Locus 54

Sequence ID pao.411
Location 726,928 – 727,025
Length 97
Max. P 0.924291
window285

overview

Window 5

Location 726,928 – 727,025
Length 97
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -35.98
Consensus MFE -22.80
Energy contribution -22.30
Covariance contribution -0.50
Combinations/Pair 1.08
Mean z-score -2.30
Structure conservation index 0.63
SVM decision value 1.16
SVM RNA-class probability 0.924291
Prediction RNA

Download alignment: ClustalW | MAF

>pao.411 726928 97 + 6264404
CUGGGUGUGUAAGCGUUGUGAGGCGUUGAGCUAACCAGUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAACAAUCUGA----------------CGAUUG-------UGUGUU
.(((((((.(((((.(..((.((((..(.(((....))).)....))))))..).)))))........))))))).((((((...----------------.)))))-------)..... ( -31.80)
>pau.2632 1585296 97 - 6537648
CUGGGUGUGUAAGCGUUGUGAGGCGUUGAGCUAACCAGUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAACAAUCUGA----------------UGAUUG-------UGUGUU
.(((((((.(((((.(..((.((((..(.(((....))).)....))))))..).)))))........))))))).((((((...----------------.)))))-------)..... ( -32.40)
>pss.496 969601 106 + 6093698
UUGGGUGUGUAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCGU--------------CGAAUGACCAGAUUGCGGU
(((((((((((...(((....)))((..((((.((((((....))))...))..))))..))..))).))))))))((((((((.((--------------(....)))))))))))... ( -37.30)
>pfo.1282 2554400 120 + 6438405
UUGGGUGUGUAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCGUGGGCUCUCUAAACCAGAGCAACCAGAUUGCGGU
(((((((((((...(((....)))((..((((.((((((....))))...))..))))..))..))).))))))))((((((((.((..(((((.......))))).))))))))))... ( -42.40)
>consensus
CUGGGUGUGUAAGCGCUGUGAGGCGUUGAGCUAACCAAUACUAAUUGCCCGUGAGGCUUGACCAUAUAACACCCAAACAAUCUGA________________CGAUUG_______UGCGGU
.((((((((((...(((....)))((..((((.((((((....))))...))..))))..))..))).)))))))............................................. (-22.80 = -22.30 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:08:24 2007