Locus 215

Sequence ID pao.1640
Location 3,118,224 – 3,118,295
Length 71
Max. P 0.814495
window831

overview

Window 1

Location 3,118,224 – 3,118,295
Length 71
Sequences 4
Columns 71
Reading direction reverse
Mean pairwise identity 74.94
Mean single sequence MFE -17.43
Consensus MFE -8.34
Energy contribution -8.78
Covariance contribution 0.44
Combinations/Pair 1.18
Mean z-score -2.32
Structure conservation index 0.48
SVM decision value 0.66
SVM RNA-class probability 0.814495
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1640 3118224 71 - 6264404
GGCAAUUCUCCUAUCAGCAGAUCUGAAAGCUGCUGACUUUUUCUGUCAAGAAAAUUGAUCCAACCUUGCCC
(((((........(((((((.........)))))))..((((((....))))))...........))))). ( -18.80)
>pau.1361 4081899 71 + 6537648
GGCAAUUCUCCUAUCAGCAGAUCUGAAAGCUGCUGACUUUUUCUGUCAAGAAAAUUGAUCCAACCUUGCCC
(((((........(((((((.........)))))))..((((((....))))))...........))))). ( -18.80)
>pel.1032 3958192 60 + 5888780
-----------UAUCAGUGAAUCUGAUGGCUGCUGACUUUUUCUGUCAAGUUUAUUGACGCAUCCUUGCCC
-----------.(((((.....)))))((.(((((((.......)))).(((....)))))).))...... ( -13.60)
>ppk.1306 3613869 64 + 6181863
-------CUCCUGUCAGUUGAUCUGACAGCUGCUGACUUUUGCUGUCAAGUGCGUUGAAGCAUGAUCGCCC
-------............(((((((((((...........))))))).((((......)))))))).... ( -18.50)
>consensus
_______CUCCUAUCAGCAGAUCUGAAAGCUGCUGACUUUUUCUGUCAAGAAAAUUGAUCCAACCUUGCCC
..........(((((((.....)))))))....((((.......))))....................... ( -8.34 =  -8.78 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:15 2007