Locus 214

Sequence ID pao.1372
Location 2,553,890 – 2,553,964
Length 74
Max. P 0.645705
window829 window830

overview

Window 9

Location 2,553,890 – 2,553,964
Length 74
Sequences 3
Columns 76
Reading direction forward
Mean pairwise identity 77.68
Mean single sequence MFE -22.77
Consensus MFE -15.64
Energy contribution -16.20
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.43
Structure conservation index 0.69
SVM decision value 0.10
SVM RNA-class probability 0.581308
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1372 2553890 74 + 6264404
GCGCUGCAAAA--GCGGAAAAAGACGGAUAGAGUUCCGUUCUAUCCGGACCGUCAUGUCCAUAAUCGGAGCCUUGC
(((((.....)--))((.....((.((((((((.....))))))))((((......))))....))....))..)) ( -21.30)
>pau.1657 3455709 72 - 6537648
GCGCUGCAAAA--GCGGAAAAAGACGGAUAGAGUUCCGCUCUAUCCGGACCUUCAUGUCCGUAAUCGGAGCCUU--
..(((.(....--(((((..(((.(((((((((.....)))))))))...)))....)))))....).)))...-- ( -27.00)
>pel.1940 3629877 70 + 5888780
GCGUUGCGAUAUUGCGGAAAAAGCCGGGUAGAAUUCCGCUCACCCAGGACAUCGAUGUCCGCAAUCGGAG------
......((((..(((((......))((((.((.......)))))).(((((....))))))))))))...------ ( -20.00)
>consensus
GCGCUGCAAAA__GCGGAAAAAGACGGAUAGAGUUCCGCUCUAUCCGGACCUUCAUGUCCGUAAUCGGAGCCUU__
...((((......))))........((((((((.....))))))))((((......))))................ (-15.64 = -16.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 2,553,890 – 2,553,964
Length 74
Sequences 3
Columns 76
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -23.65
Consensus MFE -14.67
Energy contribution -15.90
Covariance contribution 1.23
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.62
SVM decision value 0.23
SVM RNA-class probability 0.645705
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1372 2553890 74 - 6264404
GCAAGGCUCCGAUUAUGGACAUGACGGUCCGGAUAGAACGGAACUCUAUCCGUCUUUUUCCGC--UUUUGCAGCGC
(((((((.........((((......))))(((.(((.((((......)))))))...)))))--.)))))..... ( -23.80)
>pau.1657 3455709 72 + 6537648
--AAGGCUCCGAUUACGGACAUGAAGGUCCGGAUAGAGCGGAACUCUAUCCGUCUUUUUCCGC--UUUUGCAGCGC
--...(((.(((...((((...(((((..(((((((((.....)))))))))))))).)))).--..))).))).. ( -26.60)
>pel.1940 3629877 70 - 5888780
------CUCCGAUUGCGGACAUCGAUGUCCUGGGUGAGCGGAAUUCUACCCGGCUUUUUCCGCAAUAUCGCAACGC
------...((.(((((((((....)))))..((((.((((((..............))))))..)))))))))). ( -20.54)
>consensus
__AAGGCUCCGAUUACGGACAUGAAGGUCCGGAUAGAGCGGAACUCUAUCCGUCUUUUUCCGC__UUUUGCAGCGC
.....(((.(((....((((......))))(((.(((((((........))).)))).)))......))).))).. (-14.67 = -15.90 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:14 2007