| Sequence ID | pao.444 |
|---|---|
| Location | 797,720 – 797,816 |
| Length | 96 |
| Max. P | 0.984602 |
| Location | 797,720 – 797,816 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.73 |
| Mean single sequence MFE | -34.13 |
| Consensus MFE | -29.20 |
| Energy contribution | -28.48 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.444 797720 96 + 6264404 UGGAGCGGGCGAAGGGAAUCGAACCCUCGUCAUGAGCUUGGGAAGCUCAGGUAAUGCCAUUAUACGACGCCCGCUCGGACGGCUUUUGCGGCCAGG ..((((((((((.(((.......)))))(((.((((((.....))))))((.....)).......)))))))))))((.(.((....)).)))... ( -43.20) >pss.2409 1357578 95 - 6093698 UGGAGCGGGUAGAGGGAAUCGAACCCUCAACUAAAGCUUGGGAAGCUUUCGUUUUACCACUAAACUAUACCCGCUCUGAUAGCUGCU-CUGAGCGG .(((((((((((((((.......)))))(((.((((((.....)))))).)))..............)))))))))).....((((.-....)))) ( -36.30) >pel.2474 1280143 82 - 5888780 UGGAGCGGGUAGAGGGAAUCGAACCCUCAACUAAAGCUUGGGAAGCUUUCGUUUUGCCACUAAACUAUACCCGCGU--------------UUGCGC ....((((((((((((.......)))))(((.((((((.....)))))).)))..............)))))))..--------------...... ( -28.00) >ppk.800 1606456 82 + 6181863 UGGAGCGGGUAGAGGGAAUCGAACCCUCAACUAAAGCUUGGGAAGCUUUCGUUUUGCCACUAAACUAUACCCGCAU--------------CUGAGC .(((((((((((((((.......)))))(((.((((((.....)))))).)))..............))))))).)--------------)).... ( -29.30) >pfo.754 1506384 83 + 6438405 UGGAGCGGGUGAAGGGAAUCGAACCCUCGUUAUCAGCUUGGGAAGCUGGAGUAAUGCCAUUAUACGACACCCGCUC-------------AGAGCGG ..(((((((((.((((.......))))(((((((((((.....)))))..))))))...........)))))))))-------------....... ( -31.70) >psp.2323 1380779 95 - 5928787 UGGAGCGGGUAGAGGGAAUCGAACCCUCAACUAAAGCUUGGGAAGCUUUCGUUUUACCACUAAACUAUACCCGCUCUGGGAGCUGCU-CUGAGCGG .(((((((((((((((.......)))))(((.((((((.....)))))).)))..............)))))))))).....((((.-....)))) ( -36.30) >consensus UGGAGCGGGUAGAGGGAAUCGAACCCUCAACUAAAGCUUGGGAAGCUUUCGUUUUGCCACUAAACUAUACCCGCUC______________GAGCGG ..((((((((((((((.......)))))(((.((((((.....)))))).)))..............))))))))).................... (-29.20 = -28.48 + -0.72)
| Location | 797,720 – 797,816 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 74.73 |
| Mean single sequence MFE | -31.83 |
| Consensus MFE | -28.55 |
| Energy contribution | -27.72 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.444 797720 96 - 6264404 CCUGGCCGCAAAAGCCGUCCGAGCGGGCGUCGUAUAAUGGCAUUACCUGAGCUUCCCAAGCUCAUGACGAGGGUUCGAUUCCCUUCGCCCGCUCCA ...(((.((....)).))).(((((((((((((.....((.....)).(((((.....))))))))))(((((........))))))))))))).. ( -40.00) >pss.2409 1357578 95 + 6093698 CCGCUCAG-AGCAGCUAUCAGAGCGGGUAUAGUUUAGUGGUAAAACGAAAGCUUCCCAAGCUUUAGUUGAGGGUUCGAUUCCCUCUACCCGCUCCA ..(((...-...))).....(((((((((..............(((.((((((.....)))))).)))(((((.......)))))))))))))).. ( -33.20) >pel.2474 1280143 82 + 5888780 GCGCAA--------------ACGCGGGUAUAGUUUAGUGGCAAAACGAAAGCUUCCCAAGCUUUAGUUGAGGGUUCGAUUCCCUCUACCCGCUCCA ......--------------..(((((((..............(((.((((((.....)))))).)))(((((.......)))))))))))).... ( -27.50) >ppk.800 1606456 82 - 6181863 GCUCAG--------------AUGCGGGUAUAGUUUAGUGGCAAAACGAAAGCUUCCCAAGCUUUAGUUGAGGGUUCGAUUCCCUCUACCCGCUCCA .....(--------------(.(((((((..............(((.((((((.....)))))).)))(((((.......)))))))))))))).. ( -27.70) >pfo.754 1506384 83 - 6438405 CCGCUCU-------------GAGCGGGUGUCGUAUAAUGGCAUUACUCCAGCUUCCCAAGCUGAUAACGAGGGUUCGAUUCCCUUCACCCGCUCCA .......-------------(((((((((...................(((((.....))))).....(((((.......)))))))))))))).. ( -29.40) >psp.2323 1380779 95 + 5928787 CCGCUCAG-AGCAGCUCCCAGAGCGGGUAUAGUUUAGUGGUAAAACGAAAGCUUCCCAAGCUUUAGUUGAGGGUUCGAUUCCCUCUACCCGCUCCA ..(((...-...))).....(((((((((..............(((.((((((.....)))))).)))(((((.......)))))))))))))).. ( -33.20) >consensus CCGCUC______________GAGCGGGUAUAGUUUAGUGGCAAAACGAAAGCUUCCCAAGCUUUAGUUGAGGGUUCGAUUCCCUCUACCCGCUCCA ....................(((((((((..................((((((.....))))))....(((((.......)))))))))))))).. (-28.55 = -27.72 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:11:08 2007