Locus 44

Sequence ID pao.401
Location 707,524 – 707,644
Length 120
Max. P 0.833831
window206

overview

Window 6

Location 707,524 – 707,644
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 70.93
Mean single sequence MFE -30.90
Consensus MFE -21.47
Energy contribution -20.83
Covariance contribution -0.64
Combinations/Pair 1.11
Mean z-score -1.10
Structure conservation index 0.69
SVM decision value 0.72
SVM RNA-class probability 0.833831
Prediction RNA

Download alignment: ClustalW | MAF

>pao.401 707524 120 + 6264404
UCGGGUGACCAAUGGCGCCAGCCGGCGCCCGUGCAACUCAACAAACCACAAUCGCCAUCGCGAAGAGGUGUUAACCGUCCUACGCAGGUGCGUCGUUCGCAUCUGACGGGCAUGCCCCAA
..((....))...((((((....)))((((((((.................((((....))))...(((....)))))......((((((((.....))))))))))))))..))).... ( -46.10)
>pau.404 718508 120 + 6537648
UCGGGUGACCAAUGGCGCCAGCCGGCGCCCGUGCAACUCAACAAACCACAAUCGCCAUCGCGAAGAGGUGUUAACCGUCCUACGCAGGUGCGUCGUUCGCAUCUGACGGGCAUGCCCCAA
..((....))...((((((....)))((((((((.................((((....))))...(((....)))))......((((((((.....))))))))))))))..))).... ( -46.10)
>pfo.3012 695148 82 - 6438405
ACAGAUAACCAA-------------------------------------AAUCGCCAUCGCGAAGAGGUGUUAACCGUCCUACGCAGGUGCGUUGUUCGCACUUGACGGGCAUG-CUUGA
............-------------------------------------..((((....))))...(((....)))((((....((((((((.....))))))))..))))...-..... ( -25.50)
>psp.398 793392 82 + 5928787
ACAGACAACCAA-------------------------------------AAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGACUCAACUGACGGGCAUG-CUUGA
.....(((.((.-------------------------------------..((((....))))...(((....)))((((....(((.((((.....)))).)))..)))).))-.))). ( -21.10)
>pst.376 656023 82 + 6397126
ACAGACAACCAA-------------------------------------AAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGGCUCAGCUGACGGGCAUG-CUUGA
.....(((.((.-------------------------------------..((((....))))...(((....)))((((....(((.(((((...))))).)))..)))).))-.))). ( -23.30)
>pss.2771 654683 82 - 6093698
ACAGACAACCAA-------------------------------------AAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGGCUCACCUGACGGGCAUG-CUUGA
.....(((.((.-------------------------------------..((((....))))...(((....)))((((....(((.(((((...))))).)))..)))).))-.))). ( -23.30)
>consensus
ACAGACAACCAA_____________________________________AAUCGCCAACGCGAAGAGGUGUUAACCGUCCUACGCAGAUGAGCCGGUCGCACCUGACGGGCAUG_CUUGA
...................................................((((....))))...(((....)))((((....(((.((((.....)))).)))..))))......... (-21.47 = -20.83 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:06:56 2007