Locus 35

Sequence ID pao.3034
Location 5,749,352 – 5,749,431
Length 79
Max. P 0.680829
window184

overview

Window 4

Location 5,749,352 – 5,749,431
Length 79
Sequences 6
Columns 79
Reading direction reverse
Mean pairwise identity 71.52
Mean single sequence MFE -12.85
Consensus MFE -5.97
Energy contribution -6.25
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -1.72
Structure conservation index 0.46
SVM decision value 0.31
SVM RNA-class probability 0.680829
Prediction RNA

Download alignment: ClustalW | MAF

>pao.3034 5749352 79 - 6264404
UUUUAUUUGUAUAUACAUAUACAGACGAUUAAGCGGUGCGUAAACUCACUUCAUCGACGCCUCGACAAGGAGUCUCUCC
.....((((((((....)))))))).(((.(((.(((......)).).))).)))(((.(((.....))).)))..... ( -16.00)
>pfo.198 6029969 53 + 6438405
UGUUAUUUGUAUAUACAUAUACAGACGUUUGCCUGCCCGGUAAA-CUCCGGCAA-------------------------
((((.((((((((....)))))))).(((((((.....))))))-)...)))).------------------------- ( -14.30)
>psp.219 397494 54 - 5928787
UGUAAUUUGUAUAUACAUAUACAGACGUUUAAGCGACCGGUAAACCUUCGGCAC-------------------------
.....((((((((....))))))))(((....))).((((.......))))...------------------------- (  -9.70)
>pst.3073 508332 54 + 6397126
UGUAAUUUGUAUAUACAUAUACAGACGUUUACGGAGCCGGUAAACCUUCGGCAC-------------------------
.((((((((((((....))))))))...))))...(((((.......)))))..------------------------- ( -14.20)
>pf5.242 6615606 53 + 7074893
UGUUAUUUGUAUAUACAUAUACAGACGUUUGCCUGCCCGGUAAA-CUCCGGCAA-------------------------
((((.((((((((....)))))))).(((((((.....))))))-)...)))).------------------------- ( -14.30)
>pss.237 391250 54 - 6093698
UGUAAUUUGUAUAUACAUAUACAGACGUUUAAGCGACCGGUAAACCUUCUGCAU-------------------------
((((.((((((((....))))))))(((....)))...((....))...)))).------------------------- (  -8.60)
>consensus
UGUAAUUUGUAUAUACAUAUACAGACGUUUAAGCGACCGGUAAACCUUCGGCAA_________________________
.....((((((((....))))))))...........((((.......))))............................ ( -5.97 =  -6.25 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:06:34 2007