| Sequence ID | pao.969 |
|---|---|
| Location | 1,733,858 – 1,733,918 |
| Length | 60 |
| Max. P | 0.997753 |
| Location | 1,733,858 – 1,733,918 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 81.11 |
| Mean single sequence MFE | -28.81 |
| Consensus MFE | -25.02 |
| Energy contribution | -25.02 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.92 |
| Structure conservation index | 0.87 |
| SVM decision value | 2.92 |
| SVM RNA-class probability | 0.997753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.969 1733858 60 + 6264404 GACGUCAGGCGAACCCC-AGGAAGGCCGCCUCCGGGCGGCCUUUUUCAUGAGCCGACGAAA ..((((.(((.......-((((((((((((....)))))))))))).....)))))))... ( -31.30) >pel.721 4492191 56 - 5888780 --CGUCCAGCUAACC---AAGAAGGCUGCCUCUGGGCAGCCUUUUUUAUGGGCCGUCACAA --.(((((.......---((((((((((((....))))))))))))..)))))........ ( -24.90) >pau.2058 2628000 59 - 6537648 --CGUCAGGCGAACCCCCAGGAAGGCCGCCUCCGGGCGGCCUUUUUCAUGAGCCGACGAAA --((((.(((........((((((((((((....)))))))))))).....)))))))... ( -30.22) >consensus __CGUCAGGCGAACCCC_AGGAAGGCCGCCUCCGGGCGGCCUUUUUCAUGAGCCGACGAAA ...(((.(((........((((((((((((....)))))))))))).....)))))).... (-25.02 = -25.02 + 0.00)
| Location | 1,733,858 – 1,733,918 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 81.11 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -23.54 |
| Energy contribution | -22.77 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.969 1733858 60 - 6264404 UUUCGUCGGCUCAUGAAAAAGGCCGCCCGGAGGCGGCCUUCCU-GGGGUUCGCCUGACGUC ...((((((((((.((...((((((((....)))))))))).)-)))......)))))).. ( -26.20) >pel.721 4492191 56 + 5888780 UUGUGACGGCCCAUAAAAAAGGCUGCCCAGAGGCAGCCUUCUU---GGUUAGCUGGACG-- ..((..(((((((.....(((((((((....)))))))))..)---))...)))).)).-- ( -23.00) >pau.2058 2628000 59 + 6537648 UUUCGUCGGCUCAUGAAAAAGGCCGCCCGGAGGCGGCCUUCCUGGGGGUUCGCCUGACG-- ...(((((((........(((((((((....)))))))))((....))...))).))))-- ( -26.90) >consensus UUUCGUCGGCUCAUGAAAAAGGCCGCCCGGAGGCGGCCUUCCU_GGGGUUCGCCUGACG__ ...(((((((((......(((((((((....)))))))))......))...))).)))).. (-23.54 = -22.77 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:12 2007