| Sequence ID | pao.2545 |
|---|---|
| Location | 4,788,760 – 4,788,892 |
| Length | 132 |
| Max. P | 0.996446 |
| Location | 4,788,760 – 4,788,852 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 68.82 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.47 |
| SVM decision value | 2.70 |
| SVM RNA-class probability | 0.996446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2545 4788760 92 - 6264404 CGUGAGGCUUGACCAUAUAACACCCAAACAAUCUG---------------------ACGAUUGUGUGUUGUAAGGUGAAGUCGAC--GAACCGAAAGUUCGCAUGAACCGCAAAA .(((.(((((.(((.((((((((....((((((..---------------------..)))))))))))))).))).)))))(.(--(((.(....))))))......))).... ( -33.20) >pss.3053 5948137 100 - 6093698 CGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCGUCGAAUG------------ACCAGAUUGCGGUG-ACUGUGAAGAUGACACGAACCGAAAGUUUGCGUCACGAACGA-- (((((.((..(((..............((((((((.(((....)------------))))))))))(((.-..((((.......)))).)))....))).)).))))).....-- ( -30.90) >pel.2704 4998683 85 - 5888780 CGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGCACAUG-------------AACGCAGAUUGUGGUG----GUGAAGACGAAA-GAACCGAAAGUUCGC------------A .(((((.(((..........((((...(((((((((.....-------------...)))))))))...)----)))....(....-)......))))))))------------. ( -27.80) >ppk.338 5479046 92 + 6181863 CGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGC------------------UACGCAGAUUGCGGUG----GUGAAGACGAAA-GACCCGAAAAUUCGUGCUUUACACAAGA .(((((((.(((........((((...(((((((((------------------...)))))))))...)----)))....(....-)..........))).)))))))...... ( -32.20) >pf5.74 6947059 90 + 7074893 CGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCUUAAG--------------AAGCGAGUUGCGGUG---UGUGAAGACGAUACAAACCGAAAGUUUG-----CGAACA--- ((..((.(((.((......(((((...((((((((((....--------------.))))))))))))))---))).)))...........(....)))..-----))....--- ( -24.30) >psp.2973 5779292 111 - 5928787 CGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGAGUGGACUUCCUGACAGGAGCAUCAGAUUGCGGUG-ACUGUGAAGACGACACGAACCGAAAGUUUGCGUCACAAACG--- .((((.((..(((..............(((((((((...(.((((......))))).)))))))))(((.-..((((.......)))).)))....))).)).)))).....--- ( -31.10) >consensus CGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGC_U_________________AAGCAGAUUGCGGUG___UGUGAAGACGACA_GAACCGAAAGUUCGCGU_ACAAACA___ (....).(((.((.......((((...(((((((((.....................)))))))))))))....)).))).......((((.....))))............... (-14.04 = -14.10 + 0.06)
| Location | 4,788,795 – 4,788,892 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.86 |
| Mean single sequence MFE | -31.65 |
| Consensus MFE | -23.84 |
| Energy contribution | -23.68 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2545 4788795 97 - 6264404 UAAGCGUUGUGAGGCGUUGAGCUAACCAGUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAACAAUCUG---------------------ACGAUUGUGUGUUGUAAGGUGA (((((.(..((.((((..(.(((....))).)....))))))..).)))))(((.((((((((....((((((..---------------------..)))))))))))))).))).. ( -32.60) >pss.3053 5948172 105 - 6093698 UAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCGUCGAAUG------------ACCAGAUUGCGGUG-ACUGUGA .....(((....)))((..((((.((((((....))))...))..))))..))((((...((((...((((((((.(((....)------------))))))))))))))-..)))). ( -30.40) >pel.2704 4998707 101 - 5888780 UAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGCACAUG-------------AACGCAGAUUGUGGUG----GUGA .....(((....)))((..((((.((((((....))))...))..))))..)).......((((...(((((((((.....-------------...)))))))))...)----))). ( -32.10) >ppk.338 5479082 96 + 6181863 UAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGC------------------UACGCAGAUUGCGGUG----GUGA .....(((....)))((..((((.((((((....))))...))..))))..)).......((((...(((((((((------------------...)))))))))...)----))). ( -32.10) >pf5.74 6947088 101 + 7074893 UAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCUUAAG--------------AAGCGAGUUGCGGUG---UGUGA .....(((....)))((..((((.((((((....))))...))..))))..))(((...(((((...((((((((((....--------------.))))))))))))))---)))). ( -30.60) >psp.2973 5779326 117 - 5928787 UAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGAGUGGACUUCCUGACAGGAGCAUCAGAUUGCGGUG-ACUGUGA .....(((....)))((..((((.((((((....))))...))..))))..))((((...((((...(((((((((...(.((((......))))).)))))))))))))-..)))). ( -32.10) >consensus UAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGC_U_________________AAGCAGAUUGCGGUG___UGUGA .....(((....)))((..((((.((((((....))))...))..))))..))(((....((((...(((((((((.....................)))))))))))))....))). (-23.84 = -23.68 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:08:35 2007