| Sequence ID | pao.2542 |
|---|---|
| Location | 4,783,116 – 4,783,227 |
| Length | 111 |
| Max. P | 0.963649 |
| Location | 4,783,116 – 4,783,227 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.19 |
| Mean single sequence MFE | -41.25 |
| Consensus MFE | -31.98 |
| Energy contribution | -31.87 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2542 4783116 111 + 6264404 ACUCCAAAUUCGGGUACAAGCGCC--UGAAGGCUCCCCGGUUGCUUUCGCGUUUAUCCCAGUGACGACAAAACCCCGCAGCCUUGGGCUGCGGGGUGAGGGAUGCGUUUUCAG ...........(((...((((((.--.((((((.(....)..))))))))))))..))).(.((((.(...(((((((((((...)))))))))))...)....))))..).. ( -46.10) >pau.417 5793945 111 - 6537648 ACUCCAAAUUCGGGUACAAGCGCC--UGAAGGCUCCCCGGUUGCUUUCGCGUUUAUCCCAGUGACGACAAAACCCCGCAGCCUUGGGCUGCGGGGUGAGGGAUGCGUUUUCAG ...........(((...((((((.--.((((((.(....)..))))))))))))..))).(.((((.(...(((((((((((...)))))))))))...)....))))..).. ( -46.10) >pfo.2999 5721163 110 + 6438405 ACUCCAAUUACGGGUUCGAACGCCUCGAAAGGCUCCCCGGUUACUUGCGCGUUUAUCCCAGUGACGACAAAACCCCACAGCCUAGGGCUGCGGGGU-UGGGAUGCUUGCUC-- ..........((((...((..((((....)))))))))).........(((..((((((.((....))..((((((.(((((...))))).)))))-)))))))..)))..-- ( -41.50) >pf5.3375 6378103 111 + 7074893 ACUCCAAUUACGGGUUCAGACGCCUAGAUAGGCUCCCCGGUUACUUGCGCGUUUAUCCCAGUGACGACAAAACCCCACAGCCUAAGGCUGCGGGGUAUGGGAUUCUCGUUC-- ..........((((....((.((((....)))))))))).........(((...((((((((....))...(((((.(((((...))))).))))).))))))...)))..-- ( -40.70) >pst.388 5721139 111 - 6397126 ACUCCAAUUACGGGUUCAAGCGCCUAUAAAGGCUCCCCGGUUACGUACGCGUAUAUCCCAGUGACGAAAAAACCCCACAGCCUUAAGCUGCGGGGUAUGGGAUUUCAGCUC-- ..........((((.....(.((((....)))).))))).........((....((((((...........(((((.((((.....)))).))))).))))))....))..-- ( -35.90) >psp.2681 5242963 111 + 5928787 ACUCCAAUUACGGGUUCAAGCGCCAAUAAAGGCUCCCCGGUUACUUACGCGUAUAUCCCAGUGACGAAAAAACCCCACAGCCAUGGGCUGCGGGGUAUGGGAUUCCAGCUC-- ..........((((.....(.(((......))).))))).........((....((((((...........(((((.(((((...))))).))))).))))))....))..-- ( -37.20) >consensus ACUCCAAUUACGGGUUCAAGCGCCUAUAAAGGCUCCCCGGUUACUUACGCGUUUAUCCCAGUGACGACAAAACCCCACAGCCUUGGGCUGCGGGGUAUGGGAUGCCUGCUC__ ..(((......(((...((((((.......((((....))))......))))))..)))............(((((.((((.....)))).)))))...)))........... (-31.98 = -31.87 + -0.11)
| Location | 4,783,116 – 4,783,227 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 85.19 |
| Mean single sequence MFE | -43.38 |
| Consensus MFE | -40.11 |
| Energy contribution | -39.03 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.963649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2542 4783116 111 - 6264404 CUGAAAACGCAUCCCUCACCCCGCAGCCCAAGGCUGCGGGGUUUUGUCGUCACUGGGAUAAACGCGAAAGCAACCGGGGAGCCUUCA--GGCGCUUGUACCCGAAUUUGGAGU ........((.(((((.(((((((((((...)))))))))))((((((........)))))).((....))....)))))(((....--)))))......(((....)))... ( -45.20) >pau.417 5793945 111 + 6537648 CUGAAAACGCAUCCCUCACCCCGCAGCCCAAGGCUGCGGGGUUUUGUCGUCACUGGGAUAAACGCGAAAGCAACCGGGGAGCCUUCA--GGCGCUUGUACCCGAAUUUGGAGU ........((.(((((.(((((((((((...)))))))))))((((((........)))))).((....))....)))))(((....--)))))......(((....)))... ( -45.20) >pfo.2999 5721163 110 - 6438405 --GAGCAAGCAUCCCA-ACCCCGCAGCCCUAGGCUGUGGGGUUUUGUCGUCACUGGGAUAAACGCGCAAGUAACCGGGGAGCCUUUCGAGGCGUUCGAACCCGUAAUUGGAGU --((((.....(((((-(((((((((((...))))))))))))(((((........)))))..((....)).....))))((((....))))))))..(((((....))).)) ( -45.00) >pf5.3375 6378103 111 - 7074893 --GAACGAGAAUCCCAUACCCCGCAGCCUUAGGCUGUGGGGUUUUGUCGUCACUGGGAUAAACGCGCAAGUAACCGGGGAGCCUAUCUAGGCGUCUGAACCCGUAAUUGGAGU --((.(((.((......(((((((((((...))))))))))).)).)))))...(((......((....))...((((..((((....)))).))))..)))........... ( -41.50) >pst.388 5721139 111 + 6397126 --GAGCUGAAAUCCCAUACCCCGCAGCUUAAGGCUGUGGGGUUUUUUCGUCACUGGGAUAUACGCGUACGUAACCGGGGAGCCUUUAUAGGCGCUUGAACCCGUAAUUGGAGU --((((.....((((..((((((((((.....))))))))))...........(((....((((....)))).)))))))((((....))))))))..(((((....))).)) ( -41.40) >psp.2681 5242963 111 - 5928787 --GAGCUGGAAUCCCAUACCCCGCAGCCCAUGGCUGUGGGGUUUUUUCGUCACUGGGAUAUACGCGUAAGUAACCGGGGAGCCUUUAUUGGCGCUUGAACCCGUAAUUGGAGU --(((((((.((((((.(((((((((((...)))))))))))...........))))))....((....))..)))....(((......)))))))..(((((....))).)) ( -42.00) >consensus __GAACAAGAAUCCCAUACCCCGCAGCCCAAGGCUGUGGGGUUUUGUCGUCACUGGGAUAAACGCGAAAGUAACCGGGGAGCCUUUAUAGGCGCUUGAACCCGUAAUUGGAGU ...........(((...(((((((((((...)))))))))))............(((......((....))...((((..(((......))).))))..)))......))).. (-40.11 = -39.03 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:10:40 2007