| Sequence ID | pao.2274 |
|---|---|
| Location | 4,267,069 – 4,267,144 |
| Length | 75 |
| Max. P | 0.993595 |
| Location | 4,267,069 – 4,267,144 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 75.35 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.69 |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.993595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2274 4267069 75 + 6264404 AUUUCAGGCCUUACCUAAAAUAAAACCCGCGAAUUAUACGCGGGUUCCCGGCAAAUGCGUAGGGCGGGCCUAUGG .....((((((..((((......((((((((.......))))))))....((....)).))))..)))))).... ( -30.50) >pel.540 4821872 55 - 5888780 AGUGUUG------CGAAAAAUUAAACCCGCGAAUUAUACGCGGGUUCCAGGGGAUUGCCUA-------------- ......(------(((........(((((((.......)))))))(((...)))))))...-------------- ( -15.30) >pfo.2741 5207172 53 + 6438405 AUUU--G------CGAAAAAUUAAACCCGCGAAUUAUACGCGGGUUCUUGGGUAUUGCCUA-------------- ....--.------..........((((((((.......))))))))..((((.....))))-------------- ( -15.70) >pf5.3023 5713525 55 + 7074893 AUUAAAG------CGAAAAAUUAAACCCGCGAAUUAUACGCGGGUUUAUAGGGAUUGCCUA-------------- ......(------(((.....((((((((((.......))))))))))......))))...-------------- ( -18.60) >pss.733 4693775 55 - 6093698 AUUGAAG------CGAAAAAUUAAACCCGCGAAUUAUACGCGGGUUCUGGUGUAUUGCCUA-------------- ......(------(((...((((((((((((.......)))))))).))))...))))...-------------- ( -17.90) >ppk.485 5198253 55 - 6181863 AGUGUUA------CGAAAAAUUAAACCCGCGAAUUAUACGCGGGUUCCGGGGGAUUGCCUA-------------- .......------..........((((((((.......))))))))..(((......))).-------------- ( -14.90) >consensus AUUGAAG______CGAAAAAUUAAACCCGCGAAUUAUACGCGGGUUCCGGGGGAUUGCCUA______________ .......................((((((((.......))))))))............................. (-13.00 = -13.00 + 0.00)
| Location | 4,267,069 – 4,267,144 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 75.35 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.17 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.61 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2274 4267069 75 - 6264404 CCAUAGGCCCGCCCUACGCAUUUGCCGGGAACCCGCGUAUAAUUCGCGGGUUUUAUUUUAGGUAAGGCCUGAAAU ...((((((.((.....))..(((((.((((((((((.......))))))))))......))))))))))).... ( -31.10) >pel.540 4821872 55 + 5888780 --------------UAGGCAAUCCCCUGGAACCCGCGUAUAAUUCGCGGGUUUAAUUUUUCG------CAACACU --------------((((......))))(((((((((.......))))))))).........------....... ( -17.40) >pfo.2741 5207172 53 - 6438405 --------------UAGGCAAUACCCAAGAACCCGCGUAUAAUUCGCGGGUUUAAUUUUUCG------C--AAAU --------------..((......))..(((((((((.......))))))))).........------.--.... ( -15.80) >pf5.3023 5713525 55 - 7074893 --------------UAGGCAAUCCCUAUAAACCCGCGUAUAAUUCGCGGGUUUAAUUUUUCG------CUUUAAU --------------((((.....))))((((((((((.......))))))))))........------....... ( -18.20) >pss.733 4693775 55 + 6093698 --------------UAGGCAAUACACCAGAACCCGCGUAUAAUUCGCGGGUUUAAUUUUUCG------CUUCAAU --------------.((((.........(((((((((.......)))))))))........)------))).... ( -16.43) >ppk.485 5198253 55 + 6181863 --------------UAGGCAAUCCCCCGGAACCCGCGUAUAAUUCGCGGGUUUAAUUUUUCG------UAACACU --------------..............(((((((((.......))))))))).........------....... ( -15.40) >consensus ______________UAGGCAAUCCCCAGGAACCCGCGUAUAAUUCGCGGGUUUAAUUUUUCG______CUACAAU ............................(((((((((.......)))))))))...................... (-15.31 = -15.17 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:03 2007