Locus 212

Sequence ID pao.936
Location 1,679,078 – 1,679,192
Length 114
Max. P 0.683176
window826

overview

Window 6

Location 1,679,078 – 1,679,192
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.49
Mean single sequence MFE -37.80
Consensus MFE -26.27
Energy contribution -27.17
Covariance contribution 0.90
Combinations/Pair 1.13
Mean z-score -1.88
Structure conservation index 0.69
SVM decision value 0.31
SVM RNA-class probability 0.683176
Prediction RNA

Download alignment: ClustalW | MAF

>pao.936 1679078 114 + 6264404
AG---CUAGAGGUCGCCGGUCCAGUGACGCUCGUGGGAGACCAGACGGGAAGUGGGGAGAGGU---AAUGCCUUGGUGUUCAACAUAAUGAACAUGAUAUUACCUCAGGGCAUCGUAAAA
..---.....(((.(((..((((.(....(((((((....))..))))).).))))..(((((---((((...(.(((((((......))))))).))))))))))..))))))...... ( -39.30)
>pau.2092 2573203 114 - 6537648
AG---CUAGAGGUCGCCGGUCCAGUGACGCUCGCGGGAGACCAGACGGGAAGUGGGGAGAGGU---AAUGCCUUAGUGUUCAACAUAAUGAACAUGAUAUUACCUCAGGGCAUCGUAAAA
.(---((.....((.(((.(((.(((.....)))((....)).....)))..))).))(((((---((((.....(((((((......)))))))..)))))))))..)))......... ( -38.80)
>pel.3002 5538630 120 + 5888780
AGGAACUAGAGGUCGCCGGUCCAGUGACGUUCACGGGAAACCAGGCGGGAGGUGGAGAGGAGCUUGAAAGCUUUACUGUUCAACAUAAUGCACACAAGAUUAGCUGAGCUGAUCGAAUAA
..((((......(((((..(((.(((.....)))((....))....))).)))))((..(((((....)))))..))))))................(((((((...)))))))...... ( -35.30)
>consensus
AG___CUAGAGGUCGCCGGUCCAGUGACGCUCGCGGGAGACCAGACGGGAAGUGGGGAGAGGU___AAUGCCUUAGUGUUCAACAUAAUGAACAUGAUAUUACCUCAGGGCAUCGUAAAA
........((((((((.......))))).)))..((....))..((((....(((((.(((((......))))).(((((((......))))))).......))))).....)))).... (-26.27 = -27.17 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:10 2007