Locus 26

Sequence ID pao.3109
Location 5,884,365 – 5,884,483
Length 118
Max. P 0.892093
window146

overview

Window 6

Location 5,884,365 – 5,884,483
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.01
Mean single sequence MFE -48.37
Consensus MFE -42.78
Energy contribution -42.65
Covariance contribution -0.13
Combinations/Pair 1.18
Mean z-score -1.97
Structure conservation index 0.88
SVM decision value 0.97
SVM RNA-class probability 0.892093
Prediction RNA

Download alignment: ClustalW | MAF

>pao.3109 5884365 118 + 6264404
CUGCAACAACGGAGGUUGCCAGUU-GGACCGGUGUGCAUGUCCGCACGACGGAAAGCCUUAAGGUCUACUGCAACCGCCACCUUGAACUUUCGGGUUCAAGGGCUAACCCGACAGCGGC-
((((......((.((((((.(((.-((((((.(((((......))))).)((....))....)))))))))))))).)).(((((((((....)))))))))............)))).- ( -48.40)
>pau.3247 6156578 118 + 6537648
CUGCAACAACGGAGGUUGCCAGUU-GGACCGGUGUGCAUGUCCGCACGACGGAAAGCCUUAAGGUCUACUGCAACCGCCACCUUGAACUUUCGGGUUCAAGGGCUAACCCGACAGCGGC-
((((......((.((((((.(((.-((((((.(((((......))))).)((....))....)))))))))))))).)).(((((((((....)))))))))............)))).- ( -48.40)
>pfo.3214 6104377 118 + 6438405
GCACUACCCUGGGGGUUGCACGUU-GGGCUGGUGUGCAUGUCCGCCAGACGGAAAGCCUUAAAGCCUACUGCAUCCUCCACCUUGAACUCUCGGGUUCAAGGGCUAAGUCGACAGCGGC-
((.......((((((.((((.((.-(((((...(.((...((((.....))))..)))....))))))))))).))))))(((((((((....)))))))))))...((((....))))- ( -48.50)
>pf5.3604 6787352 118 + 7074893
GCACUACCCUGGAAGUUGCACGUU-GGGCUGGUGUGCAUGUCCGCUAGACGGAAAGCCUUAAAGCCUGCUGCAUCUUCCGCCUUGAACUUUCGGGUUCAAGGGCUAAGUCGACAGCGGU-
.....(((..(((((.((((.((.-(((((...(.((...((((.....))))..)))....))))))))))).))))).(((((((((....)))))))))(((........))))))- ( -43.30)
>ppk.3035 5934711 120 + 6181863
GCACAACCACGGGGGUUGCACGCUGGGGCCGGUGUGCAUGUCCGCCCGACGGAAAGCCUUAACGCCCCCUGCAAUCUCCACCUUGAACUUUCGGGUUCAAGGGCUACACCGAUAGCGGUC
.....(((..((((((((((....((((((((.(((......))))))..((....)).....))))).)))))))))).(((((((((....)))))))))((((......))))))). ( -50.80)
>pel.3067 5639598 120 + 5888780
GCACAACCACGGGGGUUGCACGCUGGGGCCGGUGUGCAUGUCCGCCCGACGGAAAGCCUUAACGCCCCCUGCAAUCUCCACCUUGAACUUUCGGGUUCAAGGGCUACACCGAUAGCGGUC
.....(((..((((((((((....((((((((.(((......))))))..((....)).....))))).)))))))))).(((((((((....)))))))))((((......))))))). ( -50.80)
>consensus
GCACAACCACGGAGGUUGCACGUU_GGGCCGGUGUGCAUGUCCGCCCGACGGAAAGCCUUAAAGCCUACUGCAACCUCCACCUUGAACUUUCGGGUUCAAGGGCUAAACCGACAGCGGC_
..........((((((((((.....(((((...(.((...((((.....))))..)))....)))))..)))))))))).(((((((((....)))))))))(((........))).... (-42.78 = -42.65 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:05:53 2007