Locus 216

Sequence ID pao.198
Location 363,179 – 363,239
Length 60
Max. P 0.758119
window832

overview

Window 2

Location 363,179 – 363,239
Length 60
Sequences 6
Columns 60
Reading direction reverse
Mean pairwise identity 72.33
Mean single sequence MFE -14.08
Consensus MFE -9.28
Energy contribution -8.62
Covariance contribution -0.67
Combinations/Pair 1.40
Mean z-score -1.19
Structure conservation index 0.66
SVM decision value 0.49
SVM RNA-class probability 0.758119
Prediction RNA

Download alignment: ClustalW | MAF

>pao.198 363179 60 - 6264404
CCGGCCAGCCAGCUUGGCCAUUUCGAUCCCUUUUUGACCGUCUACAGGGUUCUCCCCGGC
((((((((.....)))))).....((.((((....(.....)...)))).)).....)). ( -15.80)
>pau.204 377349 60 - 6537648
CCGGCCAGCCAGUUUGGCCAUCUCGAUCCCUUUUUGACCGUCUACAGGGUUCUCCCCGGC
((((((((.....)))))).....((.((((....(.....)...)))).)).....)). ( -15.80)
>ppk.3127 94144 60 + 6181863
CCGGCCAAAGACCUUGGCCAUAUCAAUCCCCUUUUGGCCGUUUGCGUCGUUCUCCCCUGC
.((((((((.....((((((..............)))))))))).))))........... ( -13.44)
>pel.3179 79258 60 + 5888780
UCGGCCAGUACCCGUGGCCACAUCGAUCCCCUUUUGGCCGUUUGCAUCGUUCUCCCUGGA
..(((((.......)))))..........((....(..((.......))..).....)). ( -11.10)
>pfo.3323 132039 60 + 6438405
CAGGUCAGUAUUUUUGGCCACAUCGAUCCCCUUUUGGCCUCUCUGGCCGUUCUCCGAUUC
..((((((.....)))))).....((((......(((((.....)))))......)))). ( -17.20)
>pf5.3707 96005 60 + 7074893
UCGGUCAAACACUUUGGCCACAUCAAUCCCCUUUUGGCCGCUCCUGCCGUUCUCCCAAAC
..((...(((.....(((((..............)))))((....)).)))...)).... ( -11.14)
>consensus
CCGGCCAGACACCUUGGCCACAUCGAUCCCCUUUUGGCCGUUUACACCGUUCUCCCCGGC
..((((((.....))))))...((((.......))))....................... ( -9.28 =  -8.62 +  -0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:16 2007