUCUGGAGUCAGCGAAA-UU
--(((((((.((((((....))))-------))))-))))).((-(((.--(((((((((((((....)))))))).)))))))))).............-.. ( -51.90)
>pel.391 5080999 89 + 5888780
--GCCGGUUCACCGCCGUUUGGCG-------GUGAGCUGGUAGG-AUGU--CGCCGCGCGGGGGCUUGCUCCCGCGUUGGCGUGUCUGGAACACGAG-AA-UU
--((((((((((((((....))))-------)))))))))).((-(((.--(((((((((((((....)))))))).))))))))))..........-..-.. ( -56.40)
>consensus
__CCCGGUUGACCGCCUUCGGGCG_______CUGA_CUGGUAGG_AUGU__CGCCGCGCGGGAGCUUGCUCCCGCGUUGGCGUGUCUGGAACACGCGAAA_UU
...((((...(((.........................)))..........(((((((((((((....)))))))).)))))...)))).............. (-29.86 = -29.19 +  -0.67)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:11:16 2007