| Sequence ID | pao.3048 |
|---|---|
| Location | 5,775,537 – 5,775,617 |
| Length | 80 |
| Max. P | 0.769396 |
| Location | 5,775,537 – 5,775,617 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 59.36 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -14.81 |
| Energy contribution | -16.50 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3048 5775537 80 + 6264404 AUGCCCGGCGGUAGCGCAGCGAUCCGCGCCUCCGCC-------------CUCCCGUUUGGGGACCUCGGUACAGGCAGGCUGAGAAUUCCCCC ......(((((..((((........))))..)))))-------------.........(((((.((((((........))))))...))))). ( -34.00) >pau.3186 6047700 80 + 6537648 AUGCCCGGCGGCAGCGCAGCGAUCCGCGCCUCCGCC-------------CUCCCGUUUGGGGACCUCGGUACAGGCAGGCUGAGAAUUCCCCC ......(((((..((((........))))..)))))-------------.........(((((.((((((........))))))...))))). ( -32.70) >pf5.229 6646914 76 - 7074893 ACACCAGGC-------------UCGGCACGCACAUCGCGACGGCCAAAGGU----UUCGGGAACCCCAGUACAGGCAGGCUGGGACUUCCCUC ..(((.(((-------------.((...(((.....))).)))))...)))----...(((((.((((((........))))))..))))).. ( -28.10) >pfo.185 6055906 63 - 6438405 ACACCGGAC-------------UCAGCGAGUCCACC-------------CU----UUUGGGGCCCUUGAUACAGGCAGGUCAGGGGUUCCUUC .....((((-------------((...))))))...-------------..----...((((((((((((........))))))))))))... ( -27.90) >consensus ACACCCGGC_____________UCCGCGCCUCCACC_____________CU____UUUGGGGACCUCGGUACAGGCAGGCUGAGAAUUCCCCC ......(((((..((((........))))..)))))......................((((..((((((........))))))...)))).. (-14.81 = -16.50 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:05:28 2007