Locus 50

Sequence ID pao.411
Location 725,010 – 725,130
Length 120
Max. P 0.925296
window269

overview

Window 9

Location 725,010 – 725,130
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.81
Mean single sequence MFE -42.45
Consensus MFE -41.17
Energy contribution -41.17
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -2.06
Structure conservation index 0.97
SVM decision value 1.17
SVM RNA-class probability 0.925296
Prediction RNA

Download alignment: ClustalW | MAF

>pao.411 725010 120 + 6264404
ACCCAGAAGUGCCGAGCAUGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAAAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUUGUGGUUAAGUGGUAAACGAUGUGGG
.((((.(..(((((....((((.....((((((((..(....)..)))))))).....(....)..))))((((((.((((..(....)..))))))))))...))))).....).)))) ( -43.40)
>pau.2632 1583385 120 - 6537648
ACCCAGAAGUGCCGAGCAUGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAAAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUUGUGGUUAAGUGGUAAACGAUGUGGG
.((((.(..(((((....((((.....((((((((..(....)..)))))))).....(....)..))))((((((.((((..(....)..))))))))))...))))).....).)))) ( -43.40)
>pss.496 967681 120 + 6093698
ACCUACAAGUGCCGAGCAUGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAAAGGGAAACAACCCAGACCGUCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGG
.((((((.((.((..((.((((.....((((((((..(....)..)))))))).....(....)..))))((((((..(((..(....)..))).))))))..)).))..))..)))))) ( -40.60)
>pfo.1282 2552483 120 + 6438405
ACCUACAAGUGCCGAGCAUGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAAAGGGAAACAACCCAGACCGUCAGCUAAGGUCCCAAAGUUAUGGUUAAGUGGGAAACGAUGUGGG
.((((((.((.((..((.((((.....((((((((..(....)..)))))))).....(....)..))))((((((.((((..(....)..))))))))))..)).))..))..)))))) ( -42.40)
>consensus
ACCCACAAGUGCCGAGCAUGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAAAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUUAUGGUUAAGUGGGAAACGAUGUGGG
.((((((.((.(((....((((.....((((((((..(....)..)))))))).....(....)..))))((((((.((((..(....)..))))))))))...)))...))..)))))) (-41.17 = -41.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:08:06 2007