Locus 209

Sequence ID pao.2878
Location 5,433,991 – 5,434,089
Length 98
Max. P 0.543035
window817

overview

Window 7

Location 5,433,991 – 5,434,089
Length 98
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 72.65
Mean single sequence MFE -34.30
Consensus MFE -16.52
Energy contribution -15.45
Covariance contribution -1.08
Combinations/Pair 1.53
Mean z-score -1.64
Structure conservation index 0.48
SVM decision value 0.02
SVM RNA-class probability 0.543035
Prediction RNA

Download alignment: ClustalW | MAF

>pao.2878 5433991 98 - 6264404
CAAUGGCGCAUUUUCGCUCUUAGCAUUUGCUCGCAAUGCUGCUAAAUUGCGCGACC-UUUUCGGGCGGUCC-----CCAUGC-----CGCCCCUGCGCAGCCCCUGCCU
.....(((((...((((....(((....))).(((((........)))))))))..-.....(((((((..-----....))-----))))).)))))........... ( -34.60)
>pel.2789 5154446 102 - 5888780
-AAUGGCGCAAUCCUGUACUUAGCAAUCGCCGGAUUUAUCGUUACACUGCGCGCCC-UUUUCGGGCUGUCGCAGGACCUUGC-----GGCAGUAGCGCCGCCCCUGCCA
-...((((((((((.((...........)).))))).........(((((..((((-.....))))...(((((....))))-----)))))).))))).......... ( -35.00)
>pf5.400 6284362 102 + 7074893
-AUUGGCGCUGAUUGGCUCUUAGCAACCGGGCUUUUUGCCGUUACACUGCGCGA-C-UUUUCAAGCUGAACCAG--GCU-GCCCUGGUUCAGUAGCGCUGCCCCUGCC-
-...((((((((.......)))))....((((....((......))..((((((-.-...))..((((((((((--(..-..))))))))))).)))).))))..)))- ( -39.00)
>pst.2889 916360 104 + 6397126
-AUUGGCGCAUCGAGCCUCUUAGCAUUCGGGCUAUUUGCCGUUACACUGCGCGACCUUUUUCAAACUGGACCGG--CCCUGCCCU--UCCAGUAGCGCUGCCCCUGCCA
-..(((((((...(((((..........)))))...))).........((((((......))..((((((..((--(...)))..--)))))).)))).......)))) ( -33.70)
>psp.2591 879889 103 + 5928787
-AUUGGCGUAUCCAGCCCCUUAGCAACCGGUCUGUUUGCCGUUACACUGCGCGACC-UUUUCAAACUGGACCGG--CCCUGCCGU--UUCAGUAGCGCUGCCCCUGCCA
-..(((((((..(((.((..........)).)))..))).........((((((..-...))..((((((.(((--(...)))).--)))))).)))).......)))) ( -30.60)
>pss.2665 857485 103 + 6093698
-AUUGGCACAUCCAGCCCCUUAGCAACCGGCCGGUUUGCCGUUACACUGCGCGACC-UUUUCAAACUGGACCGG--CCCUGCCGU--UUCAGUAGCGCUGCCCCUGCCA
-..(((((......((......))....((((((....))).......((((((..-...))..((((((.(((--(...)))).--)))))).)))).)))..))))) ( -32.90)
>consensus
_AUUGGCGCAUCCAGCCUCUUAGCAACCGGCCGAUUUGCCGUUACACUGCGCGACC_UUUUCAAACUGGACCGG__CCCUGCC_U__UUCAGUAGCGCUGCCCCUGCCA
....((((...................(((........))).......((((((......))..((((((.................)))))).))))......)))). (-16.52 = -15.45 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:01 2007