| Sequence ID | pao.3219 |
|---|---|
| Location | 6,071,784 – 6,071,911 |
| Length | 127 |
| Max. P | 0.647080 |
| Location | 6,071,784 – 6,071,889 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.24 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -23.90 |
| Energy contribution | -23.18 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3219 6071784 105 - 6264404 -------------UCGGCAAAACCGCGUUGGAAACGGCUUCGGAAAGCUCGGUUGCCGUUCGGGGACUCCGCUUCCCCGUUCGUUUUCGCCCGGUUU--CUCCAGCUCGCCAGUUCGUCG -------------..((..((((((.(.((((((((((.((((.....))))..)))(..((((((.......))))))..)))))))).)))))))--..))................. ( -36.00) >pau.3358 6344702 105 - 6537648 -------------UCGGCAAAACCGCGUUGGAAACGGCUUCGGAAAACUCGGUUGCCGUUCGGAGACUCCGCUUCCCCGGCUGUUUUCGCCCGGUUU--CUCCAGCUCGCCAGAUCGUCG -------------..(((....(((.((((....))))..))).......((..((((..(((((((.(((......)))..)))))))..))))..--..)).....)))......... ( -35.40) >pss.1537 2926821 120 - 6093698 AAAGUGGCUGCGCUCGGUGAUGCUUCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACACGUAGACUCCGCUUCCUCGCCUGUUUUUGCCUCGCCUGACCUUCGCUCGCCGACUUUUCG ((((((((.(((.(((((((.((......((((((((((..((((.((...(((((.....)))))....))))))..)))))))))))).))))).))....)))..))).)))))... ( -40.30) >pst.2579 4881817 120 - 6397126 AAAGUGGCUGCGCUCGGUGAUGCUGCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACCCGUAGACUCCGCUUCCUCGUCUGUUUUUGCCUUGCCUGACCUUCGCUCGCCGACUUUUCG ((((((((.(((...(((.(.((...((.((((((((((..((((.((...(((((.....)))))....))))))..))))))))))))...)).).)))..)))..))).)))))... ( -37.90) >pss.1537 2926821 120 - 6093698 AAAGUGGCUGCGCUCGGUGAUGCUUCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACACGUAGACUCCGCUUCCUCGCCUGUUUUUGCCUCGCCUGACCUUCGCUCGCCGACUUUUCG ((((((((.(((.(((((((.((......((((((((((..((((.((...(((((.....)))))....))))))..)))))))))))).))))).))....)))..))).)))))... ( -40.30) >consensus AAAGUGGCUGCGCUCGGUGAUGCUGCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACACGUAGACUCCGCUUCCUCGCCUGUUUUUGCCUCGCCUGACCUUCGCUCGCCGACUUUUCG .............(((((((......(.(((((((((((..((((.((...(((((.....)))))....))))))..))))))))))).)..((.........)))))))))....... (-23.90 = -23.18 + -0.72)
| Location | 6,071,805 – 6,071,911 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.60 |
| Mean single sequence MFE | -36.10 |
| Consensus MFE | -22.56 |
| Energy contribution | -20.80 |
| Covariance contribution | -1.76 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3219 6071805 106 - 6264404 AAACCUUCGCGAACUCUGUACG--------------UCGGCAAAACCGCGUUGGAAACGGCUUCGGAAAGCUCGGUUGCCGUUCGGGGACUCCGCUUCCCCGUUCGUUUUCGCCCGGUUU (((((...(((((..(......--------------..((((..((((.((((....)..(....)..))).))))))))(..((((((.......))))))..))..)))))..))))) ( -37.10) >pau.3358 6344723 104 - 6537648 --ACCUUCGCGGACUCUGUACG--------------UCGGCAAAACCGCGUUGGAAACGGCUUCGGAAAACUCGGUUGCCGUUCGGAGACUCCGCUUCCCCGGCUGUUUUCGCCCGGUUU --......((((((((((....--------------.(((((..((((.((((....)..(....)..))).)))))))))..)))))..)))))....((((.((....)).))))... ( -37.80) >pss.1537 2926844 114 - 6093698 ------UCUUAGGCUCUGUACGAAAAGUGGCUGCGCUCGGUGAUGCUUCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACACGUAGACUCCGCUUCCUCGCCUGUUUUUGCCUCGCCU ------....((((.....(((((..((.((((....)))).))..)))))(((((((((((..((((.((...(((((.....)))))....))))))..)))))))))))....)))) ( -36.90) >pst.2579 4881840 114 - 6397126 ------UCCUAGGCUCUGUACGAAAAGUGGCUGCGCUCGGUGAUGCUGCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACCCGUAGACUCCGCUUCCUCGUCUGUUUUUGCCUUGCCU ------....((((............(..((..(((...)))..))..)(.(((((((((((..((((.((...(((((.....)))))....))))))..))))))))))).)..)))) ( -31.80) >pss.1537 2926844 114 - 6093698 ------UCUUAGGCUCUGUACGAAAAGUGGCUGCGCUCGGUGAUGCUUCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACACGUAGACUCCGCUUCCUCGCCUGUUUUUGCCUCGCCU ------....((((.....(((((..((.((((....)))).))..)))))(((((((((((..((((.((...(((((.....)))))....))))))..)))))))))))....)))) ( -36.90) >consensus ______UCGUAGGCUCUGUACGAAAAGUGGCUGCGCUCGGUGAUGCUGCGUUAAAAACAGGCUCGGAAUGCUCAUUUACAACACGUAGACUCCGCUUCCUCGCCUGUUUUUGCCUCGCCU ..........((((.......................(((.....))).(.(((((((((((..((((.((...(((((.....)))))....))))))..))))))))))).)..)))) (-22.56 = -20.80 + -1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:03:24 2007