Locus 208

Sequence ID pao.345
Location 605,944 – 606,054
Length 110
Max. P 0.994317
window815 window816

overview

Window 5

Location 605,944 – 606,054
Length 110
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 63.22
Mean single sequence MFE -41.10
Consensus MFE -15.24
Energy contribution -14.47
Covariance contribution -0.78
Combinations/Pair 1.45
Mean z-score -3.10
Structure conservation index 0.37
SVM decision value 2.47
SVM RNA-class probability 0.994317
Prediction RNA

Download alignment: ClustalW | MAF

>pao.345 605944 110 + 6264404
CGGCAAUGCCUGUAUCAAAAAUUUUUGAUAUUGA-UGACGGGUGGCC--GUCGCGCAAUUGCAAUCCGGCUGCGCCAGGCUUCUGGCAAAACCGGUCGGCAGCGACAUACUGU
.(((...(((((((((((............))))-).)))))).)))--(((((((....))...(((((((.(((((....))))).....)))))))..)))))....... ( -43.00)
>pau.348 615920 110 + 6537648
CGGCAAUGCCUGUAUCAAAAAUUUUUGAUAUUGA-UGACGGGUGGCC--GUCGCGCAAUUGCAAUCCGGCUGCGCCAGGCUUCUGGCAAAACCGGUCGGCAGCGACAUACUGU
.(((...(((((((((((............))))-).)))))).)))--(((((((....))...(((((((.(((((....))))).....)))))))..)))))....... ( -43.00)
>pel.2885 551807 106 - 5888780
UAGCAAGACCAAUAUCAAAAAGUUUUGAUAUUGGUCGAUGGGCGGAG--GAUGGGUUUGCCUGUGCGGGCCUCUUUG-----CGGGCAGUUCCGCUGUUUUCACCCAAAUUGC
..(((((((((((((((((....)))))))))))))..((((.((((--(.(((..(((((((((.((....)).))-----)))))))..)))...))))).))))..)))) ( -46.20)
>pst.243 425770 109 + 6397126
UCGCAAGGGCAAUAUCAAAAAGUUUUGAUAUUGCUUGAUGGGUGGCAUCGGUCAGGCGUUGUGAACUUGUCGCGCUGA----UGGGUAAUCCAGUUCUUACAGACCAAAUAAU
......(((((((((((((....)))))))))))....(((((...(((.((((((((..(....)....))).))))----).))).)))))...........))....... ( -33.80)
>psp.2808 454414 109 - 5928787
CUGCAAGGGCAAUAUCAAAAAGUUUUGAUAUUGCUGGAUGGGUGGCACCGGUCAGGCAUUCUGAACUUGUUGCGCUGA----CGGGUAAUCCAGUCUUUACAGGGCAAAUAAU
.(((...((((((((((((....))))))))))))((((((((...(((.((((((((............))).))))----).))).))))).))).......)))...... ( -38.60)
>pss.2907 412006 109 - 6093698
UCGCAAGGGCAAUAUCAAAAAGUUUUGAUAUUGCGGGAUGGAUGGCGUCGGUCAGGCGUUGUGAACUUGUCGUGCAGG----CGGGUGAUCCAGUCUUUGCGUGGCAAAUAAU
.((((((((((((((((((....))))))))))).((((..(..(((((.....)))))..)..(((((((.....))----))))).))))...)))))))........... ( -42.00)
>consensus
CCGCAAGGCCAAUAUCAAAAAGUUUUGAUAUUGCUUGAUGGGUGGCA__GGUCAGGCAUUGUGAACUGGCCGCGCUGG____CGGGCAAUCCAGUUCUUACGCGACAAAUAAU
..((....(((((((((((....))))))))))).....(.((((((....................)))))).)..........)).......................... (-15.24 = -14.47 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

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Window 6

Location 605,944 – 606,054
Length 110
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 63.22
Mean single sequence MFE -34.52
Consensus MFE -9.47
Energy contribution -9.58
Covariance contribution 0.11
Combinations/Pair 1.18
Mean z-score -3.06
Structure conservation index 0.27
SVM decision value 1.81
SVM RNA-class probability 0.978219
Prediction RNA

Download alignment: ClustalW | MAF

>pao.345 605944 110 - 6264404
ACAGUAUGUCGCUGCCGACCGGUUUUGCCAGAAGCCUGGCGCAGCCGGAUUGCAAUUGCGCGAC--GGCCACCCGUCA-UCAAUAUCAAAAAUUUUUGAUACAGGCAUUGCCG
.((((.....))))....((((((.((((((....)))))).))))))...(((((.((..(((--((....))))).-....(((((((....)))))))...))))))).. ( -40.70)
>pau.348 615920 110 - 6537648
ACAGUAUGUCGCUGCCGACCGGUUUUGCCAGAAGCCUGGCGCAGCCGGAUUGCAAUUGCGCGAC--GGCCACCCGUCA-UCAAUAUCAAAAAUUUUUGAUACAGGCAUUGCCG
.((((.....))))....((((((.((((((....)))))).))))))...(((((.((..(((--((....))))).-....(((((((....)))))))...))))))).. ( -40.70)
>pel.2885 551807 106 + 5888780
GCAAUUUGGGUGAAAACAGCGGAACUGCCCG-----CAAAGAGGCCCGCACAGGCAAACCCAUC--CUCCGCCCAUCGACCAAUAUCAAAACUUUUUGAUAUUGGUCUUGCUA
((((..((((((......((((......)))-----)......(((......))).........--...))))))..(((((((((((((....))))))))))))))))).. ( -40.90)
>pst.243 425770 109 - 6397126
AUUAUUUGGUCUGUAAGAACUGGAUUACCCA----UCAGCGCGACAAGUUCACAACGCCUGACCGAUGCCACCCAUCAAGCAAUAUCAAAACUUUUUGAUAUUGCCCUUGCGA
...........((((((...(((.....)))----((((.(((............)))))))..((((.....))))..(((((((((((....))))))))))).)))))). ( -27.00)
>psp.2808 454414 109 + 5928787
AUUAUUUGCCCUGUAAAGACUGGAUUACCCG----UCAGCGCAACAAGUUCAGAAUGCCUGACCGGUGCCACCCAUCCAGCAAUAUCAAAACUUUUUGAUAUUGCCCUUGCAG
..........((((((....(((((((((.(----((((.(((............)))))))).))))......)))))(((((((((((....)))))))))))..)))))) ( -34.00)
>pss.2907 412006 109 + 6093698
AUUAUUUGCCACGCAAAGACUGGAUCACCCG----CCUGCACGACAAGUUCACAACGCCUGACCGACGCCAUCCAUCCCGCAAUAUCAAAACUUUUUGAUAUUGCCCUUGCGA
...........(((((....(((.(((..((----..((.((.....)).))...))..))))))..............(((((((((((....)))))))))))..))))). ( -23.80)
>consensus
ACAAUUUGCCCCGGAAGAACGGGAUUACCCG____CCAGCGCAACAAGUUCACAAUGCCUCACC__CGCCACCCAUCAAGCAAUAUCAAAACUUUUUGAUAUUGCCCUUGCCA
...............................................................................(((((((((((....)))))))))))........ ( -9.47 =  -9.58 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:18:00 2007