Locus 41

Sequence ID pao.359
Location 629,894 – 629,994
Length 100
Max. P 0.936067
window199 window200

overview

Window 9

Location 629,894 – 629,994
Length 100
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 61.30
Mean single sequence MFE -40.84
Consensus MFE -31.22
Energy contribution -31.22
Covariance contribution 0.00
Combinations/Pair 1.27
Mean z-score -6.30
Structure conservation index 0.76
SVM decision value 1.25
SVM RNA-class probability 0.936067
Prediction RNA

Download alignment: ClustalW | MAF

>pao.359 629894 100 + 6264404
CAUGAGCCGAUUAGAGAGCCUAUUCGGCUCAUUUUGUGAGCCGAUAAUGGCAACUAUUCGGCUCACUGUCUA------AUUCUCAAGCUGGGUUGAUAGCUUGAUG
..((((((((.(((...(((...(((((((((...)))))))))....)))..))).)))))))).......------....((((((((......)))))))).. ( -46.00)
>pau.362 639868 100 + 6537648
CAUGAGCUGAUUAGAGAGCCUAUUCGGCUCAUUUUGUGAGCCGAUAAUGCCAACUAUUCGGCUCACUGUCUA------AUUCUCAAGCUGGGUUGAUAGCUUGAUG
.(((((((((.(((.....))).)))))))))...(((((((((.............)))))))))......------....((((((((......)))))))).. ( -40.52)
>pfo.2965 797944 72 - 6438405
CGUGAGCCGAAUAGAAGUGCUAUUCGGCUCAUUUCGUGAGCCGAAUAUGACGCCUAUUCGGCUCAUCGUCCA----------------------------------
((((((((((((((..((..((((((((((((...))))))))))))..))..)))))))))))).))....---------------------------------- ( -40.60)
>pst.328 572342 92 + 6397126
-GUGAGCCGAAUAAAGGAUUUAUUCGGCUCAUGAGAUGAGCCGAUUGUGCAGGCUAUUCGGCUCAUCUUCCAGCGUCGCUUCUUUGGGUGGGU-------------
-(((((((((((((.....)))))))))))))((((((((((((..((....))...))))))))))))...((.(((((......)))))))------------- ( -42.30)
>pel.2488 1253749 69 - 5888780
--UGAGCCGAAUAAUAGUGCUAUUCGGCUCAUUAUGUGAGCCGAAUAAUCGUGCUAUUUGGCUCA-CGUUCA----------------------------------
--(((((((((((.......)))))))))))..((((((((((((((.......)))))))))))-)))...---------------------------------- ( -34.80)
>consensus
CAUGAGCCGAAUAGAGGGCCUAUUCGGCUCAUUUUGUGAGCCGAUUAUGCCAACUAUUCGGCUCACCGUCCA_______UUCU___G_UGGGU_____________
.(((((((((((((.....)))))))))))))...(((((((((.............)))))))))........................................ (-31.22 = -31.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 629,894 – 629,994
Length 100
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 61.30
Mean single sequence MFE -38.44
Consensus MFE -28.39
Energy contribution -28.95
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -6.61
Structure conservation index 0.74
SVM decision value 1.12
SVM RNA-class probability 0.918110
Prediction RNA

Download alignment: ClustalW | MAF

>pao.359 629894 100 - 6264404
CAUCAAGCUAUCAACCCAGCUUGAGAAU------UAGACAGUGAGCCGAAUAGUUGCCAUUAUCGGCUCACAAAAUGAGCCGAAUAGGCUCUCUAAUCGGCUCAUG
..(((((((........)))))))....------......(((((((((.(((..(((....((((((((.....))))))))...)))...))).))))))))). ( -45.00)
>pau.362 639868 100 - 6537648
CAUCAAGCUAUCAACCCAGCUUGAGAAU------UAGACAGUGAGCCGAAUAGUUGGCAUUAUCGGCUCACAAAAUGAGCCGAAUAGGCUCUCUAAUCAGCUCAUG
..(((((((........)))))))....------......((((((.((.(((..(((....((((((((.....))))))))....)))..))).)).)))))). ( -39.30)
>pfo.2965 797944 72 + 6438405
----------------------------------UGGACGAUGAGCCGAAUAGGCGUCAUAUUCGGCUCACGAAAUGAGCCGAAUAGCACUUCUAUUCGGCUCACG
----------------------------------....((.(((((((((((((.((..(((((((((((.....)))))))))))..)).))))))))))))))) ( -40.80)
>pst.328 572342 92 - 6397126
-------------ACCCACCCAAAGAAGCGACGCUGGAAGAUGAGCCGAAUAGCCUGCACAAUCGGCUCAUCUCAUGAGCCGAAUAAAUCCUUUAUUCGGCUCAC-
-------------......(((..(......)..))).(((((((((((.............)))))))))))..((((((((((((.....)))))))))))).- ( -36.02)
>pel.2488 1253749 69 + 5888780
----------------------------------UGAACG-UGAGCCAAAUAGCACGAUUAUUCGGCUCACAUAAUGAGCCGAAUAGCACUAUUAUUCGGCUCA--
----------------------------------.....(-((((((.(((((.....))))).)))))))....((((((((((((.....))))))))))))-- ( -31.10)
>consensus
_____________ACCCA_C___AGAA_______UGGACGAUGAGCCGAAUAGCCGGCAUAAUCGGCUCACAAAAUGAGCCGAAUAGCACCUCUAUUCGGCUCACG
.........................................((((((((((((.........((((((((.....)))))))).........)))))))))))).. (-28.39 = -28.95 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:06:50 2007