Locus 218

Sequence ID pao.2696
Location 5,112,938 – 5,113,004
Length 66
Max. P 0.999997
window836 window837

overview

Window 6

Location 5,112,938 – 5,113,004
Length 66
Sequences 3
Columns 66
Reading direction forward
Mean pairwise identity 72.68
Mean single sequence MFE -23.90
Consensus MFE -19.60
Energy contribution -19.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -4.72
Structure conservation index 0.82
SVM decision value 5.24
SVM RNA-class probability 0.999980
Prediction RNA

Download alignment: ClustalW | MAF

>pao.2696 5112938 66 + 6264404
GGCACGCCUUGCUCGAAUAAAAAACCGGCCAAUGGCCGGUUUUUUAUUGCCAGCGACUCGCUCGCU
(((..((...))...(((((((((((((((...))))))))))))))))))(((((.....))))) ( -30.00)
>pau.2833 5385404 62 + 6537648
--CACGCCUUGCUCGAAUAAAAAACCGGCCAAUGGCCGGUUUUUUAUUGCCCACGAUUCGCUCG--
--........((((((((((((((((((((...))))))))))))))).....)))...))...-- ( -21.20)
>ppk.451 902597 50 + 6181863
-----------CCCCAAUAAAAAACCGGCCAAGCGCCGGUUUUUUAUUGCCUGCAAUCAGC-----
-----------...(((((((((((((((.....)))))))))))))))............----- ( -20.50)
>consensus
__CACGCCUUGCUCGAAUAAAAAACCGGCCAAUGGCCGGUUUUUUAUUGCCAGCGAUUCGCUCG__
...............((((((((((((((.....)))))))))))))).................. (-19.60 = -19.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 5,112,938 – 5,113,004
Length 66
Sequences 3
Columns 66
Reading direction reverse
Mean pairwise identity 72.68
Mean single sequence MFE -26.57
Consensus MFE -20.29
Energy contribution -20.07
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -4.29
Structure conservation index 0.76
SVM decision value 6.14
SVM RNA-class probability 0.999997
Prediction RNA

Download alignment: ClustalW | MAF

>pao.2696 5112938 66 - 6264404
AGCGAGCGAGUCGCUGGCAAUAAAAAACCGGCCAUUGGCCGGUUUUUUAUUCGAGCAAGGCGUGCC
.....(((.((((((.(.(((((((((((((((...)))))))))))))))).)))..))).))). ( -31.00)
>pau.2833 5385404 62 - 6537648
--CGAGCGAAUCGUGGGCAAUAAAAAACCGGCCAUUGGCCGGUUUUUUAUUCGAGCAAGGCGUG--
--...(((..(.((..(.(((((((((((((((...))))))))))))))))..)).)..))).-- ( -25.20)
>ppk.451 902597 50 - 6181863
-----GCUGAUUGCAGGCAAUAAAAAACCGGCGCUUGGCCGGUUUUUUAUUGGGG-----------
-----((.....))...(((((((((((((((.....)))))))))))))))...----------- ( -23.50)
>consensus
__CGAGCGAAUCGCAGGCAAUAAAAAACCGGCCAUUGGCCGGUUUUUUAUUCGAGCAAGGCGUG__
.....((.....))....((((((((((((((.....))))))))))))))............... (-20.29 = -20.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:21 2007