| Sequence ID | pao.2796 |
|---|---|
| Location | 5,295,014 – 5,295,072 |
| Length | 58 |
| Max. P | 0.975575 |
| Location | 5,295,014 – 5,295,072 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 84.33 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -27.24 |
| Energy contribution | -26.30 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 1.02 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2796 5295014 58 - 6264404 CGCU--UUCCAGGCCGCCGCAGCGGUCGGCGUCGCUCGGACGGUUCCGGGCGCUUACGUU ....--.....((((((....))))))(((((((((((((....))))))))...))))) ( -26.20) >pau.2934 5566945 58 - 6537648 UGCU--UUCCAGGCCGCCGCAGCGGCCGGCGUCGCUCGGACGGUUCCGGGCGCUUACGUU ....--.....((((((....))))))(((((((((((((....))))))))...))))) ( -28.90) >pf5.2786 1787227 58 + 7074893 UGCCCCG--CAGGCCACCGCAGUGGCCAACGUCGCUCGGACGGUUCCGGGCGCUUACGUC (((...)--))((((((....)))))).((((((((((((....))))))))...)))). ( -26.80) >ppk.467 5226520 56 + 6181863 UGAU--U--CAGGCCGCCACAUCGGCCAACGUCGCUCGGACGGUUCCGGGCGCUUACGUC ....--.--..(((((......))))).((((((((((((....))))))))...)))). ( -24.50) >pel.514 4878873 55 + 5888780 UGAU--U--C-GGCCGCCGCAGCGGCCAACGUCGCUCGGACGGUUCCGGGCGCUUACGUC ....--.--.-((((((....)))))).((((((((((((....))))))))...)))). ( -28.30) >pfo.2563 1550797 55 + 6438405 CGCC--A--CAGGUCACCACAGUGACCAGCGUCGCUCGGACGGUUCCGGGCGCUUACGU- ....--.--..((((((....)))))).((((((((((((....))))))))...))))- ( -24.80) >consensus UGCU__U__CAGGCCGCCGCAGCGGCCAACGUCGCUCGGACGGUUCCGGGCGCUUACGUC ...........((((((....)))))).((((((((((((....))))))))...)))). (-27.24 = -26.30 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:06:12 2007